Revert "change delivery of vcf to case level"

This reverts commit caa5154.

Author: karlnyr

mutant/modules/generic_reporter.py

@@ -226,7 +226,9 @@ def create_delivery_metrics(self, fastq_dir: str) -> None:
             {
                 "format": "csv",
                 "id": self.case,
-                "path": os.path.join(self.indir, f"{self.ticket}_komplettering.csv"),
+                "path": os.path.join(
+                    self.indir, f"{self.ticket}_komplettering.csv"
+                ),
                 "path_index": "~",
                 "step": "report",
                 "tag": "SARS-CoV-2-info",
@@ -256,7 +258,7 @@ def create_delivery_metrics(self, fastq_dir: str) -> None:
                 deliverables["files"].append(
                     {
                         "format": "vcf",
-                        "id": self.case,
+                        "id": sampleID,
                         "path": f"{self.indir}/articNcovNanopore_Genotyping_typeVariants/vcf/{base_sample}.vcf",
                         "path_index": "~",
                         "step": "genotyping",
@@ -303,7 +305,7 @@ def create_delivery_metrics(self, fastq_dir: str) -> None:
                 deliverables["files"].append(
                     {
                         "format": "vcf",
-                        "id": self.case,
+                        "id": sampleID,
                         "path": f"{self.indir}/ncovIllumina_Genotyping_typeVariants/vcf/{base_sample}.vcf",
                         "path_index": "~",
                         "step": "genotyping",