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lines changed Original file line number Diff line number Diff line change @@ -181,7 +181,7 @@ def models(
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head .parse_header_line (line )
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else :
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break
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-
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+
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# Check before adding models info to header
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if "GeneticModels" in head .info_dict :
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logger .warning ("Genetic models are already annotated according to vcf header." )
@@ -233,13 +233,13 @@ def models(
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)
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logger .debug ("Compounds added" )
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- #Add the first variant to the iterator
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- if not line .startswith ('#' ):
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+ # Add the first variant to the iterator
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+ if not line .startswith ("#" ):
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variant_file = itertools .chain ([line ], variant_file )
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else :
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print_headers (head = head , outfile = outfile , silent = silent )
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sys .exit (0 )
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-
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+
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if vep :
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if "CSQ" not in head .info_dict :
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logger .warning ("vep flag is used but there is no CSQ field specified in header" )
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