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metabolic_reactions_modified.tsv
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"id" "stoichiometry" "direction" "catalyzed_by" "_comments"
"ADENOSINE-NUCLEOSIDASE-RXN" {"ADENOSINE[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD0-1108[CCO-CYTOSOL]": 1, "ADENINE[CCO-CYTOSOL]": 1} "L2R" ["EG11082-MONOMER"] "Replaced D-Ribofuranose (compound class that covers both alpha and beta forms) with a more specific molecule CPD0-1108 (beta form only)"
"INOSINE-NUCLEOSIDASE-RXN" {"INOSINE[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD0-1108[CCO-CYTOSOL]": 1, "HYPOXANTHINE[CCO-CYTOSOL]": 1} "L2R" ["EG11082-MONOMER"] "Replaced D-Ribofuranose (compound class that covers both alpha and beta forms) with a more specific molecule CPD0-1108 (beta form only)"
"RXN-14882[CCO-CYTOSOL]-CPD-15818//D-Ribofuranose.39." {"CPD-15818[CCO-CYTOSOL]": -1, "CPD0-1108[CCO-CYTOSOL]": 1} "BOTH" [] "Replaced D-Ribofuranose (compound class that covers both alpha and beta forms) with a more specific molecule CPD0-1108 (beta form only)"
"RXN-14882[CCO-EXTRACELLULAR]-CPD-15818//D-Ribofuranose.45." {"CPD-15818[CCO-EXTRACELLULAR]": -1, "CPD0-1108[CCO-EXTRACELLULAR]": 1} "BOTH" [] "Replaced D-Ribofuranose (compound class that covers both alpha and beta forms) with a more specific molecule CPD0-1108 (beta form only)"
"RXN-14882[CCO-PERI-BAC]-CPD-15818//D-Ribofuranose.40." {"CPD-15818[CCO-PERI-BAC]": -1, "CPD0-1108[CCO-PERI-BAC]": 1} "BOTH" [] "Replaced D-Ribofuranose (compound class that covers both alpha and beta forms) with a more specific molecule CPD0-1108 (beta form only)"
"RXN0-361" {"CYTIDINE[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD0-1108[CCO-CYTOSOL]": 1, "CYTOSINE[CCO-CYTOSOL]": 1} "L2R" ["EG11082-MONOMER", "CPLX0-7904", "CPLX0-8280"] "Replaced D-Ribofuranose (compound class that covers both alpha and beta forms) with a more specific molecule CPD0-1108 (beta form only)"
"RXN0-363" {"XANTHOSINE[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD0-1108[CCO-CYTOSOL]": 1, "XANTHINE[CCO-CYTOSOL]": 1} "L2R" ["EG11082-MONOMER"] "Replaced D-Ribofuranose (compound class that covers both alpha and beta forms) with a more specific molecule CPD0-1108 (beta form only)"
"URIDINE-NUCLEOSIDASE-RXN" {"URIDINE[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD0-1108[CCO-CYTOSOL]": 1, "URACIL[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-7904", "CPLX0-8280", "EG11082-MONOMER"] "Replaced D-Ribofuranose (compound class that covers both alpha and beta forms) with a more specific molecule CPD0-1108 (beta form only)"
"ASPAMINOTRANS-RXN" {"L-ASPARTATE[CCO-CYTOSOL]": -1, "2-KETOGLUTARATE[CCO-CYTOSOL]": -1, "OXALACETIC_ACID[CCO-CYTOSOL]": 1, "GLT[CCO-CYTOSOL]": 1} "BOTH" ["ASPAMINOTRANS-DIMER", "TYRB-DIMER"] "TYRB-DIMER added as an alternative catalyst based on Markus's kinetic reconstruction"
"RXN-15346" {"CPD-16551[CCO-CYTOSOL]": -1, "RIBOSE-5P[CCO-CYTOSOL]": 1} "L2R" [] "Replaced CPD-15895 (aldehydo-D-ribose-5P) with generic RIBOSE-5P"