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Patch: remove multiqc files from fixture and update software version paths (#4291)
### Changed - remove multiqc files from fixture and update software version paths
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cg/resources/raredisease_bundle_filenames.yaml

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@@ -545,7 +545,7 @@
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tag: autozyg
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- format: png
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id: SAMPLEID
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path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_regions/SAMPLEID_rhocall_filter_cadd_vep_upd_regions_1.png
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path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_regions/SAMPLEID_upd_regions_1.png
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step: chromograph_upd
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tag: regions
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- format: png
@@ -800,7 +800,7 @@
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tag: qc-metrics
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- format: yml
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id: CASEID
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path: PATHTOCASE/pipeline_info/nf_core_pipeline_software_mqc_versions.yml
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path: PATHTOCASE/pipeline_info/nf_core_raredisease_software_mqc_versions.yml
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step: software-versions
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tag: software-versions
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- format: meta
@@ -813,81 +813,6 @@
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path: PATHTOCASE/multiqc/multiqc_report.html
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step: multiqc
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tag: multiqc-html
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- format: meta
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id: CASEID
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path: PATHTOCASE/multiqc/multiqc_data/mosdepth_cov_dist.json
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step: multiqc
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tag: multiqc-mosdepth-covdist
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- format: meta
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id: CASEID
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path: PATHTOCASE/multiqc/multiqc_data/mosdepth_cumcov_dist.json
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step: multiqc
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tag: multiqc-mosdepth-cumcov
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- format: meta
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id: CASEID
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path: PATHTOCASE/multiqc/multiqc_data/mosdepth_perchrom.json
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step: multiqc
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tag: multiqc-mosdepth-perchrom
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- format: meta
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id: CASEID
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path: PATHTOCASE/multiqc/multiqc_data/multiqc_general_stats.json
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step: multiqc
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tag: multiqc-general-stats
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- format: meta
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id: CASEID
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path: PATHTOCASE/multiqc/multiqc_data/multiqc_peddy.json
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step: multiqc
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tag: multiqc-peddy
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- format: meta
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id: CASEID
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path: PATHTOCASE/multiqc/multiqc_data/multiqc_picard_AlignmentSummaryMetrics.json
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step: multiqc
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tag: multiqc-picard-alignment
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- format: meta
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id: CASEID
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path: PATHTOCASE/multiqc/multiqc_data/multiqc_picard_HsMetrics.json
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step: multiqc
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tag: multiqc-picard-hs
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- format: meta
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id: CASEID
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path: PATHTOCASE/multiqc/multiqc_data/multiqc_picard_insertSize.json
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step: multiqc
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tag: multiqc-picard-insertsize
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- format: meta
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id: CASEID
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path: PATHTOCASE/multiqc/multiqc_data/multiqc_picard_quality_by_cycle.json
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step: multiqc
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tag: multiqc-picard-qualitycycle
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- format: meta
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id: CASEID
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path: PATHTOCASE/multiqc/multiqc_data/multiqc_picard_quality_score_distribution.json
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step: multiqc
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tag: multiqc-picard-qualitydistr
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- format: meta
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id: CASEID
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path: PATHTOCASE/multiqc/multiqc_data/multiqc_picard_wgsmetrics.json
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step: multiqc
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tag: multiqc-picard-wgs
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- format: meta
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id: CASEID
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path: PATHTOCASE/multiqc/multiqc_data/multiqc_qualimap_bamqc_genome_results.json
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step: multiqc
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tag: multiqc-picard-bamqc
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- format: meta
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id: CASEID
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path: PATHTOCASE/multiqc/multiqc_data/picard_histogram_1.json
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step: multiqc
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tag: multiqc-picard-histogram1
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- format: meta
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id: CASEID
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path: PATHTOCASE/multiqc/multiqc_data/picard_histogram_2.json
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step: multiqc
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tag: multiqc-picard-histogram2
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- format: meta
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id: CASEID
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path: PATHTOCASE/multiqc/multiqc_data/picard_histogram_3.json
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step: multiqc
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tag: multiqc-picard-histogram3
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- format: csv
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id: CASEID
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path: PATHTOCASE/CASEID_samplesheet.csv

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