From 46a5f2c64731831ab9965cd07850454c249c6c8d Mon Sep 17 00:00:00 2001 From: ioanagherman Date: Tue, 23 Jan 2024 17:39:24 +0000 Subject: [PATCH 01/34] Adding the violacein pathway to the model --- models/ecoli/processes/external_pathway.py | 83 ++++++ models/ecoli/sim/simulation.py | 4 + .../dataclasses/process/external_pathway.py | 278 ++++++++++++++++++ .../ecoli/dataclasses/process/process.py | 2 + .../new_gene_data/vioAE/gene_sequences.tsv | 6 + .../ecoli/flat/new_gene_data/vioAE/genes.tsv | 6 + .../vioAE/insertion_location.tsv | 2 + .../flat/new_gene_data/vioAE/proteins.tsv | 6 + .../ecoli/flat/new_gene_data/vioAE/rnas.tsv | 6 + .../vioAE/rnaseq_rsem_tpm_mean.tsv | 6 + .../vioAE_meta/gene_sequences.tsv | 6 + .../flat/new_gene_data/vioAE_meta/genes.tsv | 6 + .../vioAE_meta/insertion_location.tsv | 2 + .../vioAE_meta/metabolic_reactions_new.tsv | 7 + .../new_gene_data/vioAE_meta/metabolites.tsv | 11 + .../new_gene_data/vioAE_meta/proteins.tsv | 6 + .../flat/new_gene_data/vioAE_meta/rnas.tsv | 6 + .../vioAE_meta/rnaseq_rsem_tpm_mean.tsv | 6 + reconstruction/ecoli/knowledge_base_raw.py | 22 +- runscripts/fireworks/fw_queue.py | 2 +- 20 files changed, 464 insertions(+), 9 deletions(-) create mode 100644 models/ecoli/processes/external_pathway.py create mode 100644 reconstruction/ecoli/dataclasses/process/external_pathway.py create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE/gene_sequences.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE/genes.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE/insertion_location.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE/proteins.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE/rnas.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE/rnaseq_rsem_tpm_mean.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE_meta/gene_sequences.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE_meta/genes.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE_meta/insertion_location.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolic_reactions_new.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolites.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE_meta/proteins.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE_meta/rnas.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE_meta/rnaseq_rsem_tpm_mean.tsv diff --git a/models/ecoli/processes/external_pathway.py b/models/ecoli/processes/external_pathway.py new file mode 100644 index 000000000..084150834 --- /dev/null +++ b/models/ecoli/processes/external_pathway.py @@ -0,0 +1,83 @@ +""" +Metabolism sub-model for new(external) pathway. +This is a separate model to E.coli's metabolism and it is only run if the user has added an external +pathway to E. coli's metabolim. +The corresponding reactions of this model are catalysed by the enzymes produced by the exogenous genes +that we are adding. +The reactions are defined in /wcEcoli/reconstruction/ecoli/flat/new_gene_data. +""" + +import wholecell.processes.process +from wholecell.utils import units +from wholecell.utils.constants import REQUEST_PRIORITY_METABOLISM + + +class MetabolismExternalPathway(wholecell.processes.process.Process): + """ Metabolism External Pathway """ + + _name = "MetabolismExternalPathway" + + # Constructor + def __init__(self): + super(MetabolismExternalPathway, self).__init__() + + # Construct object graph + def initialize(self, sim, sim_data): + super(MetabolismExternalPathway, self).initialize(sim, sim_data) + # Simulation options + self.jit = sim._jit + + # Get constants + self.n_avogadro = sim_data.constants.n_avogadro.asNumber(1 / units.mmol) + self.cell_density = sim_data.constants.cell_density.asNumber(units.g / units.L) + + # check if there is a new metabolic pathway to be added + print(dir(sim_data.process.metabolism_external_pathway.has_external_pathway)) + if sim_data.process.metabolism_external_pathway.has_external_pathway==True: + self.external_pathway_exists = True + # Create method + self.molecules_to_next_time_step = sim_data.process.metabolism_external_pathway.molecules_to_next_time_step + + # Build views + self.molecule_names = sim_data.process.metabolism_external_pathway.molecule_names + self.molecules = self.bulkMoleculesView(self.molecule_names) + + self.enzyme_names = [item for sublist in sim_data.process.metabolism_external_pathway.enzymes.values() for + item in sublist] + print('Enz names ', self.enzyme_names) + self.clean_enzyme = sorted([*set(list(filter(lambda item: item is not None, self.enzyme_names)))]) + self.enzymes = self.bulkMoleculesView(self.clean_enzyme) + + self.bulkMoleculesRequestPriorityIs(REQUEST_PRIORITY_METABOLISM) + else: + self.external_pathway_exists = False + print('External pathway not included') + + def calculateRequest(self): + if self.external_pathway_exists: + # Get molecule counts + molecule_counts = self.molecules.total_counts() + self.molecule_dict = dict(zip(self.molecule_names, molecule_counts)) + enzyme_counts = self.enzymes.total_counts() + self.enzymes_dict = dict(zip(self.clean_enzyme, enzyme_counts)) + + # Get cell mass and volume + dry_mass = (self.readFromListener("Mass", "dryMass") * units.fg).asNumber(units.g) + cell_mass = (self.readFromListener("Mass", "cellMass") * units.fg).asNumber(units.g) + self.cell_volume = cell_mass / self.cell_density + self.dcw_to_volume = self.cell_density * (dry_mass / cell_mass) + print('Molecules dict ', self.molecule_dict) + + self.molecules_required, self.all_molecule_changes, self.flux = self.molecules_to_next_time_step( + self.molecule_dict, self.enzymes_dict, + self.cell_volume, self.n_avogadro, 10000, + method="LSODA", jit=self.jit) + + # Request counts of molecules needed + self.molecules.requestIs(self.molecules_required) + + def evolveState(self): + if self.external_pathway_exists: + # Increment changes in molecule counts + self.molecules.countsInc(self.all_molecule_changes) + print('Updated molecule count') \ No newline at end of file diff --git a/models/ecoli/sim/simulation.py b/models/ecoli/sim/simulation.py index cec7982bc..df1419291 100755 --- a/models/ecoli/sim/simulation.py +++ b/models/ecoli/sim/simulation.py @@ -45,6 +45,7 @@ from models.ecoli.sim.initial_conditions import calcInitialConditions from wholecell.sim.divide_cell import divide_cell from models.ecoli.sim.initial_conditions import setDaughterInitialConditions +from models.ecoli.processes.external_pathway import MetabolismExternalPathway class EcoliSimulation(Simulation): @@ -87,6 +88,9 @@ class EcoliSimulation(Simulation): ( ChromosomeStructure, ), + ( + MetabolismExternalPathway, + ), ( Metabolism, ), diff --git a/reconstruction/ecoli/dataclasses/process/external_pathway.py b/reconstruction/ecoli/dataclasses/process/external_pathway.py new file mode 100644 index 000000000..068a99f69 --- /dev/null +++ b/reconstruction/ecoli/dataclasses/process/external_pathway.py @@ -0,0 +1,278 @@ +from wholecell.utils import units +import numpy as np +from wholecell.utils import build_ode +import scipy +import scipy.integrate +import sympy as sp +from wholecell.utils import data + +#TO DO: reactions catalyzed by several enzymes. + +# Alternative methods to try (in order of priority) when solving ODEs to the next time step +IVP_METHODS = ['LSODA', 'BDF'] +COUNTS_UNITS = units.mmol +VOLUME_UNITS = units.L +TIME_UNITS = units.s +MODEL_FLUX_UNITS = COUNTS_UNITS / VOLUME_UNITS / TIME_UNITS +DCW_FLUX_UNITS = units.mmol / units.g / units.h + +class MetabolismExternalPathway(object): + def __init__(self, raw_data, sim_data): + + if hasattr(raw_data, 'new_gene_data') and hasattr(getattr(raw_data.new_gene_data, dir(raw_data.new_gene_data)[-1]), 'metabolic_reactions_new'): + has_external_pathway = True + else: + has_external_pathway = False + + if has_external_pathway==True: + # Build the abstractions needed for the metabolism corresponding to the external pathway + molecules = [] # list of all molecules involved in the pathway + kcats = [] + kms = [] + substrates = [] + rxnIds = [] # ID tied to each rxn equation + enzymes = {} # dictionary of all enzymes for each reaction + + stoichMatrixI = [] # Molecule indices + stoichMatrixJ = [] # Reaction indices + stoichMatrixV = [] # Stoichometric coefficients + + stoichMatrixMass = [] # molecular mass of molecules in stoichMatrixI + independentMolecules = [] # list of all specific independent molecule names + independent_molecule_indexes = [] # index of each of the independent molecules + + new_genes_folder = getattr(raw_data.new_gene_data, dir(raw_data.new_gene_data)[-1]) + for reactionIndex, reaction in enumerate(new_genes_folder.metabolic_reactions_new): + reactionName = reaction["id"] + if reactionName not in rxnIds: + rxnIds.append(reactionName) + kcats.append(reaction["kcat"]) + kms.append(reaction["km"]) + substrates.append(reaction["substrate"]) + + enzymes[reactionName] = reaction["catalyzed_by"] + + reactionIndex = len(rxnIds) - 1 + + #Build stoichiometry matrix + for mol_id, coeff in reaction["stoichiometry"].items(): + mol_id_with_compartment = mol_id + + if mol_id_with_compartment not in molecules: + molecules.append(mol_id_with_compartment) + molecule_index = len(molecules) - 1 + else: + molecule_index = molecules.index(mol_id_with_compartment) + + assert (coeff % 1) == 0 + + stoichMatrixI.append(molecule_index) + stoichMatrixJ.append(reactionIndex) + stoichMatrixV.append(coeff) + molecule = mol_id.split("[")[0] + + # Build matrix with linearly independent rows based on network orientation + if str(molecule) in ["HK", "RR", "ATP"] and molecule not in independentMolecules: + independentMolecules.append(molecule) + independent_molecule_indexes.append(molecule_index) + + # Find molecular mass of the molecule and add to mass matrix + molecularMass = sim_data.getter.get_mass(mol_id_with_compartment.split('[')[0]).asNumber(units.g / units.mol) + stoichMatrixMass.append(molecularMass) + self.molecule_names = np.array(molecules, dtype='U') + self.rxn_ids = rxnIds + self.flux = np.array(np.zeros(len(rxnIds))) + self.enzymes = enzymes + self.kcats = np.array(kcats) + self.kms = np.array(kms) + self.substrates = np.array(substrates) + + self.independent_molecules = np.array(independentMolecules, dtype='U') + self.independent_molecule_indexes = np.array(independent_molecule_indexes) + self._stoichMatrixI = np.array(stoichMatrixI) + self._stoichMatrixJ = np.array(stoichMatrixJ) + self._stoichMatrixV = np.array(stoichMatrixV) + + self._stoich_matrix_mass = np.array(stoichMatrixMass) + self.balance_matrix = self.stoich_matrix() * self.mass_matrix() + + # Find the mass balance of each equation in the balanceMatrix + massBalanceArray = self.mass_balance() + + # The stoichometric matrix should balance out to numerical zero. This gives an error with smaller number. + assert np.max(np.absolute(massBalanceArray)) < 1e-9 + + # Build matrices + self._populate_derivative_and_jacobian() + + self.has_external_pathway = has_external_pathway + + + def __getstate__(self): + """Return the state to pickle, omitting derived attributes that + __setstate__() will recompute, esp. the ode_derivatives + that don't pickle. + """ + try: + return data.dissoc_strict(self.__dict__, ( + 'symbolic_rates', + '_rates', + '_stoich_matrix')) + except: + return self.__dict__ + + + def __setstate__(self, state): + """Restore instance attributes, recomputing some of them.""" + try: + self.__dict__.update(state) + self._populate_derivative_and_jacobian() + except: + return 0 + + def stoich_matrix(self): + ''' + Builds stoichiometry matrix + Rows: molecules + Columns: reactions + Values: reaction stoichiometry + ''' + shape = (self._stoichMatrixI.max() + 1, self._stoichMatrixJ.max() + 1) + out = np.zeros(shape, np.float64) + out[self._stoichMatrixI, self._stoichMatrixJ] = self._stoichMatrixV + return out + + def mass_matrix(self): + ''' + Builds stoichiometry mass matrix + Rows: molecules + Columns: reactions + Values: molecular mass + ''' + shape = (self._stoichMatrixI.max() + 1, self._stoichMatrixJ.max() + 1) + out = np.zeros(shape, np.float64) + out[self._stoichMatrixI, self._stoichMatrixJ] = self._stoich_matrix_mass + return out + + def mass_balance(self): + ''' + Sum along the columns of the massBalance matrix to check for reaction mass balance + ''' + return np.sum(self.balance_matrix, axis=0) + + def _populate_derivative_and_jacobian(self): + '''Compile callable functions for computing the derivative.''' + self._make_derivative() + + self._rates = build_ode.derivatives(self.symbolic_rates) + self._stoich_matrix = self.stoich_matrix() # Matrix is small and can be cached for derivatives + + + def _make_y_dy(self): + '''This is building the right hand side of the ODE system using MM kinetics.''' + + S = self.stoich_matrix() + + yStrings = ["y[%d]" % x for x in range(S.shape[0])] + + y = sp.symbols(yStrings) + rates = [] + for colIdx in range(S.shape[1]): + #if colIdx==0: + flux = self.kcats[colIdx] * y[colIdx]/ (self.kms[colIdx] + y[colIdx]) + #else: + # flux = rates[-1] + rates.append(flux) + + return y, rates + + def _make_derivative(self): + ''' + Creates symbolic representation of the ordinary differential equations + and the Jacobian. Used during simulations. + ''' + y, rates = self._make_y_dy() + + rates = sp.Matrix(rates) + self.symbolic_rates = rates + + + def molecules_to_next_time_step(self, moleculeDict, enzymeDict, cellVolume, + nAvogadro, timeStepSec, method="LSODA", jit=True): + + """ + Calculates the changes in the counts of molecules in the next timestep + by solving an initial value ODE problem. + + Args: + moleculeDict (dict): name and current counts of molecules + involved in the ODE + enzymeDict (dict): dictionary of enzyme counts + cellVolume (float): current volume of cell + nAvogadro (float): Avogadro's number + timeStepSec (float): current length of timestep in seconds + method (str): name of the ODE method to use + jit (bool): if True, use the jit compiled version of derivatives + functions + + + Returns: + moleculesNeeded (1d ndarray, ints): counts of molecules that need + to be consumed + allMoleculesChanges (1d ndarray, ints): expected changes in + molecule counts after timestep + """ + + subCounts, subNames, enzymeCounts, enzymeNames = [], [], [], [] + for sub in self.substrates: + subCounts.append(moleculeDict[sub[0]]) + subNames.append(sub[0]) + + for reaction in self.rxn_ids: + try: + enzymeCounts.append(enzymeDict[self.enzymes[reaction][0]]) + enzymeNames.append(self.enzymes[reaction][0]) + except: + enzymeCounts.append(1) + enzymeNames.append(1) + #else: + # enzymeCounts.append(enzymeDict[self.enzymes[reaction][0]]) + # enzymeNames.append(self.enzymes[reaction][0]) + + enzymeConc = np.array(enzymeCounts) / (cellVolume * nAvogadro) + s_init = np.array(subCounts) / (cellVolume * nAvogadro) + + moleculeNames = list(moleculeDict.keys()) + moleculeCounts = list(moleculeDict.values()) + y_init = np.array(moleculeCounts) / (cellVolume * nAvogadro) + derivatives = self.derivatives + + sol = scipy.integrate.solve_ivp( + lambda t, y: derivatives([0, timeStepSec], s_init, enzymeConc), [0, timeStepSec], y_init, + method=method, t_eval=[0, timeStepSec], atol=1e-8) + y = sol.y.T + y[y < 0] = 0 + yMolecules = (y * (cellVolume * nAvogadro)) #.asNumber(COUNTS_UNITS/VOLUME_UNITS) + + #print(yMolecules) + # Calculate changes in molecule counts for all molecules + allMoleculesChanges = yMolecules[-1, :] - yMolecules[0, :] + + # Molecules needed are the change but only for the molecules corresponding to the negative terms in the stoich matrix + moleculesNeeded = np.negative(allMoleculesChanges).clip(min=0) + + #print('moleculesNeeded', moleculesNeeded) + #print('allMoleculesChanges', allMoleculesChanges) + #print('flux', self.flux) + return moleculesNeeded, allMoleculesChanges, self.flux + + def derivatives(self, t, y, enzymeC): + """ + Calculate derivatives from stoichiometry and rates with argument order + for solve_ivp. + """ + self.flux = np.multiply(enzymeC, self._rates[0](y, t)) #MODEL_FLUX_UNITS * + first_element = self.flux[0] + for i in range(len(self.flux)): + self.flux[i] = first_element + return self._stoich_matrix.dot(np.transpose(self.flux)) diff --git a/reconstruction/ecoli/dataclasses/process/process.py b/reconstruction/ecoli/dataclasses/process/process.py index af117f1e1..bcd0b3203 100755 --- a/reconstruction/ecoli/dataclasses/process/process.py +++ b/reconstruction/ecoli/dataclasses/process/process.py @@ -12,6 +12,7 @@ from .transcription_regulation import TranscriptionRegulation from .translation import Translation from .two_component_system import TwoComponentSystem +from .external_pathway import MetabolismExternalPathway class Process(object): @@ -29,3 +30,4 @@ def __init__(self, raw_data, sim_data): self.transcription_regulation = TranscriptionRegulation(raw_data, sim_data) self.translation = Translation(raw_data, sim_data) self.two_component_system = TwoComponentSystem(raw_data, sim_data) + self.metabolism_external_pathway = MetabolismExternalPathway(raw_data, sim_data) diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE/gene_sequences.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE/gene_sequences.tsv new file mode 100644 index 000000000..81eff1ae2 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE/gene_sequences.tsv @@ -0,0 +1,6 @@ +"id" "symbol" "synonyms" "gene_seq" +"NG001" "vioA" ["vioA"] "ATGAAACATTCTTCCGATATCTGCATTGTTGGTGCTGGTATTTCTGGTTTGACGTGCGCAAGCCATCTGCTGGACAGCCCGGCATGCCGTGGTCTGAGCCTGCGTATCTTTGACATGCAGCAAGAAGCCGGTGGCCGTATCCGCAGCAAAATGCTGGATGGTAAGGCAAGCATTGAACTGGGCGCAGGTCGCTACTCCCCTCAGTTGCACCCGCATTTCCAAAGCGCAATGCAGCACTATAGCCAAAAGAGCGAAGTCTATCCGTTCACCCAGTTGAAGTTCAAATCTCACGTGCAGCAAAAGCTGAAGCGCGCCATGAATGAACTGTCCCCGCGTCTGAAAGAGCATGGTAAAGAGAGCTTTTTGCAGTTTGTCAGCCGTTATCAAGGTCACGATAGCGCGGTTGGTATGATCCGCTCTATGGGTTACGACGCACTGTTCCTGCCGGATATCAGCGCAGAAATGGCCTACGACATTGTGGGTAAGCACCCGGAGATCCAGAGCGTGACGGACAACGACGCGAACCAATGGTTTGCAGCGGAAACGGGCTTTGCTGGTCTGATTCAGGGCATCAAGGCTAAGGTTAAGGCGGCAGGTGCGCGTTTTAGCCTGGGTTATCGTCTGCTGAGCGTCCGTACCGACGGTGACGGCTACCTGCTGCAACTGGCAGGTGACGACGGCTGGAAACTGGAGCACCGTACCCGCCATCTGATTCTGGCGATTCCGCCGAGCGCGATGGCGGGTTTGAATGTTGATTTTCCAGAAGCCTGGTCCGGTGCGCGCTATGGCAGCCTGCCGCTGTTTAAGGGCTTTCTGACGTACGGTGAGCCGTGGTGGTTGGACTACAAACTGGACGATCAGGTGCTGATTGTTGACAACCCGCTGCGCAAAATCTATTTCAAAGGCGATAAGTACCTGTTCTTCTATACCGATAGCGAGATGGCGAATTACTGGCGCGGTTGTGTCGCGGAGGGCGAGGACGGTTACCTGGAGCAAATTCGCACCCATTTGGCTAGCGCACTGGGTATCGTCCGTGAACGTATCCCGCAACCGCTGGCACACGTTCACAAGTATTGGGCGCACGGCGTTGAGTTTTGCCGTGATTCTGATATTGACCACCCGAGCGCACTGTCTCATCGCGACAGCGGTATCATCGCGTGCTCCGATGCGTACACGGAGCATTGTGGTTGGATGGAGGGCGGTCTGCTGAGCGCCCGTGAGGCAAGCCGTCTGCTGTTGCAGCGTATCGCCGCGTGA" +"NG002" "vioB" ["vioB"] "ATGAGCATTCTGGATTTCCCGCGTATCCACTTCCGTGGCTGGGCCCGTGTCAATGCGCCGACCGCGAACCGCGATCCGCACGGCCACATCGATATGGCCAGCAATACCGTGGCGATGGCGGGTGAGCCGTTCGACCTGGCACGCCATCCTACGGAGTTCCACCGTCACCTGCGCTCCCTGGGTCCGCGCTTCGGCTTGGATGGTCGTGCTGACCCGGAAGGCCCGTTCAGCCTGGCCGAGGGCTACAACGCTGCCGGTAACAACCACTTTTCGTGGGAGAGCGCAACCGTTAGCCACGTGCAATGGGATGGCGGTGAGGCGGATCGTGGTGACGGTCTGGTCGGTGCTCGTTTGGCACTGTGGGGTCACTACAATGATTATCTGCGTACCACCTTCAATCGTGCTCGTTGGGTCGACAGCGACCCGACGCGCCGTGACGCTGCACAAATCTATGCGGGCCAATTCACCATTAGCCCGGCTGGTGCCGGTCCGGGTACGCCGTGGCTGTTTACGGCAGACATTGATGATAGCCATGGTGCACGTTGGACGCGTGGCGGCCACATTGCAGAGCGTGGCGGCCACTTCTTGGATGAAGAGTTTGGTCTGGCACGCCTGTTTCAGTTCTCTGTGCCGAAAGATCACCCACATTTTCTGTTTCACCCGGGTCCGTTTGATTCCGAGGCCTGGCGTCGTCTGCAATTGGCTCTGGAGGATGACGACGTTCTGGGTCTGACCGTGCAATATGCGTTGTTCAATATGAGCACCCCGCCTCAGCCGAACAGCCCGGTTTTTCACGATATGGTCGGTGTTGTCGGTCTGTGGCGTCGTGGTGAACTGGCGAGCTACCCGGCTGGTCGTCTGCTGCGTCCGCGTCAACCGGGTCTGGGTGACCTGACCCTGCGCGTCAACGGTGGTCGCGTTGCGCTGAATTTGGCGTGTGCCATTCCGTTCAGCACTCGTGCCGCGCAGCCAAGCGCACCGGACCGCCTGACCCCGGACCTGGGTGCCAAACTGCCGCTGGGCGATCTGCTGCTGCGTGATGAGGACGGCGCACTGTTGGCACGTGTGCCGCAGGCTCTGTACCAAGACTATTGGACGAATCACGGTATTGTGGACCTGCCGCTGCTGCGCGAACCGCGTGGTAGCTTGACCCTGAGCAGCGAACTGGCGGAGTGGCGTGAGCAAGACTGGGTCACCCAAAGCGACGCGTCTAACCTGTACCTGGAGGCACCGGATCGCCGTCACGGTCGCTTTTTCCCTGAGAGCATCGCGCTGCGCAGCTACTTTCGCGGTGAAGCGCGTGCGCGTCCGGATATCCCGCATCGTATCGAGGGCATGGGCCTGGTCGGCGTCGAATCTCGTCAGGATGGCGACGCTGCGGAATGGCGTCTGACGGGTCTGCGTCCGGGTCCGGCACGCATTGTTCTGGACGATGGTGCCGAGGCGATCCCTCTGCGTGTTCTGCCTGACGATTGGGCGCTGGATGACGCGACCGTCGAAGAAGTGGATTACGCCTTTTTGTACCGCCACGTTATGGCGTATTACGAGCTGGTGTATCCATTCATGAGCGACAAGGTGTTTTCCCTGGCTGATCGTTGCAAATGTGAAACGTACGCACGTCTGATGTGGCAGATGTGTGATCCGCAGAACCGCAACAAGTCCTATTACATGCCGAGCACCCGCGAACTGTCGGCACCGAAAGCTCGTTTGTTCTTGAAGTATCTGGCCCACGTGGAAGGCCAGGCACGCCTGCAAGCACCTCCGCCAGCGGGTCCGGCACGCATTGAATCTAAAGCCCAGTTGGCGGCAGAGCTGCGTAAAGCCGTCGACCTGGAGCTGTCTGTGATGCTGCAATACCTGTACGCGGCGTATAGCATTCCGAACTATGCACAGGGCCAACAACGTGTTCGTGACGGTGCGTGGACCGCCGAGCAGCTGCAACTGGCGTGCGGTAGCGGTGACCGTCGCCGTGATGGCGGTATTCGTGCAGCACTGCTGGAAATTGCTCATGAAGAAATGATTCATTACCTGGTCGTTAACAACCTGCTGATGGCCCTGGGCGAGCCGTTCTACGCGGGTGTCCCGCTGATGGGCGAAGCGGCACGTCAGGCGTTTGGCCTGGACACCGAGTTCGCTCTGGAACCGTTTAGCGAAAGCACGCTGGCACGTTTTGTTCGTCTGGAATGGCCGCACTTTATCCCAGCACCGGGCAAATCCATCGCGGACTGCTATGCCGCCATTCGTCAGGCGTTTTTGGATCTGCCGGACTTGTTTGGTGGCGAGGCAGGTAAGCGTGGCGGTGAACACCACCTGTTCCTGAATGAGCTGACCAACCGTGCGCATCCGGGTTATCAACTGGAAGTTTTCGATCGCGACTCGGCGCTGTTTGGTATTGCATTTGTGACCGATCAGGGCGAAGGTGGCGCTCTGGACAGCCCGCACTACGAACATAGCCATTTTCAACGTCTGCGTGAAATGAGCGCGCGTATCATGGCTCAAAGCGCACCGTTCGAACCGGCGCTGCCGGCGTTGCGTAATCCGGTTCTGGATGAGAGCCCGGGTTGCCAACGTGTCGCAGACGGTCGTGCGCGTGCGCTGATGGCATTGTACCAAGGCGTTTATGAGCTGATGTTTGCGATGATGGCGCAGCACTTCGCCGTGAAACCGCTGGGTAGCTTGCGTCGCAGCCGCCTGATGAACGCAGCAATCGATCTGATGACCGGTCTGTTGCGTCCGCTGAGCTGCGCGCTGATGAACCTGCCAAGCGGCATCGCCGGTCGCACGGCCGGTCCGCCGCTGCCGGGTCCGGTTGACACCCGTAGCTATGACGACTACGCGCTGGGCTGTCGCATGCTGGCACGCCGTTGCGAGCGTCTGCTGGAGCAGGCGAGCATGCTGGAACCGGGTTGGCTGCCGGATGCGCAGATGGAGCTGCTGGATTTCTATCGTCGCCAAATGCTGGACTTGGCGTGCGGCAAACTGAGCCGCGAGGCCTAA" +"NG003" "vioC" ["vioC"] "ATGAAACGTGCGATTATCGTTGGTGGCGGCCTGGCGGGTGGCCTGACCGCGATCTACCTGGCGAAGCGTGGCTACGAAGTGCACGTCGTGGAGAAGCGTGGTGATCCTCTGCGCGATCTGAGCTCTTACGTGGACGTTGTTAGCAGCCGTGCGATCGGCGTGAGCATGACCGTTCGTGGTATCAAGAGCGTTTTGGCTGCGGGCATTCCGCGTGCAGAGCTGGATGCGTGTGGCGAACCGATCGTGGCAATGGCTTTCTCCGTGGGTGGTCAGTATCGCATGCGCGAACTGAAGCCGTTGGAGGATTTCCGTCCGCTGAGCTTGAACCGTGCGGCGTTTCAAAAGCTGCTGAACAAATACGCGAACCTGGCAGGCGTTCGTTACTACTTTGAGCATAAGTGCCTGGATGTTGACCTGGATGGTAAGAGCGTGTTGATTCAGGGCAAAGATGGTCAGCCGCAGCGTCTGCAAGGTGACATGATTATCGGTGCGGATGGCGCCCACAGCGCCGTCCGTCAGGCGATGCAGAGCGGCCTGCGTCGTTTCGAGTTCCAGCAAACGTTCTTCCGCCATGGCTACAAAACCCTGGTTTTGCCGGACGCGCAAGCACTGGGTTACCGTAAAGACACGCTGTACTTTTTCGGCATGGATTCCGGTGGCCTGTTCGCGGGTCGTGCGGCTACGATCCCAGATGGTAGCGTCAGCATCGCCGTTTGCCTGCCGTACTCGGGTAGCCCTTCCCTGACGACCACCGACGAACCGACGATGCGTGCGTTCTTCGATCGTTACTTCGGTGGCCTGCCGCGTGACGCGCGTGACGAAATGCTGCGTCAGTTTCTGGCGAAGCCGAGCAACGACCTGATTAACGTGCGCTCTAGCACCTTTCACTATAAGGGTAATGTGCTGTTGCTGGGTGATGCTGCGCATGCGACTGCGCCGTTCCTGGGTCAGGGTATGAACATGGCGCTGGAGGACGCCCGCACGTTTGTCGAGCTGCTGGACCGCCACCAGGGCGACCAAGACAAAGCCTTTCCGGAGTTCACGGAGCTGCGCAAAGTCCAGGCAGACGCAATGCAAGACATGGCTCGCGCCAACTATGACGTTTTGAGCTGCTCGAACCCGATCTTTTTCATGCGTGCGCGTTACACGCGTTACATGCATTCCAAGTTTCCGGGCCTGTATCCGCCGGATATGGCCGAGAAACTGTACTTTACGAGCGAGCCGTACGATCGTCTGCAACAAATCCAGCGTAAACAGAATGTTTGGTACAAGATTGGTCGCGTGAATTGA" +"NG004" "vioD" ["vioD"] "ATGAAGATTCTGGTCATTGGTGCTGGTCCAGCTGGTCTGGTTTTCGCATCCCAACTGAAGCAGGCACGCCCTTTGTGGGCCATTGACATCGTGGAGAAGAATGACGAGCAAGAAGTGCTGGGCTGGGGTGTCGTGCTGCCTGGCCGTCCGGGTCAGCACCCGGCGAACCCGCTGTCCTATCTGGATGCACCGGAGCGTCTGAATCCGCAATTTCTGGAGGACTTCAAACTGGTGCATCATAATGAGCCGTCCTTGATGTCCACGGGCGTTTTGTTGTGCGGCGTGGAGCGTCGCGGTCTGGTTCACGCGCTGCGCGATAAGTGCCGCAGCCAAGGCATTGCTATTCGTTTCGAAAGCCCGTTGCTGGAACACGGTGAGCTGCCGCTGGCGGACTATGATCTGGTGGTCCTGGCTAATGGTGTTAATCACAAAACCGCGCATTTCACCGAGGCTCTGGTCCCGCAGGTGGACTACGGCCGCAATAAGTACATTTGGTATGGCACTAGCCAGCTGTTCGATCAGATGAATCTGGTTTTTCGTACCCATGGTAAAGATATCTTTATCGCGCATGCCTATAAGTATAGCGATACCATGAGCACGTTCATTGTCGAATGTAGCGAAGAGACTTACGCACGCGCACGCCTGGGCGAAATGTCCGAAGAGGCGAGCGCAGAATACGTTGCTAAGGTGTTCCAGGCCGAGCTGGGTGGTCACGGCCTGGTGAGCCAGCCGGGTCTGGGTTGGCGTAACTTCATGACGTTGTCTCATGACCGTTGTCATGATGGTAAGTTGGTTCTGCTGGGTGACGCGCTGCAAAGCGGTCACTTTAGCATCGGCCACGGCACCACGATGGCCGTGGTGGTGGCGCAGCTGCTGGTTAAAGCGCTGTGTACCGAAGATGGTGTGCCTGCCGCGCTGAAACGTTTCGAAGAGCGTGCCCTGCCGCTGGTGCAGTTGTTCCGTGGCCACGCAGACAACAGCCGCGTTTGGTTCGAAACCGTCGAAGAGCGCATGCACCTGTCCTCGGCGGAATTTGTGCAAAGCTTCGACGCACGCCGCAAAAGCCTGCCGCCGATGCCGGAAGCACTGGCGCAGAATCTGCGTTATGCTTTGCAGCGCTGA" +"NG005" "vioE" ["vioE"] "ATGGAGAACCGTGAGCCACCACTGTTGCCAGCCCGTTGGAGCAGCGCCTATGTCTCTTATTGGAGCCCGATGCTGCCGGATGACCAGCTGACCAGCGGCTATTGCTGGTTCGACTATGAACGTGACATCTGTCGTATTGACGGCCTGTTCAATCCGTGGAGCGAGCGTGATACTGGTTATCGCCTGTGGATGTCGGAGGTTGGTAATGCGGCCAGCGGCCGTACCTGGAAACAAAAAGTCGCCTATGGTCGTGAGCGTACCGCCCTGGGTGAACAGCTGTGTGAGCGTCCGCTGGATGATGAGACTGGCCCTTTTGCCGAATTGTTCCTGCCACGCGATGTCCTGCGCCGTCTGGGTGCCCGTCACATTGGCCGTCGCGTGGTTCTGGGTCGCGAAGCGGACGGTTGGCGTTACCAGCGCCCAGGTAAAGGTCCGAGCACCCTGTACCTGGATGCGGCGAGCGGCACTCCACTGCGCATGGTCACCGGCGATGAAGCGTCGCGTGCAAGCCTGCGTGATTTTCCGAATGTGAGCGAGGCGGAGATCCCGGACGCGGTTTTCGCGGCCAAGCGCTAA" diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE/genes.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE/genes.tsv new file mode 100644 index 000000000..d297cef75 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE/genes.tsv @@ -0,0 +1,6 @@ +"id" "symbol" "synonyms" "left_end_pos" "right_end_pos" "direction" "rna_ids" +"NG001" "vioA" ["vioA"] 0 1256 "+" ["NG001_RNA"] +"NG002" "vioB" ["vioB"] 1257 4253 "+" ["NG002_RNA"] +"NG003" "vioC" ["vioC"] 4254 5543 "+" ["NG003_RNA"] +"NG004" "vioD" ["vioD"] 5544 6665 "+" ["NG004_RNA"] +"NG005" "vioE" ["vioE"] 6666 7241 "+" ["NG005_RNA"] diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE/insertion_location.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE/insertion_location.tsv new file mode 100644 index 000000000..61a4aa48e --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE/insertion_location.tsv @@ -0,0 +1,2 @@ +"subdirectory" "insertion_pos" "direction" +"vioA-E" 400000 "+" diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE/proteins.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE/proteins.tsv new file mode 100644 index 000000000..33ae29fa2 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE/proteins.tsv @@ -0,0 +1,6 @@ +"id" "common_name" "synonyms" "seq" "experimental_compartment" "computational_compartment" "cleavage_of_initial_methionine" "selenocysteine_at_opal" "protein_feature_cofactors" "in_complex" +"NG-VioA-MONOMER" "VioA" ["VioA"] "MKHSSDICIVGAGISGLTCASHLLDSPACRGLSLRIFDMQQEAGGRIRSKMLDGKASIELGAGRYSPQLHPHFQSAMQHYSQKSEVYPFTQLKFKSHVQQKLKRAMNELSPRLKEHGKESFLQFVSRYQGHDSAVGMIRSMGYDALFLPDISAEMAYDIVGKHPEIQSVTDNDANQWFAAETGFAGLIQGIKAKVKAAGARFSLGYRLLSVRTDGDGYLLQLAGDDGWKLEHRTRHLILAIPPSAMAGLNVDFPEAWSGARYGSLPLFKGFLTYGEPWWLDYKLDDQVLIVDNPLRKIYFKGDKYLFFYTDSEMANYWRGCVAEGEDGYLEQIRTHLASALGIVRERIPQPLAHVHKYWAHGVEFCRDSDIDHPSALSHRDSGIIACSDAYTEHCGWMEGGLLSAREASRLLLQRIAA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 +"NG-VioB-MONOMER" "VioB" ["VioB"] "MSILDFPRIHFRGWARVNAPTANRDPHGHIDMASNTVAMAGEPFDLARHPTEFHRHLRSLGPRFGLDGRADPEGPFSLAEGYNAAGNNHFSWESATVSHVQWDGGEADRGDGLVGARLALWGHYNDYLRTTFNRARWVDSDPTRRDAAQIYAGQFTISPAGAGPGTPWLFTADIDDSHGARWTRGGHIAERGGHFLDEEFGLARLFQFSVPKDHPHFLFHPGPFDSEAWRRLQLALEDDDVLGLTVQYALFNMSTPPQPNSPVFHDMVGVVGLWRRGELASYPAGRLLRPRQPGLGDLTLRVSGGRVALNLACAIPFSTRAAQPSAPDRLTPDLGAKLPLGDLLLRDEDGALLARVPQALYQDYWTNHGIVDLPLLREPRGSLTLSSELAEWREQDWVTQSDASNLYLEAPDRRHGRFFPESIALRSYFRGEARARPDIPHRIEGMGLVGVESRQDGDAAEWRLTGLRPGPARIVLDDGAEAIPLRVLPDDWALDDATVEEVDYAFLYRHVMAYYELVYPFMSDKVFSLADRCKCETYARLMWQMCDPQNRNKSYYMPSTRELSAPKARLFLKYLAHVEGQARLQAPPPAGPARIESKAQLAAELRKAVDLELSVMLQYLYAAYSIPNYAQGQQRVRDGAWTAEQLQLACGSGDRRRDGGIRAALLEIAHEEMIHYLVVNNLLMALGEPFYAGVPLMGEAARQAFGLDTEFALEPFSESTLARFVRLEWPHFIPAPGKSIADCYAAIRQAFLDLPDLFGGEAGKRGGEHHLFLNELTNRAHPGYQLEVFDRDSALFGIAFVTDQGEGGALDSPHYEHSHFQRLREMSARIMAQSAPFEPALPALRNPVLDESPGCQRVADGRARALMALYQGVYELMFAMMAQHFAVKPLGSLRRSRLMNAAIDLMTGLLRPLSCALMNLPSGIAGRTAGPPLPGPVDTRSYDDYALGCRMLARRCERLLEQASMLEPGWLPDAQMELLDFYRRQMLDLACGKLSREA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 +"NG-VioC-MONOMER" "VioC" ["VioC"] "MKRAIIVGGGLAGGLTAIYLAKRGYEVHVVEKRGDPLRDLSSYVDVVSSRAIGVSMTVRGIKSVLAAGIPRAELDACGEPIVAMAFSVGGQYRMRELKPLEDFRPLSLNRAAFQKLLNKYANLAGVRYYFEHKCLDVDLDGKSVLIQGKDGQPQRLQGDMIIGADGAHSAVRQAMQSGLRRFEFQQTFFRHGYKTLVLPDAQALGYRKDTLYFFGMDSGGLFAGRAATIPDGSVSIAVCLPYSGSPSLTTTDEPTMRAFFDRYFGGLPRDARDEMLRQFLAKPSNDLINVRSSTFHYKGNVLLLGDAAHATAPFLGQGMNMALEDARTFVELLDRHQGDQDKAFPEFTELRKVQADAMQDMARANYDVLSCSNPIFFMRARYTRYMHSKFPGLYPPDMAEKLYFTSEPYDRLQQIQRKQNVWYKIGRVN" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 +"NG-VioD-MONOMER" "VioD" ["VioD"] "MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHHNEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGELPLADYDLVVLANGVNHKTAHFTEALVPQVDYGRNKYIWYGTSQLFDQMNLVFRTHGKDIFIAHAYKYSDTMSTFIVECSEETYARARLGEMSEEASAEYVAKVFQAELGGHGLVSQPGLGWRNFMTLSHDRCHDGKLVLLGDALQSGHFSIGHGTTMAVVVAQLLVKALCTEDGVPAALKRFEERALPLVQLFRGHADNSRVWFETVEERMHLSSAEFVQSFDARRKSLPPMPEALAQNLRYALQR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 +"NG-VioE-MONOMER" "VioE" ["VioE"] "MENREPPLLPARWSSAYVSYWSPMLPDDQLTSGYCWFDYERDICRIDGLFNPWSERDTGYRLWMSEVGNAASGRTWKQKVAYGRERTALGEQLCERPLDDETGPFAELFLPRDVLRRLGARHIGRRVVLGREADGWRYQRPGKGPSTLYLDAASGTPLRMVTGDEASRASLRDFPNVSEAEIPDAVFAAKR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE/rnas.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE/rnas.tsv new file mode 100644 index 000000000..d42b53ea1 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE/rnas.tsv @@ -0,0 +1,6 @@ +"id" "common_name" "synonyms" "type" "modified_forms" "gene_id" "monomer_ids" "anticodon" "coding_segments" +"NG001_RNA" "vioA" ["vioA"] "mRNA" [] "NG001" ["NG-VioA-MONOMER"] null [] +"NG002_RNA" "vioB" ["vioB"] "mRNA" [] "NG002" ["NG-VioB-MONOMER"] null [] +"NG003_RNA" "vioC" ["vioC"] "mRNA" [] "NG003" ["NG-VioC-MONOMER"] null [] +"NG004_RNA" "vioD" ["vioD"] "mRNA" [] "NG004" ["NG-VioD-MONOMER"] null [] +"NG005_RNA" "vioE" ["vioE"] "mRNA" [] "NG005" ["NG-VioE-MONOMER"] null [] diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE/rnaseq_rsem_tpm_mean.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE/rnaseq_rsem_tpm_mean.tsv new file mode 100644 index 000000000..4f18db9c9 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE/rnaseq_rsem_tpm_mean.tsv @@ -0,0 +1,6 @@ +"Gene" "M9 Glucose minus AAs" "N limited Glucose minus AAs" "M9 Glucose plus AAs" "M9 Glycerol plus AAs" "P limited Glucose plus AAs" +"NG001" 0.01 0.01 0.01 0.01 0.01 +"NG002" 0.01 0.01 0.01 0.01 0.01 +"NG003" 0.01 0.01 0.01 0.01 0.01 +"NG004" 0.01 0.01 0.01 0.01 0.01 +"NG005" 0.01 0.01 0.01 0.01 0.01 diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/gene_sequences.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/gene_sequences.tsv new file mode 100644 index 000000000..81eff1ae2 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/gene_sequences.tsv @@ -0,0 +1,6 @@ +"id" "symbol" "synonyms" "gene_seq" +"NG001" "vioA" ["vioA"] "ATGAAACATTCTTCCGATATCTGCATTGTTGGTGCTGGTATTTCTGGTTTGACGTGCGCAAGCCATCTGCTGGACAGCCCGGCATGCCGTGGTCTGAGCCTGCGTATCTTTGACATGCAGCAAGAAGCCGGTGGCCGTATCCGCAGCAAAATGCTGGATGGTAAGGCAAGCATTGAACTGGGCGCAGGTCGCTACTCCCCTCAGTTGCACCCGCATTTCCAAAGCGCAATGCAGCACTATAGCCAAAAGAGCGAAGTCTATCCGTTCACCCAGTTGAAGTTCAAATCTCACGTGCAGCAAAAGCTGAAGCGCGCCATGAATGAACTGTCCCCGCGTCTGAAAGAGCATGGTAAAGAGAGCTTTTTGCAGTTTGTCAGCCGTTATCAAGGTCACGATAGCGCGGTTGGTATGATCCGCTCTATGGGTTACGACGCACTGTTCCTGCCGGATATCAGCGCAGAAATGGCCTACGACATTGTGGGTAAGCACCCGGAGATCCAGAGCGTGACGGACAACGACGCGAACCAATGGTTTGCAGCGGAAACGGGCTTTGCTGGTCTGATTCAGGGCATCAAGGCTAAGGTTAAGGCGGCAGGTGCGCGTTTTAGCCTGGGTTATCGTCTGCTGAGCGTCCGTACCGACGGTGACGGCTACCTGCTGCAACTGGCAGGTGACGACGGCTGGAAACTGGAGCACCGTACCCGCCATCTGATTCTGGCGATTCCGCCGAGCGCGATGGCGGGTTTGAATGTTGATTTTCCAGAAGCCTGGTCCGGTGCGCGCTATGGCAGCCTGCCGCTGTTTAAGGGCTTTCTGACGTACGGTGAGCCGTGGTGGTTGGACTACAAACTGGACGATCAGGTGCTGATTGTTGACAACCCGCTGCGCAAAATCTATTTCAAAGGCGATAAGTACCTGTTCTTCTATACCGATAGCGAGATGGCGAATTACTGGCGCGGTTGTGTCGCGGAGGGCGAGGACGGTTACCTGGAGCAAATTCGCACCCATTTGGCTAGCGCACTGGGTATCGTCCGTGAACGTATCCCGCAACCGCTGGCACACGTTCACAAGTATTGGGCGCACGGCGTTGAGTTTTGCCGTGATTCTGATATTGACCACCCGAGCGCACTGTCTCATCGCGACAGCGGTATCATCGCGTGCTCCGATGCGTACACGGAGCATTGTGGTTGGATGGAGGGCGGTCTGCTGAGCGCCCGTGAGGCAAGCCGTCTGCTGTTGCAGCGTATCGCCGCGTGA" +"NG002" "vioB" ["vioB"] "ATGAGCATTCTGGATTTCCCGCGTATCCACTTCCGTGGCTGGGCCCGTGTCAATGCGCCGACCGCGAACCGCGATCCGCACGGCCACATCGATATGGCCAGCAATACCGTGGCGATGGCGGGTGAGCCGTTCGACCTGGCACGCCATCCTACGGAGTTCCACCGTCACCTGCGCTCCCTGGGTCCGCGCTTCGGCTTGGATGGTCGTGCTGACCCGGAAGGCCCGTTCAGCCTGGCCGAGGGCTACAACGCTGCCGGTAACAACCACTTTTCGTGGGAGAGCGCAACCGTTAGCCACGTGCAATGGGATGGCGGTGAGGCGGATCGTGGTGACGGTCTGGTCGGTGCTCGTTTGGCACTGTGGGGTCACTACAATGATTATCTGCGTACCACCTTCAATCGTGCTCGTTGGGTCGACAGCGACCCGACGCGCCGTGACGCTGCACAAATCTATGCGGGCCAATTCACCATTAGCCCGGCTGGTGCCGGTCCGGGTACGCCGTGGCTGTTTACGGCAGACATTGATGATAGCCATGGTGCACGTTGGACGCGTGGCGGCCACATTGCAGAGCGTGGCGGCCACTTCTTGGATGAAGAGTTTGGTCTGGCACGCCTGTTTCAGTTCTCTGTGCCGAAAGATCACCCACATTTTCTGTTTCACCCGGGTCCGTTTGATTCCGAGGCCTGGCGTCGTCTGCAATTGGCTCTGGAGGATGACGACGTTCTGGGTCTGACCGTGCAATATGCGTTGTTCAATATGAGCACCCCGCCTCAGCCGAACAGCCCGGTTTTTCACGATATGGTCGGTGTTGTCGGTCTGTGGCGTCGTGGTGAACTGGCGAGCTACCCGGCTGGTCGTCTGCTGCGTCCGCGTCAACCGGGTCTGGGTGACCTGACCCTGCGCGTCAACGGTGGTCGCGTTGCGCTGAATTTGGCGTGTGCCATTCCGTTCAGCACTCGTGCCGCGCAGCCAAGCGCACCGGACCGCCTGACCCCGGACCTGGGTGCCAAACTGCCGCTGGGCGATCTGCTGCTGCGTGATGAGGACGGCGCACTGTTGGCACGTGTGCCGCAGGCTCTGTACCAAGACTATTGGACGAATCACGGTATTGTGGACCTGCCGCTGCTGCGCGAACCGCGTGGTAGCTTGACCCTGAGCAGCGAACTGGCGGAGTGGCGTGAGCAAGACTGGGTCACCCAAAGCGACGCGTCTAACCTGTACCTGGAGGCACCGGATCGCCGTCACGGTCGCTTTTTCCCTGAGAGCATCGCGCTGCGCAGCTACTTTCGCGGTGAAGCGCGTGCGCGTCCGGATATCCCGCATCGTATCGAGGGCATGGGCCTGGTCGGCGTCGAATCTCGTCAGGATGGCGACGCTGCGGAATGGCGTCTGACGGGTCTGCGTCCGGGTCCGGCACGCATTGTTCTGGACGATGGTGCCGAGGCGATCCCTCTGCGTGTTCTGCCTGACGATTGGGCGCTGGATGACGCGACCGTCGAAGAAGTGGATTACGCCTTTTTGTACCGCCACGTTATGGCGTATTACGAGCTGGTGTATCCATTCATGAGCGACAAGGTGTTTTCCCTGGCTGATCGTTGCAAATGTGAAACGTACGCACGTCTGATGTGGCAGATGTGTGATCCGCAGAACCGCAACAAGTCCTATTACATGCCGAGCACCCGCGAACTGTCGGCACCGAAAGCTCGTTTGTTCTTGAAGTATCTGGCCCACGTGGAAGGCCAGGCACGCCTGCAAGCACCTCCGCCAGCGGGTCCGGCACGCATTGAATCTAAAGCCCAGTTGGCGGCAGAGCTGCGTAAAGCCGTCGACCTGGAGCTGTCTGTGATGCTGCAATACCTGTACGCGGCGTATAGCATTCCGAACTATGCACAGGGCCAACAACGTGTTCGTGACGGTGCGTGGACCGCCGAGCAGCTGCAACTGGCGTGCGGTAGCGGTGACCGTCGCCGTGATGGCGGTATTCGTGCAGCACTGCTGGAAATTGCTCATGAAGAAATGATTCATTACCTGGTCGTTAACAACCTGCTGATGGCCCTGGGCGAGCCGTTCTACGCGGGTGTCCCGCTGATGGGCGAAGCGGCACGTCAGGCGTTTGGCCTGGACACCGAGTTCGCTCTGGAACCGTTTAGCGAAAGCACGCTGGCACGTTTTGTTCGTCTGGAATGGCCGCACTTTATCCCAGCACCGGGCAAATCCATCGCGGACTGCTATGCCGCCATTCGTCAGGCGTTTTTGGATCTGCCGGACTTGTTTGGTGGCGAGGCAGGTAAGCGTGGCGGTGAACACCACCTGTTCCTGAATGAGCTGACCAACCGTGCGCATCCGGGTTATCAACTGGAAGTTTTCGATCGCGACTCGGCGCTGTTTGGTATTGCATTTGTGACCGATCAGGGCGAAGGTGGCGCTCTGGACAGCCCGCACTACGAACATAGCCATTTTCAACGTCTGCGTGAAATGAGCGCGCGTATCATGGCTCAAAGCGCACCGTTCGAACCGGCGCTGCCGGCGTTGCGTAATCCGGTTCTGGATGAGAGCCCGGGTTGCCAACGTGTCGCAGACGGTCGTGCGCGTGCGCTGATGGCATTGTACCAAGGCGTTTATGAGCTGATGTTTGCGATGATGGCGCAGCACTTCGCCGTGAAACCGCTGGGTAGCTTGCGTCGCAGCCGCCTGATGAACGCAGCAATCGATCTGATGACCGGTCTGTTGCGTCCGCTGAGCTGCGCGCTGATGAACCTGCCAAGCGGCATCGCCGGTCGCACGGCCGGTCCGCCGCTGCCGGGTCCGGTTGACACCCGTAGCTATGACGACTACGCGCTGGGCTGTCGCATGCTGGCACGCCGTTGCGAGCGTCTGCTGGAGCAGGCGAGCATGCTGGAACCGGGTTGGCTGCCGGATGCGCAGATGGAGCTGCTGGATTTCTATCGTCGCCAAATGCTGGACTTGGCGTGCGGCAAACTGAGCCGCGAGGCCTAA" +"NG003" "vioC" ["vioC"] "ATGAAACGTGCGATTATCGTTGGTGGCGGCCTGGCGGGTGGCCTGACCGCGATCTACCTGGCGAAGCGTGGCTACGAAGTGCACGTCGTGGAGAAGCGTGGTGATCCTCTGCGCGATCTGAGCTCTTACGTGGACGTTGTTAGCAGCCGTGCGATCGGCGTGAGCATGACCGTTCGTGGTATCAAGAGCGTTTTGGCTGCGGGCATTCCGCGTGCAGAGCTGGATGCGTGTGGCGAACCGATCGTGGCAATGGCTTTCTCCGTGGGTGGTCAGTATCGCATGCGCGAACTGAAGCCGTTGGAGGATTTCCGTCCGCTGAGCTTGAACCGTGCGGCGTTTCAAAAGCTGCTGAACAAATACGCGAACCTGGCAGGCGTTCGTTACTACTTTGAGCATAAGTGCCTGGATGTTGACCTGGATGGTAAGAGCGTGTTGATTCAGGGCAAAGATGGTCAGCCGCAGCGTCTGCAAGGTGACATGATTATCGGTGCGGATGGCGCCCACAGCGCCGTCCGTCAGGCGATGCAGAGCGGCCTGCGTCGTTTCGAGTTCCAGCAAACGTTCTTCCGCCATGGCTACAAAACCCTGGTTTTGCCGGACGCGCAAGCACTGGGTTACCGTAAAGACACGCTGTACTTTTTCGGCATGGATTCCGGTGGCCTGTTCGCGGGTCGTGCGGCTACGATCCCAGATGGTAGCGTCAGCATCGCCGTTTGCCTGCCGTACTCGGGTAGCCCTTCCCTGACGACCACCGACGAACCGACGATGCGTGCGTTCTTCGATCGTTACTTCGGTGGCCTGCCGCGTGACGCGCGTGACGAAATGCTGCGTCAGTTTCTGGCGAAGCCGAGCAACGACCTGATTAACGTGCGCTCTAGCACCTTTCACTATAAGGGTAATGTGCTGTTGCTGGGTGATGCTGCGCATGCGACTGCGCCGTTCCTGGGTCAGGGTATGAACATGGCGCTGGAGGACGCCCGCACGTTTGTCGAGCTGCTGGACCGCCACCAGGGCGACCAAGACAAAGCCTTTCCGGAGTTCACGGAGCTGCGCAAAGTCCAGGCAGACGCAATGCAAGACATGGCTCGCGCCAACTATGACGTTTTGAGCTGCTCGAACCCGATCTTTTTCATGCGTGCGCGTTACACGCGTTACATGCATTCCAAGTTTCCGGGCCTGTATCCGCCGGATATGGCCGAGAAACTGTACTTTACGAGCGAGCCGTACGATCGTCTGCAACAAATCCAGCGTAAACAGAATGTTTGGTACAAGATTGGTCGCGTGAATTGA" +"NG004" "vioD" ["vioD"] "ATGAAGATTCTGGTCATTGGTGCTGGTCCAGCTGGTCTGGTTTTCGCATCCCAACTGAAGCAGGCACGCCCTTTGTGGGCCATTGACATCGTGGAGAAGAATGACGAGCAAGAAGTGCTGGGCTGGGGTGTCGTGCTGCCTGGCCGTCCGGGTCAGCACCCGGCGAACCCGCTGTCCTATCTGGATGCACCGGAGCGTCTGAATCCGCAATTTCTGGAGGACTTCAAACTGGTGCATCATAATGAGCCGTCCTTGATGTCCACGGGCGTTTTGTTGTGCGGCGTGGAGCGTCGCGGTCTGGTTCACGCGCTGCGCGATAAGTGCCGCAGCCAAGGCATTGCTATTCGTTTCGAAAGCCCGTTGCTGGAACACGGTGAGCTGCCGCTGGCGGACTATGATCTGGTGGTCCTGGCTAATGGTGTTAATCACAAAACCGCGCATTTCACCGAGGCTCTGGTCCCGCAGGTGGACTACGGCCGCAATAAGTACATTTGGTATGGCACTAGCCAGCTGTTCGATCAGATGAATCTGGTTTTTCGTACCCATGGTAAAGATATCTTTATCGCGCATGCCTATAAGTATAGCGATACCATGAGCACGTTCATTGTCGAATGTAGCGAAGAGACTTACGCACGCGCACGCCTGGGCGAAATGTCCGAAGAGGCGAGCGCAGAATACGTTGCTAAGGTGTTCCAGGCCGAGCTGGGTGGTCACGGCCTGGTGAGCCAGCCGGGTCTGGGTTGGCGTAACTTCATGACGTTGTCTCATGACCGTTGTCATGATGGTAAGTTGGTTCTGCTGGGTGACGCGCTGCAAAGCGGTCACTTTAGCATCGGCCACGGCACCACGATGGCCGTGGTGGTGGCGCAGCTGCTGGTTAAAGCGCTGTGTACCGAAGATGGTGTGCCTGCCGCGCTGAAACGTTTCGAAGAGCGTGCCCTGCCGCTGGTGCAGTTGTTCCGTGGCCACGCAGACAACAGCCGCGTTTGGTTCGAAACCGTCGAAGAGCGCATGCACCTGTCCTCGGCGGAATTTGTGCAAAGCTTCGACGCACGCCGCAAAAGCCTGCCGCCGATGCCGGAAGCACTGGCGCAGAATCTGCGTTATGCTTTGCAGCGCTGA" +"NG005" "vioE" ["vioE"] "ATGGAGAACCGTGAGCCACCACTGTTGCCAGCCCGTTGGAGCAGCGCCTATGTCTCTTATTGGAGCCCGATGCTGCCGGATGACCAGCTGACCAGCGGCTATTGCTGGTTCGACTATGAACGTGACATCTGTCGTATTGACGGCCTGTTCAATCCGTGGAGCGAGCGTGATACTGGTTATCGCCTGTGGATGTCGGAGGTTGGTAATGCGGCCAGCGGCCGTACCTGGAAACAAAAAGTCGCCTATGGTCGTGAGCGTACCGCCCTGGGTGAACAGCTGTGTGAGCGTCCGCTGGATGATGAGACTGGCCCTTTTGCCGAATTGTTCCTGCCACGCGATGTCCTGCGCCGTCTGGGTGCCCGTCACATTGGCCGTCGCGTGGTTCTGGGTCGCGAAGCGGACGGTTGGCGTTACCAGCGCCCAGGTAAAGGTCCGAGCACCCTGTACCTGGATGCGGCGAGCGGCACTCCACTGCGCATGGTCACCGGCGATGAAGCGTCGCGTGCAAGCCTGCGTGATTTTCCGAATGTGAGCGAGGCGGAGATCCCGGACGCGGTTTTCGCGGCCAAGCGCTAA" diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/genes.