removing samples from db

[ninanorgren]

Is there a way of removing samples already loaded into the mysql db? Or removing all the samples? Might be useful when setting things up. The link to the documentation does not work, so I cannot see if there already is a way of doing this.

[patrikgrenfeldt]

-yes it should be possible to remove a sample at least: $ chanjo remove SAMPLE-ID If you run with a sqlite-file as data store then you could use another (new) database-file to get a clean slate. Would that solve the problem? Den tis 3 mars 2020 kl 16:00 skrev ninanorgren <[email protected]>:

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Is there a way of removing samples already loaded into the mysql db? Or removing all the samples? Might be useful when setting things up. The link to the documentation does not work, so I cannot see if there already is a way of doing this. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#214?email_source=notifications&email_token=ABTDFJD5XPD7CM7KNTGTKH3RFULR7A5CNFSM4LAMKDCKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4ISBVRUA>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABTDFJGA54I42HVBIPKXZHDRFULR7ANCNFSM4LAMKDCA> .

-- *Patrik GrenfeldtSoftware Developer* Clinical Genomics Science for Life Laboratory, Stockholm, Sweden Visiting/*Delivery* address: Tomtebodavägen 23A/*23B*. 171 65 Solna. Sweden. Phone: *+46 <%2B46702385698>8 5248100* Email: [email protected]

[moonso]

Link to docs is now http://www.clinicalgenomics.se/chanjo/

Correct link in README will be updated in #215

However removing samples is not possible now and we have a hard time to find maintainer of chanjo at the moment. We hope the situation will be better soon and we intend to keep on using and develop chanjo in the future