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Analysis

  1. Config

1. Config

Generate a MIP pedigree.yaml file for the FAMILY_ID and place it in the trailblazer root directory.

Command

$ cg analysis config [OPTIONS] FAMILY_ID

Input

  • FAMILY_ID: <Petname_family_id>

Databases

  • cg

Apps

  • Trailblazer

Action

  • Collect <Petname_family_id> meta data from the cg database.
  • Validate the meta data, handle single cases with unknown phenotype and reformat to MIP pedigree.yaml format via trailblazer.

Output

  • pedigree.yaml file in MIP format in the trailblazer root directory