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/genes.tsv new file mode 100644 index 000000000..d297cef75 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/genes.tsv @@ -0,0 +1,6 @@ +"id" "symbol" "synonyms" "left_end_pos" "right_end_pos" "direction" "rna_ids" +"NG001" "vioA" ["vioA"] 0 1256 "+" ["NG001_RNA"] +"NG002" "vioB" ["vioB"] 1257 4253 "+" ["NG002_RNA"] +"NG003" "vioC" ["vioC"] 4254 5543 "+" ["NG003_RNA"] +"NG004" "vioD" ["vioD"] 5544 6665 "+" ["NG004_RNA"] +"NG005" "vioE" ["vioE"] 6666 7241 "+" ["NG005_RNA"] diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/insertion_location.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/insertion_location.tsv new file mode 100644 index 000000000..61a4aa48e --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/insertion_location.tsv @@ -0,0 +1,2 @@ +"subdirectory" "insertion_pos" "direction" +"vioA-E" 400000 "+" diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolic_reactions_new.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolic_reactions_new.tsv new file mode 100644 index 000000000..480cd4379 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolic_reactions_new.tsv @@ -0,0 +1,7 @@ +"id" "stoichiometry" "direction" "catalyzed_by" "substrate" "kcat" "km" +"rxnvio1" {"TRP[c]": -1, "OXYGEN-MOLECULE[c]": -1, "CPD-11890[c]": 1, "HYDROGEN-PEROXIDE[c]": 1, "PROTON[c]": 1} "L2R" ["NG-VioA-MONOMER[c]"] ["TRP[c]"] 3.38 31 +"rxnvio2" {"CPD-11890[c]": -2, "HYDROGEN-PEROXIDE[c]": -1, "CPD-19471[c]": 1, "WATER[c]": 2} "L2R" ["NG-VioB-MONOMER[c]"] ["CPD-11890[c]"] 0.21 20 +"rxnvio3" {"CPD-19471[c]": -1, "PROTON[c]": -2, "CPD-14320[c]": 1, "AMMONIUM[c]": 1, "CARBON-DIOXIDE[c]": 1} "L2R" ["NG-VioE-MONOMER[c]"] ["CPD-19471[c]"] 0.116 7 +"rxnvio4" {"CPD-14320[c]": -1, "NADH[c]": -1, "PROTON[c]": -1, "OXYGEN-MOLECULE[c]": -1, "CPD-14319[c]": 1, "NAD[c]": 1, "WATER[c]": 1} "L2R" ["NG-VioD-MONOMER[c]"] ["CPD-14320[c]"] 0.035 5 +"rxnvio5" {"CPD-14319[c]": -1, "NADH[c]": -1, "OXYGEN-MOLECULE[c]": -1, "PROTON[c]": -1, "CPD-14324[c]": 1, "NAD[c]": 1, "WATER[c]": 1} "L2R" ["NG-VioC-MONOMER[c]"] ["CPD-14319[c]"] 0.013 5 +"rxnvio6" {"CPD-14324[c]": -1, "OXYGEN-MOLECULE[c]": -1, "PROTON[c]": -1, "VIOLACEIN[c]": 1, "CARBON-DIOXIDE[c]": 1, "WATER[c]": 1} "L2R" [] ["CPD-14324[c]"] 1 1 diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolites.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolites.tsv new file mode 100644 index 000000000..0da225c2b --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolites.tsv @@ -0,0 +1,11 @@ +"id" "common_name" "synonyms" "chemical_formula" "mw" "molecular_charge" "_smiles" +"CPD-11890" "2-IMINO-3-(INDOL-3-yl)PROPANOATE" [] "C11H9N2O2" 201.204 -1 +"CPD-14320" "PROTODEOXYVIOLACEINATE" [] "C21H14N3O2" 340.361 -1 +"CPD-14319" "PROTOVIOLACEINATE" [] "C21H14N3O3" 356.361 -1 +"CPD-14324" "VIOLACEINATE" [] "C21H14N3O4" 372.361 -1 +"VIOLACEIN" "VIOLACEIN" [] "C20H13N3O3" 343.343 0 +"CPD-19471" "N-[2-(carboxylatoamino)-1,2-bis(1H-indol-3-yl)ethyl]carbamate" [] "C22H16N4O4" 400.393 -2 +"CPD-14323" "DEOXYVIOLACEINATE" [] "C21H14N3O3" 356.363 -1 +"CPD-14318" "DEOXYVIOLACEIN" [] "C20H13N3O2" 327.345 0 +"CPD-14321" "PROVIOLACEIN" [] "C20H13N3O2" 327.345 0 +"CPD-14322" "PRODEOXYVIOLACEIN" [] "C20H13N3O" 311.345 0 diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/proteins.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/proteins.tsv new file mode 100644 index 000000000..33ae29fa2 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/proteins.tsv @@ -0,0 +1,6 @@ +"id" "common_name" "synonyms" "seq" "experimental_compartment" "computational_compartment" "cleavage_of_initial_methionine" "selenocysteine_at_opal" "protein_feature_cofactors" "in_complex" +"NG-VioA-MONOMER" "VioA" ["VioA"] "MKHSSDICIVGAGISGLTCASHLLDSPACRGLSLRIFDMQQEAGGRIRSKMLDGKASIELGAGRYSPQLHPHFQSAMQHYSQKSEVYPFTQLKFKSHVQQKLKRAMNELSPRLKEHGKESFLQFVSRYQGHDSAVGMIRSMGYDALFLPDISAEMAYDIVGKHPEIQSVTDNDANQWFAAETGFAGLIQGIKAKVKAAGARFSLGYRLLSVRTDGDGYLLQLAGDDGWKLEHRTRHLILAIPPSAMAGLNVDFPEAWSGARYGSLPLFKGFLTYGEPWWLDYKLDDQVLIVDNPLRKIYFKGDKYLFFYTDSEMANYWRGCVAEGEDGYLEQIRTHLASALGIVRERIPQPLAHVHKYWAHGVEFCRDSDIDHPSALSHRDSGIIACSDAYTEHCGWMEGGLLSAREASRLLLQRIAA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 +"NG-VioB-MONOMER" "VioB" ["VioB"] "MSILDFPRIHFRGWARVNAPTANRDPHGHIDMASNTVAMAGEPFDLARHPTEFHRHLRSLGPRFGLDGRADPEGPFSLAEGYNAAGNNHFSWESATVSHVQWDGGEADRGDGLVGARLALWGHYNDYLRTTFNRARWVDSDPTRRDAAQIYAGQFTISPAGAGPGTPWLFTADIDDSHGARWTRGGHIAERGGHFLDEEFGLARLFQFSVPKDHPHFLFHPGPFDSEAWRRLQLALEDDDVLGLTVQYALFNMSTPPQPNSPVFHDMVGVVGLWRRGELASYPAGRLLRPRQPGLGDLTLRVSGGRVALNLACAIPFSTRAAQPSAPDRLTPDLGAKLPLGDLLLRDEDGALLARVPQALYQDYWTNHGIVDLPLLREPRGSLTLSSELAEWREQDWVTQSDASNLYLEAPDRRHGRFFPESIALRSYFRGEARARPDIPHRIEGMGLVGVESRQDGDAAEWRLTGLRPGPARIVLDDGAEAIPLRVLPDDWALDDATVEEVDYAFLYRHVMAYYELVYPFMSDKVFSLADRCKCETYARLMWQMCDPQNRNKSYYMPSTRELSAPKARLFLKYLAHVEGQARLQAPPPAGPARIESKAQLAAELRKAVDLELSVMLQYLYAAYSIPNYAQGQQRVRDGAWTAEQLQLACGSGDRRRDGGIRAALLEIAHEEMIHYLVVNNLLMALGEPFYAGVPLMGEAARQAFGLDTEFALEPFSESTLARFVRLEWPHFIPAPGKSIADCYAAIRQAFLDLPDLFGGEAGKRGGEHHLFLNELTNRAHPGYQLEVFDRDSALFGIAFVTDQGEGGALDSPHYEHSHFQRLREMSARIMAQSAPFEPALPALRNPVLDESPGCQRVADGRARALMALYQGVYELMFAMMAQHFAVKPLGSLRRSRLMNAAIDLMTGLLRPLSCALMNLPSGIAGRTAGPPLPGPVDTRSYDDYALGCRMLARRCERLLEQASMLEPGWLPDAQMELLDFYRRQMLDLACGKLSREA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 +"NG-VioC-MONOMER" "VioC" ["VioC"] "MKRAIIVGGGLAGGLTAIYLAKRGYEVHVVEKRGDPLRDLSSYVDVVSSRAIGVSMTVRGIKSVLAAGIPRAELDACGEPIVAMAFSVGGQYRMRELKPLEDFRPLSLNRAAFQKLLNKYANLAGVRYYFEHKCLDVDLDGKSVLIQGKDGQPQRLQGDMIIGADGAHSAVRQAMQSGLRRFEFQQTFFRHGYKTLVLPDAQALGYRKDTLYFFGMDSGGLFAGRAATIPDGSVSIAVCLPYSGSPSLTTTDEPTMRAFFDRYFGGLPRDARDEMLRQFLAKPSNDLINVRSSTFHYKGNVLLLGDAAHATAPFLGQGMNMALEDARTFVELLDRHQGDQDKAFPEFTELRKVQADAMQDMARANYDVLSCSNPIFFMRARYTRYMHSKFPGLYPPDMAEKLYFTSEPYDRLQQIQRKQNVWYKIGRVN" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 +"NG-VioD-MONOMER" "VioD" ["VioD"] "MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHHNEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGELPLADYDLVVLANGVNHKTAHFTEALVPQVDYGRNKYIWYGTSQLFDQMNLVFRTHGKDIFIAHAYKYSDTMSTFIVECSEETYARARLGEMSEEASAEYVAKVFQAELGGHGLVSQPGLGWRNFMTLSHDRCHDGKLVLLGDALQSGHFSIGHGTTMAVVVAQLLVKALCTEDGVPAALKRFEERALPLVQLFRGHADNSRVWFETVEERMHLSSAEFVQSFDARRKSLPPMPEALAQNLRYALQR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 +"NG-VioE-MONOMER" "VioE" ["VioE"] "MENREPPLLPARWSSAYVSYWSPMLPDDQLTSGYCWFDYERDICRIDGLFNPWSERDTGYRLWMSEVGNAASGRTWKQKVAYGRERTALGEQLCERPLDDETGPFAELFLPRDVLRRLGARHIGRRVVLGREADGWRYQRPGKGPSTLYLDAASGTPLRMVTGDEASRASLRDFPNVSEAEIPDAVFAAKR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/rnas.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/rnas.tsv new file mode 100644 index 000000000..d42b53ea1 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/rnas.tsv @@ -0,0 +1,6 @@ +"id" "common_name" "synonyms" "type" "modified_forms" "gene_id" "monomer_ids" "anticodon" "coding_segments" +"NG001_RNA" "vioA" ["vioA"] "mRNA" [] "NG001" ["NG-VioA-MONOMER"] null [] +"NG002_RNA" "vioB" ["vioB"] "mRNA" [] "NG002" ["NG-VioB-MONOMER"] null [] +"NG003_RNA" "vioC" ["vioC"] "mRNA" [] "NG003" ["NG-VioC-MONOMER"] null [] +"NG004_RNA" "vioD" ["vioD"] "mRNA" [] "NG004" ["NG-VioD-MONOMER"] null [] +"NG005_RNA" "vioE" ["vioE"] "mRNA" [] "NG005" ["NG-VioE-MONOMER"] null [] diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/rnaseq_rsem_tpm_mean.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/rnaseq_rsem_tpm_mean.tsv new file mode 100644 index 000000000..4f18db9c9 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/rnaseq_rsem_tpm_mean.tsv @@ -0,0 +1,6 @@ +"Gene" "M9 Glucose minus AAs" "N limited Glucose minus AAs" "M9 Glucose plus AAs" "M9 Glycerol plus AAs" "P limited Glucose plus AAs" +"NG001" 0.01 0.01 0.01 0.01 0.01 +"NG002" 0.01 0.01 0.01 0.01 0.01 +"NG003" 0.01 0.01 0.01 0.01 0.01 +"NG004" 0.01 0.01 0.01 0.01 0.01 +"NG005" 0.01 0.01 0.01 0.01 0.01 diff --git a/reconstruction/ecoli/knowledge_base_raw.py b/reconstruction/ecoli/knowledge_base_raw.py index 61ca53382..1c25f451d 100644 --- a/reconstruction/ecoli/knowledge_base_raw.py +++ b/reconstruction/ecoli/knowledge_base_raw.py @@ -241,6 +241,11 @@ def __init__(self, operons_on: bool, remove_rrna_operons: bool, remove_rrff: boo new_gene_shared_files = ['genes', 'rnas', 'proteins', 'rna_half_lives', 'protein_half_lives_measured'] + + if os.path.isfile(os.path.join(FLAT_DIR+'/'+new_gene_path, 'metabolic_reactions_new.tsv')): + self.list_of_dict_filenames.append(os.path.join(new_gene_path, 'metabolic_reactions_new.tsv')) + new_gene_shared_files.append('metabolites') + for f in new_gene_shared_files: file_path = os.path.join(new_gene_path, f + '.tsv') """ @@ -389,14 +394,15 @@ def _join_data(self): added_data = getattr(added_data, attr) # Check columns are the same for each dataset - col_diff = set(data[0].keys()).symmetric_difference(added_data[0].keys()) - if col_diff: - raise ValueError(f'Could not join datasets {data_attr} and {attr_to_add} ' - f'because columns do not match (different columns: {col_diff}).') - - # Join datasets - for row in added_data: - data.append(row) + if added_data: + col_diff = set(data[0].keys()).symmetric_difference(added_data[0].keys()) + if col_diff: + raise ValueError(f'Could not join datasets {data_attr} and {attr_to_add} ' + f'because columns do not match (different columns: {col_diff}).') + + # Join datasets + for row in added_data: + data.append(row) def _modify_data(self): """ diff --git a/runscripts/fireworks/fw_queue.py b/runscripts/fireworks/fw_queue.py index 04c5e34bb..6b2b11abb 100644 --- a/runscripts/fireworks/fw_queue.py +++ b/runscripts/fireworks/fw_queue.py @@ -338,7 +338,7 @@ def log_info(message): print(message) -OUT_DIRECTORY = filepath.makedirs(filepath.ROOT_PATH, "out") +OUT_DIRECTORY = filepath.makedirs('/user/work/ig13470/out/') CACHED_SIM_DATA_DIRECTORY = os.path.join(filepath.ROOT_PATH, "cached") SUBMISSION_TIME = filepath.timestamp() From 728d18340ff26783ef457c55fad73a02956bd288 Mon Sep 17 00:00:00 2001 From: ioanagherman Date: Tue, 23 Jan 2024 17:49:00 +0000 Subject: [PATCH 02/34] Added to ignore the fireworks running files --- .gitignore | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/.gitignore b/.gitignore index c99c2517d..c551e4a92 100644 --- a/.gitignore +++ b/.gitignore @@ -165,3 +165,9 @@ reconstruction/ecoli/scripts/nca/data/regulon-db/*.tsv # VSCode: .vscode/ + +# Fireworks files: +wholecell/fireworks/my_launchpad.yaml +wholecell/fireworks/my_qadapter.yaml +wholecell/fireworks/nohup.out +runscripts/fireworks/vioAE.sh \ No newline at end of file From 60502ef883de52cd900b3069e69092ad794bd7dd Mon Sep 17 00:00:00 2001 From: ioanagherman Date: Wed, 24 Jan 2024 12:43:37 +0000 Subject: [PATCH 03/34] code cleaning done --- models/ecoli/processes/external_pathway.py | 5 +-- .../dataclasses/process/external_pathway.py | 38 ++++++------------- reconstruction/ecoli/knowledge_base_raw.py | 16 ++++---- runscripts/fireworks/fw_queue.py | 2 +- 4 files changed, 21 insertions(+), 40 deletions(-) diff --git a/models/ecoli/processes/external_pathway.py b/models/ecoli/processes/external_pathway.py index 084150834..8ffd38348 100644 --- a/models/ecoli/processes/external_pathway.py +++ b/models/ecoli/processes/external_pathway.py @@ -32,8 +32,8 @@ def initialize(self, sim, sim_data): self.cell_density = sim_data.constants.cell_density.asNumber(units.g / units.L) # check if there is a new metabolic pathway to be added - print(dir(sim_data.process.metabolism_external_pathway.has_external_pathway)) if sim_data.process.metabolism_external_pathway.has_external_pathway==True: + print('There is an external metabolic pathway to be added') self.external_pathway_exists = True # Create method self.molecules_to_next_time_step = sim_data.process.metabolism_external_pathway.molecules_to_next_time_step @@ -44,7 +44,6 @@ def initialize(self, sim, sim_data): self.enzyme_names = [item for sublist in sim_data.process.metabolism_external_pathway.enzymes.values() for item in sublist] - print('Enz names ', self.enzyme_names) self.clean_enzyme = sorted([*set(list(filter(lambda item: item is not None, self.enzyme_names)))]) self.enzymes = self.bulkMoleculesView(self.clean_enzyme) @@ -66,7 +65,6 @@ def calculateRequest(self): cell_mass = (self.readFromListener("Mass", "cellMass") * units.fg).asNumber(units.g) self.cell_volume = cell_mass / self.cell_density self.dcw_to_volume = self.cell_density * (dry_mass / cell_mass) - print('Molecules dict ', self.molecule_dict) self.molecules_required, self.all_molecule_changes, self.flux = self.molecules_to_next_time_step( self.molecule_dict, self.enzymes_dict, @@ -80,4 +78,3 @@ def evolveState(self): if self.external_pathway_exists: # Increment changes in molecule counts self.molecules.countsInc(self.all_molecule_changes) - print('Updated molecule count') \ No newline at end of file diff --git a/reconstruction/ecoli/dataclasses/process/external_pathway.py b/reconstruction/ecoli/dataclasses/process/external_pathway.py index 068a99f69..27d5f6321 100644 --- a/reconstruction/ecoli/dataclasses/process/external_pathway.py +++ b/reconstruction/ecoli/dataclasses/process/external_pathway.py @@ -171,19 +171,13 @@ def _populate_derivative_and_jacobian(self): def _make_y_dy(self): '''This is building the right hand side of the ODE system using MM kinetics.''' - S = self.stoich_matrix() - - yStrings = ["y[%d]" % x for x in range(S.shape[0])] - + substrates = self.substrates + yStrings = ["y[%d]" % x for x in range(len(substrates))] y = sp.symbols(yStrings) rates = [] - for colIdx in range(S.shape[1]): - #if colIdx==0: + for colIdx in range(len(substrates)): flux = self.kcats[colIdx] * y[colIdx]/ (self.kms[colIdx] + y[colIdx]) - #else: - # flux = rates[-1] rates.append(flux) - return y, rates def _make_derivative(self): @@ -229,41 +223,36 @@ def molecules_to_next_time_step(self, moleculeDict, enzymeDict, cellVolume, subNames.append(sub[0]) for reaction in self.rxn_ids: - try: + # if the reaction has an enzyme + if self.enzymes[reaction]: enzymeCounts.append(enzymeDict[self.enzymes[reaction][0]]) enzymeNames.append(self.enzymes[reaction][0]) - except: + #this might need to be modelled differently + else: enzymeCounts.append(1) - enzymeNames.append(1) - #else: - # enzymeCounts.append(enzymeDict[self.enzymes[reaction][0]]) - # enzymeNames.append(self.enzymes[reaction][0]) + enzymeNames.append('None') + enzymeConc = np.array(enzymeCounts) / (cellVolume * nAvogadro) - s_init = np.array(subCounts) / (cellVolume * nAvogadro) + sub_init = np.array(subCounts) / (cellVolume * nAvogadro) - moleculeNames = list(moleculeDict.keys()) moleculeCounts = list(moleculeDict.values()) y_init = np.array(moleculeCounts) / (cellVolume * nAvogadro) derivatives = self.derivatives sol = scipy.integrate.solve_ivp( - lambda t, y: derivatives([0, timeStepSec], s_init, enzymeConc), [0, timeStepSec], y_init, + lambda t, y: derivatives([0, timeStepSec], sub_init, enzymeConc), [0, timeStepSec], y_init, method=method, t_eval=[0, timeStepSec], atol=1e-8) y = sol.y.T y[y < 0] = 0 yMolecules = (y * (cellVolume * nAvogadro)) #.asNumber(COUNTS_UNITS/VOLUME_UNITS) - #print(yMolecules) # Calculate changes in molecule counts for all molecules allMoleculesChanges = yMolecules[-1, :] - yMolecules[0, :] # Molecules needed are the change but only for the molecules corresponding to the negative terms in the stoich matrix moleculesNeeded = np.negative(allMoleculesChanges).clip(min=0) - #print('moleculesNeeded', moleculesNeeded) - #print('allMoleculesChanges', allMoleculesChanges) - #print('flux', self.flux) return moleculesNeeded, allMoleculesChanges, self.flux def derivatives(self, t, y, enzymeC): @@ -271,8 +260,5 @@ def derivatives(self, t, y, enzymeC): Calculate derivatives from stoichiometry and rates with argument order for solve_ivp. """ - self.flux = np.multiply(enzymeC, self._rates[0](y, t)) #MODEL_FLUX_UNITS * - first_element = self.flux[0] - for i in range(len(self.flux)): - self.flux[i] = first_element + self.flux = np.multiply(enzymeC, self._rates[0](y, t)) return self._stoich_matrix.dot(np.transpose(self.flux)) diff --git a/reconstruction/ecoli/knowledge_base_raw.py b/reconstruction/ecoli/knowledge_base_raw.py index 1c25f451d..85d9ee046 100644 --- a/reconstruction/ecoli/knowledge_base_raw.py +++ b/reconstruction/ecoli/knowledge_base_raw.py @@ -394,15 +394,13 @@ def _join_data(self): added_data = getattr(added_data, attr) # Check columns are the same for each dataset - if added_data: - col_diff = set(data[0].keys()).symmetric_difference(added_data[0].keys()) - if col_diff: - raise ValueError(f'Could not join datasets {data_attr} and {attr_to_add} ' - f'because columns do not match (different columns: {col_diff}).') - - # Join datasets - for row in added_data: - data.append(row) + col_diff = set(data[0].keys()).symmetric_difference(added_data[0].keys()) + if col_diff: + raise ValueError(f'Could not join datasets {data_attr} and {attr_to_add} ' + f'because columns do not match (different columns: {col_diff}).') + # Join datasets + for row in added_data: + data.append(row) def _modify_data(self): """ diff --git a/runscripts/fireworks/fw_queue.py b/runscripts/fireworks/fw_queue.py index 6b2b11abb..04c5e34bb 100644 --- a/runscripts/fireworks/fw_queue.py +++ b/runscripts/fireworks/fw_queue.py @@ -338,7 +338,7 @@ def log_info(message): print(message) -OUT_DIRECTORY = filepath.makedirs('/user/work/ig13470/out/') +OUT_DIRECTORY = filepath.makedirs(filepath.ROOT_PATH, "out") CACHED_SIM_DATA_DIRECTORY = os.path.join(filepath.ROOT_PATH, "cached") SUBMISSION_TIME = filepath.timestamp() From c45f4ab97bf75080e62dc957c234c1c1c2a8781e Mon Sep 17 00:00:00 2001 From: ioanagherman Date: Fri, 23 Feb 2024 10:10:01 +0000 Subject: [PATCH 04/34] pull request changes addressed --- .gitignore | 6 - models/ecoli/analysis/multigen/__init__.py | 9 +- .../flux_external_metabolic_pathway.py | 51 ++++++ .../multigen/molecules_external_pathway.py | 61 +++++++ .../analysis/multigen/new_gene_counts.py | 3 +- models/ecoli/analysis/single/__init__.py | 7 + .../single/flux_external_metabolic_pathway.py | 62 +++++++ .../single/molecules_external_pathway.py | 58 +++++++ .../ecoli/analysis/single/new_gene_counts.py | 1 + models/ecoli/analysis/variant/__init__.py | 5 + models/ecoli/listeners/fba_results.py | 15 ++ ...hway.py => metabolism_external_pathway.py} | 39 +++-- models/ecoli/sim/simulation.py | 2 +- ...hway.py => metabolism_external_pathway.py} | 99 ++++++------ .../ecoli/dataclasses/process/process.py | 2 +- .../gfp/metabolic_reactions_external.tsv | 1 + .../flat/new_gene_data/gfp/metabolites.tsv | 1 + .../gfp/protein_half_lives_measured.tsv | 1 + .../flat/new_gene_data/gfp/rna_half_lives.tsv | 1 + .../template/metabolic_reactions_external.tsv | 1 + .../new_gene_data/template/metabolites.tsv | 1 + .../vioAE/metabolic_reactions_external.tsv | 1 + .../flat/new_gene_data/vioAE/metabolites.tsv | 2 + .../vioAE/protein_half_lives_measured.tsv | 1 + .../new_gene_data/vioAE/rna_half_lives.tsv | 1 + ...w.tsv => metabolic_reactions_external.tsv} | 12 +- .../new_gene_data/vioAE_meta/metabolites.tsv | 2 +- .../protein_half_lives_measured.tsv | 1 + .../vioAE_meta/rna_half_lives.tsv | 1 + reconstruction/ecoli/knowledge_base_raw.py | 153 +++++++++--------- runscripts/external_pathway/vioAE.sh | 45 ++++++ 31 files changed, 482 insertions(+), 163 deletions(-) create mode 100644 models/ecoli/analysis/multigen/flux_external_metabolic_pathway.py create mode 100644 models/ecoli/analysis/multigen/molecules_external_pathway.py create mode 100644 models/ecoli/analysis/single/flux_external_metabolic_pathway.py create mode 100644 models/ecoli/analysis/single/molecules_external_pathway.py rename models/ecoli/processes/{external_pathway.py => metabolism_external_pathway.py} (69%) rename reconstruction/ecoli/dataclasses/process/{external_pathway.py => metabolism_external_pathway.py} (76%) create mode 100644 reconstruction/ecoli/flat/new_gene_data/gfp/metabolic_reactions_external.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/gfp/metabolites.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/gfp/protein_half_lives_measured.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/gfp/rna_half_lives.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/template/metabolic_reactions_external.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/template/metabolites.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE/metabolic_reactions_external.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE/metabolites.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE/protein_half_lives_measured.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE/rna_half_lives.tsv rename reconstruction/ecoli/flat/new_gene_data/vioAE_meta/{metabolic_reactions_new.tsv => metabolic_reactions_external.tsv} (57%) create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE_meta/protein_half_lives_measured.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE_meta/rna_half_lives.tsv create mode 100755 runscripts/external_pathway/vioAE.sh diff --git a/.gitignore b/.gitignore index c551e4a92..c99c2517d 100644 --- a/.gitignore +++ b/.gitignore @@ -165,9 +165,3 @@ reconstruction/ecoli/scripts/nca/data/regulon-db/*.tsv # VSCode: .vscode/ - -# Fireworks files: -wholecell/fireworks/my_launchpad.yaml -wholecell/fireworks/my_qadapter.yaml -wholecell/fireworks/nohup.out -runscripts/fireworks/vioAE.sh \ No newline at end of file diff --git a/models/ecoli/analysis/multigen/__init__.py b/models/ecoli/analysis/multigen/__init__.py index 8318ad898..1f418c346 100644 --- a/models/ecoli/analysis/multigen/__init__.py +++ b/models/ecoli/analysis/multigen/__init__.py @@ -12,6 +12,7 @@ "centralCarbonMetabolismScatter.py", "charging_molecules.py", "environmental_shift_fluxes.py", + "flux_external_metabolic_pathway.py", "functionalUnits.py", "functionalUnitsFC.py", "growthAffectingPolymerases.py", @@ -24,6 +25,7 @@ "massFractionToUnity.py", "massShift.py", "mene_limitations.py", + "molecules_external_pathway.py", "new_gene_counts.py", # "probProteinExistAndDouble.py", "polycistronic_transcription.py", @@ -153,5 +155,10 @@ ], 'VALIDATION': [ "proteinCountsValidation.py", - ] + ], + 'NEW_GENE': [ + "new_gene_counts.py", + "molecules_external_pathway.py", + "flux_external_metabolic_pathway.py", + ], } diff --git a/models/ecoli/analysis/multigen/flux_external_metabolic_pathway.py b/models/ecoli/analysis/multigen/flux_external_metabolic_pathway.py new file mode 100644 index 000000000..6ccd4ae9c --- /dev/null +++ b/models/ecoli/analysis/multigen/flux_external_metabolic_pathway.py @@ -0,0 +1,51 @@ +""" +Plot fluxes for the reactions in the external metabolic pathway across multiple generations +""" + +import pickle +import os + +from matplotlib import pyplot as plt +# noinspection PyUnresolvedReferences +import numpy as np + +from models.ecoli.analysis import multigenAnalysisPlot +from wholecell.analysis.analysis_tools import (exportFigure, + read_stacked_bulk_molecules, read_stacked_columns) +from wholecell.io.tablereader import TableReader + + +class Plot(multigenAnalysisPlot.MultigenAnalysisPlot): + def do_plot(self, seedOutDir, plotOutDir, plotOutFileName, simDataFile, + validationDataFile, metadata): + with open(simDataFile, 'rb') as f: + sim_data = pickle.load(f) + + if not sim_data.process.metabolism_external_pathway.has_external_pathway: + print("This simulation does not have an external pathway") + return + + cell_paths = self.ap.get_cells() + sim_dir = cell_paths[0] + plt.figure() + #for sim_dir in cell_paths: + simOutDir = os.path.join(sim_dir, 'simOut') + # Load data + time = read_stacked_columns(cell_paths, 'Main', 'time') + fluxes_external_pathway = read_stacked_columns(cell_paths, 'FBAResults', 'externalPathwayFluxes') + # Fluxes + for m in range(fluxes_external_pathway.shape[1]): + plt.plot(time / 60., fluxes_external_pathway[:, m], + label='Flux ' + str(m)) + plt.xlabel("Time (min)") + plt.ylabel("Fluxes (mmol/L/sec)") + plt.title("External Metabolic Pathway Fluxes") + plt.legend() + ### Create Plot ### + plt.tight_layout() + exportFigure(plt, plotOutDir, plotOutFileName, metadata) + plt.close('all') + + +if __name__ == '__main__': + Plot().cli() diff --git a/models/ecoli/analysis/multigen/molecules_external_pathway.py b/models/ecoli/analysis/multigen/molecules_external_pathway.py new file mode 100644 index 000000000..3fb3a322e --- /dev/null +++ b/models/ecoli/analysis/multigen/molecules_external_pathway.py @@ -0,0 +1,61 @@ +""" +Molecule counts for the molecules involved in the external pathway +""" + +import pickle +import os +import json +from matplotlib import pyplot as plt +from collections import OrderedDict +import math + +# noinspection PyUnresolvedReferences +import numpy as np + +from models.ecoli.analysis import multigenAnalysisPlot +from wholecell.analysis.analysis_tools import (exportFigure, + read_stacked_bulk_molecules, read_stacked_columns) +from wholecell.io.tablereader import TableReader + +class Plot(multigenAnalysisPlot.MultigenAnalysisPlot): + def do_plot(self, seedOutDir, plotOutDir, plotOutFileName, simDataFile, + validationDataFile, metadata): + sim_data = self.read_pickle_file(simDataFile) + + if not sim_data.process.metabolism_external_pathway.has_external_pathway: + print("This simulation does not have an external pathway") + return + + molecule_names = sim_data.process.metabolism_external_pathway.molecule_names + + cell_paths = self.ap.get_cells() + sim_dir = cell_paths[0] + plt.figure() + simOutDir = os.path.join(sim_dir, 'simOut') + + # Load data + time = read_stacked_columns(cell_paths, 'Main', 'time') + bulk_molecules = read_stacked_columns(cell_paths, 'BulkMolecules', 'counts') + + with open(os.path.join(simOutDir, 'BulkMolecules', 'attributes.json')) as f: + data = json.load(f, object_pairs_hook=OrderedDict) + data_b = data['objectNames'] + # Molecule counts + plt.figure() + plt.xlabel("Time (min)") + plt.title("Molecule counts") + print(molecule_names.shape) + + for m in range(len(molecule_names)): + plt.subplot(int(math.sqrt(len(molecule_names)))+1, int(math.sqrt(len(molecule_names)))+1, m+1) + molecule_couts = bulk_molecules[:, data_b.index(molecule_names[m])] + plt.plot(time / 60., molecule_couts) + plt.ylabel('\n'.join(molecule_names[m].split('-'))) + + ### Create Plot ### + plt.tight_layout() + exportFigure(plt, plotOutDir, plotOutFileName, metadata) + plt.close('all') + +if __name__ == '__main__': + Plot().cli() diff --git a/models/ecoli/analysis/multigen/new_gene_counts.py b/models/ecoli/analysis/multigen/new_gene_counts.py index 2b3a6c98e..17873a630 100644 --- a/models/ecoli/analysis/multigen/new_gene_counts.py +++ b/models/ecoli/analysis/multigen/new_gene_counts.py @@ -25,6 +25,7 @@ def do_plot(self, seedOutDir, plotOutDir, plotOutFileName, simDataFile, cell_paths = self.ap.get_cells() sim_dir = cell_paths[0] + print(sim_dir) simOutDir = os.path.join(sim_dir, 'simOut') # Determine new gene ids @@ -81,7 +82,7 @@ def do_plot(self, seedOutDir, plotOutDir, plotOutFileName, simDataFile, # Protein Counts plt.subplot(2, 1, 1) - if len(new_gene_monomer_ids): + if len(new_gene_monomer_ids)==1: plt.plot(time / 60., new_gene_monomer_counts, label=new_gene_monomer_ids[0]) else: diff --git a/models/ecoli/analysis/single/__init__.py b/models/ecoli/analysis/single/__init__.py index 08b36a2da..a7c4aa398 100644 --- a/models/ecoli/analysis/single/__init__.py +++ b/models/ecoli/analysis/single/__init__.py @@ -27,6 +27,7 @@ "fbaOptimizationProblem.py", "flagella_expression.py", "flux_bounds.py", + "flux_external_metabolic_pathway.py", "glucoseMassYield.py", "growthLimits.py", "inter_rnap_distance.py", @@ -40,6 +41,7 @@ "metabolites.py", "mrnaCounts.py", "mrnaVsProteinCounts.py", + "molecules_external_pathway.py", "new_gene_counts.py", "ntpCounts.py", "outer_membrane_expression.py", @@ -193,4 +195,9 @@ "inter_rnap_distance.py", "proteinCountsValidation.py", ], + 'NEW_GENE': [ + "new_gene_counts.py", + "molecules_external_pathway.py", + "flux_external_metabolic_pathway.py", + ], } diff --git a/models/ecoli/analysis/single/flux_external_metabolic_pathway.py b/models/ecoli/analysis/single/flux_external_metabolic_pathway.py new file mode 100644 index 000000000..c1733b10d --- /dev/null +++ b/models/ecoli/analysis/single/flux_external_metabolic_pathway.py @@ -0,0 +1,62 @@ +""" +Plot fluxes for the external metabolic pathway +""" + +import pickle +import os + +from matplotlib import pyplot as plt +# noinspection PyUnresolvedReferences +import numpy as np + +from models.ecoli.analysis import singleAnalysisPlot +from models.ecoli.processes.metabolism import COUNTS_UNITS, VOLUME_UNITS, TIME_UNITS, MASS_UNITS +from wholecell.analysis.analysis_tools import exportFigure, read_bulk_molecule_counts +from wholecell.io.tablereader import TableReader +from wholecell.utils import units + +FLUX_UNITS = COUNTS_UNITS / VOLUME_UNITS / TIME_UNITS +class Plot(singleAnalysisPlot.SingleAnalysisPlot): + def do_plot(self, simOutDir, plotOutDir, plotOutFileName, simDataFile, validationDataFile, metadata): + sim_data = self.read_pickle_file(simDataFile) + if not sim_data.process.metabolism_external_pathway.has_external_pathway: + print("This simulation does not have an external pathway") + return + cell_density = sim_data.constants.cell_density + + # Listeners used + main_reader = TableReader(os.path.join(simOutDir, 'Main')) + initial_time = main_reader.readAttribute('initialTime') + fba_results = TableReader(os.path.join(simOutDir, 'FBAResults')) + mass_table = TableReader(os.path.join(simOutDir, 'Mass')) + + # Load data + time = main_reader.readColumn('time') - initial_time + fluxes_external_pathway = fba_results.readColumn('externalPathwayFluxes') + + # Calculate coefficients to be used to convert flux units from + # mM/s to mmol/gCDW/h + #cell_mass = mass_table.readColumn('cellMass') + #dry_mass = mass_table.readColumn('dryMass') + #conversion_coeffs = ( + # dry_mass / cell_mass + # * cell_density.asNumber(MASS_UNITS / VOLUME_UNITS) + #) + + # Fluxes + plt.figure() + + for m in range(fluxes_external_pathway.shape[1]): + plt.plot(time / 60., fluxes_external_pathway[:, m], label='Flux '+ str(m)) + plt.xlabel("Time (min)") + plt.ylabel("Fluxes (mmol/L/sec)") + plt.title("External Metabolic Pathway Fluxes") + plt.legend() + + ### Create Plot ### + plt.tight_layout() + exportFigure(plt, plotOutDir, plotOutFileName, metadata) + plt.close('all') + +if __name__ == '__main__': + Plot().cli() diff --git a/models/ecoli/analysis/single/molecules_external_pathway.py b/models/ecoli/analysis/single/molecules_external_pathway.py new file mode 100644 index 000000000..cc2a0f3e5 --- /dev/null +++ b/models/ecoli/analysis/single/molecules_external_pathway.py @@ -0,0 +1,58 @@ +""" +Molecule counts for the molecules involved in the external pathway +""" + +import pickle +import os +import json +from matplotlib import pyplot as plt +from collections import OrderedDict +import math + +# noinspection PyUnresolvedReferences +import numpy as np + +from models.ecoli.analysis import singleAnalysisPlot +from wholecell.analysis.analysis_tools import exportFigure, read_bulk_molecule_counts +from wholecell.io.tablereader import TableReader + + +class Plot(singleAnalysisPlot.SingleAnalysisPlot): + def do_plot(self, simOutDir, plotOutDir, plotOutFileName, simDataFile, validationDataFile, metadata): + sim_data = self.read_pickle_file(simDataFile) + if not sim_data.process.metabolism_external_pathway.has_external_pathway: + print("This simulation does not have an external pathway") + return + + molecule_names = sim_data.process.metabolism_external_pathway.molecule_names + + # Listeners used + main_reader = TableReader(os.path.join(simOutDir, 'Main')) + initial_time = main_reader.readAttribute('initialTime') + bulk_molecules_table = TableReader(os.path.join(simOutDir, 'BulkMolecules')) + + # Load data + time = main_reader.readColumn('time') - initial_time + bulk_molecules = bulk_molecules_table.readColumn('counts') + + with open(os.path.join(simOutDir, 'BulkMolecules', 'attributes.json')) as f: + data = json.load(f, object_pairs_hook=OrderedDict) + data_b = data['objectNames'] + # Molecule counts + plt.figure() + plt.xlabel("Time (min)") + plt.title("Molecule counts") + + for m in range(len(molecule_names)): + plt.subplot(int(math.sqrt(len(molecule_names)))+1, int(math.sqrt(len(molecule_names)))+1, m+1) + molecule_couts = bulk_molecules[:, data_b.index(molecule_names[m])] + plt.plot(time / 60., molecule_couts) + plt.ylabel('\n'.join(molecule_names[m].split('-'))) + + ### Create Plot ### + plt.tight_layout() + exportFigure(plt, plotOutDir, plotOutFileName, metadata) + plt.close('all') + +if __name__ == '__main__': + Plot().cli() diff --git a/models/ecoli/analysis/single/new_gene_counts.py b/models/ecoli/analysis/single/new_gene_counts.py index fbefcb2a9..c2b586b47 100644 --- a/models/ecoli/analysis/single/new_gene_counts.py +++ b/models/ecoli/analysis/single/new_gene_counts.py @@ -26,6 +26,7 @@ def do_plot(self, simOutDir, plotOutDir, plotOutFileName, simDataFile, monomer_sim_data['id'])) new_gene_monomer_ids = [mRNA_monomer_id_dict.get(mRNA_id) for mRNA_id in new_gene_mRNA_ids] + print(new_gene_monomer_ids) if len(new_gene_mRNA_ids) == 0: print("This plot is intended to be run on simulations where the" " new gene option was enabled, but no new gene mRNAs were " diff --git a/models/ecoli/analysis/variant/__init__.py b/models/ecoli/analysis/variant/__init__.py index 60f8907b6..253795cb3 100644 --- a/models/ecoli/analysis/variant/__init__.py +++ b/models/ecoli/analysis/variant/__init__.py @@ -121,4 +121,9 @@ 'TIMELINES': [ 'growth_trajectory', ], + 'NEW_GENE': [ + 'new_gene_counts.py', + 'new_gene_protein_mass_fraction_histogram.py', + 'new_gene_translation_efficiency_heatmaps.py', + ], } diff --git a/models/ecoli/listeners/fba_results.py b/models/ecoli/listeners/fba_results.py index 5a73e9119..086bdb611 100644 --- a/models/ecoli/listeners/fba_results.py +++ b/models/ecoli/listeners/fba_results.py @@ -72,6 +72,15 @@ def initialize(self, sim, sim_data): (v, (base_rxn_indexes, fba_rxn_indexes)), shape=shape) + # Add fluxes for the external metabolic pathway reactions, if available + if sim_data.process.metabolism_external_pathway.has_external_pathway: + self.metabolism_external_pathway = sim.processes["MetabolismExternalPathway"] + self.n_reactions_external = len(sim_data.process.metabolism_external_pathway.rxn_ids) + self.reactionIDs_external = sim_data.process.metabolism_external_pathway.rxn_ids + else: + self.n_reactions_external = 0 + self.reactionIDs_external = [] + # Allocate memory def allocate(self): super(FBAResults, self).allocate() @@ -95,6 +104,9 @@ def allocate(self): self.constrained_molecules = [False] * len(self.all_external_exchange_molecules) self.uptake_constraints = [np.nan] * len(self.all_external_exchange_molecules) + # Args for external pathway + self.externalPathwayFluxes = [np.nan] * self.n_reactions_external + def update(self): # Compile reaction fluxes to those of base reactions self.base_reaction_fluxes = self.reaction_mapping_matrix.dot( @@ -115,6 +127,7 @@ def tableCreate(self, tableWriter): 'importExchange': 'all_external_exchange_molecules', 'conc_updates': 'conc_update_molecules', 'catalyst_counts': 'catalyst_ids', + 'externalPathwayFluxes': 'externalPathwayReactions', } tableWriter.writeAttributes( @@ -128,6 +141,7 @@ def tableCreate(self, tableWriter): all_external_exchange_molecules=self.all_external_exchange_molecules, conc_update_molecules=self.conc_update_molecules, catalyst_ids=self.metabolism.catalyst_ids, + externalPathwayReactions=self.reactionIDs_external, subcolumns=subcolumns, ) @@ -154,4 +168,5 @@ def tableAppend(self, tableWriter): unconstrained_molecules=self.unconstrained_molecules, constrained_molecules=self.constrained_molecules, uptake_constraints=self.uptake_constraints, + externalPathwayFluxes=self.externalPathwayFluxes ) diff --git a/models/ecoli/processes/external_pathway.py b/models/ecoli/processes/metabolism_external_pathway.py similarity index 69% rename from models/ecoli/processes/external_pathway.py rename to models/ecoli/processes/metabolism_external_pathway.py index 8ffd38348..821cddc8c 100644 --- a/models/ecoli/processes/external_pathway.py +++ b/models/ecoli/processes/metabolism_external_pathway.py @@ -1,7 +1,7 @@ """ Metabolism sub-model for new(external) pathway. This is a separate model to E.coli's metabolism and it is only run if the user has added an external -pathway to E. coli's metabolim. +pathway to E. coli's metabolism. The corresponding reactions of this model are catalysed by the enzymes produced by the exogenous genes that we are adding. The reactions are defined in /wcEcoli/reconstruction/ecoli/flat/new_gene_data. @@ -11,6 +11,15 @@ from wholecell.utils import units from wholecell.utils.constants import REQUEST_PRIORITY_METABOLISM +TIME_UNITS = units.s +COUNTS_UNITS = units.mmol +MASS_UNITS = units.g +TIME_UNITS = units.s +VOLUME_UNITS = units.L +CONC_UNITS = COUNTS_UNITS / VOLUME_UNITS +CONVERSION_UNITS = MASS_UNITS * TIME_UNITS / VOLUME_UNITS +GDCW_BASIS = units.mmol / units.g / units.h +MODEL_FLUX_UNITS = COUNTS_UNITS / VOLUME_UNITS / TIME_UNITS class MetabolismExternalPathway(wholecell.processes.process.Process): """ Metabolism External Pathway """ @@ -31,10 +40,10 @@ def initialize(self, sim, sim_data): self.n_avogadro = sim_data.constants.n_avogadro.asNumber(1 / units.mmol) self.cell_density = sim_data.constants.cell_density.asNumber(units.g / units.L) + self.external_pathway_exists = sim_data.process.metabolism_external_pathway.has_external_pathway + # check if there is a new metabolic pathway to be added - if sim_data.process.metabolism_external_pathway.has_external_pathway==True: - print('There is an external metabolic pathway to be added') - self.external_pathway_exists = True + if self.external_pathway_exists: # Create method self.molecules_to_next_time_step = sim_data.process.metabolism_external_pathway.molecules_to_next_time_step @@ -42,15 +51,12 @@ def initialize(self, sim, sim_data): self.molecule_names = sim_data.process.metabolism_external_pathway.molecule_names self.molecules = self.bulkMoleculesView(self.molecule_names) - self.enzyme_names = [item for sublist in sim_data.process.metabolism_external_pathway.enzymes.values() for - item in sublist] - self.clean_enzyme = sorted([*set(list(filter(lambda item: item is not None, self.enzyme_names)))]) + enzyme_names = sum(sim_data.process.metabolism_external_pathway.enzymes.values(), []) + self.clean_enzyme = sorted([*set(list(filter(lambda item: item is not None, enzyme_names)))]) self.enzymes = self.bulkMoleculesView(self.clean_enzyme) self.bulkMoleculesRequestPriorityIs(REQUEST_PRIORITY_METABOLISM) - else: - self.external_pathway_exists = False - print('External pathway not included') + def calculateRequest(self): if self.external_pathway_exists: @@ -61,20 +67,19 @@ def calculateRequest(self): self.enzymes_dict = dict(zip(self.clean_enzyme, enzyme_counts)) # Get cell mass and volume - dry_mass = (self.readFromListener("Mass", "dryMass") * units.fg).asNumber(units.g) - cell_mass = (self.readFromListener("Mass", "cellMass") * units.fg).asNumber(units.g) - self.cell_volume = cell_mass / self.cell_density - self.dcw_to_volume = self.cell_density * (dry_mass / cell_mass) - + self.dry_mass = (self.readFromListener("Mass", "dryMass") * units.fg).asNumber(units.g) + self.cell_mass = (self.readFromListener("Mass", "cellMass") * units.fg).asNumber(units.g) + self.cell_volume = self.cell_mass / self.cell_density + self.dcw_to_volume = self.cell_density * (self.dry_mass / self.cell_mass) self.molecules_required, self.all_molecule_changes, self.flux = self.molecules_to_next_time_step( self.molecule_dict, self.enzymes_dict, - self.cell_volume, self.n_avogadro, 10000, - method="LSODA", jit=self.jit) + self.cell_volume, self.n_avogadro, self.timeStepSec(), method="LSODA") # Request counts of molecules needed self.molecules.requestIs(self.molecules_required) def evolveState(self): if self.external_pathway_exists: + self.writeToListener('FBAResults', 'externalPathwayFluxes', self.flux) # Increment changes in molecule counts self.molecules.countsInc(self.all_molecule_changes) diff --git a/models/ecoli/sim/simulation.py b/models/ecoli/sim/simulation.py index df1419291..67a164815 100755 --- a/models/ecoli/sim/simulation.py +++ b/models/ecoli/sim/simulation.py @@ -45,7 +45,7 @@ from models.ecoli.sim.initial_conditions import calcInitialConditions from wholecell.sim.divide_cell import divide_cell from models.ecoli.sim.initial_conditions import setDaughterInitialConditions -from models.ecoli.processes.external_pathway import MetabolismExternalPathway +from models.ecoli.processes.metabolism_external_pathway import MetabolismExternalPathway class EcoliSimulation(Simulation): diff --git a/reconstruction/ecoli/dataclasses/process/external_pathway.py b/reconstruction/ecoli/dataclasses/process/metabolism_external_pathway.py similarity index 76% rename from reconstruction/ecoli/dataclasses/process/external_pathway.py rename to reconstruction/ecoli/dataclasses/process/metabolism_external_pathway.py index 27d5f6321..45bb1d3e8 100644 --- a/reconstruction/ecoli/dataclasses/process/external_pathway.py +++ b/reconstruction/ecoli/dataclasses/process/metabolism_external_pathway.py @@ -6,25 +6,14 @@ import sympy as sp from wholecell.utils import data -#TO DO: reactions catalyzed by several enzymes. +#TODO: reactions catalyzed by several enzymes; reactions that have several substrates; spontaenous reactions have to be handled differently # Alternative methods to try (in order of priority) when solving ODEs to the next time step -IVP_METHODS = ['LSODA', 'BDF'] -COUNTS_UNITS = units.mmol -VOLUME_UNITS = units.L -TIME_UNITS = units.s -MODEL_FLUX_UNITS = COUNTS_UNITS / VOLUME_UNITS / TIME_UNITS -DCW_FLUX_UNITS = units.mmol / units.g / units.h +IVP_METHODS = ['LSODA'] class MetabolismExternalPathway(object): def __init__(self, raw_data, sim_data): - - if hasattr(raw_data, 'new_gene_data') and hasattr(getattr(raw_data.new_gene_data, dir(raw_data.new_gene_data)[-1]), 'metabolic_reactions_new'): - has_external_pathway = True - else: - has_external_pathway = False - - if has_external_pathway==True: + if raw_data.new_genes_option != "off": # Build the abstractions needed for the metabolism corresponding to the external pathway molecules = [] # list of all molecules involved in the pathway kcats = [] @@ -41,8 +30,8 @@ def __init__(self, raw_data, sim_data): independentMolecules = [] # list of all specific independent molecule names independent_molecule_indexes = [] # index of each of the independent molecules - new_genes_folder = getattr(raw_data.new_gene_data, dir(raw_data.new_gene_data)[-1]) - for reactionIndex, reaction in enumerate(new_genes_folder.metabolic_reactions_new): + new_genes_folder = getattr(raw_data.new_gene_data, raw_data.new_genes_option) + for reactionIndex, reaction in enumerate(new_genes_folder.metabolic_reactions_external): reactionName = reaction["id"] if reactionName not in rxnIds: rxnIds.append(reactionName) @@ -52,8 +41,6 @@ def __init__(self, raw_data, sim_data): enzymes[reactionName] = reaction["catalyzed_by"] - reactionIndex = len(rxnIds) - 1 - #Build stoichiometry matrix for mol_id, coeff in reaction["stoichiometry"].items(): mol_id_with_compartment = mol_id @@ -69,44 +56,43 @@ def __init__(self, raw_data, sim_data): stoichMatrixI.append(molecule_index) stoichMatrixJ.append(reactionIndex) stoichMatrixV.append(coeff) - molecule = mol_id.split("[")[0] - - # Build matrix with linearly independent rows based on network orientation - if str(molecule) in ["HK", "RR", "ATP"] and molecule not in independentMolecules: - independentMolecules.append(molecule) - independent_molecule_indexes.append(molecule_index) # Find molecular mass of the molecule and add to mass matrix - molecularMass = sim_data.getter.get_mass(mol_id_with_compartment.split('[')[0]).asNumber(units.g / units.mol) + molecularMass = sim_data.getter.get_mass(mol_id_with_compartment[:-3]).asNumber(units.g / units.mol) stoichMatrixMass.append(molecularMass) - self.molecule_names = np.array(molecules, dtype='U') - self.rxn_ids = rxnIds - self.flux = np.array(np.zeros(len(rxnIds))) - self.enzymes = enzymes - self.kcats = np.array(kcats) - self.kms = np.array(kms) - self.substrates = np.array(substrates) - - self.independent_molecules = np.array(independentMolecules, dtype='U') - self.independent_molecule_indexes = np.array(independent_molecule_indexes) - self._stoichMatrixI = np.array(stoichMatrixI) - self._stoichMatrixJ = np.array(stoichMatrixJ) - self._stoichMatrixV = np.array(stoichMatrixV) - - self._stoich_matrix_mass = np.array(stoichMatrixMass) - self.balance_matrix = self.stoich_matrix() * self.mass_matrix() - - # Find the mass balance of each equation in the balanceMatrix - massBalanceArray = self.mass_balance() - - # The stoichometric matrix should balance out to numerical zero. This gives an error with smaller number. - assert np.max(np.absolute(massBalanceArray)) < 1e-9 - - # Build matrices - self._populate_derivative_and_jacobian() - self.has_external_pathway = has_external_pathway + self.molecule_names = np.array(molecules, dtype='U') + self.rxn_ids = rxnIds + self.flux = np.array(np.zeros(len(rxnIds))) + self.enzymes = enzymes + self.kcats = np.array(kcats) + self.kms = np.array(kms) + self.substrates = np.array(substrates) + + self.independent_molecules = np.array(independentMolecules, dtype='U') + self.independent_molecule_indexes = np.array(independent_molecule_indexes) + self._stoichMatrixI = np.array(stoichMatrixI) + self._stoichMatrixJ = np.array(stoichMatrixJ) + self._stoichMatrixV = np.array(stoichMatrixV) + self._stoich_matrix_mass = np.array(stoichMatrixMass) + self.balance_matrix = self.stoich_matrix() * self.mass_matrix() + + # Find the mass balance of each equation in the balanceMatrix + massBalanceArray = self.mass_balance() + + # The stoichometric matrix should balance out to numerical zero. This gives an error with smaller number. + assert np.max(np.absolute(massBalanceArray)) < 1e-9 + + # Build matrices + self._populate_derivative_and_jacobian() + + if rxnIds==[]: + self.has_external_pathway = False + else: + self.has_external_pathway = True + else: + self.has_external_pathway = False def __getstate__(self): """Return the state to pickle, omitting derived attributes that @@ -192,7 +178,7 @@ def _make_derivative(self): def molecules_to_next_time_step(self, moleculeDict, enzymeDict, cellVolume, - nAvogadro, timeStepSec, method="LSODA", jit=True): + nAvogadro, timeStepSec, method="LSODA"): """ Calculates the changes in the counts of molecules in the next timestep @@ -218,18 +204,23 @@ def molecules_to_next_time_step(self, moleculeDict, enzymeDict, cellVolume, """ subCounts, subNames, enzymeCounts, enzymeNames = [], [], [], [] + # get the counts of the substrates. + # we assume that each reaction has only one substrate for sub in self.substrates: subCounts.append(moleculeDict[sub[0]]) subNames.append(sub[0]) + # get the counts of the enzymes + # we assume that each reaction has only one enzyme for reaction in self.rxn_ids: # if the reaction has an enzyme if self.enzymes[reaction]: enzymeCounts.append(enzymeDict[self.enzymes[reaction][0]]) enzymeNames.append(self.enzymes[reaction][0]) - #this might need to be modelled differently + #If the reaction is spontaneous, we set the enzyme counts to a high value to avoid creaitng a bottleneck. + #This might need to be modelled differently else: - enzymeCounts.append(1) + enzymeCounts.append(100000) enzymeNames.append('None') diff --git a/reconstruction/ecoli/dataclasses/process/process.py b/reconstruction/ecoli/dataclasses/process/process.py index bcd0b3203..90e908f02 100755 --- a/reconstruction/ecoli/dataclasses/process/process.py +++ b/reconstruction/ecoli/dataclasses/process/process.py @@ -12,7 +12,7 @@ from .transcription_regulation import TranscriptionRegulation from .translation import Translation from .two_component_system import TwoComponentSystem -from .external_pathway import MetabolismExternalPathway +from .metabolism_external_pathway import MetabolismExternalPathway class Process(object): diff --git a/reconstruction/ecoli/flat/new_gene_data/gfp/metabolic_reactions_external.tsv b/reconstruction/ecoli/flat/new_gene_data/gfp/metabolic_reactions_external.tsv new file mode 100644 index 000000000..66b4676c9 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/gfp/metabolic_reactions_external.tsv @@ -0,0 +1 @@ +"id" "stoichiometry" "direction" "catalyzed_by" "substrate" "kcat" "km" diff --git a/reconstruction/ecoli/flat/new_gene_data/gfp/metabolites.tsv b/reconstruction/ecoli/flat/new_gene_data/gfp/metabolites.tsv new file mode 100644 index 000000000..259b1445b --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/gfp/metabolites.tsv @@ -0,0 +1 @@ +"id" "common_name" "synonyms" "chemical_formula" "mw" "molecular_charge" "_smiles" diff --git a/reconstruction/ecoli/flat/new_gene_data/gfp/protein_half_lives_measured.tsv b/reconstruction/ecoli/flat/new_gene_data/gfp/protein_half_lives_measured.tsv new file mode 100644 index 000000000..19efd4227 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/gfp/protein_half_lives_measured.tsv @@ -0,0 +1 @@ +"id" "half life (units.min)" "_comments" diff --git a/reconstruction/ecoli/flat/new_gene_data/gfp/rna_half_lives.tsv b/reconstruction/ecoli/flat/new_gene_data/gfp/rna_half_lives.tsv new file mode 100644 index 000000000..b63b12ddd --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/gfp/rna_half_lives.tsv @@ -0,0 +1 @@ +"id" "half_life (units.min)" diff --git a/reconstruction/ecoli/flat/new_gene_data/template/metabolic_reactions_external.tsv b/reconstruction/ecoli/flat/new_gene_data/template/metabolic_reactions_external.tsv new file mode 100644 index 000000000..66b4676c9 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/template/metabolic_reactions_external.tsv @@ -0,0 +1 @@ +"id" "stoichiometry" "direction" "catalyzed_by" "substrate" "kcat" "km" diff --git a/reconstruction/ecoli/flat/new_gene_data/template/metabolites.tsv b/reconstruction/ecoli/flat/new_gene_data/template/metabolites.tsv new file mode 100644 index 000000000..259b1445b --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/template/metabolites.tsv @@ -0,0 +1 @@ +"id" "common_name" "synonyms" "chemical_formula" "mw" "molecular_charge" "_smiles" diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE/metabolic_reactions_external.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE/metabolic_reactions_external.tsv new file mode 100644 index 000000000..66b4676c9 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE/metabolic_reactions_external.tsv @@ -0,0 +1 @@ +"id" "stoichiometry" "direction" "catalyzed_by" "substrate" "kcat" "km" diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE/metabolites.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE/metabolites.tsv new file mode 100644 index 000000000..28b416b37 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE/metabolites.tsv @@ -0,0 +1,2 @@ +"id" "common_name" "synonyms" "chemical_formula" "mw" "molecular_charge" "_smiles" + diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE/protein_half_lives_measured.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE/protein_half_lives_measured.tsv new file mode 100644 index 000000000..19efd4227 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE/protein_half_lives_measured.tsv @@ -0,0 +1 @@ +"id" "half life (units.min)" "_comments" diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE/rna_half_lives.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE/rna_half_lives.tsv new file mode 100644 index 000000000..b63b12ddd --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE/rna_half_lives.tsv @@ -0,0 +1 @@ +"id" "half_life (units.min)" diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolic_reactions_new.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolic_reactions_external.tsv similarity index 57% rename from reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolic_reactions_new.tsv rename to reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolic_reactions_external.tsv index 480cd4379..b5ea9f176 100644 --- a/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolic_reactions_new.tsv +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolic_reactions_external.tsv @@ -1,7 +1,7 @@ "id" "stoichiometry" "direction" "catalyzed_by" "substrate" "kcat" "km" -"rxnvio1" {"TRP[c]": -1, "OXYGEN-MOLECULE[c]": -1, "CPD-11890[c]": 1, "HYDROGEN-PEROXIDE[c]": 1, "PROTON[c]": 1} "L2R" ["NG-VioA-MONOMER[c]"] ["TRP[c]"] 3.38 31 -"rxnvio2" {"CPD-11890[c]": -2, "HYDROGEN-PEROXIDE[c]": -1, "CPD-19471[c]": 1, "WATER[c]": 2} "L2R" ["NG-VioB-MONOMER[c]"] ["CPD-11890[c]"] 0.21 20 -"rxnvio3" {"CPD-19471[c]": -1, "PROTON[c]": -2, "CPD-14320[c]": 1, "AMMONIUM[c]": 1, "CARBON-DIOXIDE[c]": 1} "L2R" ["NG-VioE-MONOMER[c]"] ["CPD-19471[c]"] 0.116 7 -"rxnvio4" {"CPD-14320[c]": -1, "NADH[c]": -1, "PROTON[c]": -1, "OXYGEN-MOLECULE[c]": -1, "CPD-14319[c]": 1, "NAD[c]": 1, "WATER[c]": 1} "L2R" ["NG-VioD-MONOMER[c]"] ["CPD-14320[c]"] 0.035 5 -"rxnvio5" {"CPD-14319[c]": -1, "NADH[c]": -1, "OXYGEN-MOLECULE[c]": -1, "PROTON[c]": -1, "CPD-14324[c]": 1, "NAD[c]": 1, "WATER[c]": 1} "L2R" ["NG-VioC-MONOMER[c]"] ["CPD-14319[c]"] 0.013 5 -"rxnvio6" {"CPD-14324[c]": -1, "OXYGEN-MOLECULE[c]": -1, "PROTON[c]": -1, "VIOLACEIN[c]": 1, "CARBON-DIOXIDE[c]": 1, "WATER[c]": 1} "L2R" [] ["CPD-14324[c]"] 1 1 +"rxnvio1" {"TRP[c]": -1, "OXYGEN-MOLECULE[c]": -1, "CPD-11890[c]": 1, "HYDROGEN-PEROXIDE[c]": 1, "PROTON[c]": 1} "L2R" ["NG-VioA-MONOMER[c]"] ["TRP[c]"] 3.38 0.031 +"rxnvio2" {"CPD-11890[c]": -2, "HYDROGEN-PEROXIDE[c]": -1, "CPD-19471[c]": 1, "WATER[c]": 2} "L2R" ["NG-VioB-MONOMER[c]"] ["CPD-11890[c]"] 0.21 0.02 +"rxnvio3" {"CPD-19471[c]": -1, "PROTON[c]": -2, "CPD-14320[c]": 1, "AMMONIUM[c]": 1, "CARBON-DIOXIDE[c]": 1} "L2R" ["NG-VioE-MONOMER[c]"] ["CPD-19471[c]"] 0.116 0.007 +"rxnvio4" {"CPD-14320[c]": -1, "NADH[c]": -1, "PROTON[c]": -1, "OXYGEN-MOLECULE[c]": -1, "CPD-14319[c]": 1, "NAD[c]": 1, "WATER[c]": 1} "L2R" ["NG-VioD-MONOMER[c]"] ["CPD-14320[c]"] 0.035 0.001 +"rxnvio5" {"CPD-14320[c]": -1, "NADH[c]": -1, "PROTON[c]": -1, "OXYGEN-MOLECULE[c]": -1, "CPD-14323[c]": 1, "NAD[c]": 1, "WATER[c]": 1} "L2R" ["NG-VioC-MONOMER[c]"] ["CPD-14320[c]"] 0.013 0.001 +"rxnvio6" {"CPD-14319[c]": -1, "NADH[c]": -1, "OXYGEN-MOLECULE[c]": -1, "PROTON[c]": -1, "CPD-14324[c]": 1, "NAD[c]": 1, "WATER[c]": 1} "L2R" ["NG-VioC-MONOMER[c]"] ["CPD-14319[c]"] 0.013 0.001 diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolites.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolites.tsv index 0da225c2b..8491cf49f 100644 --- a/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolites.tsv +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolites.tsv @@ -5,7 +5,7 @@ "CPD-14324" "VIOLACEINATE" [] "C21H14N3O4" 372.361 -1 "VIOLACEIN" "VIOLACEIN" [] "C20H13N3O3" 343.343 0 "CPD-19471" "N-[2-(carboxylatoamino)-1,2-bis(1H-indol-3-yl)ethyl]carbamate" [] "C22H16N4O4" 400.393 -2 -"CPD-14323" "DEOXYVIOLACEINATE" [] "C21H14N3O3" 356.363 -1 +"CPD-14323" "DEOXYVIOLACEINATE" [] "C21H14N3O3" 356.361 -1 "CPD-14318" "DEOXYVIOLACEIN" [] "C20H13N3O2" 327.345 0 "CPD-14321" "PROVIOLACEIN" [] "C20H13N3O2" 327.345 0 "CPD-14322" "PRODEOXYVIOLACEIN" [] "C20H13N3O" 311.345 0 diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/protein_half_lives_measured.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/protein_half_lives_measured.tsv new file mode 100644 index 000000000..19efd4227 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/protein_half_lives_measured.tsv @@ -0,0 +1 @@ +"id" "half life (units.min)" "_comments" diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/rna_half_lives.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/rna_half_lives.tsv new file mode 100644 index 000000000..b63b12ddd --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/rna_half_lives.tsv @@ -0,0 +1 @@ +"id" "half_life (units.min)" diff --git a/reconstruction/ecoli/knowledge_base_raw.py b/reconstruction/ecoli/knowledge_base_raw.py index 85d9ee046..f0c1de66d 100644 --- a/reconstruction/ecoli/knowledge_base_raw.py +++ b/reconstruction/ecoli/knowledge_base_raw.py @@ -226,41 +226,51 @@ def __init__(self, operons_on: bool, remove_rrna_operons: bool, remove_rrff: boo }) if self.new_genes_option != 'off': - new_gene_subdir = new_genes_option - new_gene_path = os.path.join('new_gene_data',new_gene_subdir) - assert os.path.isdir(os.path.join(FLAT_DIR,new_gene_path)), \ - "This new_genes_data subdirectory is invalid." + new_gene_path = os.path.join('new_gene_data', new_gene_subdir) + assert os.path.isdir(os.path.join(FLAT_DIR, new_gene_path)), ( + "This new_genes_data subdirectory is invalid.") nested_attr = 'new_gene_data.' + new_gene_subdir + "." # These files do not need to be joined to existing files - self.list_of_dict_filenames.append(os.path.join(new_gene_path, 'insertion_location.tsv')) - self.list_of_dict_filenames.append(os.path.join(new_gene_path, 'gene_sequences.tsv')) + self.list_of_dict_filenames.append( + os.path.join(new_gene_path, 'insertion_location.tsv')) + self.list_of_dict_filenames.append( + os.path.join(new_gene_path, 'gene_sequences.tsv')) + self.list_of_dict_filenames.append( + os.path.join(new_gene_path, 'metabolic_reactions_external.tsv')) # These files need to be joined to existing files - new_gene_shared_files = ['genes', 'rnas', 'proteins', - 'rna_half_lives', - 'protein_half_lives_measured'] - - if os.path.isfile(os.path.join(FLAT_DIR+'/'+new_gene_path, 'metabolic_reactions_new.tsv')): - self.list_of_dict_filenames.append(os.path.join(new_gene_path, 'metabolic_reactions_new.tsv')) - new_gene_shared_files.append('metabolites') + new_gene_shared_files = [ + 'genes', + 'rnas', + 'proteins', + 'rna_half_lives', + 'protein_half_lives_measured', + 'metabolites' + ] for f in new_gene_shared_files: file_path = os.path.join(new_gene_path, f + '.tsv') - """ - if these files dont exist, fill in with default values at a - later point - """ - if os.path.isfile(os.path.join(FLAT_DIR, file_path)): - self.list_of_dict_filenames.append(file_path) - self.new_gene_added_data.update({f: nested_attr + f}) + # If these files are empty, fill in with default values at a + # later point + assert os.path.isfile(os.path.join(FLAT_DIR, file_path)), ( + f"File {f}.tsv must be present in the new_genes_data" + f" subdirectory {new_gene_subdir}.") + self.list_of_dict_filenames.append(file_path) + self.new_gene_added_data.update({f: nested_attr + f}) + + + # RNA sequence data aso needs to be joined to an existing file, + # nested under the rna_seq_data rnaseq_path = os.path.join(new_gene_path, 'rnaseq_rsem_tpm_mean.tsv') - if os.path.isfile(os.path.join(FLAT_DIR,rnaseq_path)): - self.list_of_dict_filenames.append(rnaseq_path) - self.new_gene_added_data.update({'rna_seq_data.rnaseq_rsem_tpm_mean': - nested_attr + 'rnaseq_rsem_tpm_mean'}) + assert os.path.isfile(os.path.join(FLAT_DIR,rnaseq_path)), ( + f"File rnaseq_rsem_tpm_mean.tsv must be present in the" + f" new_genes_data subdirectory {new_gene_subdir}.") + self.list_of_dict_filenames.append(rnaseq_path) + self.new_gene_added_data.update({ + 'rna_seq_data.rnaseq_rsem_tpm_mean': nested_attr + 'rnaseq_rsem_tpm_mean'}) # Load raw data from TSV files for filename in self.list_of_dict_filenames: @@ -269,7 +279,8 @@ def __init__(self, operons_on: bool, remove_rrna_operons: bool, remove_rrff: boo for filename in self.list_of_parameter_filenames: self._load_parameters(FLAT_DIR, os.path.join(FLAT_DIR, filename)) - self.genome_sequence = self._load_sequence(os.path.join(FLAT_DIR, SEQUENCE_FILE)) + self.genome_sequence = self._load_sequence( + os.path.join(FLAT_DIR, SEQUENCE_FILE)) self._prune_data() @@ -284,14 +295,11 @@ def __init__(self, operons_on: bool, remove_rrna_operons: bool, remove_rrff: boo insertion_sequence = self._get_new_gene_sequence(nested_attr) insert_end = self._update_gene_locations(nested_attr, insert_pos) - self.new_gene_added_data.update({'genes': - nested_attr+'genes'}) + self.new_gene_added_data.update({'genes': nested_attr+'genes'}) - self.genome_sequence = self.genome_sequence[:insert_pos] + \ - insertion_sequence + \ - self.genome_sequence[insert_pos:] - assert self.genome_sequence[insert_pos:(insert_end + 1)] == \ - insertion_sequence + self.genome_sequence = (self.genome_sequence[:insert_pos] + + insertion_sequence + self.genome_sequence[insert_pos:]) + assert self.genome_sequence[insert_pos:(insert_end + 1)] == insertion_sequence self.added_data = self.new_gene_added_data self._join_data() @@ -345,7 +353,6 @@ def _prune_data(self): if all data in a row in the file specifying rows to be removed matches the same columns in the raw data file. """ - # Check each pair of files to be removed for data_attr, attr_to_remove in self.removed_data.items(): # Build the set of data to identify rows to be removed @@ -381,7 +388,6 @@ def _join_data(self): Add rows that are specified in additional files. Data will only be added if all the loaded columns from both datasets match. """ - # Join data for each file with data to be added for data_attr, attr_to_add in self.added_data.items(): # Get datasets to join @@ -393,11 +399,13 @@ def _join_data(self): for attr in attr_to_add.split('.')