Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add assemble file to the files to delivery for microSALT sample tags #4256

Open
1 task
karlnyr opened this issue Feb 28, 2025 · 0 comments · May be fixed by #4299
Open
1 task

Add assemble file to the files to delivery for microSALT sample tags #4256

karlnyr opened this issue Feb 28, 2025 · 0 comments · May be fixed by #4299

Comments

@karlnyr
Copy link
Contributor

karlnyr commented Feb 28, 2025

As a production manager,
I want the assembly files that are generated in microSALT to be delivered to the customers if they have ordered analysis delivery,
So that they can handle these assemblies themselves, if we do not have a validated organism they can submit the STs themselves.

Work impact

Answer the following questions:

  • Is there currently a workaround for this issue? If so, what is it?
    • No, customers do not get the assembly in the delivery today
  • How much time would be saved by implementing this feature on a weekly basis?
    • Very little, but it would be neat to have a complete delivery. Also, customers currently ask us to submit not validated organisms, and we have to invest the time to tell them that we do not submit them.
  • How many users are affected by this issue?
    • Production bioinformatics
  • Are customers affected by this issue?
    • Yes, they do not get the assembly in the delivery today

Acceptance Criteria

  • The assemblies are sent to the customers when they order analysis as a delivery type for microSALT

Clarification

  • One assembly per sample is stored in the microSALT case bundle.
  • They are tagged with {storage, assembly, <sample.internal_id>}
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

Successfully merging a pull request may close this issue.

1 participant