[1:]: added_data = getattr(added_data, attr) - # Check columns are the same for each dataset - col_diff = set(data[0].keys()).symmetric_difference(added_data[0].keys()) - if col_diff: - raise ValueError(f'Could not join datasets {data_attr} and {attr_to_add} ' - f'because columns do not match (different columns: {col_diff}).') + if added_data: # Some new gene additional files may be empty + # Check columns are the same for each dataset + col_diff = set(data[0].keys()).symmetric_difference(added_data[0].keys()) + if col_diff: + raise ValueError(f'Could not join datasets {data_attr} and {attr_to_add} ' + f'because columns do not match (different columns: {col_diff}).') + # Join datasets for row in added_data: data.append(row) @@ -472,22 +480,20 @@ def _check_new_gene_ids(self, nested_attr): new_protein_data = getattr(nested_data,'proteins') for row in new_genes_data: - assert row['id'].startswith("NG"), "ids of new genes must start " \ - "with NG" + assert row['id'].startswith("NG"), ( + "ids of new genes must start with NG") for row in new_RNA_data: - assert row['id'].startswith("NG"), "ids of new gene rnas must " \ - "start with NG" + assert row['id'].startswith("NG"), ( + "ids of new gene RNAs must start with NG") for row in new_protein_data: - assert row['id'].startswith("NG"), "ids of new gene proteins " \ - "must start with NG" + assert row['id'].startswith("NG"), ( + "ids of new gene proteins must start with NG") return - def _update_gene_insertion_location(self, nested_attr): """ Update insertion location of new genes to prevent conflicts. """ - genes_data = getattr(self, 'genes') tu_data = getattr(self, 'transcription_units') dna_sites_data = getattr(self, 'dna_sites') @@ -498,8 +504,8 @@ def _update_gene_insertion_location(self, nested_attr): insert_loc_data = getattr(nested_data, 'insertion_location') - assert len(insert_loc_data) == 1, 'each noncontiguous insertion should' \ - ' be in its own directory' + assert len(insert_loc_data) == 1, ( + 'each noncontiguous insertion should be in its own directory') insert_pos = insert_loc_data[0]['insertion_pos'] if not tu_data: @@ -516,17 +522,15 @@ def _update_gene_insertion_location(self, nested_attr): site['common_name'] == 'TerC'] data_to_check += sites_data_to_check - conflicts = [row for row in data_to_check if - ((row['left_end_pos'] is not None) and - (row['left_end_pos'] != '')) and - ((row['right_end_pos'] is not None) and - (row['left_end_pos'] != '')) and - (row['left_end_pos'] < insert_pos) and - (row['right_end_pos'] >= insert_pos)] + conflicts = [ + row for row in data_to_check + if ((row['left_end_pos'] is not None) and (row['left_end_pos'] != '')) + and ((row['right_end_pos'] is not None) and (row['left_end_pos'] != '')) + and (row['left_end_pos'] < insert_pos) + and (row['right_end_pos'] >= insert_pos)] # Change insertion location to after conflicts if conflicts: - shift = max([ sub['right_end_pos'] for sub in conflicts ]) - \ - insert_pos + 1 + shift = max([sub['right_end_pos'] for sub in conflicts]) - insert_pos + 1 insert_pos = insert_pos + shift return insert_pos @@ -542,12 +546,12 @@ def _update_global_coordinates(self, data, insert_pos, insert_len): insert_len: Length of new gene insertion """ - for row in data: left = row['left_end_pos'] right = row['right_end_pos'] - if (left is not None and left != '') and ( - right is not None and right != '') and left >= insert_pos: + if ((left is not None and left != '') + and (right is not None and right != '') + and left >= insert_pos): row.update({'left_end_pos': left + insert_len}) row.update({'right_end_pos': right + insert_len}) @@ -556,7 +560,6 @@ def _update_gene_locations(self, nested_attr, insert_pos): Modify positions of original genes based upon the insertion location of new genes. Returns end position of the gene insertion. """ - genes_data = getattr(self, 'genes') tu_data = getattr(self, 'transcription_units') dna_sites_data = getattr(self, 'dna_sites') @@ -569,9 +572,9 @@ def _update_gene_locations(self, nested_attr, insert_pos): new_genes_data = sorted(new_genes_data, key=lambda d: d['left_end_pos']) for i in range(len(new_genes_data) - 1): - assert new_genes_data[i+1]['left_end_pos'] == new_genes_data[i][ - 'right_end_pos'] + 1, \ - "gaps in new gene insertions are not supported at this time" + assert (new_genes_data[i+1]['left_end_pos'] + == new_genes_data[i]['right_end_pos'] + 1), ( + "gaps in new gene insertions are not supported at this time") insert_end = new_genes_data[-1]['right_end_pos'] + insert_pos insert_len = insert_end - insert_pos + 1 @@ -612,26 +615,26 @@ def _get_new_gene_sequence(self, nested_attr): insertion_seq = Seq.Seq('') new_genes_data = sorted(new_genes_data, key=lambda d: d['left_end_pos']) - assert new_genes_data[0]['left_end_pos'] == 0, \ - 'first gene in new sequence must start at relative coordinate 0' + assert new_genes_data[0]['left_end_pos'] == 0, ( + 'first gene in new sequence must start at relative coordinate 0') for gene in new_genes_data: if gene['direction'] == "+": - seq_row = next((row for row in seq_data - if row['id'] == gene['id']), None) + seq_row = next(( + row for row in seq_data if row['id'] == gene['id']), None) seq_string = seq_row['gene_seq'] seq_addition = Seq.Seq(seq_string) insertion_seq += seq_addition else: - seq_row = next((row for row in seq_data - if row['id'] == gene['id']), None) + seq_row = next(( + row for row in seq_data if row['id'] == gene['id']), None) seq_string = seq_row['gene_seq'] seq_addition = Seq.Seq(seq_string) insertion_seq += seq_addition.reverse_complement() - assert len(seq_addition) == (gene['right_end_pos'] - - gene['left_end_pos'] + 1),\ - "left and right end positions must agree with actual " \ - "sequence length for " + gene['id'] + assert (len(seq_addition) == ( + gene['right_end_pos'] - gene['left_end_pos'] + 1)), ( + f"left and right end positions must agree with actual " + f"sequence length for {gene['id']}") return insertion_seq diff --git a/runscripts/external_pathway/vioAE.sh b/runscripts/external_pathway/vioAE.sh new file mode 100755 index 000000000..f5109b74e --- /dev/null +++ b/runscripts/external_pathway/vioAE.sh @@ -0,0 +1,45 @@ +## To Run +# chmod u+x FireWorksBox_1.sh +# ./FireWorksBox_1.sh + +## Initialise the Database (is this really the only way to do this?) +cd /user/home/ig13470/wholecell3/wcm2024/wcEcoli/wholecell/fireworks/ +lpad -l my_launchpad.yaml reset + +## Pre Simulation Requirements +cd /user/home/ig13470/wholecell3/wcm2024/wcEcoli/ + +##Compile Cython code +make clean compile + +# Set the $PYTHONPATH: +export PYTHONPATH="/user/home/ig13470/wholecell3/wcm2024/wcEcoli/" + +## Create and Add FireWorks to the Launchpad +cd /user/home/ig13470/wholecell3/wcm2024/wcEcoli/wholecell/fireworks/ + +#DESC="new_gene_expression_pred_ks_338_031" PLOTS="NEW_GENE" \ +#VARIANT="new_gene_expression" FIRST_VARIANT_INDEX=4 LAST_VARIANT_INDEX=7 \ +#NEW_GENES="vioAE_meta" \ +#CACHED_SIM_DATA=0 PARALLEL_PARCA=1 \ +#SINGLE_DAUGHTERS=1 N_GENS=8 N_INIT_SIMS=1 \ +#LAUNCHPAD_FILE='/user/home/ig13470/wholecell3/wcm2024/wcEcoli/wholecell/fireworks/my_launchpad.yaml' \ +#python /user/home/ig13470/wholecell3/wcm2024/wcEcoli/runscripts/fireworks/fw_queue.py +# +#DESC="new_gene_expression_no_react" PLOTS="NEW_GENE" \ +#VARIANT="new_gene_expression" FIRST_VARIANT_INDEX=4 LAST_VARIANT_INDEX=7 \ +#NEW_GENES="vioAE" \ +#CACHED_SIM_DATA=0 PARALLEL_PARCA=1 \ +#SINGLE_DAUGHTERS=1 N_GENS=8 N_INIT_SIMS=1 \ +#LAUNCHPAD_FILE='/user/home/ig13470/wholecell3/wcm2024/wcEcoli/wholecell/fireworks/my_launchpad.yaml' \ +#python /user/home/ig13470/wholecell3/wcm2024/wcEcoli/runscripts/fireworks/fw_queue.py + +DESC="wildtype 3 seeds" \ +FIRST_VARIANT_INDEX=0 LAST_VARIANT_INDEX=0 \ +CACHED_SIM_DATA=0 PARALLEL_PARCA=1 \ +SINGLE_DAUGHTERS=1 N_GENS=8 N_INIT_SIMS=3 \ +LAUNCHPAD_FILE='/user/home/ig13470/wholecell3/wcm2024/wcEcoli/wholecell/fireworks/my_launchpad.yaml' \ +python /user/home/ig13470/wholecell3/wcm2024/wcEcoli/runscripts/fireworks/fw_queue.py + +## Launch Rockets to collect the FireWorks (created by fw_queue.py) from the Launchpad (MongoDB hosted on MLab via Heroku) and run them on the Queue (BlueCrystal) +nohup qlaunch -r -l my_launchpad.yaml -w my_fworker.yaml -q my_qadapter.yaml rapidfire --nlaunches infinite --sleep 30 --maxjobs_queue 100 From b6ae7fe1dbbba67db3c1caf4a55d889bc1169d1c Mon Sep 17 00:00:00 2001 From: ioanagherman Date: Wed, 20 Mar 2024 13:49:34 +0000 Subject: [PATCH 05/34] new gene internal shift adaptation --- .../processes/metabolism_external_pathway.py | 5 +++ .../sim/variants/new_gene_internal_shift.py | 5 +-- .../process/metabolism_external_pathway.py | 3 ++ reconstruction/ecoli/knowledge_base_raw.py | 17 +++++---- runscripts/external_pathway/vioAE.sh | 36 +++++++++---------- 5 files changed, 37 insertions(+), 29 deletions(-) diff --git a/models/ecoli/processes/metabolism_external_pathway.py b/models/ecoli/processes/metabolism_external_pathway.py index 821cddc8c..8f7166df2 100644 --- a/models/ecoli/processes/metabolism_external_pathway.py +++ b/models/ecoli/processes/metabolism_external_pathway.py @@ -71,6 +71,9 @@ def calculateRequest(self): self.cell_mass = (self.readFromListener("Mass", "cellMass") * units.fg).asNumber(units.g) self.cell_volume = self.cell_mass / self.cell_density self.dcw_to_volume = self.cell_density * (self.dry_mass / self.cell_mass) + + print('Molecules before ', self.molecule_dict) + print('Enzymes before ', self.enzymes_dict) self.molecules_required, self.all_molecule_changes, self.flux = self.molecules_to_next_time_step( self.molecule_dict, self.enzymes_dict, self.cell_volume, self.n_avogadro, self.timeStepSec(), method="LSODA") @@ -80,6 +83,8 @@ def calculateRequest(self): def evolveState(self): if self.external_pathway_exists: + print('Flux ', self.flux) + print('Molecules ', self.all_molecule_changes) self.writeToListener('FBAResults', 'externalPathwayFluxes', self.flux) # Increment changes in molecule counts self.molecules.countsInc(self.all_molecule_changes) diff --git a/models/ecoli/sim/variants/new_gene_internal_shift.py b/models/ecoli/sim/variants/new_gene_internal_shift.py index db5d064f9..058c5b3ba 100644 --- a/models/ecoli/sim/variants/new_gene_internal_shift.py +++ b/models/ecoli/sim/variants/new_gene_internal_shift.py @@ -71,8 +71,8 @@ # The variant index will be split into an index for each of these lists # which are written to simulation metadata for later use in analysis scripts -NEW_GENE_EXPRESSION_FACTORS = [0, 7, 8, 9, 10] -NEW_GENE_TRANSLATION_EFFICIENCY_VALUES = [10, 5, 1, 0.1, 0] +NEW_GENE_EXPRESSION_FACTORS = [0, 9, 10] +NEW_GENE_TRANSLATION_EFFICIENCY_VALUES = [1] SEPARATOR = len(NEW_GENE_TRANSLATION_EFFICIENCY_VALUES) assert NEW_GENE_EXPRESSION_FACTORS[0] == 0, ( @@ -171,6 +171,7 @@ def get_new_gene_expression_factor_and_translation_efficiency(sim_data, index): expression_factor = ( 10**(NEW_GENE_EXPRESSION_FACTORS[expression_list_index] - 1)) trl_eff_value = NEW_GENE_TRANSLATION_EFFICIENCY_VALUES[trl_eff_list_index] + print(expression_factor, trl_eff_value) return expression_factor, trl_eff_value diff --git a/reconstruction/ecoli/dataclasses/process/metabolism_external_pathway.py b/reconstruction/ecoli/dataclasses/process/metabolism_external_pathway.py index 45bb1d3e8..d55d61744 100644 --- a/reconstruction/ecoli/dataclasses/process/metabolism_external_pathway.py +++ b/reconstruction/ecoli/dataclasses/process/metabolism_external_pathway.py @@ -88,10 +88,13 @@ def __init__(self, raw_data, sim_data): self._populate_derivative_and_jacobian() if rxnIds==[]: + print('There are external genes, but no external pathway') self.has_external_pathway = False else: + print('There is an external pathway.') self.has_external_pathway = True else: + print('There is no external pathway and no external genes.') self.has_external_pathway = False def __getstate__(self): diff --git a/reconstruction/ecoli/knowledge_base_raw.py b/reconstruction/ecoli/knowledge_base_raw.py index 5ee43ea08..b28ef7b19 100644 --- a/reconstruction/ecoli/knowledge_base_raw.py +++ b/reconstruction/ecoli/knowledge_base_raw.py @@ -238,7 +238,6 @@ def __init__(self, operons_on: bool, remove_rrna_operons: bool, remove_rrff: boo os.path.join(new_gene_path, 'insertion_location.tsv')) self.list_of_dict_filenames.append( os.path.join(new_gene_path, 'gene_sequences.tsv')) - self.list_of_dict_filenames.append( os.path.join(new_gene_path, 'metabolic_reactions_external.tsv')) @@ -264,15 +263,15 @@ def __init__(self, operons_on: bool, remove_rrna_operons: bool, remove_rrff: boo self.new_gene_added_data.update({f: nested_attr + f}) - # RNA sequence data aso needs to be joined to an existing file, + # RNA sequence data also needs to be joined to an existing file, # nested under the rna_seq_data - rnaseq_path = os.path.join(new_gene_path, 'rnaseq_rsem_tpm_mean.tsv') - assert os.path.isfile(os.path.join(FLAT_DIR,rnaseq_path)), ( - f"File rnaseq_rsem_tpm_mean.tsv must be present in the" - f" new_genes_data subdirectory {new_gene_subdir}.") - self.list_of_dict_filenames.append(rnaseq_path) - self.new_gene_added_data.update({ - 'rna_seq_data.rnaseq_rsem_tpm_mean': nested_attr + 'rnaseq_rsem_tpm_mean'}) + #rnaseq_path = os.path.join(new_gene_path, 'rnaseq_rsem_tpm_mean.tsv') + #assert os.path.isfile(os.path.join(FLAT_DIR,rnaseq_path)), ( + # f"File rnaseq_rsem_tpm_mean.tsv must be present in the" + # f" new_genes_data subdirectory {new_gene_subdir}.") + #self.list_of_dict_filenames.append(rnaseq_path) + #self.new_gene_added_data.update({ + # 'rna_seq_data.rnaseq_rsem_tpm_mean': nested_attr + 'rnaseq_rsem_tpm_mean'}) # Load raw data from TSV files for filename in self.list_of_dict_filenames: diff --git a/runscripts/external_pathway/vioAE.sh b/runscripts/external_pathway/vioAE.sh index f5109b74e..bd306a260 100755 --- a/runscripts/external_pathway/vioAE.sh +++ b/runscripts/external_pathway/vioAE.sh @@ -18,28 +18,28 @@ export PYTHONPATH="/user/home/ig13470/wholecell3/wcm2024/wcEcoli/" ## Create and Add FireWorks to the Launchpad cd /user/home/ig13470/wholecell3/wcm2024/wcEcoli/wholecell/fireworks/ -#DESC="new_gene_expression_pred_ks_338_031" PLOTS="NEW_GENE" \ -#VARIANT="new_gene_expression" FIRST_VARIANT_INDEX=4 LAST_VARIANT_INDEX=7 \ -#NEW_GENES="vioAE_meta" \ -#CACHED_SIM_DATA=0 PARALLEL_PARCA=1 \ -#SINGLE_DAUGHTERS=1 N_GENS=8 N_INIT_SIMS=1 \ -#LAUNCHPAD_FILE='/user/home/ig13470/wholecell3/wcm2024/wcEcoli/wholecell/fireworks/my_launchpad.yaml' \ -#python /user/home/ig13470/wholecell3/wcm2024/wcEcoli/runscripts/fireworks/fw_queue.py -# -#DESC="new_gene_expression_no_react" PLOTS="NEW_GENE" \ -#VARIANT="new_gene_expression" FIRST_VARIANT_INDEX=4 LAST_VARIANT_INDEX=7 \ -#NEW_GENES="vioAE" \ -#CACHED_SIM_DATA=0 PARALLEL_PARCA=1 \ -#SINGLE_DAUGHTERS=1 N_GENS=8 N_INIT_SIMS=1 \ -#LAUNCHPAD_FILE='/user/home/ig13470/wholecell3/wcm2024/wcEcoli/wholecell/fireworks/my_launchpad.yaml' \ -#python /user/home/ig13470/wholecell3/wcm2024/wcEcoli/runscripts/fireworks/fw_queue.py +DESC="new_gene_expression_pred_ks_338_031" PLOTS="NEW_GENE" \ +VARIANT="new_gene_internal_shift" FIRST_VARIANT_INDEX=1 LAST_VARIANT_INDEX=3 \ +NEW_GENES="vioAE_meta" \ +CACHED_SIM_DATA=0 PARALLEL_PARCA=1 \ +SINGLE_DAUGHTERS=1 N_GENS=8 N_INIT_SIMS=1 \ +LAUNCHPAD_FILE='/user/home/ig13470/wholecell3/wcm2024/wcEcoli/wholecell/fireworks/my_launchpad.yaml' \ +python /user/home/ig13470/wholecell3/wcm2024/wcEcoli/runscripts/fireworks/fw_queue.py -DESC="wildtype 3 seeds" \ -FIRST_VARIANT_INDEX=0 LAST_VARIANT_INDEX=0 \ +DESC="new_gene_expression_no_react" PLOTS="NEW_GENE" \ +VARIANT="new_gene_internal_shift" FIRST_VARIANT_INDEX=1 LAST_VARIANT_INDEX=3 \ +NEW_GENES="vioAE" \ CACHED_SIM_DATA=0 PARALLEL_PARCA=1 \ -SINGLE_DAUGHTERS=1 N_GENS=8 N_INIT_SIMS=3 \ +SINGLE_DAUGHTERS=1 N_GENS=8 N_INIT_SIMS=1 \ LAUNCHPAD_FILE='/user/home/ig13470/wholecell3/wcm2024/wcEcoli/wholecell/fireworks/my_launchpad.yaml' \ python /user/home/ig13470/wholecell3/wcm2024/wcEcoli/runscripts/fireworks/fw_queue.py +#DESC="wildtype 3 seeds" \ +#FIRST_VARIANT_INDEX=0 LAST_VARIANT_INDEX=0 \ +#CACHED_SIM_DATA=0 PARALLEL_PARCA=1 \ +#SINGLE_DAUGHTERS=1 N_GENS=8 N_INIT_SIMS=2 \ +#LAUNCHPAD_FILE='/user/home/ig13470/wholecell3/wcm2024/wcEcoli/wholecell/fireworks/my_launchpad.yaml' \ +#python /user/home/ig13470/wholecell3/wcm2024/wcEcoli/runscripts/fireworks/fw_queue.py + ## Launch Rockets to collect the FireWorks (created by fw_queue.py) from the Launchpad (MongoDB hosted on MLab via Heroku) and run them on the Queue (BlueCrystal) nohup qlaunch -r -l my_launchpad.yaml -w my_fworker.yaml -q my_qadapter.yaml rapidfire --nlaunches infinite --sleep 30 --maxjobs_queue 100 From 8505438ebc09214f6a3682740cbac6db3ca87377 Mon Sep 17 00:00:00 2001 From: ioanagherman Date: Wed, 20 Mar 2024 14:13:59 +0000 Subject: [PATCH 06/34] cleaned the code (removed print statements) --- .../multigen/molecules_external_pathway.py | 1 - .../analysis/multigen/new_gene_counts.py | 1 - .../single/flux_external_metabolic_pathway.py | 11 ------- .../ecoli/analysis/single/new_gene_counts.py | 1 - .../processes/metabolism_external_pathway.py | 5 +--- .../sim/variants/new_gene_internal_shift.py | 1 - .../process/metabolism_external_pathway.py | 2 +- reconstruction/ecoli/knowledge_base_raw.py | 10 ------- runscripts/external_pathway/vioAE.sh | 30 ++++--------------- 9 files changed, 8 insertions(+), 54 deletions(-) diff --git a/models/ecoli/analysis/multigen/molecules_external_pathway.py b/models/ecoli/analysis/multigen/molecules_external_pathway.py index 3fb3a322e..e744a911a 100644 --- a/models/ecoli/analysis/multigen/molecules_external_pathway.py +++ b/models/ecoli/analysis/multigen/molecules_external_pathway.py @@ -44,7 +44,6 @@ def do_plot(self, seedOutDir, plotOutDir, plotOutFileName, simDataFile, plt.figure() plt.xlabel("Time (min)") plt.title("Molecule counts") - print(molecule_names.shape) for m in range(len(molecule_names)): plt.subplot(int(math.sqrt(len(molecule_names)))+1, int(math.sqrt(len(molecule_names)))+1, m+1) diff --git a/models/ecoli/analysis/multigen/new_gene_counts.py b/models/ecoli/analysis/multigen/new_gene_counts.py index 17873a630..11f9f89c2 100644 --- a/models/ecoli/analysis/multigen/new_gene_counts.py +++ b/models/ecoli/analysis/multigen/new_gene_counts.py @@ -25,7 +25,6 @@ def do_plot(self, seedOutDir, plotOutDir, plotOutFileName, simDataFile, cell_paths = self.ap.get_cells() sim_dir = cell_paths[0] - print(sim_dir) simOutDir = os.path.join(sim_dir, 'simOut') # Determine new gene ids diff --git a/models/ecoli/analysis/single/flux_external_metabolic_pathway.py b/models/ecoli/analysis/single/flux_external_metabolic_pathway.py index c1733b10d..9c7305ba5 100644 --- a/models/ecoli/analysis/single/flux_external_metabolic_pathway.py +++ b/models/ecoli/analysis/single/flux_external_metabolic_pathway.py @@ -22,27 +22,16 @@ def do_plot(self, simOutDir, plotOutDir, plotOutFileName, simDataFile, validatio if not sim_data.process.metabolism_external_pathway.has_external_pathway: print("This simulation does not have an external pathway") return - cell_density = sim_data.constants.cell_density # Listeners used main_reader = TableReader(os.path.join(simOutDir, 'Main')) initial_time = main_reader.readAttribute('initialTime') fba_results = TableReader(os.path.join(simOutDir, 'FBAResults')) - mass_table = TableReader(os.path.join(simOutDir, 'Mass')) # Load data time = main_reader.readColumn('time') - initial_time fluxes_external_pathway = fba_results.readColumn('externalPathwayFluxes') - # Calculate coefficients to be used to convert flux units from - # mM/s to mmol/gCDW/h - #cell_mass = mass_table.readColumn('cellMass') - #dry_mass = mass_table.readColumn('dryMass') - #conversion_coeffs = ( - # dry_mass / cell_mass - # * cell_density.asNumber(MASS_UNITS / VOLUME_UNITS) - #) - # Fluxes plt.figure() diff --git a/models/ecoli/analysis/single/new_gene_counts.py b/models/ecoli/analysis/single/new_gene_counts.py index c2b586b47..fbefcb2a9 100644 --- a/models/ecoli/analysis/single/new_gene_counts.py +++ b/models/ecoli/analysis/single/new_gene_counts.py @@ -26,7 +26,6 @@ def do_plot(self, simOutDir, plotOutDir, plotOutFileName, simDataFile, monomer_sim_data['id'])) new_gene_monomer_ids = [mRNA_monomer_id_dict.get(mRNA_id) for mRNA_id in new_gene_mRNA_ids] - print(new_gene_monomer_ids) if len(new_gene_mRNA_ids) == 0: print("This plot is intended to be run on simulations where the" " new gene option was enabled, but no new gene mRNAs were " diff --git a/models/ecoli/processes/metabolism_external_pathway.py b/models/ecoli/processes/metabolism_external_pathway.py index 8f7166df2..ec0b7fc7b 100644 --- a/models/ecoli/processes/metabolism_external_pathway.py +++ b/models/ecoli/processes/metabolism_external_pathway.py @@ -72,8 +72,7 @@ def calculateRequest(self): self.cell_volume = self.cell_mass / self.cell_density self.dcw_to_volume = self.cell_density * (self.dry_mass / self.cell_mass) - print('Molecules before ', self.molecule_dict) - print('Enzymes before ', self.enzymes_dict) + self.molecules_required, self.all_molecule_changes, self.flux = self.molecules_to_next_time_step( self.molecule_dict, self.enzymes_dict, self.cell_volume, self.n_avogadro, self.timeStepSec(), method="LSODA") @@ -83,8 +82,6 @@ def calculateRequest(self): def evolveState(self): if self.external_pathway_exists: - print('Flux ', self.flux) - print('Molecules ', self.all_molecule_changes) self.writeToListener('FBAResults', 'externalPathwayFluxes', self.flux) # Increment changes in molecule counts self.molecules.countsInc(self.all_molecule_changes) diff --git a/models/ecoli/sim/variants/new_gene_internal_shift.py b/models/ecoli/sim/variants/new_gene_internal_shift.py index 058c5b3ba..ebefc424d 100644 --- a/models/ecoli/sim/variants/new_gene_internal_shift.py +++ b/models/ecoli/sim/variants/new_gene_internal_shift.py @@ -171,7 +171,6 @@ def get_new_gene_expression_factor_and_translation_efficiency(sim_data, index): expression_factor = ( 10**(NEW_GENE_EXPRESSION_FACTORS[expression_list_index] - 1)) trl_eff_value = NEW_GENE_TRANSLATION_EFFICIENCY_VALUES[trl_eff_list_index] - print(expression_factor, trl_eff_value) return expression_factor, trl_eff_value diff --git a/reconstruction/ecoli/dataclasses/process/metabolism_external_pathway.py b/reconstruction/ecoli/dataclasses/process/metabolism_external_pathway.py index d55d61744..3a906efa9 100644 --- a/reconstruction/ecoli/dataclasses/process/metabolism_external_pathway.py +++ b/reconstruction/ecoli/dataclasses/process/metabolism_external_pathway.py @@ -91,7 +91,7 @@ def __init__(self, raw_data, sim_data): print('There are external genes, but no external pathway') self.has_external_pathway = False else: - print('There is an external pathway.') + print('There is an external pathway and external genes.') self.has_external_pathway = True else: print('There is no external pathway and no external genes.') diff --git a/reconstruction/ecoli/knowledge_base_raw.py b/reconstruction/ecoli/knowledge_base_raw.py index b28ef7b19..499bc8d9f 100644 --- a/reconstruction/ecoli/knowledge_base_raw.py +++ b/reconstruction/ecoli/knowledge_base_raw.py @@ -263,16 +263,6 @@ def __init__(self, operons_on: bool, remove_rrna_operons: bool, remove_rrff: boo self.new_gene_added_data.update({f: nested_attr + f}) - # RNA sequence data also needs to be joined to an existing file, - # nested under the rna_seq_data - #rnaseq_path = os.path.join(new_gene_path, 'rnaseq_rsem_tpm_mean.tsv') - #assert os.path.isfile(os.path.join(FLAT_DIR,rnaseq_path)), ( - # f"File rnaseq_rsem_tpm_mean.tsv must be present in the" - # f" new_genes_data subdirectory {new_gene_subdir}.") - #self.list_of_dict_filenames.append(rnaseq_path) - #self.new_gene_added_data.update({ - # 'rna_seq_data.rnaseq_rsem_tpm_mean': nested_attr + 'rnaseq_rsem_tpm_mean'}) - # Load raw data from TSV files for filename in self.list_of_dict_filenames: self._load_tsv(FLAT_DIR, os.path.join(FLAT_DIR, filename)) diff --git a/runscripts/external_pathway/vioAE.sh b/runscripts/external_pathway/vioAE.sh index bd306a260..e942ebeb7 100755 --- a/runscripts/external_pathway/vioAE.sh +++ b/runscripts/external_pathway/vioAE.sh @@ -2,44 +2,26 @@ # chmod u+x FireWorksBox_1.sh # ./FireWorksBox_1.sh -## Initialise the Database (is this really the only way to do this?) -cd /user/home/ig13470/wholecell3/wcm2024/wcEcoli/wholecell/fireworks/ -lpad -l my_launchpad.yaml reset - -## Pre Simulation Requirements -cd /user/home/ig13470/wholecell3/wcm2024/wcEcoli/ - -##Compile Cython code -make clean compile - -# Set the $PYTHONPATH: -export PYTHONPATH="/user/home/ig13470/wholecell3/wcm2024/wcEcoli/" ## Create and Add FireWorks to the Launchpad -cd /user/home/ig13470/wholecell3/wcm2024/wcEcoli/wholecell/fireworks/ +cd wholecell/fireworks/ DESC="new_gene_expression_pred_ks_338_031" PLOTS="NEW_GENE" \ VARIANT="new_gene_internal_shift" FIRST_VARIANT_INDEX=1 LAST_VARIANT_INDEX=3 \ NEW_GENES="vioAE_meta" \ CACHED_SIM_DATA=0 PARALLEL_PARCA=1 \ SINGLE_DAUGHTERS=1 N_GENS=8 N_INIT_SIMS=1 \ -LAUNCHPAD_FILE='/user/home/ig13470/wholecell3/wcm2024/wcEcoli/wholecell/fireworks/my_launchpad.yaml' \ -python /user/home/ig13470/wholecell3/wcm2024/wcEcoli/runscripts/fireworks/fw_queue.py +LAUNCHPAD_FILE='/wholecell/fireworks/my_launchpad.yaml' \ +python runscripts/fireworks/fw_queue.py DESC="new_gene_expression_no_react" PLOTS="NEW_GENE" \ VARIANT="new_gene_internal_shift" FIRST_VARIANT_INDEX=1 LAST_VARIANT_INDEX=3 \ NEW_GENES="vioAE" \ CACHED_SIM_DATA=0 PARALLEL_PARCA=1 \ SINGLE_DAUGHTERS=1 N_GENS=8 N_INIT_SIMS=1 \ -LAUNCHPAD_FILE='/user/home/ig13470/wholecell3/wcm2024/wcEcoli/wholecell/fireworks/my_launchpad.yaml' \ -python /user/home/ig13470/wholecell3/wcm2024/wcEcoli/runscripts/fireworks/fw_queue.py +LAUNCHPAD_FILE='/wholecell/fireworks/my_launchpad.yaml' \ +python runscripts/fireworks/fw_queue.py -#DESC="wildtype 3 seeds" \ -#FIRST_VARIANT_INDEX=0 LAST_VARIANT_INDEX=0 \ -#CACHED_SIM_DATA=0 PARALLEL_PARCA=1 \ -#SINGLE_DAUGHTERS=1 N_GENS=8 N_INIT_SIMS=2 \ -#LAUNCHPAD_FILE='/user/home/ig13470/wholecell3/wcm2024/wcEcoli/wholecell/fireworks/my_launchpad.yaml' \ -#python /user/home/ig13470/wholecell3/wcm2024/wcEcoli/runscripts/fireworks/fw_queue.py -## Launch Rockets to collect the FireWorks (created by fw_queue.py) from the Launchpad (MongoDB hosted on MLab via Heroku) and run them on the Queue (BlueCrystal) +## Launch Rockets to collect the FireWorks (created by fw_queue.py) from the Launchpad (MongoDB hosted on MLab via Heroku) and run them on the Queue nohup qlaunch -r -l my_launchpad.yaml -w my_fworker.yaml -q my_qadapter.yaml rapidfire --nlaunches infinite --sleep 30 --maxjobs_queue 100 From af978914e7aa6de5e76fcb9b9f82d5e073c576e4 Mon Sep 17 00:00:00 2001 From: ioanagherman Date: Wed, 20 Mar 2024 16:26:50 +0000 Subject: [PATCH 07/34] Documentation added on the addition of the external metabolic pathway --- docs/misc/add_new_gene.md | 57 +++++++++++++++++++++++++++++++++++++++ 1 file changed, 57 insertions(+) diff --git a/docs/misc/add_new_gene.md b/docs/misc/add_new_gene.md index 5d0de1eea..6a548cdf5 100644 --- a/docs/misc/add_new_gene.md +++ b/docs/misc/add_new_gene.md @@ -184,3 +184,60 @@ Note: The numbers after new_gene must be integers. A different simulation will r `python models/ecoli/analysis/variant/doubling_time_histogram.py` `python models/ecoli/analysis/variant/new_gene_translation_efficiency_heatmaps.py` + +--- +Addition of new metabolic genes
(in progress) + +* In the genome insertion directory ('reconstruction/ecoli/flat/new_gene_data/gene_names') populate the files: + + * metabolic_reaction_external.tsv - list the reactions from the additional pathway. Specify for each reaction their: + + * id (e.g. ‘rxnpath1’), + + * Stoichiometry represented as a dictionary where the keys are the reactants and the products, and the values represent the coefficients for each reactant (positive coefficient) or product (negative coefficient) + + * Direction for reading the reaction (e.g. L2R) + + * A list containing the name of the enzyme catalyzing the reactions. At the moment each reaction can only be catalyzed by 1 enzyme. + + * A list containing the name of the substrate of the reaction. At the moment, each reaction can only have one substrate. + + * The turnover number of an enzyme (kcat) + + * The Michaelis Menten constant (KM) + + * metabolites.tsv - list of the metabolites produced by the reaction. Specify for each of them: + + * Their ID as shown on Ecocyc (e.g. CPD-11890) + + * Their common name according to Ecocyc. + + * A list of synonyms. This can be empty. + + * Chemical formula (e.g. C11H9) + + * Molecular charge. + + * Smiles. + + * If these files are not empty, the WCM will run the metabolic_reactions_external process. + +A new process was created to represent the metabolism corresponding to these reactions. This new process is based on Michaelis Menten kinetics and it is run at each time step before the Metabolism process. To achieve this, two Python files were added: + + * reconstruction/ecoli/dataclasses/process/metabolism_external_pathway.py an – This script loads the raw data from the files populated above and stores it in the sim_data object. It also makes it accessible as an instance of the new process class. In this file we also define the methods that represent the Michaelis Menten model. This script is called when runParca is run. + + * models/ecoli/metabolism_external_pathway.py is called when running the sim. The script defines a class corresponding to the process that initializes all the variables necessary, it calls the Michaelis Menten model and updates the state of the cell accordingly. Furthermore, in this sript it is possible to update any listeners with the data produced. + +Analysis scripts + +Four analysis scripts are added when there is data in the metabolic_reaction_external.tsv and metabolites.tsv: + + * models/ecoli/analysis/single/flux_external_metabolic_pathway.py - creates a plot of the fluxes corresponding to the external reactions added. This will be one plot for each cell. + + * models/ecoli/analysis/multigen/flux_external_metabolic_pathway.py - creates a plot of the fluxes corresponding to the external reactions added. This will show all these fluxes for all generations simulated in one variant. + + * models/ecoli/analysis/single/molecules_external_pathway.py - creates plots of molecule counts for each molecule involved in the external reactions, for each cell separately, from every generation. + + * models/ecoli/analysis/multigen/molecules_external_pathway.py - creates plots of molecule counts for each molecule involved in the external reactions, for all cells from all generations corresponding to a variant. + +The variants and the sample commands for running this code are the same as in the case of gene addition (without any metabolic pathway involved). \ No newline at end of file From bc36c55f20f3321f6cc787a9173557a282d39aaa Mon Sep 17 00:00:00 2001 From: ioanagherman Date: Fri, 22 Mar 2024 12:39:59 +0000 Subject: [PATCH 08/34] correction made to the documentation --- docs/misc/add_new_gene.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/docs/misc/add_new_gene.md b/docs/misc/add_new_gene.md index 6a548cdf5..58a923f1b 100644 --- a/docs/misc/add_new_gene.md +++ b/docs/misc/add_new_gene.md @@ -16,6 +16,8 @@ Addition of new genes to the chromosome
(in progress) * Currently supported optional data files: * `rna_half_lives.tsv` - Can specify if desired, otherwise will default to average of the other RNAs * `protein_half_lives_measured` - Can specify if desired, otherwise will default to average of the other proteins + * `metabolic_reactions_external` - Can specify if an external metabolic pathway uses the genes added + * `metabolites` - Can specify is an external metabolic pathway uses the genes added With `new_genes_option != 'off'`, `KnowledgeBaseEcoli` uses the information in the new gene subdirectory, which is specified in the command line via `new_genes_option`, to make the addition of the gene to the Ecoli chromosome. For example: `python runscripts/manual/runParca.py --new-genes 'gfp'` will add the genes from the `new_genes_data/gfp` subdirectory to the Ecoli chromosome and then run the ParCa. From b8a6b2cfb400657f0c284ea010017327e8490417 Mon Sep 17 00:00:00 2001 From: Gwanggyu Sun <32276711+ggsun@users.noreply.github.com> Date: Fri, 23 Feb 2024 14:10:14 -0800 Subject: [PATCH 09/34] Add variant analysis script for rRNA gene copy numbers (#1440) --- models/ecoli/analysis/variant/__init__.py | 1 + .../variant/rrna_gene_copy_numbers.py | 82 +++++++++++++++++++ 2 files changed, 83 insertions(+) create mode 100644 models/ecoli/analysis/variant/rrna_gene_copy_numbers.py diff --git a/models/ecoli/analysis/variant/__init__.py b/models/ecoli/analysis/variant/__init__.py index ca22f3f9d..c54b11757 100644 --- a/models/ecoli/analysis/variant/__init__.py +++ b/models/ecoli/analysis/variant/__init__.py @@ -32,6 +32,7 @@ "ribosome_crowding.py", "rnap_counts_histogram.py", "rnap_crowding.py", + "rrna_gene_copy_numbers.py", "tfFit.py", "tfFitComparison.py", "time_step.py", diff --git a/models/ecoli/analysis/variant/rrna_gene_copy_numbers.py b/models/ecoli/analysis/variant/rrna_gene_copy_numbers.py new file mode 100644 index 000000000..78f13cee9 --- /dev/null +++ b/models/ecoli/analysis/variant/rrna_gene_copy_numbers.py @@ -0,0 +1,82 @@ +""" +Compares the total copy numbers of all genes encoding rRNAs between variants. +""" + +import os + +from matplotlib import pyplot as plt +# noinspection PyUnresolvedReferences +import numpy as np + +from models.ecoli.analysis import variantAnalysisPlot +from wholecell.analysis.analysis_tools import (exportFigure, + read_stacked_columns) +from wholecell.io.tablereader import TableReader + + +GENE_ID_TO_RRNA_OPERON_ID = { + 'EG30084': 'rrnA', + 'EG30085': 'rrnB', + 'EG30086': 'rrnC', + 'EG30087': 'rrnD', + 'EG30088': 'rrnE', + 'EG30089': 'rrnG', + 'EG30090': 'rrnH', + } + +class Plot(variantAnalysisPlot.VariantAnalysisPlot): + def do_plot(self, inputDir, plotOutDir, plotOutFileName, simDataFile, validationDataFile, metadata): + if self.ap.n_generation <= 4: + print('Not enough generations to run analysis.') + return + + variants = self.ap.get_variants() + n_variants = len(variants) + variant_index_to_copy_number = {} + + for variant in variants: + cell_paths = self.ap.get_cells(variant=[variant]) + + # Get gene_ids attribute from reference cell path + reference_cell_path = cell_paths[0] + sim_out_dir = os.path.join(reference_cell_path, 'simOut') + rna_synth_prob_reader = TableReader( + os.path.join(sim_out_dir, 'RnaSynthProb')) + gene_ids = rna_synth_prob_reader.readAttribute('gene_ids') + + # Get indexes of 16S genes (first gene in each operon) + rrna_gene_indexes = np.array([ + gene_ids.index(key) for key in GENE_ID_TO_RRNA_OPERON_ID.keys() + ]) + + # Get copy numbers of 16S genes + rrna_gene_copy_numbers = read_stacked_columns( + cell_paths, 'RnaSynthProb', 'gene_copy_number', + ignore_exception=True, fun=lambda x: x[:, rrna_gene_indexes]) + avg_total_rrna_gene_copy_number = rrna_gene_copy_numbers.sum(axis=1).mean() + + variant_index_to_copy_number[variant] = avg_total_rrna_gene_copy_number + + fig = plt.figure(figsize=(0.8*n_variants, 3)) + + # Plot one bar for each variant + ax0 = fig.add_subplot(1, 1, 1) + for i, avg_copy_numbers in enumerate(variant_index_to_copy_number.values()): + ax0.bar( + i, avg_copy_numbers, width=0.7, alpha=0.5, color='C0') + + ax0.set_xticks(np.arange(n_variants)) + ax0.set_xticklabels(variants) + ax0.set_xlim([-0.8, n_variants]) + ax0.set_xlabel('Variant indexes') + ax0.set_ylabel('Total rRNA gene copy numbers') + ax0.spines['top'].set_visible(False) + ax0.spines['right'].set_visible(False) + + plt.tight_layout() + exportFigure(plt, plotOutDir, plotOutFileName, metadata) + plt.close('all') + + +if __name__ == "__main__": + Plot().cli() From 67ed5953a5e78592a01eaafa85d2e7e14cb19ba8 Mon Sep 17 00:00:00 2001 From: Gwanggyu Sun <32276711+ggsun@users.noreply.github.com> Date: Tue, 27 Feb 2024 14:24:25 -0800 Subject: [PATCH 10/34] Add ParCa analysis to plot rRNA operon positions and structures (#1441) --- models/ecoli/analysis/parca/__init__.py | 1 + .../analysis/parca/rRNA_operon_structures.py | 173 ++++++++++++++++++ 2 files changed, 174 insertions(+) create mode 100644 models/ecoli/analysis/parca/rRNA_operon_structures.py diff --git a/models/ecoli/analysis/parca/__init__.py b/models/ecoli/analysis/parca/__init__.py index 8e627784e..8f8848bca 100644 --- a/models/ecoli/analysis/parca/__init__.py +++ b/models/ecoli/analysis/parca/__init__.py @@ -16,6 +16,7 @@ 'mRNA_cistron_expression.py', 'mRNA_transcript_table.py', 'ppgpp_expression.py', + 'rRNA_operon_structures.py', 'start_codon_distribution.py', 'target_vs_actual_ppgpp_fold_change.py', 'tf_target.py', diff --git a/models/ecoli/analysis/parca/rRNA_operon_structures.py b/models/ecoli/analysis/parca/rRNA_operon_structures.py new file mode 100644 index 000000000..d73d291d9 --- /dev/null +++ b/models/ecoli/analysis/parca/rRNA_operon_structures.py @@ -0,0 +1,173 @@ +""" +Plots the locations and structures of rRNA operons for a particular sim_data +object. +""" + +import pickle + +from matplotlib import pyplot as plt +# noinspection PyUnresolvedReferences +import numpy as np + +from models.ecoli.analysis import parcaAnalysisPlot +from wholecell.analysis.analysis_tools import exportFigure +from wholecell.utils import units + + +TU_ID_TO_RRNA_OPERON_ID = { + 'TU0-1181[c]': 'rrnA', + 'TU0-1182[c]': 'rrnB', + 'TU0-1183[c]': 'rrnC', + 'TU0-1191[c]': 'rrnD', + 'TU0-1186[c]': 'rrnE', + 'TU0-1187[c]': 'rrnG', + 'TU0-1189[c]': 'rrnH', + } + + +class Plot(parcaAnalysisPlot.ParcaAnalysisPlot): + def do_plot(self, input_dir, plot_out_dir, plot_out_filename, sim_data_file, validation_data_file, metadata): + with open(sim_data_file, 'rb') as f: + sim_data = pickle.load(f) + + # Load replichore lengths + replichore_lengths = sim_data.process.replication.replichore_lengths + + # Load attributes of rRNA transcription units + rna_data = sim_data.process.transcription.rna_data + rRNA_data = rna_data[rna_data['is_rRNA']] + rRNA_ids = rRNA_data['id'] + rRNA_id_to_index = {rRNA_id: i for (i, rRNA_id) in enumerate(rRNA_ids)} + rRNA_start_coordinates = rRNA_data['replication_coordinate'] + rRNA_lengths = rRNA_data['length'].asNumber(units.nt) + rRNA_is_forward = rRNA_data['is_forward'] + rRNA_end_coordinates = ( + rRNA_start_coordinates + + 2 * (rRNA_is_forward.astype(int) - 0.5) * rRNA_lengths) + + # Load attributes of genes that are part of rRNA transcription units + cistron_data = sim_data.process.transcription.cistron_data + gene_start_coordinates = [] + gene_end_coordinates = [] + gene_names = [] + gene_is_rRNA = [] + + for rRNA_id in rRNA_ids: + # Extract data for cistrons belonging to this rRNA operon + rRNA_index = rRNA_id_to_index[rRNA_id] + cistron_indexes = sim_data.process.transcription.rna_id_to_cistron_indexes( + rRNA_id) + gene_ids = cistron_data['gene_id'][cistron_indexes] + cistron_start_coordinates = cistron_data['replication_coordinate'][cistron_indexes] + cistron_lengths = cistron_data['length'][cistron_indexes].asNumber(units.nt) + cistron_is_forward = cistron_data['is_forward'][cistron_indexes] + cistron_is_rRNA = cistron_data['is_rRNA'][cistron_indexes] + cistron_end_coordinates = ( + cistron_start_coordinates + + 2 * (cistron_is_forward.astype(int) - 0.5) * cistron_lengths) + + # Append data to list + gene_start_coordinates.append( + np.abs(cistron_start_coordinates - rRNA_start_coordinates[rRNA_index]) + ) + gene_end_coordinates.append( + np.abs(cistron_end_coordinates - rRNA_start_coordinates[rRNA_index]) + ) + gene_names.append( + [sim_data.common_names.get_common_name(x) for x in gene_ids] + ) + gene_is_rRNA.append(cistron_is_rRNA) + + def convert_to_theta(coordinates): + """ + Converts genomic coordinates to values of theta in polar + coordinates. + """ + # Flatten and remove NaN's + coordinates_flat = coordinates.flatten() + genomic_coordinates = coordinates_flat[~np.isnan(coordinates_flat)] + + # Convert to theta (assuming oriC is at np.pi/2) + thetas = -np.pi*(genomic_coordinates / replichore_lengths[(genomic_coordinates < 0).astype(int)]) + + return thetas + + rRNA_start_thetas = convert_to_theta(rRNA_start_coordinates) + rRNA_end_thetas = convert_to_theta(rRNA_end_coordinates) + + plt.figure(figsize=(9, 4)) + + # Plot locations of rRNA operons on circular chromosome + ax0 = plt.subplot(1, 2, 1, projection='polar') + + # Remove grid and labels + ax0.set_theta_offset(np.pi / 2) # Put 0 deg at the top instead of the right side + ax0.grid(False) + ax0.set_yticklabels([]) + ax0.set_ylim([0, 1.5]) + ax0.axis("off") + + # Plot collision locations and genome outline + ax0.plot( + np.linspace(0, 2 * np.pi, 1000), np.repeat(1, 1000), color='k', + lw=0.5) + ax0.vlines(0, 0.98, 1.02, color='k', lw=0.5) + ax0.vlines(np.pi, 0.98, 1.02, color='k', lw=0.5) + + # Plot locations of rRNA transcripts + for (s, e) in zip(rRNA_start_thetas, rRNA_end_thetas): + ax0.plot( + np.linspace(s, e, 10), np.repeat(1, 10), color='k', lw=2) + + # Add labels + ax0.text(0, 0.87, "oriC", ha="center", va="center") + ax0.text(np.pi, 0.9, "terC", ha="center", va="center") + + # Plot locations of genes within each rRNA operon + ax1 = plt.subplot(1, 2, 2) + + # Remove grid and labels + ax1.grid(False) + ax1.set_yticklabels([]) + ax1.set_ylim([-2, 8]) + ax1.axis("off") + + # Plot locations of genes within each operon + for i, (rRNA_id, operon_id) in enumerate(TU_ID_TO_RRNA_OPERON_ID.items()): + rRNA_index = rRNA_id_to_index[rRNA_id] + + # Plot lines for template DNA and boundaries of operons + ax1.hlines(6 - i, -500, 6500, color='k', lw=1) + ax1.hlines(6 - i, 0, rRNA_lengths[rRNA_index], color='k', lw=2) + + # Plot lines for the boundaries of genes + for (sc, ec, name, is_rRNA) in zip( + gene_start_coordinates[rRNA_index], + gene_end_coordinates[rRNA_index], + gene_names[rRNA_index], + gene_is_rRNA[rRNA_index]): + if is_rRNA: + ax1.hlines(6 - i, sc, ec, color='k', lw=5) + + # Position adjustments needed to prevent overlapping text + adj = 0 + if name == 'rrfD': + adj = -175 + elif name == 'rrfF': + adj = 175 + + # Add labels for gene names + ax1.text((sc + ec) / 2 + adj, 6.4 - i, name, ha="center", va="center") + + # Use lighter color for non-rRNA genes + else: + ax1.hlines(6 - i, sc, ec, color='#bbbbbb', lw=5) + + ax1.text(-1000, 6 - i, operon_id, ha="center", va="center") + + exportFigure(plt, plot_out_dir, plot_out_filename, metadata) + plt.close('all') + + +if __name__ == "__main__": + Plot().cli() From 073f599134f16a6a5e2d7ded440d471f2db0634f Mon Sep 17 00:00:00 2001 From: Gwanggyu Sun <32276711+ggsun@users.noreply.github.com> Date: Fri, 1 Mar 2024 13:45:49 -0800 Subject: [PATCH 11/34] Add cohort analysis to generate table of subgenerationally expressed genes (#1442) * Add analysis script to generate tables of subgenerationally expressed genes * Add IGNORE_FIRST_N_GENS option to subgenerational expression table plot * Skip analysis if not enough generations are run --- models/ecoli/analysis/cohort/__init__.py | 1 + .../subgenerational_expression_table.py | 131 ++++++++++++++++++ 2 files changed, 132 insertions(+) create mode 100644 models/ecoli/analysis/cohort/subgenerational_expression_table.py diff --git a/models/ecoli/analysis/cohort/__init__.py b/models/ecoli/analysis/cohort/__init__.py index f59ceab78..918fc66ae 100644 --- a/models/ecoli/analysis/cohort/__init__.py +++ b/models/ecoli/analysis/cohort/__init__.py @@ -20,6 +20,7 @@ "proteinCopyNumberDistribution.py", "replisome_rnap_collision_per_gene.py", "rnaCopyNumberDistribution.py", + "subgenerational_expression_table.py", # "transcriptFrequency.py", # "transcriptionGenomeCoverage.py", # "transcriptionGenomeCoverageSecondHalf.py", diff --git a/models/ecoli/analysis/cohort/subgenerational_expression_table.py b/models/ecoli/analysis/cohort/subgenerational_expression_table.py new file mode 100644 index 000000000..7f1e814ff --- /dev/null +++ b/models/ecoli/analysis/cohort/subgenerational_expression_table.py @@ -0,0 +1,131 @@ +""" +Generates a table of genes that are subgenerationally expressed, with their +expression frequencies and average/maximum mRNA/protein counts. +""" + +import pickle +import os + +import csv +# noinspection PyUnresolvedReferences +import numpy as np + +from models.ecoli.analysis import cohortAnalysisPlot +from wholecell.analysis.analysis_tools import read_stacked_columns +from wholecell.io.tablereader import TableReader + + +IGNORE_FIRST_N_GENS = 8 + + +class Plot(cohortAnalysisPlot.CohortAnalysisPlot): + def do_plot(self, variantDir, plotOutDir, plotOutFileName, simDataFile, validationDataFile, metadata): + with open(simDataFile, 'rb') as f: + sim_data = pickle.load(f) + + if self.ap.n_generation <= IGNORE_FIRST_N_GENS: + print('Skipping analysis - not enough generations run.') + return + + # Get list of cistron IDs from sim_data + cistron_data = sim_data.process.transcription.cistron_data + cistron_ids = cistron_data['id'] + + # Filter list for cistron IDs with associated protein ids + cistron_id_to_protein_id = { + protein['cistron_id']: protein['id'] + for protein in sim_data.process.translation.monomer_data + } + mRNA_cistron_ids = [ + cistron_id for cistron_id in cistron_ids + if cistron_id in cistron_id_to_protein_id] + + # Get IDs of associated monomers and genes + monomer_ids = [ + cistron_id_to_protein_id.get(cistron_id, None) + for cistron_id in mRNA_cistron_ids] + cistron_id_to_gene_id = { + cistron['id']: cistron['gene_id'] for cistron in cistron_data + } + gene_ids = [ + cistron_id_to_gene_id[cistron_id] + for cistron_id in mRNA_cistron_ids] + + # Get subcolumn for mRNA cistron IDs in RNA counts table + cell_paths = self.ap.get_cells( + generation=np.arange(IGNORE_FIRST_N_GENS, self.ap.n_generation), + only_successful=True) + simOutDir = os.path.join(cell_paths[0], 'simOut') + rna_counts_reader = TableReader(os.path.join(simOutDir, 'RNACounts')) + mRNA_cistron_ids_rna_counts_table = rna_counts_reader.readAttribute( + 'mRNA_cistron_ids') + + # Get indexes of mRNA cistrons in this subcolumn + mRNA_cistron_id_to_index = { + cistron_id: i for (i, cistron_id) + in enumerate(mRNA_cistron_ids_rna_counts_table) + } + mRNA_cistron_indexes = np.array([ + mRNA_cistron_id_to_index[cistron_id] for cistron_id + in mRNA_cistron_ids + ]) + + # Get boolean matrix for whether each gene's mRNA exists in each + # generation or not + mRNA_exists_in_gen = read_stacked_columns( + cell_paths, 'RNACounts', 'mRNA_cistron_counts', + ignore_exception=True, fun=lambda x: x.sum(axis=0) > 0)[ + :, mRNA_cistron_indexes] + + # Divide by total number of cells to get probability + p_mRNA_exists_in_gen = ( + mRNA_exists_in_gen.sum(axis=0) / mRNA_exists_in_gen.shape[0]) + + # Get maximum counts of mRNAs for each gene across all timepoints + max_mRNA_counts = read_stacked_columns( + cell_paths, 'RNACounts', 'mRNA_cistron_counts', + ignore_exception=True).max(axis=0)[mRNA_cistron_indexes] + + # Get subcolumn for monomer IDs in monomer counts table + monomer_counts_reader = TableReader( + os.path.join(simOutDir, 'MonomerCounts')) + monomer_ids_monomer_counts_table = monomer_counts_reader.readAttribute( + 'monomerIds') + + # Get indexes of monomers in this subcolumn + monomer_id_to_index = { + monomer_id: i for (i, monomer_id) + in enumerate(monomer_ids_monomer_counts_table) + } + monomer_indexes = np.array([ + monomer_id_to_index[monomer_id] for monomer_id in monomer_ids + ]) + + # Get maximum counts of monomers for each gene across all timepoints + max_monomer_counts = read_stacked_columns( + cell_paths, 'MonomerCounts', 'monomerCounts', + ignore_exception=True).max(axis=0)[monomer_indexes] + + # Get indexes of subgenerationally expressed genes + subgen_exp_indexes = np.where(np.logical_and( + p_mRNA_exists_in_gen > 0, p_mRNA_exists_in_gen < 1 + ))[0] + + # Write data to table + with open(os.path.join(plotOutDir, plotOutFileName + '.tsv'), 'w') as f: + writer = csv.writer(f, delimiter='\t') + writer.writerow([ + 'gene_name', 'cistron_name', 'protein_name', + 'p_expressed', 'max_mRNA_count', 'max_protein_count' + ]) + + for i in subgen_exp_indexes: + writer.writerow([ + gene_ids[i], mRNA_cistron_ids[i], monomer_ids[i][:-3], + p_mRNA_exists_in_gen[i], max_mRNA_counts[i], + max_monomer_counts[i] + ]) + + +if __name__ == '__main__': + Plot().cli() From f64e337a6568cf0bbcec1e6617ea1b5b272e676e Mon Sep 17 00:00:00 2001 From: Gwanggyu Sun <32276711+ggsun@users.noreply.github.com> Date: Fri, 1 Mar 2024 15:23:30 -0800 Subject: [PATCH 12/34] Skip rRNA operon structures analysis if using nonstandard rRNA operon structures (#1443) * Skip rRNA operon structures analysis if using nonstandard rRNA operon structures * Fix numpy deprecation warning in 2CS --- .../ecoli/analysis/parca/rRNA_operon_structures.py | 7 +++++++ .../dataclasses/process/two_component_system.py | 12 ++++++++---- 2 files changed, 15 insertions(+), 4 deletions(-) diff --git a/models/ecoli/analysis/parca/rRNA_operon_structures.py b/models/ecoli/analysis/parca/rRNA_operon_structures.py index d73d291d9..b27c8caad 100644 --- a/models/ecoli/analysis/parca/rRNA_operon_structures.py +++ b/models/ecoli/analysis/parca/rRNA_operon_structures.py @@ -37,6 +37,13 @@ def do_plot(self, input_dir, plot_out_dir, plot_out_filename, sim_data_file, val rna_data = sim_data.process.transcription.rna_data rRNA_data = rna_data[rna_data['is_rRNA']] rRNA_ids = rRNA_data['id'] + + # If the list of rRNA IDs does not match the rRNA TU IDs, skip analysis + # (likely using rRNA operon structure variants) + if set(rRNA_ids) != set(TU_ID_TO_RRNA_OPERON_ID.keys()): + print('Skipping analysis - this analysis should be run for simulations with WT rRNA operon structures.') + return + rRNA_id_to_index = {rRNA_id: i for (i, rRNA_id) in enumerate(rRNA_ids)} rRNA_start_coordinates = rRNA_data['replication_coordinate'] rRNA_lengths = rRNA_data['length'].asNumber(units.nt) diff --git a/reconstruction/ecoli/dataclasses/process/two_component_system.py b/reconstruction/ecoli/dataclasses/process/two_component_system.py index 4c20ff175..e68f0d40f 100644 --- a/reconstruction/ecoli/dataclasses/process/two_component_system.py +++ b/reconstruction/ecoli/dataclasses/process/two_component_system.py @@ -609,6 +609,9 @@ def _make_dependency_matrix(self): response regulators, and ligand-bound histidine kinases for positively oriented networks) to their dependents. ''' + molecule_name_to_index = { + name: i for (i, name) in enumerate(self.molecule_names)} + dependencyMatrixI = [] dependencyMatrixJ = [] dependencyMatrixV = [] @@ -622,14 +625,15 @@ def _make_dependency_matrix(self): if self.molecule_names[independentMoleculeId] == "ATP[c]": dependencyMatrixATPJ = independentMoleculeIndex else: - dependentMoleculeId = int(np.where(self.molecule_names == self.independent_to_dependent_molecules[self.molecule_names[independentMoleculeId]])[0]) + dependentMoleculeId = molecule_name_to_index[ + self.independent_to_dependent_molecules[self.molecule_names[independentMoleculeId]]] dependencyMatrixI.append(dependentMoleculeId) dependencyMatrixJ.append(independentMoleculeIndex) dependencyMatrixV.append(-1) # ATP dependents: ADP, PI, WATER, PROTON) for ATPdependent in ["ADP[c]", "Pi[c]", "WATER[c]", "PROTON[c]"]: - dependencyMatrixI.append(int(np.where(self.molecule_names == ATPdependent)[0])) + dependencyMatrixI.append(molecule_name_to_index[ATPdependent]) dependencyMatrixJ.append(dependencyMatrixATPJ) if ATPdependent == "WATER[c]": dependencyMatrixV.append(1) @@ -640,11 +644,11 @@ def _make_dependency_matrix(self): if col == dependencyMatrixATPJ: continue else: - dependencyMatrixI.append(int(np.where(self.molecule_names == "Pi[c]")[0])) + dependencyMatrixI.append(molecule_name_to_index["Pi[c]"]) dependencyMatrixJ.append(col) dependencyMatrixV.append(1) - dependencyMatrixI.append(int(np.where(self.molecule_names == "WATER[c]")[0])) + dependencyMatrixI.append(molecule_name_to_index["WATER[c]"]) dependencyMatrixJ.append(col) dependencyMatrixV.append(-1) From 227b7ec5dc9ad97077e798b6361dbd1109c5a79a Mon Sep 17 00:00:00 2001 From: Jerry Morrison <1fish2@users.noreply.github.com> Date: Sat, 9 Mar 2024 16:49:11 -0800 Subject: [PATCH 13/34] doc: how to update a shared pyenv virtualenv * Add docs/maintaining_the_sherlock_environment.md. * Cross-links and minor updates in other docs. --- README.md | 8 +- docs/README.md | 3 +- docs/background.md | 4 +- docs/maintaining_the_sherlock_environment.md | 141 +++++++++++++++++++ docs/run.md | 30 ++-- wholecell/fireworks/README.md | 68 ++++++--- 6 files changed, 213 insertions(+), 41 deletions(-) create mode 100644 docs/maintaining_the_sherlock_environment.md diff --git a/README.md b/README.md index 99fbb075f..a5ae79ab1 100644 --- a/README.md +++ b/README.md @@ -222,9 +222,9 @@ To use the cached sim data file, set the `CACHED_SIM_DATA` environment variable DESC="Example run with cached sim data." CACHED_SIM_DATA=1 python runscripts/fireworks/fw_queue.py ``` -### Using an interactive Sherlock node to run a Fireworks workflow +### Using an interactive Sherlock connection to run a Fireworks workflow -To run queued simulations on an interactive Sherlock node: +To run queued simulations on an interactive connection to a Sherlock compute node: ```bash rlaunch rapidfire @@ -237,7 +237,7 @@ Don't do this on a Sherlock login node. ### Using the SLURM scheduler on Linux to run a Fireworks workflow -To run simulations on a Sherlock cluster (helpful when running more than one simulation): +To run simulations on a Sherlock compute cluster (helpful when running more than one simulation): ```bash qlaunch -r rapidfire --nlaunches infinite --sleep 5 @@ -246,7 +246,7 @@ qlaunch -r rapidfire --nlaunches infinite --sleep 5 The `qlaunch` command will run forever. Hit `Ctrl-C` to kill it once the console logs shows that all the simulation and analysis steps have finished. -`qlaunch` is relatively lightweight, so it might work on a Sherlock login node. +`qlaunch` is lightweight so it might be fine on a Sherlock login node. `qlaunch` will create block directories with stdout and stderr from each Firework. To troubleshoot any errors or just to see the output you would normally see from an interactive session, use the following commands to search the block directories for your desired fw_id: ```bash diff --git a/docs/README.md b/docs/README.md index 0fa3c2a1f..da09e601c 100644 --- a/docs/README.md +++ b/docs/README.md @@ -100,7 +100,7 @@ Docker mechanics. * [Required development tools](dev-tools.md) -- installation and tips * [Creating the "pyenv" runtime environment](create-pyenv.md) * [Setting up to run FireWorks](../wholecell/fireworks/README.md) -- needed only to run a FireWorks workflow of cell simulations and analysis plots - * [Set up Zookeeper and Kafka](../agent/README.md) -- needed only for multi-scale agents + * [Maintaining the shared Sherlock runtime environment](maintaining_the_sherlock_environment.md) -- how to update the shared virtualenv on Sherlock * **Also** @@ -131,6 +131,7 @@ Docker mechanics. * [Simultaneous cross-evaluation of heterogeneous _E. coli_ datasets via mechanistic simulation](https://science.sciencemag.org/content/369/6502/eaav3751.full), _Science_, 24 July 2020 * [A Whole-Cell Computational Model Predicts Phenotype from Genotype](https://www.cell.com/cell/abstract/S0092-8674(12)00776-3), _Cell_, July 20, 2012 +* TODO: Many more... ## dissertations * _Computational Simulations of Whole Cells: Strategies for Framework Design and Model Parameterization_, John Mason diff --git a/docs/background.md b/docs/background.md index eb81ab28d..c81b1232a 100644 --- a/docs/background.md +++ b/docs/background.md @@ -50,8 +50,8 @@ Scripts used as entry points for executing workflows or performing analysis. * `jenkins/`: scripts to test codebase through continuous integration (CI) * `manual/`: scripts for running portions of workflows interactively * `debug/`: scripts useful for debugging issues like output differences and inspecting `sim_data` - * `cloud/wcm.py`: used to make Docker fireworks workflows to run locally or on Google compute engine - * `fireworks/fw_queue.py`: used to make fireworks workflows to run locally or on Sherlock + * `cloud/wcm.py`: used to build Docker FireWorks workflows to run locally or on Google compute engine + * `fireworks/fw_queue.py`: used to build FireWorks workflows to run locally or on Sherlock * `tools/`: development tools ## Analysis diff --git a/docs/maintaining_the_sherlock_environment.md b/docs/maintaining_the_sherlock_environment.md new file mode 100644 index 000000000..9ec76bbcc --- /dev/null +++ b/docs/maintaining_the_sherlock_environment.md @@ -0,0 +1,141 @@ +# Maintaining the shared Sherlock runtime environment + +_Sherlock_ is Stanford's scientific computing cluster. The Covert lab runs development workflows on Sherlock, also Continuous Integration (CI) builds, including nightly builds and Pull Request (PR) builds. + +For consistent results and debugging, it's important for our local builds, development builds on Sherlock, and the CI builds to run with the same versions of Python, native libraries, and Python libraries (pips). + +When we update to newer versions, it requires skimming release notes for required code changes, working out a compatible set of library versions, and coordinating to update all of our development environments. + +This document describes best practices for updating the versions of Python, native libraries, environment modules, and Python libraries used in the shared Sherlock runtime environment to reduce the chances of breaking things for the CI builds and our development runs. + +(BTW, since Sherlock uses an NFS file server, each directory has a hidden `.snapshot/` subdirectory containing previous snapshots of files. They can be very helpful to recover from goofs.) + + +Also see: +* [Required development tools](dev-tools.md) -- installation and tips +* [Creating the "pyenv" runtime environment](create-pyenv.md) -- build your local Python runtime environment +* [Setting up to run FireWorks](wholecell/fireworks/README.md) -- instructions to run a FireWorks workflow of cell simulations and analysis plots + + +## User profile setup + +Put these lines in your `.bash_profile` on Sherlock: + +```bash +export PI_HOME=$GROUP_HOME +export PI_SCRATCH=$GROUP_SCRATCH + +##### Add group-wide path settings ##### +if [ -f "${PI_HOME}/etc/bash_profile" ]; then + . "${PI_HOME}/etc/bash_profile" +fi + +##### For pyenv ##### +export PYENV_ROOT="${PI_HOME}/pyenv" + +# Environment modules used by wcEcoli +module load git/2.39.1 git-lfs/2.11.0 system parallel +module load wcEcoli/python3 + +# for wcEcoli +export PYTHONPATH="$HOME/wcEcoli" + +if [ -d "${PYENV_ROOT}" ]; then + export PATH="${PYENV_ROOT}/bin:${PATH}" + eval "$(pyenv init -)" + eval "$(pyenv virtualenv-init -)" +fi +``` + +(The `parallel` module is needed only for rarely used shell scripts.) + +The `$PYENV_ROOT` directory holds the lab's shared collection of pyenv virtual environments. + +The above `PYTHONPATH` assumes your wcEcoli repo will be in `$HOME/wcEcoli`, +so it's handy to have an alias like this in your `.bashrc`: + +```bash +alias cdw='cd ~/wcEcoli' +``` + +### `umask 0002` is needed before modifying $GROUP_HOME or $GROUP_SCRATCH + +**NOTE:** Before installing pips in the virtual environments within `${PI_HOME}/pyenv`, or otherwise changing files or directories in `$GROUP_HOME` or `$GROUP_SCRATCH`, be sure that the `umask` command prints `0002`, or `umask -S` prints `u=rwx,g=rwx,o=rx`. This way, new and edited files won't be locked for the rest of the group. + +The shared `"${PI_HOME}/etc/bash_profile"` does set `umask 0002` and aliases `mkdir="mkdir -m u=rwx,g=rwx,o=rx"`. It also adds `${PI_HOME}/modules` to the `MODULEPATH` to make the lab's shared modules available for loading. + +### Install git hooks + +Follow the instructions in wcEcoli's `runscripts/git_hooks/README.md` to set up git hooks in each of your wcEcoli development repos. + +In particular, the `post-checkout` hook will diff the list of pips in the checked-out code (`requirements.txt`) against your installed pips to show if there are pip updates to install into your development environment. See the `pip` commands in `requirements.txt`. + + +## Environment Modules + +The purpose of an _environment module_ is to make specific versions of executables and native libraries available by adding paths to environment variables such as `$PATH`, `$C_INCLUDE_PATH`, and `$LD_LIBRARY_PATH`. The module software can cleanly unload any environment module. + +Example commands: +* `module list` -- list the loaded modules +* `module spider git` -- search for loadable versions of git +* `module load git/2.39.1` -- load a particular git version +* `ml` -- a shortcut for `module list` +* `ml git/2.39.1` -- a shortcut for `module load git/2.39.1` + +After installing a native library or executable, make a module for it in the `${PI_HOME}/modules/` directory. A module can be written in lua, e.g. `openblas/0.3.26.lua`, or in the `Module1.0` text format, e.g. `jenkins/1.596.2`. + + +## Installing native libraries and executables + +**Note:** Always use a **Sherlock compute node** to compile native libraries or install Python libraries so the compiler will detect the right CPU model. + +Look in `$GROUP_HOME/downloads-sherlock2/` and `$GROUP_HOME/installation_notes/` for downloaded software packages and notes on recompiling them as needed to install new packages, new libraries, and new Python releases for the team. + +When adding or updating libraries or executables (such as Python), please add the installation steps to `$GROUP_HOME/installation_notes/`. These range from simple like `mongodb` to not-so-simple like `openblas.txt` and `python-3-11-3.txt`. + +Then add an environment module for the new library or library version. + + +## Installing new Python versions + +**Note:** Always use a compute node to build Python so the compiler will detect the right CPU model. + +Look in `$GROUP_HOME/downloads/` and `$GROUP_HOME/installation_notes/` for downloaded software packages and notes on recompiling them as needed to install new packages, new libraries, and new Python releases for the team. + +We use `pyenv` to install versions of Python. Begin by updating `pyenv` itself: + +```bash +cd $GROUP_HOME/pyenv +git fetch --all && git checkout master && git merge origin/master +``` + +Then list relevant versions of Python that are available, e.g.: + +```bash +pyenv install -l | grep ' 3\.11\.' +``` + +Then follow steps similar to the previously installed version of Python. + +The new version of Python might need updated/added native libraries. For a needed library, use `module spider ` to check if it's already available on Sherlock and just has to be added to the existing module (try `module show wcEcoli/python3`). + + +## Updating `wcEcoli3` or another shared pyenv virtualenv + +When updating a shared pyenv virtualenv, plan to test it out both on your development computer and in a Jenkins PR build. + +Once everything is working on your development computer and in Sherlock CI builds, plan to cut over to the new virtualenv in a short time window so it's less likely to break other builds happening at the same time. + +* On Sherlock, remember to build and install all software on a **compute node** so it'll compile for the correct CPU model. +* Within the Pull Request, temporarily edit the file: + `runscripts/jenkins/setup-environment.sh` + changing the line: + `pyenv local wcEcoli3` + to instead select a staging virtualenv: + `pyenv local wcEcoli3-staging` +* Update this staging virtualenv (`wcEcoli3-staging`) on Sherlock with the updated pip versions. In a case like changing to a new Python version, you'll need to delete and rebuild the virtualenv. Use `pip freeze` to make a complete list of pips with "frozen" versions, merge that into `requirements.txt`, add it to the PR, then run `pip install -r requirements.txt` on Sherlock to update to that list. +* Watch for PR build success. Iterate as needed to fix problems and respond to code review feedback. +* When ready to merge the PR into the `master` branch: + 1. Update Python and libraries in virtualenv `wcEcoli3` to match `wcEcoli3-staging`. + 2. Revert the `pyenv local ...` edit in `setup-environment.sh`. + 3. Merge the PR into `master`. diff --git a/docs/run.md b/docs/run.md index 3a52b5f39..2d08c80f5 100644 --- a/docs/run.md +++ b/docs/run.md @@ -11,38 +11,37 @@ for instructions to run a FireWorks workflow of cell simulations and analysis pl ## Fireworks on Sherlock -See [Setting up to run FireWorks](wholecell/fireworks/README.md) for instructions to run a FireWorks workflow of cell simulations and analysis plots on Sherlock or your local computer. Start with `fw_queue.py`. +See [Setting up to run FireWorks](wholecell/fireworks/README.md) for instructions to run a FireWorks workflow of cell simulations and analysis plots on Sherlock or your local computer. -**NOTE:** If you get this error message connecting to an older MongoDB server -(such as on `mlab.com`, not the one in Google Cloud) with the pymongo library 3.9.0+ -that wcEcoli uses in Python 3: +**NOTE:** If you get this error message from the pymongo library trying to connect to a MongoDB server: > pymongo.errors.OperationFailure: This MongoDB deployment does not support retryable writes. Please add retryWrites=false to your connection string. -the fix is to add these lines to your `my_launchpad.yaml` file: +the fix is to add the query parameter `retryWrites=true` to the `host: mongodb+srv://...` URL in your `my_launchpad.yaml` file or add these lines to `my_launchpad.yaml`: -``` +```yaml mongoclient_kwargs: retryWrites: false ``` ## Using the Manual Runscripts -[TODO] Rewrite this. Meanwhile, see the top level [README](../README.md). +Here's a summary. See the top level [README](../README.md) for more info. You can accomplish largely the same thing that running via Fireworks does by running: 1. `runParca.py` -- creates the `kb/*` sim data files for the control case 2. `runSim.py` -- creates the modified modified sim data files for requested variants and runs the sims -3. `analysisParca.py`, `analysisCohort.py`, `analysisMultigen.py`, `analysisSingle.py`, `analysisVariant.py` -- generates the output plots; to generate all the plots, you must run some of these multiple times +3. `analysisParca.py`, `analysisCohort.py`, `analysisMultigen.py`, `analysisSingle.py`, `analysisVariant.py`, `analysisComparison.py` -- generate output plots When using the manual runscripts: -* It runs directly without FireWorks or MongoDB, but it doesn't distribute multiple sims and analysis plots to run in parallel across multiple computers. * You can run it in a debugger. -* You can run just the parts you want and rerun them as needed. The manual scripts don't automate dependency management of data files flowing between steps such as simulation outputs as analysis plot inputs. It's on you to rerun code if things change, runSim before analysis. (Some analysis scripts get confused if the sim runs are more varied than expected. See [https://github.com/CovertLab/wcEcoli/issues/199](#199).) -* The scripts have command line help and are more rigorous at parsing args than `fw_queue.py` is at reading environment variables. Argparse provides helpful features like the ability to use any unambiguous option name prefix so you can use `--var` in place of `--variant_index`. -* The scripts do smart defaulting. runParca defaults to creating the sim dir `out/manual/` rather than a timestamped directory name. The others default to finding the most likely sim dir, i.e. the latest timestamped subdirectory of `out/` or else the alphabetically first subdirectory of `out/`. You can pass in a directory name that's absolute, or relative to `wcEcoli/`, or relative to `wcEcoli/out/`. +* It runs directly without FireWorks or MongoDB, but it doesn't distribute multiple sims and analysis plots across multiple computers. +* You can run just the parts you want and rerun them as needed. +* It doesn't do automate dependency management such as simulation outputs as analysis plot inputs. It's on you to rerun code if things change. (Some analysis scripts get confused if the sim runs are more varied than expected. See [https://github.com/CovertLab/wcEcoli/issues/199](#199).) +* The scripts have command line help and are more rigorous at arg parsing than `fw_queue.py`. Argparse provides helpful features like the ability to use any unambiguous option name prefix so, e.g. you can use `--var` as short for `--variant_index`. +* The manual runscripts do smart defaulting. runParca defaults to creating the sim dir `out/manual/` rather than a timestamped directory name. The others default to finding the most likely sim dir, i.e. the latest timestamped subdirectory of `out/` or else the alphabetically first subdirectory of `out/`. You can pass in a directory name that's absolute, or relative to `wcEcoli/`, or relative to `wcEcoli/out/`. * Analysis scripts can accept a parameter like `--variant_index 1` to look for a subdirectory like `condition_000001/`. * You can run a single analysis script via @@ -51,4 +50,9 @@ When using the manual runscripts: or run one or more of them like this: runscripts/manual/analysisCohort.py growthDynamics transcriptFrequency -* The manual scripts don't compress the output files. +* Manual analysis scripts accept range arguments like + ``` + python runscripts/manual/analysisVariant.py --variant-path-range START_VARIANT END_VARIANT --seed-path-range START_SEED END_SEED --generation-path-range START_GENERATION END_GENERATION + ``` + where the all-caps words are placeholders for your chosen values. +* The manual scripts don't compress the output files into tar files. diff --git a/wholecell/fireworks/README.md b/wholecell/fireworks/README.md index 55ce323e1..a4303c0ae 100644 --- a/wholecell/fireworks/README.md +++ b/wholecell/fireworks/README.md @@ -1,4 +1,6 @@ -# One-time setup +# Setting up to run FireWorks + +## One-time setup To use FireWorks, your computer (to run the `lpad` command) and the Firetask worker nodes need to access a MongoDB @@ -40,32 +42,56 @@ it also needs a queue-adapter file, `my_qadapter.yaml`. * **Atlas MongoDB cluster:** See the [MAT project forum](https://matsci.org/t/heres-how-to-connect-to-atlas-mongodb/4816) - on how to use the `lpad init -u` command to create `my_launchpad.yaml`. + on how to use the `lpad init -u` command to create a `my_launchpad.yaml` + looking something like this (after the `host` setting, are the rest + defaults that could be omitted?): + + ```yaml + authsource: admin + host: mongodb+srv://:@/wcEcoli?retryWrites=true&w=majority + logdir: null + mongoclient_kwargs: {} + name: null + password: null + port: null + ssl: false + ssl_ca_certs: null + ssl_certfile: null + ssl_keyfile: null + ssl_pem_passphrase: null + strm_lvl: INFO + uri_mode: true + user_indices: [] + username: null + wf_user_indices: [] + ``` - * **Google Cloud MongoDB database:** Run the script - `runscripts/cloud/mongo-ssh.sh` to open an ssh tunnel whenever you want to - access the server. (You can leave it running in one terminal tab then `^C` - it when you're done, or run `runscripts/cloud/mongo-ssh.sh bg` to run it in a - background process and kill it when you're done.) + (The tool `wholecell/fireworks/initialize.py` could become useful again if updated.) - Construct `my_launchpad.yaml` like this: + * **Google Cloud MongoDB database:** Run the script + `runscripts/cloud/mongo-ssh.sh` to open an ssh tunnel whenever you want to + access the server. (You can leave it running in one terminal tab then `^C` + it when you're done, or run `runscripts/cloud/mongo-ssh.sh bg` to run it in a + background process and kill it when you're done.) - ``` - host: localhost - port: 27017 - name: - username: null - password: null - ``` + Construct `my_launchpad.yaml` like this: + + ```yaml + host: localhost + port: 27017 + name: + username: null + password: null + ``` - These values ask FireWorks to connect to `localhost:27017`, which the - `mongo-ssh.sh` tunnel will forward to port `27017` on the Google Compute - Engine MongoDB server. + These values ask FireWorks to connect to `localhost:27017`, which the + `mongo-ssh.sh` tunnel will forward to port `27017` on the Google Compute + Engine MongoDB server. - `name` will be your database name. + `name` will be your database name. - We're not using user - authentication on this server since the ssh tunnel already requires Google login. + We're not using user + authentication on this server since the ssh tunnel already requires Google login. 1. Run From ddd00253bcc907b7d831bb8b644b56df27718c29 Mon Sep 17 00:00:00 2001 From: Riley Juenemann <39416387+rjuenemann@users.noreply.github.com> Date: Wed, 13 Mar 2024 12:33:32 -0700 Subject: [PATCH 14/34] EcoCyc 28.0 (#1445) * update to ecocyc 28.1 * remove new hybrid TUs * handle new compartments and too short transcription units * remove debugging statement * updated ecocyc files * update ecocyc files * unremove corrected metabolic reactions * remove corrected compartment --- .../ecoli/dataclasses/getter_functions.py | 1 - .../ecoli/flat/complexation_reactions.tsv | 16 +- reconstruction/ecoli/flat/dna_sites.tsv | 4 +- .../ecoli/flat/equilibrium_reactions.tsv | 4 +- reconstruction/ecoli/flat/genes.tsv | 6 +- .../ecoli/flat/metabolic_reactions.tsv | 130 ++- .../flat/metabolic_reactions_removed.tsv | 1 - reconstruction/ecoli/flat/metabolites.tsv | 153 +-- reconstruction/ecoli/flat/proteins.tsv | 180 ++-- reconstruction/ecoli/flat/rnas.tsv | 4 +- .../ecoli/flat/transcription_units.tsv | 924 +++++++++--------- .../flat/transcription_units_removed.tsv | 9 + .../ecoli/flat/trna_charging_reactions.tsv | 4 +- 13 files changed, 756 insertions(+), 680 deletions(-) diff --git a/reconstruction/ecoli/dataclasses/getter_functions.py b/reconstruction/ecoli/dataclasses/getter_functions.py index 997362154..f1a596b1c 100755 --- a/reconstruction/ecoli/dataclasses/getter_functions.py +++ b/reconstruction/ecoli/dataclasses/getter_functions.py @@ -27,7 +27,6 @@ 'CCO-CE-BAC': 'm', 'CCO-BAC-NUCLEOID': 'c', 'CCO-RIBOSOME': 'c', - 'CCO-PEROXISOME': 'c', } IGNORED_DNA_SITE_TYPES = { diff --git a/reconstruction/ecoli/flat/complexation_reactions.tsv b/reconstruction/ecoli/flat/complexation_reactions.tsv index af2d4ac79..9c42ed886 100644 --- a/reconstruction/ecoli/flat/complexation_reactions.tsv +++ b/reconstruction/ecoli/flat/complexation_reactions.tsv @@ -1,7 +1,7 @@ # Organism: Escherichia coli K-12 substr. MG1655 # Database: EcoCyc -# Version: 28.0 -# Date and time generated: October 30, 2023, 10:06:12 +# Version: 28.1 +# Date and time generated: March 7, 2024, 13:55:38 "id" "stoichiometry" "common_name" "cofactors" "1-PFK_RXN" {"1-PFK": 1, "1-PFK-MONOMER": -2} null {"MG+2": 1} "2OXOGLUTARATEDEH-CPLX_RXN" {"2OXOGLUTARATEDEH-CPLX": 1, "E1O": -1, "E2O": -1, "E3-CPLX": -1} "2-oxoglutarate dehydrogenase complex" {"LIPOIC-ACID": 1, "THIAMINE-PYROPHOSPHATE": 2, "FAD": 3, "MG+2": 2} @@ -191,8 +191,14 @@ "CPLX0-10342_RXN" {"CPLX0-10342": 1, "G7313-MONOMER": -2, "CPLX0-3761": -1} "Hda-β-clamp complex" {} "CPLX0-10367_RXN" {"CPLX0-10367": 1, "EG10778-MONOMER": null, "EG10777-MONOMER": null, "EG10776-MONOMER": null} "PspABC complex" {} "CPLX0-10380_RXN" {"CPLX0-10380": 1, "G6487-MONOMER": -2} null {"CPD-8123": 1} +"CPLX0-10815_RXN" {"CPLX0-10815": 1, "EG12007-MONOMER": -2} "high-affinity pyruvate receptor" {} +"CPLX0-10852_RXN" {"CPLX0-10852": 1, "G6876-MONOMER": null, "G6875-MONOMER": null, "G6874-MONOMER": null, "G6873-MONOMER": null, "G6872-MONOMER": null, "G6871-MONOMER": null} "SoxR [2Fe-2S] reducing system, Rsx complex" {} +"CPLX0-10853_RXN" {"CPLX0-10853": 1, "EG12073-MONOMER": null, "G7347-MONOMER": null, "CPLX0-10852": null} "SoxR [2Fe-2S] reducing system" {} "CPLX0-1101_RXN" {"CPLX0-1101": 1, "EG10996-MONOMER": -3} "tRNA-guanine transglycosylase" {"ZN+2": 1} +"CPLX0-11183_RXN" {"CPLX0-11183": 1, "EG10967-MONOMER": -2} null {} "CPLX0-1121_RXN" {"CPLX0-1121": 1, "G7845-MONOMER": -2} "23S rRNA 2'-O-ribose G2251 methyltransferase" {} +"CPLX0-11240_RXN" {"CPLX0-11240": 1, "EG11192-MONOMER": -6} null {} +"CPLX0-11245_RXN" {"CPLX0-11245": 1, "EG12167-MONOMER": -2} null {} "CPLX0-1141_RXN" {"CPLX0-1141": 1, "EG10941-MONOMER": -10} "selenocysteine synthase" {"PYRIDOXAL_PHOSPHATE": 1} "CPLX0-1142_RXN" {"CPLX0-1142": 1, "G7237-MONOMER": -2} "formyl-CoA transferase" {} "CPLX0-1161_RXN" {"CPLX0-1161": 1, "EG11881-MONOMER": -6} "HslU hexamer" {} @@ -412,7 +418,7 @@ "CPLX0-7615_RXN" {"CPLX0-7615": 1, "KDGALDOL-MONOMER": -6} null {"MG+2": 1} "CPLX0-7616_RXN" {"CPLX0-7616": 1, "G6278-MONOMER": -4} "tartronate semialdehyde reductase 2" {} "CPLX0-7617_RXN" {"CPLX0-7617": 1, "EG12332-MONOMER": -2} "iron-sulfur cluster insertion protein ErpA" {} -"CPLX0-761_RXN" {"CPLX0-761": 1, "G7485-MONOMER": null, "G7486-MONOMER": null, "G7487-MONOMER": null} "putative xanthine dehydrogenase" {"CPD0-1882": 1} +"CPLX0-761_RXN" {"CPLX0-761": 1, "G7485-MONOMER": null, "G7486-MONOMER": null, "G7487-MONOMER": null} "putative xanthine dehydrogenase" {"CPD-23445": 1} "CPLX0-7622_RXN" {"CPLX0-7622": 1, "LSERINEDEAM3-MONOMER": -2} "L-serine deaminase III" {"CPD-7": 1} "CPLX0-7623_RXN" {"CPLX0-7623": 1, "G6606-MONOMER": -2} "putative two-component system connector protein AriR" {} "CPLX0-7624_RXN" {"CPLX0-7624": 1, "EG10955-MONOMER": -2, "G7629-MONOMER": -4} "YhaV-PrlF toxin-antitoxin complex" {} @@ -515,7 +521,7 @@ "CPLX0-7797_RXN" {"CPLX0-7797": 1, "PD00197": -2} "DNA-binding transcriptional dual regulator FNR" {} "CPLX0-7801_RXN" {"CPLX0-7801": 1, "G7271-MONOMER": -3} "predicted structural protein, ethanolamine utilization microcompartment" {} "CPLX0-7802_RXN" {"CPLX0-7802": 1, "EG11643-MONOMER": -2} "diguanylate cyclase DgcZ" {} -"CPLX0-7805_RXN" {"CPLX0-7805": 1, "G6157-MONOMER": -1, "G6156-MONOMER": -1, "G6155-MONOMER": -1} null {"CPD-7": 1, "CPD-6": 1, "FAD": 1, "CPD0-1882": 1} +"CPLX0-7805_RXN" {"CPLX0-7805": 1, "G6157-MONOMER": -1, "G6156-MONOMER": -1, "G6155-MONOMER": -1} null {"CPD-7": 1, "CPD-6": 1, "FAD": 1, "CPD-23445": 1} "CPLX0-7806_RXN" {"CPLX0-7806": 1, "G7194-MONOMER": -2} "disulfide bond oxidoreductase YfcG" {} "CPLX0-7807_RXN" {"CPLX0-7807": 1, "EG11952-MONOMER": null, "YJCQ-MONOMER": null, "EG11954-MONOMER": null} "putative multidrug efflux pump MdtNOP" {} "CPLX0-7808_RXN" {"CPLX0-7808": 1, "COPROGENOXI-MONOMER": -2} null {"MN+2": 1} @@ -884,7 +890,7 @@ "FABZ-CPLX_RXN" {"FABZ-CPLX": 1, "FABZ-MONOMER": -6} "3-hydroxy-acyl-[acyl-carrier-protein] dehydratase" {} "FAO-CPLX_RXN" {"FAO-CPLX": 1, "FADB-MONOMER": -2, "FADA-MONOMER": -2} "aerobic fatty acid oxidation complex" {} "FHLMULTI-CPLX_RXN" {"FHLMULTI-CPLX": 1, "FORMATEDEHYDROGH-MONOMER": -1, "HYDROG3-CPLX": -1} "formate hydrogenlyase complex" {"CPD-15873": 1, "CPD-7": 1} -"FLAGELLAR-MOTOR-COMPLEX_RXN" {"FLAGELLAR-MOTOR-COMPLEX": 1, "FLGH-FLAGELLAR-L-RING": null, "MOTA-FLAGELLAR-MOTOR-STATOR-PROTEIN": null, "MOTB-FLAGELLAR-MOTOR-STATOR-PROTEIN": null, "FLGB-FLAGELLAR-MOTOR-ROD-PROTEIN": null, "FLGC-FLAGELLAR-MOTOR-ROD-PROTEIN": null, "FLGF-FLAGELLAR-MOTOR-ROD-PROTEIN": null, "FLGG-FLAGELLAR-MOTOR-ROD-PROTEIN": null, "FLGI-FLAGELLAR-P-RING": null, "FLIF-FLAGELLAR-MS-RING": null, "FLIG-FLAGELLAR-SWITCH-PROTEIN": null, "FLIM-FLAGELLAR-C-RING-SWITCH": null, "FLIN-FLAGELLAR-C-RING-SWITCH": null} "flagellar basal body" {} +"FLAGELLAR-MOTOR-COMPLEX_RXN" {"FLAGELLAR-MOTOR-COMPLEX": 1, "FLGH-FLAGELLAR-L-RING": null, "MOTA-FLAGELLAR-MOTOR-STATOR-PROTEIN": null, "MOTB-FLAGELLAR-MOTOR-STATOR-PROTEIN": null, "FLGB-FLAGELLAR-MOTOR-ROD-PROTEIN": null, "FLGC-FLAGELLAR-MOTOR-ROD-PROTEIN": null, "FLGF-FLAGELLAR-MOTOR-ROD-PROTEIN": null, "FLGG-FLAGELLAR-MOTOR-ROD-PROTEIN": null, "FLGI-FLAGELLAR-P-RING": null, "FLIF-FLAGELLAR-MS-RING": null, "FLIG-FLAGELLAR-SWITCH-PROTEIN": null, "FLIM-FLAGELLAR-C-RING-SWITCH": null, "FLIN-FLAGELLAR-C-RING-SWITCH": null, "EG10322-MONOMER": null, "EG11346-MONOMER": null} "flagellar basal body" {} "FOLD-CPLX_RXN" {"FOLD-CPLX": 1, "FOLD-MONOMER": -2} "bifunctional methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase" {} "FOLE-CPLX_RXN" {"FOLE-CPLX": 1, "GTP-CYCLOHYDRO-I-MONOMER": -10} "GTP cyclohydrolase 1" {"ZN+2": 1} "FOLXTET-CPLX_RXN" {"FOLXTET-CPLX": 1, "H2NTPEPIM-MONOMER": -8} "dihydroneopterin triphosphate 2'-epimerase" {"MG+2": 1} diff --git a/reconstruction/ecoli/flat/dna_sites.tsv b/reconstruction/ecoli/flat/dna_sites.tsv index f13c94f9d..b8cfb7b90 100644 --- a/reconstruction/ecoli/flat/dna_sites.tsv +++ b/reconstruction/ecoli/flat/dna_sites.tsv @@ -1,7 +1,7 @@ # Organism: Escherichia coli K-12 substr. MG1655 # Database: EcoCyc -# Version: 28.0 -# Date and time generated: October 30, 2023, 10:06:14 +# Version: 28.1 +# Date and time generated: March 7, 2024, 13:55:40 "id" "common_name" "synonyms" "type" "left_end_pos" "right_end_pos" "direction" "BS-7046" null [] "dna-binding-site" 1825765 1825784 null "BS-7048" null [] "dna-binding-site" 3169748 3169760 null diff --git a/reconstruction/ecoli/flat/equilibrium_reactions.tsv b/reconstruction/ecoli/flat/equilibrium_reactions.tsv index a2111198f..2fd6b8559 100644 --- a/reconstruction/ecoli/flat/equilibrium_reactions.tsv +++ b/reconstruction/ecoli/flat/equilibrium_reactions.tsv @@ -1,7 +1,7 @@ # Organism: Escherichia coli K-12 substr. MG1655 # Database: EcoCyc -# Version: 28.0 -# Date and time generated: October 30, 2023, 10:06:15 +# Version: 28.1 +# Date and time generated: March 7, 2024, 13:55:41 "id" "stoichiometry" "common_name" "CPLX-123_RXN" {"CPLX-123": 1, "PC00033": null, "HYPOXANTHINE": null} "DNA-binding transcriptional repressor PurR-hypoxanthine" "CPLX-124_CPD0-1112_RXN" {"CPLX-124": 1, "CPD0-1112": null, "PC00086": null} "RhaS-L-rhamnose DNA-binding transcriptional activator" diff --git a/reconstruction/ecoli/flat/genes.tsv b/reconstruction/ecoli/flat/genes.tsv index d060e05df..e0334fe5a 100644 --- a/reconstruction/ecoli/flat/genes.tsv +++ b/reconstruction/ecoli/flat/genes.tsv @@ -1,7 +1,7 @@ # Organism: Escherichia coli K-12 substr. MG1655 # Database: EcoCyc -# Version: 28.0 -# Date and time generated: October 30, 2023, 10:06:18 +# Version: 28.1 +# Date and time generated: March 7, 2024, 13:55:45 "id" "symbol" "synonyms" "left_end_pos" "right_end_pos" "direction" "rna_ids" "EG10001" "alr" ["alr", "alr5", "b4053", "ECK4045"] 4265782 4266861 "+" ["EG10001_RNA"] "EG10002" "modB" ["modB", "chlJ", "tslJ", "b0764", "ECK0753"] 795862 796551 "+" ["EG10002_RNA"] @@ -3946,7 +3946,7 @@ "G7061" "zinT" ["zinT", "yodA", "b1973", "ECK1969"] 2041375 2042025 "+" ["G7061_RNA"] "G7062" "yodB" ["yodB", "b1974", "ECK1970"] 2042368 2042898 "+" ["G7062_RNA"] "G7063" "mtfA" ["mtfA", "yeeI", "b1976", "ECK1972"] 2043651 2044448 "+" ["G7063_RNA"] -"G7064" "yeeJ" ["yeeJ", "b1978", "ECK1974"] 2044938 2052014 "+" ["G7064_RNA"] +"G7064" "yeeJ" ["yeeJ", "b1978", "ECK1974"] 2044995 2052014 "+" ["G7064_RNA"] "G7066" "yeeL" ["yeeL", "yeeK", "b1980", "b1979", "b4497", "ECK1975"] 2052276 2053328 "-" ["G7066_RNA"] "G7067" "shiA" ["shiA", "yeeM", "b1981", "ECK1976"] 2053643 2054959 "+" ["G7067_RNA"] "G7068" "yeeN" ["yeeN", "b1983", "ECK1978"] 2056858 2057574 "+" ["G7068_RNA"] diff --git a/reconstruction/ecoli/flat/metabolic_reactions.tsv b/reconstruction/ecoli/flat/metabolic_reactions.tsv index a0da06bbb..ca2f20f77 100644 --- a/reconstruction/ecoli/flat/metabolic_reactions.tsv +++ b/reconstruction/ecoli/flat/metabolic_reactions.tsv @@ -1,7 +1,7 @@ # Organism: Escherichia coli K-12 substr. MG1655 # Database: EcoCyc -# Version: 28.0 -# Date and time generated: October 30, 2023, 10:06:41 +# Version: 28.1 +# Date and time generated: March 7, 2024, 13:56:09 "id" "stoichiometry" "direction" "catalyzed_by" "1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN" {"ACYL-SN-GLYCEROL-3P[CCO-CYTOSOL]": -1, "ACYL-ACP[CCO-CYTOSOL]": -1, "L-PHOSPHATIDATE[CCO-CYTOSOL]": 1, "ACP[CCO-CYTOSOL]": 1} "L2R" ["1-ACYLGLYCEROL-3-P-ACYLTRANSFER-MONOMER"] "1.1.1.127-RXN" {"2-DEHYDRO-3-DEOXY-D-GLUCONATE[CCO-CYTOSOL]": -1, "NAD[CCO-CYTOSOL]": -1, "CPD-343[CCO-CYTOSOL]": 1, "NADH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "BOTH" ["KDUD-MONOMER"] @@ -69,7 +69,7 @@ "2-OCTAPRENYL-METHOXY-BENZOQ-METH-RXN" {"OCTAPRENYL-METHOXY-BENZOQUINONE[CCO-CYTOSOL]": -1, "S-ADENOSYLMETHIONINE[CCO-CYTOSOL]": -1, "OCTAPRENYL-METHYL-METHOXY-BENZQ[CCO-CYTOSOL]": 1, "ADENOSYL-HOMO-CYS[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["2-OCTAPRENYL-METHOXY-BENZOQ-METH-MONOMER"] "2-OCTAPRENYLPHENOL-HYDROX-RXN" {"2-OCTAPRENYLPHENOL[CCO-CYTOSOL]": -1, "NADPH[CCO-CYTOSOL]": -1, "OXYGEN-MOLECULE[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "2-OCTAPRENYL-6-HYDROXYPHENOL[CCO-CYTOSOL]": 1, "NADP[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["EG11333-MONOMER"] "2-OXOPENT-4-ENOATE-HYDRATASE-RXN" {"4-HYDROXY-2-KETOVALERATE[CCO-CYTOSOL]": -1, "CPD-14447[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "R2L" ["CPLX0-7951"] -"2.1.1.34-RXN" {"tRNA-guanosine18[CCO-CYTOSOL]": -1, "S-ADENOSYLMETHIONINE[CCO-CYTOSOL]": -1, "2-O-Methylguanosine18[CCO-CYTOSOL]": 1, "ADENOSYL-HOMO-CYS[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["EG10967-MONOMER"] +"2.1.1.34-RXN" {"tRNA-guanosine18[CCO-CYTOSOL]": -1, "S-ADENOSYLMETHIONINE[CCO-CYTOSOL]": -1, "2-O-Methylguanosine18[CCO-CYTOSOL]": 1, "ADENOSYL-HOMO-CYS[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-11183"] "2.1.1.63-RXN" {"PROT-CYS[CCO-CYTOSOL]": -1, "DNA-6-O-Methyl-Guanines[CCO-CYTOSOL]": -1, "Protein-S-methyl-L-cysteine[CCO-CYTOSOL]": 1, "DNA-Guanines[CCO-CYTOSOL]": 1} "L2R" ["PD00230", "EG10668-MONOMER"] "2.1.1.72-RXN" {"DNA-Adenines[CCO-CYTOSOL]": -1, "S-ADENOSYLMETHIONINE[CCO-CYTOSOL]": -1, "ADENOSYL-HOMO-CYS[CCO-CYTOSOL]": 1, "DNA-Containing-N6-Methyladenine[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["EG11498-MONOMER", "EG10204-MONOMER"] "2.1.1.77-RXN" {"PROTEIN-L-BETA-ISOASPARTATES[CCO-CYTOSOL]": -1, "S-ADENOSYLMETHIONINE[CCO-CYTOSOL]": -1, "ADENOSYL-HOMO-CYS[CCO-CYTOSOL]": 1, "PROTEIN-L-BETA-ISOSPARTATE-METHYL-ESTERS[CCO-CYTOSOL]": 1} "L2R" ["EG10689-MONOMER"] @@ -146,9 +146,9 @@ "3.1.4.14-RXN" {"All-holo-ACPs[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "All-apo-ACPs[CCO-CYTOSOL]": 1, "PANTETHEINE-P[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["EG11095-MONOMER"] "3.1.4.14-RXN-Holo-AsbD-Proteins/WATER//Apo-AsbD-Proteins/PANTETHEINE-P/PROTON.65." {"Holo-AsbD-Proteins[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "Apo-AsbD-Proteins[CCO-CYTOSOL]": 1, "PANTETHEINE-P[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["EG11095-MONOMER"] "3.2.1.17-RXN" {"Peptidoglycans[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "Peptide-Peptidoglycan-NAcMur[CCO-CYTOSOL]": 1, "Peptidoglycan-GlcNAC[CCO-CYTOSOL]": 1} "L2R" ["G6310-MONOMER"] -"3.2.1.21-RXN" {"Beta-D-glucosides[CCO-PERI-BAC]": -1, "WATER[CCO-PERI-BAC]": -1, "Non-Glucosylated-Glucose-Acceptors[CCO-PERI-BAC]": 1, "Glucopyranose[CCO-PERI-BAC]": 1} "L2R" ["EG12013-MONOMER"] -"3.2.1.21-RXN-Beta-D-glucosides/WATER//Non-Glucosylated-Glucose-Acceptors/ALPHA-GLUCOSE.74." {"Beta-D-glucosides[CCO-PERI-BAC]": -1, "WATER[CCO-PERI-BAC]": -1, "Non-Glucosylated-Glucose-Acceptors[CCO-PERI-BAC]": 1, "ALPHA-GLUCOSE[CCO-PERI-BAC]": 1} "L2R" ["EG12013-MONOMER"] -"3.2.1.21-RXN-Beta-D-glucosides/WATER//Non-Glucosylated-Glucose-Acceptors/GLC.64." {"Beta-D-glucosides[CCO-PERI-BAC]": -1, "WATER[CCO-PERI-BAC]": -1, "Non-Glucosylated-Glucose-Acceptors[CCO-PERI-BAC]": 1, "GLC[CCO-PERI-BAC]": 1} "L2R" ["EG12013-MONOMER"] +"3.2.1.21-RXN" {"Beta-D-glucosides[CCO-PERI-BAC]": -1, "WATER[CCO-PERI-BAC]": -1, "Non-Glucosylated-Glucose-Acceptors[CCO-PERI-BAC]": 1, "Glucopyranose[CCO-PERI-BAC]": 1} "L2R" [] +"3.2.1.21-RXN-Beta-D-glucosides/WATER//Non-Glucosylated-Glucose-Acceptors/ALPHA-GLUCOSE.74." {"Beta-D-glucosides[CCO-PERI-BAC]": -1, "WATER[CCO-PERI-BAC]": -1, "Non-Glucosylated-Glucose-Acceptors[CCO-PERI-BAC]": 1, "ALPHA-GLUCOSE[CCO-PERI-BAC]": 1} "L2R" [] +"3.2.1.21-RXN-Beta-D-glucosides/WATER//Non-Glucosylated-Glucose-Acceptors/GLC.64." {"Beta-D-glucosides[CCO-PERI-BAC]": -1, "WATER[CCO-PERI-BAC]": -1, "Non-Glucosylated-Glucose-Acceptors[CCO-PERI-BAC]": 1, "GLC[CCO-PERI-BAC]": 1} "L2R" [] "3.2.1.52-RXN" {"N-Acetyl-beta-D-Hexosaminides[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "N-acetyl-beta-D-hexosamines[CCO-CYTOSOL]": 1, "Alcohols[CCO-CYTOSOL]": 1} "L2R" [] "3.2.2.10-RXN-CMP/WATER//CPD-15318/CYTOSINE.30." {"CMP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD-15318[CCO-CYTOSOL]": 1, "CYTOSINE[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8262"] "3.2.2.10-RXN-CMP/WATER//CPD-15895/CYTOSINE.30." {"CMP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD-15895[CCO-CYTOSOL]": 1, "CYTOSINE[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8262"] @@ -640,12 +640,18 @@ "BETA-GLUCURONID-RXN" {"Beta-D-Glucuronides[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "D-Glucopyranuronate[CCO-CYTOSOL]": 1, "Alcohols[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-7662"] "BETA-LACTAMASE-RXN[CCO-PERI-BAC]-Beta-Lactams/WATER//CPD-8550/PROTON.50." {"Beta-Lactams[CCO-PERI-BAC]": -1, "WATER[CCO-PERI-BAC]": -1, "CPD-8550[CCO-PERI-BAC]": 1, "PROTON[CCO-PERI-BAC]": 1} "L2R" ["RPOA-MONOMER"] "BETA-PHOSPHOGLUCOMUTASE-RXN" {"CPD-448[CCO-CYTOSOL]": -1, "GLC-6-P[CCO-CYTOSOL]": 1} "BOTH" ["G6655-MONOMER"] -"BETAGALACTOSID-RXN" {"CPD-15972[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GALACTOSE[CCO-CYTOSOL]": 1, "Glucopyranose[CCO-CYTOSOL]": 1} "L2R" ["BETAGALACTOSID-CPLX"] -"BETAGALACTOSID-RXN-Alpha-lactose/WATER//GALACTOSE/ALPHA-GLUCOSE.45." {"Alpha-lactose[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GALACTOSE[CCO-CYTOSOL]": 1, "ALPHA-GLUCOSE[CCO-CYTOSOL]": 1} "L2R" ["BETAGALACTOSID-CPLX"] -"BETAGALACTOSID-RXN-Alpha-lactose/WATER//GALACTOSE/GLC.35." {"Alpha-lactose[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GALACTOSE[CCO-CYTOSOL]": 1, "GLC[CCO-CYTOSOL]": 1} "L2R" ["BETAGALACTOSID-CPLX"] -"BETAGALACTOSID-RXN-Alpha-lactose/WATER//GALACTOSE/Glucopyranose.45." {"Alpha-lactose[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GALACTOSE[CCO-CYTOSOL]": 1, "Glucopyranose[CCO-CYTOSOL]": 1} "L2R" ["BETAGALACTOSID-CPLX"] -"BETAGALACTOSID-RXN-CPD-15972/WATER//GALACTOSE/ALPHA-GLUCOSE.41." {"CPD-15972[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GALACTOSE[CCO-CYTOSOL]": 1, "ALPHA-GLUCOSE[CCO-CYTOSOL]": 1} "L2R" ["BETAGALACTOSID-CPLX"] -"BETAGALACTOSID-RXN-CPD-15972/WATER//GALACTOSE/GLC.31." {"CPD-15972[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GALACTOSE[CCO-CYTOSOL]": 1, "GLC[CCO-CYTOSOL]": 1} "L2R" ["BETAGALACTOSID-CPLX"] +"BETAGALACTOSID-RXN[CCI-PERI-BAC-GN]-Alpha-lactose/WATER//GALACTOSE/ALPHA-GLUCOSE.62." {"Alpha-lactose[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "GALACTOSE[CCI-PERI-BAC-GN]": 1, "ALPHA-GLUCOSE[CCI-PERI-BAC-GN]": 1} "L2R" ["EG12013-MONOMER"] +"BETAGALACTOSID-RXN[CCI-PERI-BAC-GN]-Alpha-lactose/WATER//GALACTOSE/GLC.52." {"Alpha-lactose[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "GALACTOSE[CCI-PERI-BAC-GN]": 1, "GLC[CCI-PERI-BAC-GN]": 1} "L2R" ["EG12013-MONOMER"] +"BETAGALACTOSID-RXN[CCI-PERI-BAC-GN]-Alpha-lactose/WATER//GALACTOSE/Glucopyranose.62." {"Alpha-lactose[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "GALACTOSE[CCI-PERI-BAC-GN]": 1, "Glucopyranose[CCI-PERI-BAC-GN]": 1} "L2R" ["EG12013-MONOMER"] +"BETAGALACTOSID-RXN[CCI-PERI-BAC-GN]-CPD-15972/WATER//GALACTOSE/ALPHA-GLUCOSE.58." {"CPD-15972[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "GALACTOSE[CCI-PERI-BAC-GN]": 1, "ALPHA-GLUCOSE[CCI-PERI-BAC-GN]": 1} "L2R" ["EG12013-MONOMER"] +"BETAGALACTOSID-RXN[CCI-PERI-BAC-GN]-CPD-15972/WATER//GALACTOSE/GLC.48." {"CPD-15972[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "GALACTOSE[CCI-PERI-BAC-GN]": 1, "GLC[CCI-PERI-BAC-GN]": 1} "L2R" ["EG12013-MONOMER"] +"BETAGALACTOSID-RXN[CCI-PERI-BAC-GN]-CPD-15972/WATER//GALACTOSE/Glucopyranose.58." {"CPD-15972[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "GALACTOSE[CCI-PERI-BAC-GN]": 1, "Glucopyranose[CCI-PERI-BAC-GN]": 1} "L2R" ["EG12013-MONOMER"] +"BETAGALACTOSID-RXN[CCO-CYTOSOL]-Alpha-lactose/WATER//GALACTOSE/ALPHA-GLUCOSE.58." {"Alpha-lactose[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GALACTOSE[CCO-CYTOSOL]": 1, "ALPHA-GLUCOSE[CCO-CYTOSOL]": 1} "L2R" ["BETAGALACTOSID-CPLX"] +"BETAGALACTOSID-RXN[CCO-CYTOSOL]-Alpha-lactose/WATER//GALACTOSE/GLC.48." {"Alpha-lactose[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GALACTOSE[CCO-CYTOSOL]": 1, "GLC[CCO-CYTOSOL]": 1} "L2R" ["BETAGALACTOSID-CPLX"] +"BETAGALACTOSID-RXN[CCO-CYTOSOL]-Alpha-lactose/WATER//GALACTOSE/Glucopyranose.58." {"Alpha-lactose[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GALACTOSE[CCO-CYTOSOL]": 1, "Glucopyranose[CCO-CYTOSOL]": 1} "L2R" ["BETAGALACTOSID-CPLX"] +"BETAGALACTOSID-RXN[CCO-CYTOSOL]-CPD-15972/WATER//GALACTOSE/ALPHA-GLUCOSE.54." {"CPD-15972[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GALACTOSE[CCO-CYTOSOL]": 1, "ALPHA-GLUCOSE[CCO-CYTOSOL]": 1} "L2R" ["BETAGALACTOSID-CPLX"] +"BETAGALACTOSID-RXN[CCO-CYTOSOL]-CPD-15972/WATER//GALACTOSE/GLC.44." {"CPD-15972[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GALACTOSE[CCO-CYTOSOL]": 1, "GLC[CCO-CYTOSOL]": 1} "L2R" ["BETAGALACTOSID-CPLX"] +"BETAGALACTOSID-RXN[CCO-CYTOSOL]-CPD-15972/WATER//GALACTOSE/Glucopyranose.54." {"CPD-15972[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GALACTOSE[CCO-CYTOSOL]": 1, "Glucopyranose[CCO-CYTOSOL]": 1} "L2R" ["BETAGALACTOSID-CPLX"] "BIOTIN-CARBOXYL-RXN" {"biotin-L-lysine-in-BCCP-dimers[CCO-CYTOSOL]": -1, "HCO3[CCO-CYTOSOL]": -1, "ATP[CCO-CYTOSOL]": -1, "carboxybiotin-L-lysine-in-BCCP-dimers[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["BIOTIN-CARBOXYL-CPLX"] "BIOTINLIG-RXN" {"BCCP-L-lysine[CCO-CYTOSOL]": -1, "ATP[CCO-CYTOSOL]": -1, "BIOTIN[CCO-CYTOSOL]": -1, "AMP[CCO-CYTOSOL]": 1, "BCCP-biotin-L-lysine[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["BIOTINLIG-MONOMER"] "BIS5-ADENOSYL-TRIPHOSPHATASE-RXN" {"ADENOSINE5TRIPHOSPHO5ADENOSINE[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "AMP[CCI-PERI-BAC-GN]": 1, "ADP[CCI-PERI-BAC-GN]": 1, "PROTON[CCI-PERI-BAC-GN]": 2} "L2R" ["USHA-MONOMER"] @@ -791,14 +797,14 @@ "DIMESULFREDUCT-RXN-CPD-7670/CPD-9728/WATER//DMSO/REDUCED-MENAQUINONE.50." {"CPD-7670[CCO-PERI-BAC]": -1, "CPD-9728[CCO-PM-BAC-NEG]": -1, "WATER[CCO-PERI-BAC]": -1, "DMSO[CCO-PERI-BAC]": 1, "REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": 1} "R2L" ["DIMESULFREDUCT-CPLX"] "DIMETHUROPORDEHYDROG-RXN" {"DIHYDROSIROHYDROCHLORIN[CCO-CYTOSOL]": -1, "NAD[CCO-CYTOSOL]": -1, "SIROHYDROCHLORIN[CCO-CYTOSOL]": 1, "NADH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" ["SIROHEMESYN-CPLX"] "DIOHBUTANONEPSYN-RXN" {"RIBULOSE-5P[CCO-CYTOSOL]": -1, "DIHYDROXY-BUTANONE-P[CCO-CYTOSOL]": 1, "FORMATE[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["DIOHBUTANONEPSYN-CPLX"] -"DISULFOXRED-RXN[CCO-CYTOSOL]-MONOMER0-4152/DISULFOXRED-MONOMER//DISULFOXRED-MONOMER/MONOMER0-4152.82." {"MONOMER0-4152[CCO-CYTOSOL]": -1, "DISULFOXRED-MONOMER[CCO-CYTOSOL]": -1, "DISULFOXRED-MONOMER[CCO-CYTOSOL]": 1, "MONOMER0-4152[CCO-CYTOSOL]": 1} "L2R" [] -"DISULFOXRED-RXN[CCO-CYTOSOL]-MONOMER0-4152/Protein-Red-Disulfides//DISULFOXRED-MONOMER/Protein-Ox-Disulfides.93." {"MONOMER0-4152[CCO-CYTOSOL]": -1, "Protein-Red-Disulfides[CCO-CYTOSOL]": -1, "DISULFOXRED-MONOMER[CCO-CYTOSOL]": 1, "Protein-Ox-Disulfides[CCO-CYTOSOL]": 1} "L2R" [] -"DISULFOXRED-RXN[CCO-CYTOSOL]-Oxidized-Disulfide-Carrier-Proteins/DISULFOXRED-MONOMER//Reduced-Disulfide-Carrier-Proteins/MONOMER0-4152.119." {"Oxidized-Disulfide-Carrier-Proteins[CCO-CYTOSOL]": -1, "DISULFOXRED-MONOMER[CCO-CYTOSOL]": -1, "Reduced-Disulfide-Carrier-Proteins[CCO-CYTOSOL]": 1, "MONOMER0-4152[CCO-CYTOSOL]": 1} "L2R" [] -"DISULFOXRED-RXN[CCO-CYTOSOL]-Oxidized-Disulfide-Carrier-Proteins/Protein-Red-Disulfides//Reduced-Disulfide-Carrier-Proteins/Protein-Ox-Disulfides.130." {"Oxidized-Disulfide-Carrier-Proteins[CCO-CYTOSOL]": -1, "Protein-Red-Disulfides[CCO-CYTOSOL]": -1, "Reduced-Disulfide-Carrier-Proteins[CCO-CYTOSOL]": 1, "Protein-Ox-Disulfides[CCO-CYTOSOL]": 1} "L2R" [] -"DISULFOXRED-RXN[CCO-PERI-BAC]-MONOMER0-4152/DISULFOXRED-MONOMER//DISULFOXRED-MONOMER/MONOMER0-4152.83." {"MONOMER0-4152[CCO-PERI-BAC]": -1, "DISULFOXRED-MONOMER[CCO-PERI-BAC]": -1, "DISULFOXRED-MONOMER[CCO-PERI-BAC]": 1, "MONOMER0-4152[CCO-PERI-BAC]": 1} "L2R" [] -"DISULFOXRED-RXN[CCO-PERI-BAC]-MONOMER0-4152/Protein-Red-Disulfides//DISULFOXRED-MONOMER/Protein-Ox-Disulfides.94." {"MONOMER0-4152[CCO-PERI-BAC]": -1, "Protein-Red-Disulfides[CCO-PERI-BAC]": -1, "DISULFOXRED-MONOMER[CCO-PERI-BAC]": 1, "Protein-Ox-Disulfides[CCO-PERI-BAC]": 1} "L2R" [] -"DISULFOXRED-RXN[CCO-PERI-BAC]-Oxidized-Disulfide-Carrier-Proteins/DISULFOXRED-MONOMER//Reduced-Disulfide-Carrier-Proteins/MONOMER0-4152.120." {"Oxidized-Disulfide-Carrier-Proteins[CCO-PERI-BAC]": -1, "DISULFOXRED-MONOMER[CCO-PERI-BAC]": -1, "Reduced-Disulfide-Carrier-Proteins[CCO-PERI-BAC]": 1, "MONOMER0-4152[CCO-PERI-BAC]": 1} "L2R" [] -"DISULFOXRED-RXN[CCO-PERI-BAC]-Oxidized-Disulfide-Carrier-Proteins/Protein-Red-Disulfides//Reduced-Disulfide-Carrier-Proteins/Protein-Ox-Disulfides.131." {"Oxidized-Disulfide-Carrier-Proteins[CCO-PERI-BAC]": -1, "Protein-Red-Disulfides[CCO-PERI-BAC]": -1, "Reduced-Disulfide-Carrier-Proteins[CCO-PERI-BAC]": 1, "Protein-Ox-Disulfides[CCO-PERI-BAC]": 1} "L2R" [] +"DISULFOXRED-RXN[CCO-CYTOSOL]-MONOMER0-4152/DISULFOXRED-MONOMER//DISULFOXRED-MONOMER/MONOMER0-4152.82." {"MONOMER0-4152[CCO-CYTOSOL]": -1, "DISULFOXRED-MONOMER[CCO-CYTOSOL]": -1, "DISULFOXRED-MONOMER[CCO-CYTOSOL]": 1, "MONOMER0-4152[CCO-CYTOSOL]": 1} "BOTH" [] +"DISULFOXRED-RXN[CCO-CYTOSOL]-MONOMER0-4152/Protein-Red-Disulfides//DISULFOXRED-MONOMER/Protein-Ox-Disulfides.93." {"MONOMER0-4152[CCO-CYTOSOL]": -1, "Protein-Red-Disulfides[CCO-CYTOSOL]": -1, "DISULFOXRED-MONOMER[CCO-CYTOSOL]": 1, "Protein-Ox-Disulfides[CCO-CYTOSOL]": 1} "BOTH" [] +"DISULFOXRED-RXN[CCO-CYTOSOL]-Oxidized-Disulfide-Carrier-Proteins/DISULFOXRED-MONOMER//Reduced-Disulfide-Carrier-Proteins/MONOMER0-4152.119." {"Oxidized-Disulfide-Carrier-Proteins[CCO-CYTOSOL]": -1, "DISULFOXRED-MONOMER[CCO-CYTOSOL]": -1, "Reduced-Disulfide-Carrier-Proteins[CCO-CYTOSOL]": 1, "MONOMER0-4152[CCO-CYTOSOL]": 1} "BOTH" [] +"DISULFOXRED-RXN[CCO-CYTOSOL]-Oxidized-Disulfide-Carrier-Proteins/Protein-Red-Disulfides//Reduced-Disulfide-Carrier-Proteins/Protein-Ox-Disulfides.130." {"Oxidized-Disulfide-Carrier-Proteins[CCO-CYTOSOL]": -1, "Protein-Red-Disulfides[CCO-CYTOSOL]": -1, "Reduced-Disulfide-Carrier-Proteins[CCO-CYTOSOL]": 1, "Protein-Ox-Disulfides[CCO-CYTOSOL]": 1} "BOTH" [] +"DISULFOXRED-RXN[CCO-PERI-BAC]-MONOMER0-4152/DISULFOXRED-MONOMER//DISULFOXRED-MONOMER/MONOMER0-4152.83." {"MONOMER0-4152[CCO-PERI-BAC]": -1, "DISULFOXRED-MONOMER[CCO-PERI-BAC]": -1, "DISULFOXRED-MONOMER[CCO-PERI-BAC]": 1, "MONOMER0-4152[CCO-PERI-BAC]": 1} "BOTH" [] +"DISULFOXRED-RXN[CCO-PERI-BAC]-MONOMER0-4152/Protein-Red-Disulfides//DISULFOXRED-MONOMER/Protein-Ox-Disulfides.94." {"MONOMER0-4152[CCO-PERI-BAC]": -1, "Protein-Red-Disulfides[CCO-PERI-BAC]": -1, "DISULFOXRED-MONOMER[CCO-PERI-BAC]": 1, "Protein-Ox-Disulfides[CCO-PERI-BAC]": 1} "BOTH" [] +"DISULFOXRED-RXN[CCO-PERI-BAC]-Oxidized-Disulfide-Carrier-Proteins/DISULFOXRED-MONOMER//Reduced-Disulfide-Carrier-Proteins/MONOMER0-4152.120." {"Oxidized-Disulfide-Carrier-Proteins[CCO-PERI-BAC]": -1, "DISULFOXRED-MONOMER[CCO-PERI-BAC]": -1, "Reduced-Disulfide-Carrier-Proteins[CCO-PERI-BAC]": 1, "MONOMER0-4152[CCO-PERI-BAC]": 1} "BOTH" [] +"DISULFOXRED-RXN[CCO-PERI-BAC]-Oxidized-Disulfide-Carrier-Proteins/Protein-Red-Disulfides//Reduced-Disulfide-Carrier-Proteins/Protein-Ox-Disulfides.131." {"Oxidized-Disulfide-Carrier-Proteins[CCO-PERI-BAC]": -1, "Protein-Red-Disulfides[CCO-PERI-BAC]": -1, "Reduced-Disulfide-Carrier-Proteins[CCO-PERI-BAC]": 1, "Protein-Ox-Disulfides[CCO-PERI-BAC]": 1} "BOTH" [] "DLACTDEHYDROGFAD-RXN-D-LACTATE/UBIQUINONE-8//PYRUVATE/CPD-9956.42." {"D-LACTATE[CCO-CYTOSOL]": -1, "UBIQUINONE-8[CCO-PM-BAC-NEG]": -1, "PYRUVATE[CCO-CYTOSOL]": 1, "CPD-9956[CCO-PM-BAC-NEG]": 1} "L2R" ["DLACTDEHYDROGFAD-MONOMER"] "DLACTDEHYDROGNAD-RXN" {"D-LACTATE[CCO-CYTOSOL]": -1, "NAD[CCO-CYTOSOL]": -1, "PYRUVATE[CCO-CYTOSOL]": 1, "NADH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "R2L" ["CPLX0-8158"] "DMBPPRIBOSYLTRANS-RXN" {"NICOTINATE_NUCLEOTIDE[CCO-CYTOSOL]": -1, "DIMETHYLBENZIMIDAZOLE[CCO-CYTOSOL]": -1, "NIACINE[CCO-CYTOSOL]": 1, "ALPHA-RIBAZOLE-5-P[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["DMBPPRIBOSYLTRANS-CPLX"] @@ -807,7 +813,7 @@ "DNA-LIGASE-NAD+-RXN" {"3-Hydroxy-Terminated-DNAs[CCO-CYTOSOL]": -1, "5-Phospho-terminated-DNAs[CCO-CYTOSOL]": -1, "NAD[CCO-CYTOSOL]": -1, "DNA-N[CCO-CYTOSOL]": 1, "AMP[CCO-CYTOSOL]": 1, "NICOTINAMIDE_NUCLEOTIDE[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["EG10534-MONOMER", "EG11334-MONOMER"] "DSBD-RXN-an-oxidized-DsbG-protein/a-reduced-DsbD-protein//a-reduced-DsbG-protein/an-oxidized-DsbD-protein.97." {"an-oxidized-DsbG-protein[CCO-PERI-BAC]": -1, "a-reduced-DsbD-protein[CCO-PM-BAC-NEG]": -1, "a-reduced-DsbG-protein[CCO-PERI-BAC]": 1, "an-oxidized-DsbD-protein[CCO-PM-BAC-NEG]": 1} "L2R" [] "DSBDC-RXN-a-reduced-DsbD-protein/an-oxidized-DsbC-protein//an-oxidized-DsbD-protein/a-reduced-DsbC-protein.97." {"a-reduced-DsbD-protein[CCO-PM-BAC-NEG]": -1, "an-oxidized-DsbC-protein[CCO-PERI-BAC]": -1, "an-oxidized-DsbD-protein[CCO-PM-BAC-NEG]": 1, "a-reduced-DsbC-protein[CCO-PERI-BAC]": 1} "L2R" [] -"DSERDEAM-RXN" {"D-SERINE[CCO-CYTOSOL]": -1, "PYRUVATE[CCO-CYTOSOL]": 1, "AMMONIUM[CCO-CYTOSOL]": 1} "L2R" ["DSERDEAM-MONOMER"] +"DSERDEAM-RXN" {"D-SERINE[CCO-CYTOSOL]": -1, "PYRUVATE[CCO-CYTOSOL]": 1, "AMMONIUM[CCO-CYTOSOL]": 1} "L2R" ["GLYOHMETRANS-CPLX", "DSERDEAM-MONOMER"] "DTDPDEHYDRHAMEPIM-RXN" {"DTDP-DEOH-DEOXY-GLUCOSE[CCO-CYTOSOL]": -1, "DTDP-DEOH-DEOXY-MANNOSE[CCO-CYTOSOL]": 1} "L2R" ["DTDPDEHYDRHAMEPIM-MONOMER"] "DTDPDEHYRHAMREDUCT-RXN" {"DTDP-RHAMNOSE[CCO-CYTOSOL]": -1, "NADP[CCO-CYTOSOL]": -1, "DTDP-DEOH-DEOXY-MANNOSE[CCO-CYTOSOL]": 1, "NADPH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "R2L" ["DTDPDEHYRHAMREDUCT-MONOMER"] "DTDPGLUCDEHYDRAT-RXN" {"DTDP-D-GLUCOSE[CCO-CYTOSOL]": -1, "DTDP-DEOH-DEOXY-GLUCOSE[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["DTDPGLUCDEHYDRAT2-MONOMER", "DTDPGLUCDEHYDRAT-CPLX"] @@ -994,7 +1000,7 @@ "GTP-CYCLOHYDRO-I-RXN" {"GTP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "FORMATE[CCO-CYTOSOL]": 1, "DIHYDRONEOPTERIN-P3[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["FOLE-CPLX"] "GTP-CYCLOHYDRO-II-RXN" {"GTP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -4, "DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR[CCO-CYTOSOL]": 1, "FORMATE[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 3} "L2R" ["GTP-CYCLOHYDRO-II-CPLX"] "GTPPYPHOSKIN-RXN" {"GTP[CCO-CYTOSOL]": -1, "ATP[CCO-CYTOSOL]": -1, "GDP-TP[CCO-CYTOSOL]": 1, "AMP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["RELA-MONOMER"] -"GUANINE-DEAMINASE-RXN" {"GUANINE[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "AMMONIUM[CCO-CYTOSOL]": 1, "XANTHINE[CCO-CYTOSOL]": 1} "L2R" ["G7502-MONOMER"] +"GUANINE-DEAMINASE-RXN" {"GUANINE[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "XANTHINE[CCO-CYTOSOL]": 1, "AMMONIUM[CCO-CYTOSOL]": 1} "L2R" ["G7502-MONOMER"] "GUANOSINE-DIPHOSPHATASE-RXN" {"GDP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GMP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["G6580-MONOMER"] "GUANOSINEKIN-RXN" {"GUANOSINE[CCO-CYTOSOL]": -1, "ATP[CCO-CYTOSOL]": -1, "GMP[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-322"] "GUANPRIBOSYLTRAN-RXN" {"GMP[CCO-CYTOSOL]": -1, "PPI[CCO-CYTOSOL]": -1, "GUANINE[CCO-CYTOSOL]": 1, "PRPP[CCO-CYTOSOL]": 1} "R2L" ["CPLX0-7685", "GPT-CPLX"] @@ -1738,6 +1744,9 @@ "RXN-14569" {"THR[CCO-CYTOSOL]": -1, "HCO3[CCO-CYTOSOL]": -1, "ATP[CCO-CYTOSOL]": -1, "CPD-15435[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "BOTH" ["G7698-MONOMER"] "RXN-14570" {"CPD-15435[CCO-CYTOSOL]": -1, "tRNA-adenine-37[CCO-CYTOSOL]": -1, "N6-L-threonylcarbamoyladenine37-tRNAs[CCO-CYTOSOL]": 1, "AMP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8182"] "RXN-14693" {"D-Glucopyranuronate[CCO-CYTOSOL]": -1, "CPD-15530[CCO-CYTOSOL]": 1} "BOTH" [] +"RXN-14722" {"CPD-13211[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "P-NITROPHENOL[CCI-PERI-BAC-GN]": 1, "Glucopyranose[CCI-PERI-BAC-GN]": 1, "PROTON[CCI-PERI-BAC-GN]": 1} "L2R" ["EG12013-MONOMER"] +"RXN-14722-CPD-13211/WATER//P-NITROPHENOL/ALPHA-GLUCOSE/PROTON.52." {"CPD-13211[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "P-NITROPHENOL[CCI-PERI-BAC-GN]": 1, "ALPHA-GLUCOSE[CCI-PERI-BAC-GN]": 1, "PROTON[CCI-PERI-BAC-GN]": 1} "L2R" ["EG12013-MONOMER"] +"RXN-14722-CPD-13211/WATER//P-NITROPHENOL/GLC/PROTON.42." {"CPD-13211[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "P-NITROPHENOL[CCI-PERI-BAC-GN]": 1, "GLC[CCI-PERI-BAC-GN]": 1, "PROTON[CCI-PERI-BAC-GN]": 1} "L2R" ["EG12013-MONOMER"] "RXN-14747" {"D-Allopyranose[CCO-CYTOSOL]": -1, "CPD-15629[CCO-CYTOSOL]": 1} "BOTH" [] "RXN-14753" {"D-Galactopyranuronate[CCO-CYTOSOL]": -1, "CPD-15633[CCO-CYTOSOL]": 1} "BOTH" [] "RXN-14806" {"D-arabinopyranose[CCO-CYTOSOL]": -1, "CPD-15700[CCO-CYTOSOL]": 1} "BOTH" [] @@ -1829,7 +1838,7 @@ "RXN-15512" {"Protein-pi-phospho-L-histidines[CCO-CYTOSOL]": -1, "CPD-16758[CCO-CYTOSOL]": -1, "Protein-Histidines[CCO-CYTOSOL]": 1, "23-DIPHOSPHOGLYCERATE[CCO-CYTOSOL]": 1} "BOTH" ["PHOSGLYCMUTASE"] "RXN-15513" {"2-PG[CCO-CYTOSOL]": -1, "G3P[CCO-CYTOSOL]": 1} "BOTH" ["PHOSGLYCMUTASE"] "RXN-15578" {"TRP[CCO-CYTOSOL]": -1, "INDOLE[CCO-CYTOSOL]": 1, "2-AMINOACRYLATE[CCO-CYTOSOL]": 1} "L2R" ["TRYPTOPHAN-CPLX"] -"RXN-15581" {"D-SERINE[CCO-CYTOSOL]": -1, "2-AMINOACRYLATE[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["DSERDEAM-MONOMER"] +"RXN-15581" {"D-SERINE[CCO-CYTOSOL]": -1, "2-AMINOACRYLATE[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["GLYOHMETRANS-CPLX", "DSERDEAM-MONOMER"] "RXN-15607" {"11-DEOXYCORTICOSTERONE[CCO-CYTOSOL]": -1, "NADH[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "CPD-16843[CCO-CYTOSOL]": 1, "NAD[CCO-CYTOSOL]": 1} "L2R" ["KDUD-MONOMER"] "RXN-15740-GLYCEROL-3P/CPD-9728//DIHYDROXY-ACETONE-PHOSPHATE/REDUCED-MENAQUINONE.70." {"GLYCEROL-3P[CCO-CYTOSOL]": -1, "CPD-9728[CCO-PM-BAC-NEG]": -1, "DIHYDROXY-ACETONE-PHOSPHATE[CCO-CYTOSOL]": 1, "REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": 1} "L2R" ["ANGLYC3PDEHYDROG-CPLX"] "RXN-15743" {"CPD-8891[CCO-CYTOSOL]": -1, "NADP[CCO-CYTOSOL]": -1, "CPD-358[CCO-CYTOSOL]": 1, "NADPH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "R2L" ["CPLX0-7667", "G6190-MONOMER", "CPLX0-8549", "G6269-MONOMER"] @@ -1860,7 +1869,7 @@ "RXN-16424-Phosphorylated-Phosphoglucosamine-Mutase/CPD-13469//CPD0-1096/Phosphoglucosamine-Mutase.88." {"Phosphorylated-Phosphoglucosamine-Mutase[CCO-CYTOSOL]": -1, "CPD-13469[CCO-CYTOSOL]": -1, "CPD0-1096[CCO-CYTOSOL]": 1, "Phosphoglucosamine-Mutase[CCO-CYTOSOL]": 1} "BOTH" ["CPLX0-8583"] "RXN-16454" {"Protein-Tyrosines[CCO-CYTOSOL]": -1, "OXYGEN-MOLECULE[CCO-CYTOSOL]": -2, "TOPAQUINONE[CCO-CYTOSOL]": 1, "HYDROGEN-PEROXIDE[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" [] "RXN-16456" {"GTP[CCO-CYTOSOL]": -2, "CPD-15874[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -2, "CPD-15873[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 2} "L2R" ["EG11829-MONOMER"] -"RXN-16457" {"CPD-8123[CCO-CYTOSOL]": -1, "CPD-4[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "CPD-15874[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["EG11829-MONOMER"] +"RXN-16457" {"CPD-15870[CCO-CYTOSOL]": -1, "CPD-4[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "CPD-15874[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 2} "L2R" ["EG11829-MONOMER"] "RXN-16649[CCI-PERI-BAC-GN]-CPD-17927/WATER//CPD-17926/D-ALANINE.54." {"CPD-17927[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "CPD-17926[CCI-PERI-BAC-GN]": 1, "D-ALANINE[CCI-PERI-BAC-GN]": 1} "L2R" ["CPLX0-3951", "CPLX0-7717"] "RXN-16649[CCO-PERI-BAC]-CPD-17927/WATER//CPD-17926/D-ALANINE.51." {"CPD-17927[CCO-PERI-BAC]": -1, "WATER[CCO-PERI-BAC]": -1, "CPD-17926[CCO-PERI-BAC]": 1, "D-ALANINE[CCO-PERI-BAC]": 1} "L2R" ["EG12867-MONOMER", "G7265-MONOMER", "CPLX0-8254", "RPOA-MONOMER", "CPLX0-8252"] "RXN-16659" {"CPD-17927[CCO-PERI-BAC]": -1, "CPD-17931[CCO-PERI-BAC]": -1, "CPD-17932[CCO-PERI-BAC]": 1, "D-ALANINE[CCO-PERI-BAC]": 1} "L2R" ["EG10606-MONOMER", "EG10341-MONOMER", "CPLX0-3951", "CPLX0-7717"] @@ -2263,11 +2272,11 @@ "RXN-21539-CPD-1302/Methionine-synthase-cob-I-alamins/PROTON//CPD-1301/METHIONINE-SYNTHASE-METHYLCOBALAMIN.96." {"CPD-1302[CCO-CYTOSOL]": -1, "Methionine-synthase-cob-I-alamins[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "CPD-1301[CCO-CYTOSOL]": 1, "METHIONINE-SYNTHASE-METHYLCOBALAMIN[CCO-CYTOSOL]": 1} "L2R" ["HOMOCYSMETB12-MONOMER"] "RXN-21550" {"Loaded-Mo-bis-MGD-Chaperones[CCO-CYTOSOL]": -1, "Mo-bis-MGD-Chaperone-Cys-Persulfide[CCO-CYTOSOL]": -1, "Donor-H2[CCO-CYTOSOL]": -1, "Mo-bis-MGD-Chaperone-L-cysteine[CCO-CYTOSOL]": 1, "CPD-23449[CCO-CYTOSOL]": 1, "Acceptor[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8175"] "RXN-21562" {"Mo-bis-MGD-Chaperones[CCO-CYTOSOL]": -1, "CPD-15873[CCO-CYTOSOL]": -1, "Loaded-Mo-bis-MGD-Chaperones[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8175"] +"RXN-21563" {"CPD-8122[CCO-CYTOSOL]": -1, "CPD-3[CCO-CYTOSOL]": -1, "AMP[CCO-CYTOSOL]": 1, "CPD-15870[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8045"] "RXN-21565" {"L-Cysteine-Desulfurase-persulfide[CCO-CYTOSOL]": -1, "Mo-bis-MGD-Chaperone-L-cysteine[CCO-CYTOSOL]": -1, "Cysteine-Desulfurase-L-cysteine[CCO-CYTOSOL]": 1, "Mo-bis-MGD-Chaperone-Cys-Persulfide[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-248"] "RXN-21566" {"CYS[CCO-CYTOSOL]": -1, "Mo-bis-MGD-Chaperone-L-cysteine[CCO-CYTOSOL]": -1, "L-ALPHA-ALANINE[CCO-CYTOSOL]": 1, "Mo-bis-MGD-Chaperone-Cys-Persulfide[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-248"] -"RXN-21601" {"GTP[CCO-CYTOSOL]": -2, "CPD-8123[CCO-CYTOSOL]": -1, "CPD-4[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -3, "CPD-15873[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 2, "WATER[CCO-CYTOSOL]": 1} "L2R" ["EG11829-MONOMER"] +"RXN-21601" {"GTP[CCO-CYTOSOL]": -2, "CPD-15870[CCO-CYTOSOL]": -1, "CPD-4[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -3, "CPD-15873[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 2, "WATER[CCO-CYTOSOL]": 2} "L2R" ["EG11829-MONOMER"] "RXN-21728" {"N7-METHYLGUANINE-IN-DNA[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "DNA-containing-abasic-Sites[CCO-CYTOSOL]": 1, "CPD0-2377[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["G6471-MONOMER"] -"RXN-21817-CPD-9956/PROTON/OXYGEN-MOLECULE//UBIQUINONE-8/PROTON/WATER.59." {"CPD-9956[CCO-PM-BAC-NEG]": -2, "PROTON[CCO-CYTOSOL]": -8, "OXYGEN-MOLECULE[CCO-CYTOSOL]": -1, "UBIQUINONE-8[CCO-PM-BAC-NEG]": 2, "PROTON[CCO-PERI-BAC]": 8, "WATER[CCO-CYTOSOL]": 2} "L2R" ["CYT-O-UBIOX-CPLX"] "RXN-21858" {"CPD-14736[CCO-CYTOSOL]": -1, "2-KETOGLUTARATE[CCO-CYTOSOL]": -1, "KYNURENATE[CCO-CYTOSOL]": 1, "GLT[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ASPAMINOTRANS-DIMER"] "RXN-21990" {"PREPHENATE[CCO-CYTOSOL]": -1, "23S-rRNA-cytosine-2501[CCO-CYTOSOL]": -1, "Acceptor[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "PHENYL-PYRUVATE[CCO-CYTOSOL]": 1, "5-Hydroxy-23S-rRNA-Cytosines2501[CCO-CYTOSOL]": 1, "CARBON-DIOXIDE[CCO-CYTOSOL]": 1, "Donor-H2[CCO-CYTOSOL]": 1} "L2R" ["G6746-MONOMER"] "RXN-21992" {"Inactive-Der-GTPAses[CCO-CYTOSOL]": -1, "Der-GTPase[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-7853"] @@ -2289,8 +2298,8 @@ "RXN-22385" {"CPD0-2040[CCO-CYTOSOL]": -1, "PROTON[CCO-PERI-BAC]": -1, "CPD0-2040[CCO-PERI-BAC]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX-7"] "RXN-22388" {"CPD-16459[CCO-CYTOSOL]": -1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "BOTH" [] "RXN-22427" {"a-mature-triacylated-lipoprotein[CCO-PM-BAC-NEG]": -1, "LolA[CCO-PERI-BAC]": -1, "ATP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "LolA-Lipoprotein-Complex[CCO-PERI-BAC]": 1, "ADP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ABC-62-CPLX"] -"RXN-22438-5-METHYL-THF/NAD//METHYLENE-THF/NADH/PROTON.44." {"5-METHYL-THF[CCO-CYTOSOL]": -1, "NAD[CCO-CYTOSOL]": -1, "METHYLENE-THF[CCO-CYTOSOL]": 1, "NADH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "R2L" ["METHYLENETHFREDUCT-CPLX"] -"RXN-22438-CPD-1302/NAD//CPD-12996/NADH/PROTON.36." {"CPD-1302[CCO-CYTOSOL]": -1, "NAD[CCO-CYTOSOL]": -1, "CPD-12996[CCO-CYTOSOL]": 1, "NADH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "R2L" ["METHYLENETHFREDUCT-CPLX"] +"RXN-22438-5-METHYL-THF/NAD//METHYLENE-THF/NADH/PROTON.44." {"5-METHYL-THF[CCO-CYTOSOL]": -1, "NAD[CCO-CYTOSOL]": -1, "METHYLENE-THF[CCO-CYTOSOL]": 1, "NADH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "BOTH" ["METHYLENETHFREDUCT-CPLX"] +"RXN-22438-CPD-1302/NAD//CPD-12996/NADH/PROTON.36." {"CPD-1302[CCO-CYTOSOL]": -1, "NAD[CCO-CYTOSOL]": -1, "CPD-12996[CCO-CYTOSOL]": 1, "NADH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "BOTH" ["METHYLENETHFREDUCT-CPLX"] "RXN-22443" {"FMNH2[CCO-CYTOSOL]": -1, "OXYGEN-MOLECULE[CCO-CYTOSOL]": -1, "CPD-24463[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" ["G6523-MONOMER"] "RXN-22449" {"NA+[CCO-PERI-BAC]": -1, "THR[CCO-PERI-BAC]": -1, "NA+[CCO-CYTOSOL]": 1, "THR[CCO-CYTOSOL]": 1} "L2R" ["YGJU-MONOMER"] "RXN-22461" {"CPD0-930[CCO-CYTOSOL]": -1, "ATP[CCO-CYTOSOL]": -1, "CPD-24487[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["EG11340-MONOMER"] @@ -2334,8 +2343,8 @@ "RXN-22736" {"CPD-18238[CCO-CYTOSOL]": -1, "AMMONIA[CCO-CYTOSOL]": -1, "CARBAMATE[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CARBPSYN-CPLX"] "RXN-22774" {"CPD-15374[CCO-CYTOSOL]": -1, "LEU[CCO-CYTOSOL]": -1, "CPD-25235[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" [] "RXN-22775" {"CPD-15374[CCO-CYTOSOL]": -1, "VAL[CCO-CYTOSOL]": -1, "CPD-25236[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" [] -"RXN-22776" {"CPD-15374[CCO-CYTOSOL]": -1, "GLY[CCO-CYTOSOL]": -1, "FRUCTOSEGLYCINE[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" [] -"RXN-22777" {"CPD-15374[CCO-CYTOSOL]": -1, "LYS[CCO-CYTOSOL]": -1, "CPD-25240[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" [] +"RXN-22776" {"CPD-15374[CCO-CYTOSOL]": -1, "GLY[CCO-CYTOSOL]": -1, "CPD-26731[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" [] +"RXN-22777" {"CPD-15374[CCO-CYTOSOL]": -1, "LYS[CCO-CYTOSOL]": -1, "CPD-25240[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" [] "RXN-22778" {"CPD-15374[CCO-CYTOSOL]": -1, "L-ALPHA-ALANINE[CCO-CYTOSOL]": -1, "CPD-25241[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" [] "RXN-22790" {"CPD-15374[CCO-CYTOSOL]": -1, "GLN[CCO-CYTOSOL]": -1, "CPD-25248[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" [] "RXN-22817" {"D-xylofuranose[CCO-CYTOSOL]": -1, "D-Xylopyranose[CCO-CYTOSOL]": 1} "BOTH" [] @@ -2402,6 +2411,15 @@ "RXN-24129" {"CPD-26676[CCO-CYTOSOL]": -1, "METHYL-GLYOXAL[CCO-CYTOSOL]": 1, "GLUTATHIONE[CCO-CYTOSOL]": 1} "R2L" [] "RXN-24132-CPD-26678/NADH//HSCN/NAD/WATER.31." {"CPD-26678[CCO-CYTOSOL]": -1, "NADH[CCO-CYTOSOL]": -1, "HSCN[CCO-CYTOSOL]": 1, "NAD[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8542"] "RXN-24132-CPD-26678/NADPH//HSCN/NADP/WATER.33." {"CPD-26678[CCO-CYTOSOL]": -1, "NADPH[CCO-CYTOSOL]": -1, "HSCN[CCO-CYTOSOL]": 1, "NADP[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8542"] +"RXN-24141" {"CPD-8122[CCO-CYTOSOL]": -1, "CPD-3[CCO-CYTOSOL]": -1, "CPD-26686[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8045"] +"RXN-24142" {"CPD-26686[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "CPD-26685[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8045"] +"RXN-24143" {"CPD-26685[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "AMP[CCO-CYTOSOL]": 1, "CPD-15870[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" ["CPLX0-8045"] +"RXN-24169" {"CPD-9115[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "CPD-258[CCI-PERI-BAC-GN]": 1, "D-galactopyranose[CCI-PERI-BAC-GN]": 1, "PROTON[CCI-PERI-BAC-GN]": 1} "L2R" ["EG12013-MONOMER"] +"RXN-24169-CPD-9115/WATER//CPD-258/ALPHA-D-GALACTOSE/PROTON.49." {"CPD-9115[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "CPD-258[CCI-PERI-BAC-GN]": 1, "ALPHA-D-GALACTOSE[CCI-PERI-BAC-GN]": 1, "PROTON[CCI-PERI-BAC-GN]": 1} "L2R" ["EG12013-MONOMER"] +"RXN-24169-CPD-9115/WATER//CPD-258/GALACTOSE/PROTON.41." {"CPD-9115[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "CPD-258[CCI-PERI-BAC-GN]": 1, "GALACTOSE[CCI-PERI-BAC-GN]": 1, "PROTON[CCI-PERI-BAC-GN]": 1} "L2R" ["EG12013-MONOMER"] +"RXN-24170" {"CPD-21655[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "CPD-258[CCI-PERI-BAC-GN]": 1, "Glucopyranose[CCI-PERI-BAC-GN]": 1, "PROTON[CCI-PERI-BAC-GN]": 1} "L2R" ["EG12013-MONOMER"] +"RXN-24170-CPD-21655/WATER//CPD-258/ALPHA-GLUCOSE/PROTON.46." {"CPD-21655[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "CPD-258[CCI-PERI-BAC-GN]": 1, "ALPHA-GLUCOSE[CCI-PERI-BAC-GN]": 1, "PROTON[CCI-PERI-BAC-GN]": 1} "L2R" ["EG12013-MONOMER"] +"RXN-24170-CPD-21655/WATER//CPD-258/GLC/PROTON.36." {"CPD-21655[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "CPD-258[CCI-PERI-BAC-GN]": 1, "GLC[CCI-PERI-BAC-GN]": 1, "PROTON[CCI-PERI-BAC-GN]": 1} "L2R" ["EG12013-MONOMER"] "RXN-2425" {"3-HYDROXYADIPYL-COA[CCO-CYTOSOL]": -1, "TRANS-23-DEHYDROADIPYL-COA[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "BOTH" ["G6714-MONOMER"] "RXN-2881-FORMALDEHYDE/CPD-1301//CPD-12996/WATER.39." {"FORMALDEHYDE[CCO-CYTOSOL]": -1, "CPD-1301[CCO-CYTOSOL]": -1, "CPD-12996[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" [] "RXN-2881-FORMALDEHYDE/THF//METHYLENE-THF/WATER.38." {"FORMALDEHYDE[CCO-CYTOSOL]": -1, "THF[CCO-CYTOSOL]": -1, "METHYLENE-THF[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" [] @@ -2448,9 +2466,8 @@ "RXN-8182" {"CPD-280[CCO-CYTOSOL]": -1, "NADP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GLUTARATE[CCO-CYTOSOL]": 1, "NADPH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" ["CPLX0-7688", "CPLX0-7687"] "RXN-8315" {"SO3[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "HSO3[CCO-CYTOSOL]": 1} "BOTH" [] "RXN-8340" {"GTP[CCO-CYTOSOL]": -1, "S-ADENOSYLMETHIONINE[CCO-CYTOSOL]": -1, "Donor-H2[CCO-CYTOSOL]": -1, "CPD-19179[CCO-CYTOSOL]": 1, "MET[CCO-CYTOSOL]": 1, "CH33ADO[CCO-CYTOSOL]": 1, "Acceptor[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["EG11595-MONOMER"] -"RXN-8342" {"PRECURSOR-Z[CCO-CYTOSOL]": -1, "Thiocarboxylated-MPT-synthases[CCO-CYTOSOL]": -2, "WATER[CCO-CYTOSOL]": -1, "MPT-Synthase-small-subunits[CCO-CYTOSOL]": 2, "CPD-4[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 4} "L2R" ["CPLX0-2502"] +"RXN-8342" {"PRECURSOR-Z[CCO-CYTOSOL]": -1, "Thiocarboxylated-MPT-synthases[CCO-CYTOSOL]": -2, "WATER[CCO-CYTOSOL]": -1, "MPT-Synthase-small-subunits[CCO-CYTOSOL]": 2, "CPD-4[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 3} "L2R" ["CPLX0-2502"] "RXN-8344" {"ATP[CCO-CYTOSOL]": -1, "CPD-4[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "CPD-8122[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8163"] -"RXN-8348" {"CPD-8122[CCO-CYTOSOL]": -1, "CPD-3[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "AMP[CCO-CYTOSOL]": 1, "CPD-8123[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8045"] "RXN-8460" {"L-DIHYDROXY-PHENYLALANINE[CCO-CYTOSOL]": -1, "OXYGEN-MOLECULE[CCO-CYTOSOL]": -1, "CPD-253[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["EG11166-MONOMER"] "RXN-8461" {"CPD-253[CCO-CYTOSOL]": -1, "CPD-8651[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" [] "RXN-8487" {"TYR[CCO-CYTOSOL]": -1, "CPD-8651[CCO-CYTOSOL]": -1, "CPD-8670[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" [] @@ -2650,7 +2667,7 @@ "RXN0-2561-CPD-43/NA+//CPD-43/NA+.23." {"CPD-43[CCO-CYTOSOL]": -1, "NA+[CCO-PERI-BAC]": -1, "CPD-43[CCO-PERI-BAC]": 1, "NA+[CCO-CYTOSOL]": 1} "L2R" ["YDHE-MONOMER"] "RXN0-2561-CPD-524/NA+//CPD-524/NA+.25." {"CPD-524[CCO-CYTOSOL]": -1, "NA+[CCO-PERI-BAC]": -1, "CPD-524[CCO-PERI-BAC]": 1, "NA+[CCO-CYTOSOL]": 1} "L2R" ["YDHE-MONOMER"] "RXN0-2561-CPD0-2556/NA+//CPD0-2556/NA+.29." {"CPD0-2556[CCO-CYTOSOL]": -1, "NA+[CCO-PERI-BAC]": -1, "CPD0-2556[CCO-PERI-BAC]": 1, "NA+[CCO-CYTOSOL]": 1} "L2R" ["YDHE-MONOMER"] -"RXN0-262" {"GTP[CCO-CYTOSOL]": -1, "CPD-8123[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "CPD-582[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 1} "L2R" ["EG11829-MONOMER"] +"RXN0-262" {"GTP[CCO-CYTOSOL]": -1, "CPD-15870[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "CPD-582[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 1} "L2R" ["EG11829-MONOMER"] "RXN0-267" {"Red-Thioredoxin[CCO-CYTOSOL]": -1, "HYDROGEN-PEROXIDE[CCO-CYTOSOL]": -1, "Ox-Thioredoxin[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 2} "L2R" ["BTUE-MONOMER"] "RXN0-267-Red-thioredoxins-1/HYDROGEN-PEROXIDE//Ox-thioredoxins-1/WATER.62." {"Red-thioredoxins-1[CCO-CYTOSOL]": -1, "HYDROGEN-PEROXIDE[CCO-CYTOSOL]": -1, "Ox-thioredoxins-1[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 2} "L2R" ["BTUE-MONOMER"] "RXN0-267-Reduced-CcmG-Proteins/HYDROGEN-PEROXIDE//Oxidized-CcmG-Proteins/WATER.70." {"Reduced-CcmG-Proteins[CCO-CYTOSOL]": -1, "HYDROGEN-PEROXIDE[CCO-CYTOSOL]": -1, "Oxidized-CcmG-Proteins[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 2} "L2R" ["BTUE-MONOMER"] @@ -2696,7 +2713,7 @@ "RXN0-3543" {"AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "AMINO-HYDROXYMETHYL-METHYL-PYR-P[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["G6246-MONOMER", "G6580-MONOMER"] "RXN0-3601" {"CARNITINE[CCO-CYTOSOL]": -1, "GAMMA-BUTYROBETAINYL-COA[CCO-CYTOSOL]": -1, "L-CARNITINYL-COA[CCO-CYTOSOL]": 1, "GAMMA-BUTYROBETAINE[CCO-CYTOSOL]": 1} "L2R" ["CARNDEHYDRA-CPLX"] "RXN0-361" {"CYTIDINE[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "D-Ribofuranose[CCO-CYTOSOL]": 1, "CYTOSINE[CCO-CYTOSOL]": 1} "L2R" ["EG11082-MONOMER", "CPLX0-7904", "CPLX0-8280"] -"RXN0-363" {"XANTHOSINE[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "D-Ribofuranose[CCO-CYTOSOL]": 1, "XANTHINE[CCO-CYTOSOL]": 1} "L2R" ["EG11082-MONOMER"] +"RXN0-363" {"XANTHOSINE[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "XANTHINE[CCO-CYTOSOL]": 1, "D-Ribofuranose[CCO-CYTOSOL]": 1} "L2R" ["EG11082-MONOMER"] "RXN0-3741[CCO-CYTOSOL]-DIMP/WATER//DEOXYINOSINE/Pi.41." {"DIMP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "DEOXYINOSINE[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-7625", "G7230-MONOMER"] "RXN0-3741[CCO-PERI-BAC]-DIMP/WATER//DEOXYINOSINE/Pi.42." {"DIMP[CCO-PERI-BAC]": -1, "WATER[CCO-PERI-BAC]": -1, "DEOXYINOSINE[CCO-PERI-BAC]": 1, "Pi[CCO-PERI-BAC]": 1} "L2R" ["USHA-MONOMER", "APHA-CPLX"] "RXN0-382" {"ATP[CCO-CYTOSOL]": -1, "CPD-1093[CCO-CYTOSOL]": -1, "DEOXYXYLULOSE-5P[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-7466"] @@ -2814,6 +2831,7 @@ "RXN0-5260-GLYCEROL-3P/UBIQUINONE-8//DIHYDROXY-ACETONE-PHOSPHATE/CPD-9956.63." {"GLYCEROL-3P[CCO-CYTOSOL]": -1, "UBIQUINONE-8[CCO-PM-BAC-NEG]": -1, "DIHYDROXY-ACETONE-PHOSPHATE[CCO-CYTOSOL]": 1, "CPD-9956[CCO-PM-BAC-NEG]": 1} "L2R" ["AERGLYC3PDEHYDROG-CPLX"] "RXN0-5264-TRIMETHYLAMINE-N-O/REDUCED-MENAQUINONE/PROTON//TRIMETHYLAMINE/CPD-9728/WATER.77." {"TRIMETHYLAMINE-N-O[CCO-PERI-BAC]": -1, "REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "PROTON[CCO-PERI-BAC]": -1, "TRIMETHYLAMINE[CCO-PERI-BAC]": 1, "CPD-9728[CCO-PM-BAC-NEG]": 1, "WATER[CCO-PERI-BAC]": 1} "L2R" ["TMAOREDUCTI-CPLX"] "RXN0-5266-CPD-9956/OXYGEN-MOLECULE/PROTON//UBIQUINONE-8/WATER/PROTON.59." {"CPD-9956[CCO-PM-BAC-NEG]": -2, "OXYGEN-MOLECULE[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -4, "UBIQUINONE-8[CCO-PM-BAC-NEG]": 2, "WATER[CCO-CYTOSOL]": 2, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["APP-UBIOX-CPLX", "CYT-D-UBIOX-CPLX"] +"RXN0-5268-CPD-9956/OXYGEN-MOLECULE/PROTON//UBIQUINONE-8/WATER/PROTON.59." {"CPD-9956[CCO-PM-BAC-NEG]": -2, "OXYGEN-MOLECULE[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -8, "UBIQUINONE-8[CCO-PM-BAC-NEG]": 2, "WATER[CCO-CYTOSOL]": 2, "PROTON[CCO-PERI-BAC]": 8} "L2R" ["CYT-O-UBIOX-CPLX"] "RXN0-5289" {"GLYCERATE[CCO-CYTOSOL]": -1, "NAD[CCO-CYTOSOL]": -1, "CPD-26279[CCO-CYTOSOL]": 1, "NADH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "BOTH" ["CPLX0-7616", "TSA-REDUCT-MONOMER"] "RXN0-5291" {"ADP[CCO-CYTOSOL]": -1, "THIAMINE-PYROPHOSPHATE[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "CPD0-1095[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1} "BOTH" ["MONOMER0-2838"] "RXN0-5292[CCO-CYTOSOL]-DCMP/WATER//DEOXYCYTIDINE/Pi.42." {"DCMP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "DEOXYCYTIDINE[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-7625"] @@ -2863,7 +2881,7 @@ "RXN0-5515" {"CTP[CCO-CYTOSOL]": -1, "2-3-4-Saturated-L-Phosphatidates[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "CDP-2-3-4-Saturated-Diacylglycerols[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 1} "L2R" ["CDPDIGLYSYN-MONOMER"] "RXN0-5522" {"EG11171-MONOMER[CCO-CYTOSOL]": -1, "CPD0-1719[CCO-CYTOSOL]": 1} "L2R" ["G6991-MONOMER"] "RXN0-6" {"FE+2[CCO-CYTOSOL]": -1, "PROTON[CCO-PERI-BAC]": -1, "FE+2[CCO-PERI-BAC]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-7641"] -"RXN0-6254" {"CTP[CCO-CYTOSOL]": -1, "CPD-8123[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "CPD0-1882[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 1} "L2R" ["G7496-MONOMER"] +"RXN0-6254" {"CTP[CCO-CYTOSOL]": -1, "CPD-15870[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "CPD-23445[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 1} "L2R" ["G7496-MONOMER"] "RXN0-6259-PROTOPORPHYRIN_IX/REDUCED-MENAQUINONE//PROTOPORPHYRINOGEN/CPD-9728.67." {"PROTOPORPHYRIN_IX[CCO-CYTOSOL]": -1, "REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -3, "PROTOPORPHYRINOGEN[CCO-CYTOSOL]": 1, "CPD-9728[CCO-PM-BAC-NEG]": 3} "R2L" ["CPLX0-7811"] "RXN0-6271" {"ATP[CCO-CYTOSOL]": -1, "G6345-MONOMER[CCI-PM-BAC-NEG-GN]": -1, "ADP[CCO-CYTOSOL]": 1, "PHOSPHO-DPIB[CCI-PM-BAC-NEG-GN]": 1} "L2R" [] "RXN0-6272" {"PHOSPHO-DPIB[CCI-PM-BAC-NEG-GN]": -1, "G6346-MONOMER[CCO-CYTOSOL]": -1, "G6345-MONOMER[CCI-PM-BAC-NEG-GN]": 1, "PHOSPHO-DPIA[CCO-CYTOSOL]": 1} "L2R" [] @@ -2980,7 +2998,7 @@ "RXN0-6998" {"23S-rRNA-adenine-2030[CCO-CYTOSOL]": -1, "S-ADENOSYLMETHIONINE[CCO-CYTOSOL]": -1, "23S-rRNA-N6-methyladenine-2030[CCO-CYTOSOL]": 1, "ADENOSYL-HOMO-CYS[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["EG12234-MONOMER"] "RXN0-6999" {"EF-P-L-lysine[CCO-CYTOSOL]": -1, "CPD0-1032[CCO-CYTOSOL]": -1, "ATP[CCO-CYTOSOL]": -1, "EF-P-lysyl-lysine[CCO-CYTOSOL]": 1, "AMP[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-7889"] "RXN0-7000" {"EF-P-lysyl-lysine[CCO-CYTOSOL]": -1, "NADPH[CCO-CYTOSOL]": -1, "OXYGEN-MOLECULE[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "EF-P-lysyl-hydroxylysine[CCO-CYTOSOL]": 1, "NADP[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["G7201-MONOMER"] -"RXN0-7003" {"EG12006-MONOMER[CCO-CYTOSOL]": -1, "MONOMER0-4457[CCO-PM-BAC-NEG]": -1, "MONOMER0-4276[CCO-CYTOSOL]": 1, "EG12007-MONOMER[CCO-PM-BAC-NEG]": 1} "BOTH" [] +"RXN0-7003" {"EG12006-MONOMER[CCO-CYTOSOL]": -1, "MONOMER0-4457[CCO-PM-BAC-NEG]": -1, "MONOMER0-4276[CCO-CYTOSOL]": 1, "CPLX0-10815[CCI-PM-BAC-NEG-GN]": 1} "BOTH" [] "RXN0-7007" {"tRNA-adenine-37[CCO-CYTOSOL]": -1, "Reduced-2Fe-2S-Ferredoxins[CCO-CYTOSOL]": -2, "S-ADENOSYLMETHIONINE[CCO-CYTOSOL]": -2, "ADENOSYL-HOMO-CYS[CCO-CYTOSOL]": 1, "MET[CCO-CYTOSOL]": 1, "CH33ADO[CCO-CYTOSOL]": 1, "tRNA-2methyladenine-37[CCO-CYTOSOL]": 1, "Oxidized-2Fe-2S-Ferredoxins[CCO-CYTOSOL]": 2} "L2R" ["EG12401-MONOMER"] "RXN0-7008-PRO/UBIQUINONE-8//L-DELTA1-PYRROLINE_5-CARBOXYLATE/CPD-9956/PROTON.67." {"PRO[CCO-CYTOSOL]": -1, "UBIQUINONE-8[CCO-PM-BAC-NEG]": -1, "L-DELTA1-PYRROLINE_5-CARBOXYLATE[CCO-CYTOSOL]": 1, "CPD-9956[CCO-PM-BAC-NEG]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["PUTA-CPLX"] "RXN0-7010" {"CPD0-2511[CCO-CYTOSOL]": -1, "GLUTATHIONE[CCO-CYTOSOL]": -1, "CPD-16720[CCO-CYTOSOL]": 1, "OXIDIZED-GLUTATHIONE[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-7984"] @@ -3026,6 +3044,7 @@ "RXN0-7079" {"CPD0-2552[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "7-METHYLGUANOSINE-5-PHOSPHATE[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["EG11438-MONOMER"] "RXN0-7080" {"CTP[CCO-CYTOSOL]": -1, "CPD-12377[CCO-CYTOSOL]": -2, "5-HYDROXY-CTP[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" [] "RXN0-7081" {"tRNA-containing-5-CarbMeAminome-2-ThioU[CCO-CYTOSOL]": -1, "Acceptor[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "tRNA-Containing-5AminoMe-2-ThioUrdines[CCO-CYTOSOL]": 1, "GLYOX[CCO-CYTOSOL]": 1, "Donor-H2[CCO-CYTOSOL]": 1} "L2R" ["G7199-MONOMER"] +"RXN0-7083" {"tRNA-2-thiouridine34[CCO-CYTOSOL]": -1, "METHYLENE-THF-GLU-N[CCO-CYTOSOL]": -1, "AMMONIUM[CCO-CYTOSOL]": -1, "GTP[CCO-CYTOSOL]": -1, "Acceptor[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "tRNA-Containing-5AminoMe-2-ThioUrdines[CCO-CYTOSOL]": 1, "DIHYDROFOLATE-GLU-N[CCO-CYTOSOL]": 1, "GDP[CCO-CYTOSOL]": 1, "Donor-H2[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-7609"] "RXN0-7084" {"EG12121-MONOMER[CCO-CYTOSOL]": -1, "PHOSPHO-ARCB717[CCO-CYTOSOL]": -1, "RSSB-P[CCO-CYTOSOL]": 1, "ARCB-CPLX[CCO-CYTOSOL]": 1} "L2R" [] "RXN0-7090" {"50S-Ribosomal-subunit-protein-L16-Arg[CCO-CYTOSOL]": -1, "2-KETOGLUTARATE[CCO-CYTOSOL]": -1, "OXYGEN-MOLECULE[CCO-CYTOSOL]": -1, "50S-Ribo-protein-L16-Hydroxylarginine[CCO-CYTOSOL]": 1, "SUC[CCO-CYTOSOL]": 1, "CARBON-DIOXIDE[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8112"] "RXN0-7092" {"NIACINAMIDE[CCO-CYTOSOL]": -1, "RIBOSE-1P[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "NICOTINAMIDE_RIBOSE[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1} "R2L" ["XANTHOSINEPHOSPHORY-CPLX"] @@ -3045,7 +3064,7 @@ "RXN0-7160" {"Protein-L-lysine[CCO-CYTOSOL]": -1, "ACETYL-COA[CCO-CYTOSOL]": -1, "CPD3O-0[CCO-CYTOSOL]": 1, "CO-A[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8189", "EG10850-MONOMER", "EG12270-MONOMER", "EG11207-MONOMER", "EG10724-MONOMER"] "RXN0-7165" {"ACETYL-COA[CCO-CYTOSOL]": -1, "SPERMIDINE[CCO-CYTOSOL]": -1, "CPD-3462[CCO-CYTOSOL]": 1, "CO-A[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["SPERMACTRAN-CPLX"] "RXN0-7166" {"PHOSPHO-ENOL-PYRUVATE[CCO-CYTOSOL]": -1, "PTSH-MONOMER[CCO-CYTOSOL]": -1, "PYRUVATE[CCO-CYTOSOL]": 1, "PTSH-PHOSPHORYLATED[CCO-CYTOSOL]": 1} "BOTH" [] -"RXN0-7167" {"5-oxyacetylU34-tRNA[CCO-CYTOSOL]": -1, "S-ADENOSYLMETHIONINE[CCO-CYTOSOL]": -1, "5-methoxycarbonylmethoxyU34-tRNA[CCO-CYTOSOL]": 1, "ADENOSYL-HOMO-CYS[CCO-CYTOSOL]": 1} "L2R" ["EG12167-MONOMER"] +"RXN0-7167" {"5-oxyacetylU34-tRNA[CCO-CYTOSOL]": -1, "S-ADENOSYLMETHIONINE[CCO-CYTOSOL]": -1, "5-methoxycarbonylmethoxyU34-tRNA[CCO-CYTOSOL]": 1, "ADENOSYL-HOMO-CYS[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-11245"] "RXN0-7168" {"5-methoxycarbonylmethoxyU34-tRNA[CCO-CYTOSOL]": -1, "S-ADENOSYLMETHIONINE[CCO-CYTOSOL]": -1, "mcmo5U34m-tRNA[CCO-CYTOSOL]": 1, "ADENOSYL-HOMO-CYS[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-7421"] "RXN0-7169" {"Hpr-pi-phospho-L-histidines[CCO-CYTOSOL]": -1, "DIHYDROXYACETONE[CCO-CYTOSOL]": -1, "Hpr-Histidine[CCO-CYTOSOL]": 1, "DIHYDROXY-ACETONE-PHOSPHATE[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-2081"] "RXN0-7173" {"CPD-8887[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GLYCOLLATE[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["EG11383-MONOMER", "CPLX0-7960"] @@ -3073,11 +3092,9 @@ "RXN0-7189-CPD0-1114//CPD0-1114.21." {"CPD0-1114[CCO-PERI-BAC]": -1, "CPD0-1114[CCO-CYTOSOL]": 1} "BOTH" ["CPLX0-7654"] "RXN0-7189-CPD0-1286//CPD0-1286.21." {"CPD0-1286[CCO-PERI-BAC]": -1, "CPD0-1286[CCO-CYTOSOL]": 1} "BOTH" ["CPLX0-7654"] "RXN0-7189-CPD0-2030//CPD0-2030.21." {"CPD0-2030[CCO-PERI-BAC]": -1, "CPD0-2030[CCO-CYTOSOL]": 1} "BOTH" ["CPLX0-7654"] -"RXN0-7189-CPD0-2134//CPD0-2134.21." {"CPD0-2134[CCO-PERI-BAC]": -1, "CPD0-2134[CCO-CYTOSOL]": 1} "BOTH" ["CPLX0-7654"] "RXN0-7189-CPD0-2170//CPD0-2170.21." {"CPD0-2170[CCO-PERI-BAC]": -1, "CPD0-2170[CCO-CYTOSOL]": 1} "BOTH" ["CPLX0-7654"] "RXN0-7189-CPD0-2174//CPD0-2174.21." {"CPD0-2174[CCO-PERI-BAC]": -1, "CPD0-2174[CCO-CYTOSOL]": 1} "BOTH" ["CPLX0-7654"] "RXN0-7189-CPD0-2204//CPD0-2204.21." {"CPD0-2204[CCO-PERI-BAC]": -1, "CPD0-2204[CCO-CYTOSOL]": 1} "BOTH" ["CPLX0-7654"] -"RXN0-7189-CPD0-2229//CPD0-2229.21." {"CPD0-2229[CCO-PERI-BAC]": -1, "CPD0-2229[CCO-CYTOSOL]": 1} "BOTH" ["CPLX0-7654"] "RXN0-7189-CPD0-2330//CPD0-2330.21." {"CPD0-2330[CCO-PERI-BAC]": -1, "CPD0-2330[CCO-CYTOSOL]": 1} "BOTH" ["CPLX0-7654"] "RXN0-7189-CPD0-2460//CPD0-2460.21." {"CPD0-2460[CCO-PERI-BAC]": -1, "CPD0-2460[CCO-CYTOSOL]": 1} "BOTH" ["CPLX0-7654"] "RXN0-7189-D-SORBITOL-6-P//D-SORBITOL-6-P.31." {"D-SORBITOL-6-P[CCO-PERI-BAC]": -1, "D-SORBITOL-6-P[CCO-CYTOSOL]": 1} "BOTH" ["CPLX0-7654"] @@ -3487,6 +3504,7 @@ "RXN0-7206-CPD-12996//CPD-12996.21." {"CPD-12996[CCO-PERI-BAC]": -1, "CPD-12996[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-1301//CPD-1301.19." {"CPD-1301[CCO-PERI-BAC]": -1, "CPD-1301[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-1302//CPD-1302.19." {"CPD-1302[CCO-PERI-BAC]": -1, "CPD-1302[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] +"RXN0-7206-CPD-13211//CPD-13211.21." {"CPD-13211[CCO-PERI-BAC]": -1, "CPD-13211[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-13594//CPD-13594.21." {"CPD-13594[CCO-PERI-BAC]": -1, "CPD-13594[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-14021//CPD-14021.21." {"CPD-14021[CCO-PERI-BAC]": -1, "CPD-14021[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-14202//CPD-14202.21." {"CPD-14202[CCO-PERI-BAC]": -1, "CPD-14202[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] @@ -3502,6 +3520,7 @@ "RXN0-7206-CPD-15391//CPD-15391.21." {"CPD-15391[CCO-PERI-BAC]": -1, "CPD-15391[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-15392//CPD-15392.21." {"CPD-15392[CCO-PERI-BAC]": -1, "CPD-15392[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-15393//CPD-15393.21." {"CPD-15393[CCO-PERI-BAC]": -1, "CPD-15393[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] +"RXN0-7206-CPD-15870//CPD-15870.21." {"CPD-15870[CCO-PERI-BAC]": -1, "CPD-15870[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-15871//CPD-15871.21." {"CPD-15871[CCO-PERI-BAC]": -1, "CPD-15871[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-15873//CPD-15873.21." {"CPD-15873[CCO-PERI-BAC]": -1, "CPD-15873[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-15874//CPD-15874.21." {"CPD-15874[CCO-PERI-BAC]": -1, "CPD-15874[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] @@ -3540,10 +3559,14 @@ "RXN0-7206-CPD-22526//CPD-22526.21." {"CPD-22526[CCO-PERI-BAC]": -1, "CPD-22526[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-22631//CPD-22631.21." {"CPD-22631[CCO-PERI-BAC]": -1, "CPD-22631[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-22690//CPD-22690.21." {"CPD-22690[CCO-PERI-BAC]": -1, "CPD-22690[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] +"RXN0-7206-CPD-23445//CPD-23445.21." {"CPD-23445[CCO-PERI-BAC]": -1, "CPD-23445[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-23449//CPD-23449.21." {"CPD-23449[CCO-PERI-BAC]": -1, "CPD-23449[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-24463//CPD-24463.21." {"CPD-24463[CCO-PERI-BAC]": -1, "CPD-24463[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] +"RXN0-7206-CPD-258//CPD-258.17." {"CPD-258[CCO-PERI-BAC]": -1, "CPD-258[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-259//CPD-259.17." {"CPD-259[CCO-PERI-BAC]": -1, "CPD-259[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-26593//CPD-26593.21." {"CPD-26593[CCO-PERI-BAC]": -1, "CPD-26593[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] +"RXN0-7206-CPD-26685//CPD-26685.21." {"CPD-26685[CCO-PERI-BAC]": -1, "CPD-26685[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] +"RXN0-7206-CPD-26686//CPD-26686.21." {"CPD-26686[CCO-PERI-BAC]": -1, "CPD-26686[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-315//CPD-315.17." {"CPD-315[CCO-PERI-BAC]": -1, "CPD-315[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-316//CPD-316.17." {"CPD-316[CCO-PERI-BAC]": -1, "CPD-316[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-3710//CPD-3710.19." {"CPD-3710[CCO-PERI-BAC]": -1, "CPD-3710[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] @@ -3625,7 +3648,6 @@ "RXN0-7206-CPD0-1668//CPD0-1668.21." {"CPD0-1668[CCO-PERI-BAC]": -1, "CPD0-1668[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD0-1699//CPD0-1699.21." {"CPD0-1699[CCO-PERI-BAC]": -1, "CPD0-1699[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD0-1718//CPD0-1718.21." {"CPD0-1718[CCO-PERI-BAC]": -1, "CPD0-1718[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] -"RXN0-7206-CPD0-1882//CPD0-1882.21." {"CPD0-1882[CCO-PERI-BAC]": -1, "CPD0-1882[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD0-2061//CPD0-2061.21." {"CPD0-2061[CCO-PERI-BAC]": -1, "CPD0-2061[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD0-2062//CPD0-2062.21." {"CPD0-2062[CCO-PERI-BAC]": -1, "CPD0-2062[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD0-2231//CPD0-2231.21." {"CPD0-2231[CCO-PERI-BAC]": -1, "CPD0-2231[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] @@ -3683,6 +3705,7 @@ "RXN0-7206-FERRIC-ENTEROBACTIN-COMPLEX//FERRIC-ENTEROBACTIN-COMPLEX.57." {"FERRIC-ENTEROBACTIN-COMPLEX[CCO-PERI-BAC]": -1, "FERRIC-ENTEROBACTIN-COMPLEX[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-FERULIC-ACID//FERULIC-ACID.27." {"FERULIC-ACID[CCO-PERI-BAC]": -1, "FERULIC-ACID[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-FMN//FMN.9." {"FMN[CCO-PERI-BAC]": -1, "FMN[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] +"RXN0-7206-FMNH//FMNH.11." {"FMNH[CCO-PERI-BAC]": -1, "FMNH[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-FMNH2//FMNH2.13." {"FMNH2[CCO-PERI-BAC]": -1, "FMNH2[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-GMP//GMP.9." {"GMP[CCO-PERI-BAC]": -1, "GMP[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-GTP//GTP.9." {"GTP[CCO-PERI-BAC]": -1, "GTP[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] @@ -4148,6 +4171,7 @@ "RXN0-7210-CPD-1181//CPD-1181.19." {"CPD-1181[CCO-PERI-BAC]": -1, "CPD-1181[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7210-CPD-12284//CPD-12284.21." {"CPD-12284[CCO-PERI-BAC]": -1, "CPD-12284[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7210-CPD-12773//CPD-12773.21." {"CPD-12773[CCO-PERI-BAC]": -1, "CPD-12773[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] +"RXN0-7210-CPD-13211//CPD-13211.21." {"CPD-13211[CCO-PERI-BAC]": -1, "CPD-13211[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7210-CPD-13918//CPD-13918.21." {"CPD-13918[CCO-PERI-BAC]": -1, "CPD-13918[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7210-CPD-13962//CPD-13962.21." {"CPD-13962[CCO-PERI-BAC]": -1, "CPD-13962[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7210-CPD-13973//CPD-13973.21." {"CPD-13973[CCO-PERI-BAC]": -1, "CPD-13973[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] @@ -4169,6 +4193,7 @@ "RXN0-7210-CPD-21357//CPD-21357.21." {"CPD-21357[CCO-PERI-BAC]": -1, "CPD-21357[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7210-CPD-21359//CPD-21359.21." {"CPD-21359[CCO-PERI-BAC]": -1, "CPD-21359[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7210-CPD-21605//CPD-21605.21." {"CPD-21605[CCO-PERI-BAC]": -1, "CPD-21605[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] +"RXN0-7210-CPD-21655//CPD-21655.21." {"CPD-21655[CCO-PERI-BAC]": -1, "CPD-21655[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7210-CPD-2209//CPD-2209.19." {"CPD-2209[CCO-PERI-BAC]": -1, "CPD-2209[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7210-CPD-22525//CPD-22525.21." {"CPD-22525[CCO-PERI-BAC]": -1, "CPD-22525[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7210-CPD-22526//CPD-22526.21." {"CPD-22526[CCO-PERI-BAC]": -1, "CPD-22526[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] @@ -4503,8 +4528,8 @@ "RXN0-7245-CPD-9227//CPD-9227.19." {"CPD-9227[CCO-PERI-BAC]": -1, "CPD-9227[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7245-CPD-9228//CPD-9228.19." {"CPD-9228[CCO-PERI-BAC]": -1, "CPD-9228[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7245-CPD-9229//CPD-9229.19." {"CPD-9229[CCO-PERI-BAC]": -1, "CPD-9229[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] -"RXN0-7245-CPD-9230//CPD-9230.19." {"CPD-9230[CCO-PERI-BAC]": -1, "CPD-9230[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7245-CPD-9231//CPD-9231.19." {"CPD-9231[CCO-PERI-BAC]": -1, "CPD-9231[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] +"RXN0-7245-CPD-9234//CPD-9234.19." {"CPD-9234[CCO-PERI-BAC]": -1, "CPD-9234[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7245-CPD-9235//CPD-9235.19." {"CPD-9235[CCO-PERI-BAC]": -1, "CPD-9235[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7245-CPD0-1366//CPD0-1366.21." {"CPD0-1366[CCO-PERI-BAC]": -1, "CPD0-1366[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7245-CPD0-2068//CPD0-2068.21." {"CPD0-2068[CCO-PERI-BAC]": -1, "CPD0-2068[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] @@ -4679,7 +4704,7 @@ "RXN0-7319-CPD-381/DEMETHYLMENAQUINONE//2-KETOGLUTARATE/CPD-12115.55." {"CPD-381[CCO-CYTOSOL]": -1, "DEMETHYLMENAQUINONE[CCO-CYTOSOL]": -1, "2-KETOGLUTARATE[CCO-CYTOSOL]": 1, "CPD-12115[CCO-CYTOSOL]": 1} "L2R" ["EG12387-MONOMER"] "RXN0-7319-CPD-381/UBIQUINONE-8//2-KETOGLUTARATE/CPD-9956.47." {"CPD-381[CCO-CYTOSOL]": -1, "UBIQUINONE-8[CCO-CYTOSOL]": -1, "2-KETOGLUTARATE[CCO-CYTOSOL]": 1, "CPD-9956[CCO-CYTOSOL]": 1} "L2R" ["EG12387-MONOMER"] "RXN0-7325" {"COPROPORPHYRINOGEN_III[CCO-CYTOSOL]": -1, "HYDROGEN-PEROXIDE[CCO-CYTOSOL]": -3, "COPROPORPHYRIN_III[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 6} "L2R" ["G7266-MONOMER"] -"RXN0-7326" {"EG12007-MONOMER[CCO-PM-BAC-NEG]": -1, "ATP[CCO-CYTOSOL]": -1, "MONOMER0-4457[CCO-PM-BAC-NEG]": 1, "ADP[CCO-CYTOSOL]": 1} "L2R" [] +"RXN0-7326" {"ATP[CCO-CYTOSOL]": -1, "CPLX0-10815[CCI-PM-BAC-NEG-GN]": -1, "MONOMER0-4457[CCO-PM-BAC-NEG]": 1, "ADP[CCO-CYTOSOL]": 1} "L2R" [] "RXN0-7329" {"PHOSPHO-PHOB[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "PHOB-MONOMER[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["PHOR-CPLX"] "RXN0-7332" {"PHOSPHO-ARCB-ASP[CCI-PM-BAC-NEG-GN]": -1, "ARCB-CPLX[CCI-PM-BAC-NEG-GN]": 1, "Pi[NIL]": 1} "L2R" [] "RXN0-7333" {"ARCA-MONOMER[CCO-CYTOSOL]": -1, "PHOSPHO-ARCB717[CCO-PM-BAC-NEG]": -1, "PHOSPHO-ARCA[CCO-CYTOSOL]": 1, "ARCB-CPLX[CCO-PM-BAC-NEG]": 1} "BOTH" [] @@ -4778,6 +4803,9 @@ "RXN0-7444" {"MONOMER0-160[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "MONOMER0-4565[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-10342"] "RXN0-745" {"FORMATE[CCO-CYTOSOL]": -1, "ATP[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "CARBON-DIOXIDE[CCO-CYTOSOL]": 1, "DATP[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["RIBONUCLEOSIDE-TRIP-REDUCT-CPLX"] "RXN0-7450" {"MONOMER0-4152[CCO-CYTOSOL]": -1, "Protein-Dithiols[CCO-CYTOSOL]": -1, "DISULFOXRED-MONOMER[CCO-CYTOSOL]": 1, "Protein-Disulfides[CCO-CYTOSOL]": 1} "L2R" ["DISULFOXRED-MONOMER"] +"RXN0-7453-an-oxidized-SoxR-protein/NADH//a-reduced-SoxR-protein/NAD/PROTON.65." {"an-oxidized-SoxR-protein[CCO-CYTOSOL]": -2, "NADH[CCO-CYTOSOL]": -1, "a-reduced-SoxR-protein[CCO-CYTOSOL]": 2, "NAD[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-10853"] +"RXN0-7453-an-oxidized-SoxR-protein/NADPH//a-reduced-SoxR-protein/NADP/PROTON.67." {"an-oxidized-SoxR-protein[CCO-CYTOSOL]": -2, "NADPH[CCO-CYTOSOL]": -1, "a-reduced-SoxR-protein[CCO-CYTOSOL]": 2, "NADP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-10853"] +"RXN0-7454" {"CcmE-Protein-Heme[CCI-PERI-BAC-GN]": -1, "Donor-H1[CCI-PERI-BAC-GN]": -1, "CcmE-Protein-Heme-Ox[CCI-PERI-BAC-GN]": 1, "Acceptor[CCI-PERI-BAC-GN]": 1, "PROTON[CCI-PERI-BAC-GN]": 1} "L2R" ["EG12054-MONOMER"] "RXN0-746" {"FORMATE[CCO-CYTOSOL]": -1, "GTP[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "DGTP[CCO-CYTOSOL]": 1, "CARBON-DIOXIDE[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["RIBONUCLEOSIDE-TRIP-REDUCT-CPLX"] "RXN0-747" {"DADP[CCO-CYTOSOL]": -1, "Oxidized-NrdH-Proteins[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "ADP[CCO-CYTOSOL]": 1, "Reduced-NrdH-Proteins[CCO-CYTOSOL]": 1} "R2L" ["RIBONUCLEOSIDE-DIP-REDUCTII-CPLX"] "RXN0-748" {"DGDP[CCO-CYTOSOL]": -1, "Oxidized-NrdH-Proteins[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GDP[CCO-CYTOSOL]": 1, "Reduced-NrdH-Proteins[CCO-CYTOSOL]": 1} "R2L" ["RIBONUCLEOSIDE-DIP-REDUCTII-CPLX"] @@ -5037,6 +5065,8 @@ "TRANS-RXN-157-Hpr-pi-phospho-L-histidines/Glucopyranose//ALPHA-GLC-6-P/Hpr-Histidine.71." {"Hpr-pi-phospho-L-histidines[CCO-CYTOSOL]": -1, "Glucopyranose[CCO-PERI-BAC]": -1, "ALPHA-GLC-6-P[CCO-CYTOSOL]": 1, "Hpr-Histidine[CCO-CYTOSOL]": 1} "L2R" ["CPLX-154", "CPLX-165", "CPLX-157"] "TRANS-RXN-157-Hpr-pi-phospho-L-histidines/Glucopyranose//D-glucopyranose-6-phosphate/Hpr-Histidine.85." {"Hpr-pi-phospho-L-histidines[CCO-CYTOSOL]": -1, "Glucopyranose[CCO-PERI-BAC]": -1, "D-glucopyranose-6-phosphate[CCO-CYTOSOL]": 1, "Hpr-Histidine[CCO-CYTOSOL]": 1} "L2R" ["CPLX-154", "CPLX-165", "CPLX-157"] "TRANS-RXN-157-Hpr-pi-phospho-L-histidines/Glucopyranose//GLC-6-P/Hpr-Histidine.65." {"Hpr-pi-phospho-L-histidines[CCO-CYTOSOL]": -1, "Glucopyranose[CCO-PERI-BAC]": -1, "GLC-6-P[CCO-CYTOSOL]": 1, "Hpr-Histidine[CCO-CYTOSOL]": 1} "L2R" ["CPLX-154", "CPLX-165", "CPLX-157"] +"TRANS-RXN-1570" {"CPD0-2583[CCO-PERI-BAC]": -1, "PROTON[CCO-PERI-BAC]": -1, "CPD0-2583[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["AMPG-MONOMER"] +"TRANS-RXN-1571" {"CPD-26748[CCO-PERI-BAC]": -1, "PROTON[CCO-PERI-BAC]": -1, "CPD-26748[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["AMPG-MONOMER"] "TRANS-RXN-158" {"Fructofuranose[CCO-PERI-BAC]": -1, "PTSI-PHOSPHORYLATED[CCO-CYTOSOL]": -1, "D-fructofuranose-1-phosphate[CCO-CYTOSOL]": 1, "PTSI-MONOMER[CCO-CYTOSOL]": 1} "L2R" ["CPLX-158"] "TRANS-RXN-158-BETA-D-FRUCTOSE/PTSI-PHOSPHORYLATED//CPD-16154/PTSI-MONOMER.60." {"BETA-D-FRUCTOSE[CCO-PERI-BAC]": -1, "PTSI-PHOSPHORYLATED[CCO-CYTOSOL]": -1, "CPD-16154[CCO-CYTOSOL]": 1, "PTSI-MONOMER[CCO-CYTOSOL]": 1} "L2R" ["CPLX-158"] "TRANS-RXN-158-BETA-D-FRUCTOSE/PTSI-PHOSPHORYLATED//D-fructofuranose-1-phosphate/PTSI-MONOMER.79." {"BETA-D-FRUCTOSE[CCO-PERI-BAC]": -1, "PTSI-PHOSPHORYLATED[CCO-CYTOSOL]": -1, "D-fructofuranose-1-phosphate[CCO-CYTOSOL]": 1, "PTSI-MONOMER[CCO-CYTOSOL]": 1} "L2R" ["CPLX-158"] @@ -5183,8 +5213,10 @@ "TRANS-RXN-292" {"LI+[CCO-CYTOSOL]": -1, "PROTON[CCO-PERI-BAC]": -2, "LI+[CCO-PERI-BAC]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" ["CPLX0-7629"] "TRANS-RXN-294" {"2-ACYL-GPE[CCO-PERI-BAC]": -1, "2-ACYL-GPE[CCO-CYTOSOL]": 1} "L2R" ["EG12455-MONOMER"] "TRANS-RXN-295-CPD-8363//CPD-8363.19." {"CPD-8363[CCO-PERI-BAC]": -1, "CPD-8363[CCO-CYTOSOL]": 1} "L2R" ["EG12455-MONOMER"] +"TRANS-RXN-295-CPD0-2134//CPD0-2134.21." {"CPD0-2134[CCO-PERI-BAC]": -1, "CPD0-2134[CCO-CYTOSOL]": 1} "L2R" ["EG12455-MONOMER"] "TRANS-RXN-295-CPD0-2173//CPD0-2173.21." {"CPD0-2173[CCO-PERI-BAC]": -1, "CPD0-2173[CCO-CYTOSOL]": 1} "L2R" ["EG12455-MONOMER"] "TRANS-RXN-295-CPD0-2207//CPD0-2207.21." {"CPD0-2207[CCO-PERI-BAC]": -1, "CPD0-2207[CCO-CYTOSOL]": 1} "L2R" ["EG12455-MONOMER"] +"TRANS-RXN-295-CPD0-2229//CPD0-2229.21." {"CPD0-2229[CCO-PERI-BAC]": -1, "CPD0-2229[CCO-CYTOSOL]": 1} "L2R" ["EG12455-MONOMER"] "TRANS-RXN-296" {"CPD-20903[CCO-PERI-BAC]": -1, "ATP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD-20903[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ABC-5-CPLX"] "TRANS-RXN-297" {"CPD0-621[CCO-PERI-BAC]": -1, "ATP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD0-621[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ABC-11-CPLX"] "TRANS-RXN-298" {"CPD0-2241[CCO-PERI-BAC]": -1, "ATP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD0-2241[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ABC-11-CPLX"] @@ -5305,8 +5337,8 @@ "TRANS-RXN-380-CPD-9227//CPD-9227.19." {"CPD-9227[CCO-EXTRACELLULAR]": -1, "CPD-9227[CCO-PERI-BAC]": 1} "BOTH" ["CPLX0-7534", "CPLX0-7533", "CPLX0-7530"] "TRANS-RXN-380-CPD-9228//CPD-9228.19." {"CPD-9228[CCO-EXTRACELLULAR]": -1, "CPD-9228[CCO-PERI-BAC]": 1} "BOTH" ["CPLX0-7534", "CPLX0-7533", "CPLX0-7530"] "TRANS-RXN-380-CPD-9229//CPD-9229.19." {"CPD-9229[CCO-EXTRACELLULAR]": -1, "CPD-9229[CCO-PERI-BAC]": 1} "BOTH" ["CPLX0-7534", "CPLX0-7533", "CPLX0-7530"] -"TRANS-RXN-380-CPD-9230//CPD-9230.19." {"CPD-9230[CCO-EXTRACELLULAR]": -1, "CPD-9230[CCO-PERI-BAC]": 1} "BOTH" ["CPLX0-7534", "CPLX0-7533", "CPLX0-7530"] "TRANS-RXN-380-CPD-9231//CPD-9231.19." {"CPD-9231[CCO-EXTRACELLULAR]": -1, "CPD-9231[CCO-PERI-BAC]": 1} "BOTH" ["CPLX0-7534", "CPLX0-7533", "CPLX0-7530"] +"TRANS-RXN-380-CPD-9234//CPD-9234.19." {"CPD-9234[CCO-EXTRACELLULAR]": -1, "CPD-9234[CCO-PERI-BAC]": 1} "BOTH" ["CPLX0-7534", "CPLX0-7533", "CPLX0-7530"] "TRANS-RXN-380-CPD-9235//CPD-9235.19." {"CPD-9235[CCO-EXTRACELLULAR]": -1, "CPD-9235[CCO-PERI-BAC]": 1} "BOTH" ["CPLX0-7534", "CPLX0-7533", "CPLX0-7530"] "TRANS-RXN-380-CPD0-2068//CPD0-2068.21." {"CPD0-2068[CCO-EXTRACELLULAR]": -1, "CPD0-2068[CCO-PERI-BAC]": 1} "BOTH" ["CPLX0-7534", "CPLX0-7533", "CPLX0-7530"] "TRANS-RXN-380-CPD0-2597//CPD0-2597.21." {"CPD0-2597[CCO-EXTRACELLULAR]": -1, "CPD0-2597[CCO-PERI-BAC]": 1} "BOTH" ["CPLX0-7534", "CPLX0-7533", "CPLX0-7530"] @@ -5508,6 +5540,7 @@ "TRANS-RXN0-265-CPD-26481//CPD-26481.21." {"CPD-26481[CCO-CYTOSOL]": -1, "CPD-26481[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] "TRANS-RXN0-265-CPD-26482//CPD-26482.21." {"CPD-26482[CCO-CYTOSOL]": -1, "CPD-26482[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] "TRANS-RXN0-265-CPD-26483//CPD-26483.21." {"CPD-26483[CCO-CYTOSOL]": -1, "CPD-26483[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] +"TRANS-RXN0-265-CPD-26731//CPD-26731.21." {"CPD-26731[CCO-CYTOSOL]": -1, "CPD-26731[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] "TRANS-RXN0-265-CPD-298//CPD-298.17." {"CPD-298[CCO-CYTOSOL]": -1, "CPD-298[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] "TRANS-RXN0-265-CPD-302//CPD-302.17." {"CPD-302[CCO-CYTOSOL]": -1, "CPD-302[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] "TRANS-RXN0-265-CPD-306//CPD-306.17." {"CPD-306[CCO-CYTOSOL]": -1, "CPD-306[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] @@ -5592,7 +5625,6 @@ "TRANS-RXN0-265-D-TYROSINE//D-TYROSINE.23." {"D-TYROSINE[CCO-CYTOSOL]": -1, "D-TYROSINE[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] "TRANS-RXN0-265-DIMETHYL-GLYCINE//DIMETHYL-GLYCINE.35." {"DIMETHYL-GLYCINE[CCO-CYTOSOL]": -1, "DIMETHYL-GLYCINE[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] "TRANS-RXN0-265-ETHIONINE//ETHIONINE.21." {"ETHIONINE[CCO-CYTOSOL]": -1, "ETHIONINE[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] -"TRANS-RXN0-265-FRUCTOSEGLYCINE//FRUCTOSEGLYCINE.33." {"FRUCTOSEGLYCINE[CCO-CYTOSOL]": -1, "FRUCTOSEGLYCINE[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] "TRANS-RXN0-265-FRUCTOSELYSINE-6-PHOSPHATE//FRUCTOSELYSINE-6-PHOSPHATE.55." {"FRUCTOSELYSINE-6-PHOSPHATE[CCO-CYTOSOL]": -1, "FRUCTOSELYSINE-6-PHOSPHATE[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] "TRANS-RXN0-265-FRUCTOSELYSINE//FRUCTOSELYSINE.31." {"FRUCTOSELYSINE[CCO-CYTOSOL]": -1, "FRUCTOSELYSINE[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] "TRANS-RXN0-265-GLN//GLN.9." {"GLN[CCO-CYTOSOL]": -1, "GLN[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] @@ -5662,7 +5694,7 @@ "TRANS-RXN0-267-CPD0-2651/PROTON//CPD0-2651/PROTON.35." {"CPD0-2651[CCO-PERI-BAC]": -1, "PROTON[CCO-PERI-BAC]": -1, "CPD0-2651[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["YJDL-MONOMER", "YHIP-MONOMER", "B1634-MONOMER"] "TRANS-RXN0-267-GLUTATHIONE/PROTON//GLUTATHIONE/PROTON.39." {"GLUTATHIONE[CCO-PERI-BAC]": -1, "PROTON[CCO-PERI-BAC]": -1, "GLUTATHIONE[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["YJDL-MONOMER", "YHIP-MONOMER", "B1634-MONOMER"] "TRANS-RXN0-267-L-ALA-GAMMA-D-GLU-DAP/PROTON//L-ALA-GAMMA-D-GLU-DAP/PROTON.59." {"L-ALA-GAMMA-D-GLU-DAP[CCO-PERI-BAC]": -1, "PROTON[CCO-PERI-BAC]": -1, "L-ALA-GAMMA-D-GLU-DAP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["YJDL-MONOMER", "YHIP-MONOMER", "B1634-MONOMER"] -"TRANS-RXN0-268" {"ATP[CCO-CYTOSOL]": -1, "L-ALA-GAMMA-D-GLU-DAP[CCO-PERI-BAC]": -1, "WATER[CCO-CYTOSOL]": -1, "L-ALA-GAMMA-D-GLU-DAP[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-3970", "ABC-22-CPLX", "ABC-41-CPLX"] +"TRANS-RXN0-268" {"ATP[CCO-CYTOSOL]": -1, "L-ALA-GAMMA-D-GLU-DAP[CCO-PERI-BAC]": -1, "WATER[CCO-CYTOSOL]": -1, "L-ALA-GAMMA-D-GLU-DAP[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-3970"] "TRANS-RXN0-269" {"VAL[CCO-CYTOSOL]": -1, "VAL[CCO-PERI-BAC]": 1} "L2R" ["CPLX0-7684", "EG12713-MONOMER"] "TRANS-RXN0-270" {"LEU[CCO-CYTOSOL]": -1, "PROTON[CCO-PERI-BAC]": -1, "LEU[CCO-PERI-BAC]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["B4141-MONOMER", "G6984-MONOMER"] "TRANS-RXN0-272" {"CPD-195[CCO-PERI-BAC]": -1, "CPD-195[CCO-CYTOSOL]": 1} "L2R" [] @@ -5894,11 +5926,9 @@ "TRANS-RXN0-573-CPD-18406/ATP/WATER//CPD-18406/ADP/Pi/PROTON.45." {"CPD-18406[CCO-PERI-BAC]": -1, "ATP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD-18406[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ABC-34-CPLX"] "TRANS-RXN0-573-CPD-8260/ATP/WATER//CPD-8260/ADP/Pi/PROTON.43." {"CPD-8260[CCO-PERI-BAC]": -1, "ATP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD-8260[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ABC-34-CPLX"] "TRANS-RXN0-573-CPD0-2030/ATP/WATER//CPD0-2030/ADP/Pi/PROTON.45." {"CPD0-2030[CCO-PERI-BAC]": -1, "ATP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD0-2030[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ABC-34-CPLX"] -"TRANS-RXN0-573-CPD0-2134/ATP/WATER//CPD0-2134/ADP/Pi/PROTON.45." {"CPD0-2134[CCO-PERI-BAC]": -1, "ATP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD0-2134[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ABC-34-CPLX"] "TRANS-RXN0-573-CPD0-2170/ATP/WATER//CPD0-2170/ADP/Pi/PROTON.45." {"CPD0-2170[CCO-PERI-BAC]": -1, "ATP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD0-2170[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ABC-34-CPLX"] "TRANS-RXN0-573-CPD0-2174/ATP/WATER//CPD0-2174/ADP/Pi/PROTON.45." {"CPD0-2174[CCO-PERI-BAC]": -1, "ATP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD0-2174[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ABC-34-CPLX"] "TRANS-RXN0-573-CPD0-2204/ATP/WATER//CPD0-2204/ADP/Pi/PROTON.45." {"CPD0-2204[CCO-PERI-BAC]": -1, "ATP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD0-2204[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ABC-34-CPLX"] -"TRANS-RXN0-573-CPD0-2229/ATP/WATER//CPD0-2229/ADP/Pi/PROTON.45." {"CPD0-2229[CCO-PERI-BAC]": -1, "ATP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD0-2229[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ABC-34-CPLX"] "TRANS-RXN0-573-CPD0-2330/ATP/WATER//CPD0-2330/ADP/Pi/PROTON.45." {"CPD0-2330[CCO-PERI-BAC]": -1, "ATP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD0-2330[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ABC-34-CPLX"] "TRANS-RXN0-573-GLYCEROL-3P/ATP/WATER//GLYCEROL-3P/ADP/Pi/PROTON.49." {"GLYCEROL-3P[CCO-PERI-BAC]": -1, "ATP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GLYCEROL-3P[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ABC-34-CPLX"] "TRANS-RXN0-573-GLYCEROPHOSPHOGLYCEROL/ATP/WATER//GLYCEROPHOSPHOGLYCEROL/ADP/Pi/PROTON.71." {"GLYCEROPHOSPHOGLYCEROL[CCO-PERI-BAC]": -1, "ATP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GLYCEROPHOSPHOGLYCEROL[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ABC-34-CPLX"] @@ -6182,11 +6212,9 @@ "TRANS-RXN0-608-CPD0-1114//CPD0-1114.21." {"CPD0-1114[CCO-PERI-BAC]": -1, "CPD0-1114[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-608-CPD0-1286//CPD0-1286.21." {"CPD0-1286[CCO-PERI-BAC]": -1, "CPD0-1286[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-608-CPD0-2030//CPD0-2030.21." {"CPD0-2030[CCO-PERI-BAC]": -1, "CPD0-2030[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] -"TRANS-RXN0-608-CPD0-2134//CPD0-2134.21." {"CPD0-2134[CCO-PERI-BAC]": -1, "CPD0-2134[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-608-CPD0-2170//CPD0-2170.21." {"CPD0-2170[CCO-PERI-BAC]": -1, "CPD0-2170[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-608-CPD0-2174//CPD0-2174.21." {"CPD0-2174[CCO-PERI-BAC]": -1, "CPD0-2174[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-608-CPD0-2204//CPD0-2204.21." {"CPD0-2204[CCO-PERI-BAC]": -1, "CPD0-2204[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] -"TRANS-RXN0-608-CPD0-2229//CPD0-2229.21." {"CPD0-2229[CCO-PERI-BAC]": -1, "CPD0-2229[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-608-CPD0-2330//CPD0-2330.21." {"CPD0-2330[CCO-PERI-BAC]": -1, "CPD0-2330[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-608-CPD0-2460//CPD0-2460.21." {"CPD0-2460[CCO-PERI-BAC]": -1, "CPD0-2460[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-608-D-SORBITOL-6-P//D-SORBITOL-6-P.31." {"D-SORBITOL-6-P[CCO-PERI-BAC]": -1, "D-SORBITOL-6-P[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] @@ -6317,6 +6345,7 @@ "TRANS-RXN0-612-CPD-26481//CPD-26481.21." {"CPD-26481[CCO-PERI-BAC]": -1, "CPD-26481[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-612-CPD-26482//CPD-26482.21." {"CPD-26482[CCO-PERI-BAC]": -1, "CPD-26482[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-612-CPD-26483//CPD-26483.21." {"CPD-26483[CCO-PERI-BAC]": -1, "CPD-26483[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] +"TRANS-RXN0-612-CPD-26731//CPD-26731.21." {"CPD-26731[CCO-PERI-BAC]": -1, "CPD-26731[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-612-CPD-298//CPD-298.17." {"CPD-298[CCO-PERI-BAC]": -1, "CPD-298[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-612-CPD-302//CPD-302.17." {"CPD-302[CCO-PERI-BAC]": -1, "CPD-302[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-612-CPD-306//CPD-306.17." {"CPD-306[CCO-PERI-BAC]": -1, "CPD-306[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] @@ -6401,7 +6430,6 @@ "TRANS-RXN0-612-D-TYROSINE//D-TYROSINE.23." {"D-TYROSINE[CCO-PERI-BAC]": -1, "D-TYROSINE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-612-DIMETHYL-GLYCINE//DIMETHYL-GLYCINE.35." {"DIMETHYL-GLYCINE[CCO-PERI-BAC]": -1, "DIMETHYL-GLYCINE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-612-ETHIONINE//ETHIONINE.21." {"ETHIONINE[CCO-PERI-BAC]": -1, "ETHIONINE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] -"TRANS-RXN0-612-FRUCTOSEGLYCINE//FRUCTOSEGLYCINE.33." {"FRUCTOSEGLYCINE[CCO-PERI-BAC]": -1, "FRUCTOSEGLYCINE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-612-FRUCTOSELYSINE-6-PHOSPHATE//FRUCTOSELYSINE-6-PHOSPHATE.55." {"FRUCTOSELYSINE-6-PHOSPHATE[CCO-PERI-BAC]": -1, "FRUCTOSELYSINE-6-PHOSPHATE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-612-FRUCTOSELYSINE//FRUCTOSELYSINE.31." {"FRUCTOSELYSINE[CCO-PERI-BAC]": -1, "FRUCTOSELYSINE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-612-GLN//GLN.9." {"GLN[CCO-PERI-BAC]": -1, "GLN[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] @@ -6588,7 +6616,7 @@ "VAGL-RXN" {"5-AMINOPENTANOATE[CCO-CYTOSOL]": -1, "2-KETOGLUTARATE[CCO-CYTOSOL]": -1, "GLT[CCO-CYTOSOL]": 1, "CPD-280[CCO-CYTOSOL]": 1} "BOTH" ["GABATRANSAM-CPLX", "G6646-MONOMER"] "VALINE-PYRUVATE-AMINOTRANSFER-RXN" {"PYRUVATE[CCO-CYTOSOL]": -1, "VAL[CCO-CYTOSOL]": -1, "L-ALPHA-ALANINE[CCO-CYTOSOL]": 1, "2-KETO-ISOVALERATE[CCO-CYTOSOL]": 1} "BOTH" ["VALINE-PYRUVATE-AMINOTRANSFER-MONOMER"] "XANPRIBOSYLTRAN-RXN" {"XANTHOSINE-5-PHOSPHATE[CCO-CYTOSOL]": -1, "PPI[CCO-CYTOSOL]": -1, "XANTHINE[CCO-CYTOSOL]": 1, "PRPP[CCO-CYTOSOL]": 1} "R2L" ["GPT-CPLX"] -"XANTHOSINEPHOSPHORY-RXN" {"XANTHOSINE[CCO-CYTOSOL]": -1, "Pi[CCO-CYTOSOL]": -1, "RIBOSE-1P[CCO-CYTOSOL]": 1, "XANTHINE[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8619", "XANTHOSINEPHOSPHORY-CPLX"] +"XANTHOSINEPHOSPHORY-RXN" {"XANTHOSINE[CCO-CYTOSOL]": -1, "Pi[CCO-CYTOSOL]": -1, "XANTHINE[CCO-CYTOSOL]": 1, "RIBOSE-1P[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8619", "XANTHOSINEPHOSPHORY-CPLX", "DEOD-CPLX"] "XYLISOM-RXN" {"CPD-25028[CCO-CYTOSOL]": -1, "CPD-24961[CCO-CYTOSOL]": 1} "BOTH" ["XYLISOM-CPLX"] "XYLONATE-DEHYDRATASE-RXN" {"D-XYLONATE[CCO-CYTOSOL]": -1, "2-DH-3-DO-D-ARABINONATE[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["G6141-MONOMER", "G7910-MONOMER"] "XYLULOKIN-RXN-CPD-24961/ATP//XYLULOSE-5-PHOSPHATE/ADP/PROTON.47." {"CPD-24961[CCO-CYTOSOL]": -1, "ATP[CCO-CYTOSOL]": -1, "XYLULOSE-5-PHOSPHATE[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-7466"] diff --git a/reconstruction/ecoli/flat/metabolic_reactions_removed.tsv b/reconstruction/ecoli/flat/metabolic_reactions_removed.tsv index 9abde1954..a8ab8477d 100644 --- a/reconstruction/ecoli/flat/metabolic_reactions_removed.tsv +++ b/reconstruction/ecoli/flat/metabolic_reactions_removed.tsv @@ -3,5 +3,4 @@ "RXN0-6418-GLC//GLC.9." "Reactant and product are identical." "N-ACETYLGLUCOSAMINE-KINASE-RXN-N-acetyl-D-glucosamine/ATP//CPD-16168/ADP/PROTON.49." "Identical reaction with N-ACETYL-D-GLUCOSAMINE exists." "RXN-18678" "Undetermined stoichiometry." -"TRANS-RXN0-275" "Reactant and product are identical." "TRANS-RXN0-507" "Reactant and product are identical." diff --git a/reconstruction/ecoli/flat/metabolites.tsv b/reconstruction/ecoli/flat/metabolites.tsv index 748654f3e..6c88cec8e 100644 --- a/reconstruction/ecoli/flat/metabolites.tsv +++ b/reconstruction/ecoli/flat/metabolites.tsv @@ -1,7 +1,7 @@ # Organism: Escherichia coli K-12 substr. MG1655 # Database: EcoCyc -# Version: 28.0 -# Date and time generated: October 30, 2023, 10:06:52 +# Version: 28.1 +# Date and time generated: March 7, 2024, 13:56:19 "id" "common_name" "synonyms" "chemical_formula" "mw" "molecular_charge" "_smiles" "--TRANS-ACENAPHTHENE-12-DIOL" "(+/-)-trans-acenaphthene-1,2-diol" ["trans-1,2-acenaphthylene glycol"] "C12H10O2" 186.21 0 "c2(cc1(cccc3(c1c(c2)[C@@H]([C@H]3O)O)))" "1-2-Beta-D-Glucans" "a 1,2-β-D-glucan" [] null null 0 "C(O)[C@H]7(O[C@@H](O)[C@H](O[C@@H]6(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](O[C@H]5([C@H](O[C@@H]4(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](O[C@H]3([C@H](O[C@@H]2(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](O[C@H]1([C@H](O[R])[C@@H](O)[C@H](O)[C@@H](CO)O1))2))[C@@H](O)[C@H](O)[C@@H](CO)O3))4))[C@@H](O)[C@H](O)[C@@H](CO)O5))6))[C@@H](O)[C@H](O)7)" @@ -33,9 +33,9 @@ "1-Acyl-sn-glycero-3-phosphocholines" "a 1-acyl-2-lyso-sn-glycero-3-phosphocholine" [] null null 0 "C[N+](C)(C)CCOP([O-])(=O)OC[C@H](O)COC(=O)[R]" "1-Acyl-sn-glycerols" "a 1-acyl-sn-glycerol" [] null null 0 "C(O)[C@@H](COC(=O)[R])O" "1-Alkenes" "a 1-alkene" ["an α alkene"] null null 0 "C=C[R]" -"1-ALKENYL-2-ACYLGLYCEROL" "a 2-acyl-1-Z-alk-1-enyl-sn-glycerol" ["a (Z) 2-acyl1-alkenyl-sn-glycerol"] null null 0 "C(/[R1])=C\OC[C@@H](OC([R2])=O)CO" -"1-Alkenyl-phosphoglycerol" "a 1-O-(alk-1-enyl)-sn-3-phosphoglycerol" ["a 1-alkenylphosphoglycerol"] null null -2 "C(/[R])=C\OC[C@H](COP([O-])(=O)[O-])O" -"1-Alkenylglycerophosphoethanolamines" "a 1-O-(alk-1-enyl)-sn-glycero-3-phosphoethanolamine" ["a 1-alkenylglycerophosphoethanolamine"] null null 0 "C(/[R1])=C\OC[C@H](COP(OCC[NH3+])(=O)[O-])O" +"1-ALKENYL-2-ACYLGLYCEROL" "a 2-acyl-1-O-(1Z-alk-1-enyl)-sn-glycerol" ["a (Z) 2-acyl1-alkenyl-sn-glycerol"] null null 0 "C(\[R1])=C\OC[C@@H](OC([R2])=O)CO" +"1-Alkenyl-phosphoglycerol" "a 1-O-(1Z-alk-1-enyl)-sn-3-phosphoglycerol" ["a 1Z-alkenylphosphoglycerol"] null null -2 "C(\[R])=C\OC[C@H](COP([O-])(=O)[O-])O" +"1-Alkenylglycerophosphoethanolamines" "a 1-O-(1Z-alk-1-enyl)-sn-glycero-3-phosphoethanolamine" ["a 1Z-alkenylglycerophosphoethanolamine"] null null 0 "C(\[R])=C\OC[C@H](COP(OCC[NH3+])(=O)[O-])O" "1-Alkyl-2-acetyl-sn-glycero-3-phosphates" "a 1-alkyl-2-acetyl-sn-glycero 3-phosphate" [] null null -2 "CC(=O)O[C@@H](COP([O-])(=O)[O-])COC[R]" "1-Alkyl-2-acyl-glycerol-3-phosphate" "a 2-acyl-1-alkyl-sn-glycerol 3-phosphate" [] null null -2 "C(OC[R1])[C@@H](OC(=O)[R2])COP(=O)([O-])[O-]" "1-Alkyl-2-acyl-glycerol-P-Etn" "a plasmanylethanolamine" ["an O-1-alkyl-2-acyl-sn-glycero-3-phosphoethanolamine", "a 2-acyl-O-1-alkyl-sn-glycero-3-phosphoethanolamine"] null null 0 "C([R1])OC[C@@H](OC([R2])=O)COP([O-])(=O)OCC[NH3+]" @@ -62,7 +62,7 @@ "1-Linoleoyl-2-acyl-glycerolipids" "a 1-linoleoyl 2-acyl-[glycerolipid]" [] null null 0 "CCCCC\C=C/C\C=C/CCCCCCCC(=O)OC[C@@H](OC([R1])=O)CO[R2]" "1-Linoleoyl-L-Phosphatidate" "a 1-linoleoyl 2-acyl-sn-glycerol 3-phosphate" [] null null -2 "CCCCC\C=C/C\C=C/CCCCCCCC(=O)OC[C@@H](OC([R])=O)COP([O-])(=O)[O-]" "1-Lyso-phospholipids" "a 1-lysophospholipid" [] null null -1 "C(OP([O-])(=O)O[R2])[C@H](OC(=O)[R1])CO" -"1-Lysophosphatidylglycerols" "a 1-lysophosphatidylglycerol" ["a 1-lyso-2-acyl-sn-glycero-3-phosphoglycerol", "a 2-acyl-1-lysophosphatidylglycerol"] null null -1 "C([C@H](O)COP([O-])(=O)OC[C@H](OC([R])=O)CO)O" +"1-Lysophosphatidylglycerols" "a 1-lysophosphatidylglycerol" ["a 2-acyl-sn-glycero-3-phosphoglycerol", "2-acyl-sn-glycero-3-phospho-(1'-sn-glycerol)"] null null -1 "C([C@H](O)COP([O-])(=O)OC[C@H](OC([R])=O)CO)O" "1-Lysophosphatidylserines" "a 1-lysophosphatidylserine" ["a 2-acyl-1-lyso-sn-glycero-3-phospho-L-serine", "a 2-acyl-1-lyso-phosphatidylserine"] null null -1 "C([O-])(=O)[C@@H]([NH3+])COP([O-])(=O)OC[C@@H](CO)OC(=O)[R]" "1-O-ALKYL-2-ACETYL-3-ACYL-SN-GLYCEROL" "a 2-acetyl-3-acyl-1-O-alkyl-sn-glycerol" [] null null 0 "CC(=O)O[C@@H](COC([R2])=O)COC[R1]" "1-O-ALKYL-2-ACETYL-SN-GLYCEROL" "1-O-alkyl-2-acetyl-sn-glycerol" ["a 1-alkyl-2-acetyl-sn-glycerol"] null null 0 "CC(=O)O[C@@H](CO)COC[R]" @@ -174,7 +174,6 @@ "2-ACETO-LACTATE" "(S)-2-acetolactate" ["(S)-2-hydroxy-2-methyl-3-oxobutanoate", "α-acetolactate", "(2S)-2-hydroxy-2-methyl-3-oxobutanoate"] "C5H7O4" 131.108 -1 "CC(=O)[C@](C)(O)C(=O)[O-]" "2-Acyl-glycero-3-phosphoethanolamine" "2-acyl-sn-glycero-3-phosphoethanolamine" [] null null 0 "C(OP([O-])(=O)OC[C@@H](CO)OC(=O)[R])C[NH3+]" "2-ACYL-GPE" "a 1-lysophosphatidylethanolamine" ["2-acyl-GPE", "O-(2-acyl-sn-glycero-3-phospho)-ethanolamine", "a 2-acyl-1-lyso-sn-glycero-3-phosphoethanolamine", "a 2-acyl-sn-glycero-3-phosphoethanolamine", "a 2-acyl-1-lysophosphatidylethanolamine"] null null 0 "C(COP([O-])(OC[C@@H](CO)OC(=O)[R])=O)[NH3+]" -"2-acyl-sn-glycero-3-phosphoglycerol" "a 2-acyl-sn-glycero-3-phosphoglycerol" [] null null -1 "C(O)[C@H](O)COP(OC[C@@H](CO)OC([R])=O)([O-])=O" "2-Acyl-sn-glycerol-3-phosphates" "a 1-lysophosphatidate" ["a 2-acyl-sn-glycerol 3P", "a 2-acyl-sn-glycerol 3-phosphate", "a 1-lyso-LPA", "a 1-lyso-phosphatidic acid", "a 1-lyso-phosphatidate"] null null -2 "C(=O)([R])O[C@H](CO)COP([O-])(=O)[O-]" "2-Acylglycero-Phosphocholines" "a 1-lysophosphatidylcholine" ["a 2-acylglycero-3-phosphocholine", "a L-1-lysolecithin", "a 1-lyso-2-acyl-sn-glycero-3-phosphocholine", "a 1-lysolecithin", "a β-lysophosphatidylcholine", "a 2-acylglycerophosphocholine", "a 2-acyl 1-lyso-sn-glycero-3-phosphatidylcholine", "a 2-acyl-sn-glycero-3-phosphocholine"] null null 0 "C([N+](C)(C)C)COP([O-])(=O)OC[C@H](OC([R])=O)CO" "2-acylphloroglucinol-1-glucosides" "a 2-acylphloroglucinol 1-O-β-D-glucoside" [] null null 0 "C([R])(c1(c(cc(cc1O)O)O[C@@H]2(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](O)2)))=O" @@ -216,11 +215,11 @@ "2-KETO-ISOVALERATE" "3-methyl-2-oxobutanoate" ["2-oxo-3-methylbutanoate", "2-oxoisovalerate", "α-keto-isovaleric acid", "α-ketoisopentanoic acid", "α-keto-isovalerate", "α-oxoisovalerate", "α-ketovaline", "2-keto-isovalerate", "2-ketovaline", "α-keto-valine", "2-oxoisopentanoate", "2-keto-3-methylbutyric acid", "3-methyl-2-oxobutyrate"] "C5H7O3" 115.108 -1 "CC(C(C([O-])=O)=O)C" "2-KETOGLUTARATE" "2-oxoglutarate" ["ketoglutarate", "α-ketoglutarate", "2-oxoglutaric acid", "α-ketoglutaric acid", "α-oxoglutarate", "2-ketoglutaric acid", "2-ketoglutarate", "2-oxopentanedionic acid", "2-oxopentanedionate", "a-ketoglutaric acid"] "C5H4O5" 144.084 -2 "C(CC([O-])=O)C(=O)C([O-])=O" "2-Lyso-phospholipids" "a 2-lysophospholipid" [] null null -1 "C(OP([O-])(=O)O[R2])[C@H](O)COC(=O)[R1]" -"2-Lyso-Plasmalogens" "a 2-lysoplasmalogen" ["1-radyl-2-lyso-sn-glycero-3-phosphocholine", "1-organyl-2-lyso-sn-glycero-3-phosphocholine", "a 1-alkenyl-2-lyso-sn-glycero-3-phospholipid"] null null -1 "C(/[R1])=C\OC[C@@H](O)COP([O-])(=O)O[R2]" +"2-Lyso-Plasmalogens" "a 2-lysoplasmalogen" ["1-radyl-2-lyso-sn-glycero-3-phosphocholine", "1-organyl-2-lyso-sn-glycero-3-phosphocholine", "a 1-O-(1Z-alk-1-enyl)-2-lyso-sn-glycero-3-phospholipid"] null null -1 "C(\[R1])=C\OC[C@@H](O)COP([O-])(=O)O[R2]" "2-Lyso-Plasmanyl-Phospholipids" "a 2-lysoplasmanyl phospholipid" [] null null -1 "C(OP([O-])(=O)O[R2])[C@H](O)COC[R1]" "2-Lysophosphatidylcholines" "a 2-lysophosphatidylcholine" ["alpha-acylglycerophosphocholine", "1-acylglycerophosphocholine", "a 1-acyl-sn-glycerol-3-phosphocholine", "a 1-acyl-sn-glycero-3-phosphocholine", "a 1-acylglycero-3-phosphocholine", "2-lysolecithin"] null null 0 "C[N+](C)(C)CCOP([O-])(=O)OC[C@@H](COC([R])=O)O" "2-LYSOPHOSPHATIDYLETHANOLAMINES" "a 2-lysophosphatidylethanolamine" ["L-2-lyso-phosphatidyl-ethanolamine", "a 1-acyl-2-lyso-phosphatidylethanolamine"] null null 0 "C(C[NH3+])OP(OC[C@@H](COC([R])=O)O)([O-])=O" -"2-Lysophosphatidylglycerols" "a 2-lysophosphatidylglycerol" ["a 1-acyl-2-lyso-phosphatidylglycerol"] null null -1 "C([C@H](O)COP([O-])(=O)OC[C@@H](COC([R])=O)O)O" +"2-Lysophosphatidylglycerols" "a 2-lysophosphatidylglycerol" ["1-acyl-sn-glycero-3-phospho-(1'-sn-glycerol)", "1-acyl-sn-glycero-3-phosphonato-(1'-sn-glycerol)"] null null -1 "C([C@H](O)COP([O-])(=O)OC[C@@H](COC([R])=O)O)O" "2-Me-Branched-234-Sat-FA" "a 2-methyl branched 2,3,4-saturated fatty acid" [] null null -1 "C([R])CC(C)C([O-])=O" "2-Me-Branched-234-Sat-FALD" "a 2-methyl branched 2,3,4-saturated fatty aldehyde" [] null null 0 "C([R])CC(C)C=O" "2-Me-Branched-234-Sat-Fatty-Acyl-CoA" "a 2-methyl branched 2,3,4-saturated fatty acyl-CoA" [] null null -4 "C([R])CC(C)C(SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(=O)(OP(=O)(OC[C@H]1(O[C@H]([C@@H]([C@@H]1OP([O-])(=O)[O-])O)n3(c2(c(c(N)ncn2)nc3))))[O-])[O-])=O" @@ -402,7 +401,7 @@ "3-Beta-Hydroxysterol-Esters" "a 3-β-hydroxysteroid ester" [] null null 0 "CC34(CCC2(C(CCC1(C[C@@H](OC(=O)[R2])CCC(C)12))C(CCC([R1])3)4))" "3-Beta-Hydroxysterols" "a 3β-hydroxysteroid" ["a 3-β-hydroxysterol"] null null 0 "CC34(CCC2(C(CCC1(C[C@@H](O)CCC(C)12))C(CCC([R])3)4))" "3-BROMOPYRUVATE" "3-bromopyruvate" ["bromopyruvate", "3-bromopyruvic acid", "bromopyruvic acid", "3-bromo-2-oxopropanoic acid"] "C3H2O3Br" 165.951 -1 "C(Br)C(=O)C(=O)[O-]" -"3-CARBAMOYLOXYMETHYLCEPHEM" "a 3-carbamoyloxymethylcephem" [] null null 0 "C(OC(N)=O)C2(\CSC1(N(C(=O)[C@@]([R])(NC(=O)[R])1)C(/C(=O)O)=2))" +"3-CARBAMOYLOXYMETHYLCEPHEM" "a 3-carbamoyloxymethylcephem" [] null null -1 "C(OC(N)=O)C2(\CS[C@H]1(N(C(=O)[C@@]([R2])(NC([R1])=O)1)C(/C([O-])=O)=2))" "3-carboxy-3-dimethylammonio-propyl-L-his" "a 2-[(3S)-3-carboxy-3-(dimethylammonio)propyl]-L-histidine-[translation elongation factor 2]" ["a 2-[3-carboxy-3-(dimethylammonio)propyl]-L-histidine in eEF-2"] null null 0 "C[NH+](C)[C@@H](CCc1(nc(c[nH]1)C[C@H](N[elongation factor 2])C(=O)[elongation factor 2]))C(=O)[O-]" "3-CARBOXY-3-HYDROXY-ISOCAPROATE" "(2S)-2-isopropylmalate" ["3-hydroxy-4-methyl-3-carboxypentanoate", "3-carboxy-3-hydroxy-4-methylpentanoate", "3-carboxy-3-hydroxy-isocaproate", "α-isopropylmalate", "2-isopropylmalic acid"] "C7H10O5" 174.153 -2 "CC(C)[C@@](O)(CC(=O)[O-])C([O-])=O" "3-CHLORO-D-ALANINE" "3-chloro-D-alanine" ["β-chloro-D-alanine"] "C3H6NO2Cl" 123.539 0 "C(Cl)[C@@H]([NH3+])C([O-])=O" @@ -709,6 +708,7 @@ "a-DNA-3-alpha-beta-unsaturated-aldehyde" "a [DNA]-3'-α,β-unsaturated aldehyde" [] null null -2 "C(=O)/C=C/[C@@H](O)COP(O[C@H]1(C[C@H]([a nucleobase])O[C@H](COP(=O)([O-])O[a deoxyribonucleic acid])1))(=O)[O-]" "A-DXYL-PEN-1:5" "a-dxyl-PEN-1:5" ["α-D-Xylp"] null null 0 null "A-GALACTOSYLCERAMIDE" "a β-D-galactosyl-N-acylsphingosine" ["a galactosylceramide"] null null 0 "CCCCCCCCCCCCC/C=C/[C@H]([C@H](CO[C@@H]1(O[C@H](CO)[C@H](O)[C@H](O)[C@@H](O)1))NC(=O)[R])O" +"a-GlcNAc-16-anhydro-MurNAc-tripeptide" "a GlcNAc-1,6-anhydro-MurNAc-tripeptide" [] null null -1 "C[C@H](NC([C@H](O[C@@H]2([C@@H](NC(=O)C)C3(OCC([C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](NC(=O)C)1))2)O3)))C)=O)C(N[C@H](CCC(=O)N[C@@H](CCCC([R])[NH3+])C(=O)[O-])C(=O)[O-])=O" "A-GLUCOSYLOXYANTHRAQUINONE" "a glucosyloxyanthraquinone" ["glucosyloxyanthraquinone"] "C20H18O8" 386.357 0 "C(O)[C@@H]4([C@H]([C@H](O)[C@@H](O)[C@H](Oc2(cccc3(c(=O)c1(c(cccc1)c(=O)c23))))O4)O)" "A-GLYCEROL-ESTER" "a glycerol ester" [] null null 0 "C(OC([R])=O)C(O)CO" "A-HEP-1:5" "a-HEP-1:5" [] null null 0 null @@ -838,7 +838,7 @@ "Agaroses" "an agarose" [] null null 0 "C(O)[C@@H]1([C@H](O)[C@H](O[R1])[C@@H](O)[C@@H](O1)O[C@@H]2([C@@H]3(CO[C@@H]2[C@H](O)[C@@H](O3)O[C@H]4([C@@H](O)[C@@H](CO)O[C@H]([C@H](O)4)O[C@@H]6([C@@H]5(CO[C@H]([C@H](O)[C@@H](O5)O[R2])6))))))" "Aggrecan" "aggrecan" ["chondroitin sulfate proteoglycan 1"] null null 0 null "Aggrecan-Cleavage-products" "an aggrecan cleavage product" [] null null 0 null -"AGMATHINE" "agmatine" [] "C5H16N4" 132.208 2 "C(CCC[NH3+])NC(N)=[NH2+]" +"AGMATHINE" "agmatine" ["(4-aminobutyl)guanidine", "N-(4-aminobutyl)guanidine"] "C5H16N4" 132.208 2 "C(CCC[NH3+])NC(N)=[NH2+]" "agmatinylcytidine34-tRNA-Ile2" "an agmatinylcytidine34 in tRNAIle2" [] null null -1 "C(NC(N)=[NH2+])CCCNC1(\N(\C=C/C(\N=1)=N)[C@@H]2(O[C@H](COP(=O)([O-])O[tRNAIle2])[C@@H](OP(=O)(O[tRNAIle2])[O-])[C@@H](O)2))" "AICAR" "5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide" ["Z-nucleotide", "AICA ribonucleotide", "5'-phosphoribosyl-5-amino-4-imidazole carboxamide", "5-amino-4-imidazolecarboxamide ribotide", "5'-P-ribosyl-5-amino-4-imidazole carboxamide", "aminoimidazole carboxamide ribonucleotide", "5-aminoimidazole-4-carboxamide-1-β-D-ribofuranosyl 5'-monophosphate", "ZMP"] "C9H13N4O8P" 336.197 -2 "C(OP(=O)([O-])[O-])[C@H]2(O[C@@H](n1(c(c(nc1)C(=O)N)N))[C@H](O)[C@H](O)2)" "ALA-GLY" "L-alanyl-glycine" ["Ala-Gly"] "C5H10N2O3" 146.146 0 "C[C@H]([NH3+])C(NCC([O-])=O)=O" @@ -884,7 +884,7 @@ "Alkenes" "an alkene" [] null null 0 "C([R4])([R3])=C([R2])[R1]" "Alkenyl-Thiohydroximate-O-Sulfates" "an N-(sulfonatooxy)alkenimidothioic acid with a terminal double bond" ["an alkenyl-thiohydroximate-O-sulfate", "a thiohydroximate-O-sulfate with a terminal alkene"] null null -1 "C=C[R]C(\S)=N\OS(=O)([O-])=O" "Alkyl-acetyl-glycero-phosphocholines" "a 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine" ["PAF", "platelet-activating factor", "a 1-alkyl-2-acetyl-sn-glycero-3-phosphocholine"] null null 0 "CC(=O)O[C@@H](COP([O-])(=O)OCC[N+](C)(C)C)COC[R]" -"Alkyl-enyl-acyl-gly-P-EtOH-amines" "a plasmenylethanolamine" ["a 1-Z-alkenyl-2-acylglycerophosphoethanolamine", "an O-1-Z-alk-1-enyl-2-acyl-sn-glycero-3-phosphoethanolamine", "alkenylphosphatidylethanolamine (incorrect)"] null null 0 "C(/[R1])=C\OC[C@@H](OC([R2])=O)COP([O-])(=O)OCC[NH3+]" +"Alkyl-enyl-acyl-gly-P-EtOH-amines" "a plasmenylethanolamine" ["a 1-Z-alkenyl-2-acylglycerophosphoethanolamine", "an 1-O-(1Z-alk-1-enyl)-2-acyl-sn-glycero-3-phosphoethanolamine", "alkenylphosphatidylethanolamine (incorrect)"] null null 0 "C(\[R1])=C\OC[C@@H](OC([R2])=O)COP([O-])(=O)OCC[NH3+]" "Alkyl-Hydro-Peroxides" "an organic hydroperoxide" ["ROOH", "an alkylhydroperoxide"] null null 0 "OO[R]" "Alkyl-Phosphates" "an alkyl phosphate" [] null null 0 null "Alkyl-Sulfenates" "an S-alkylsulfenate" ["an alkyl sulfenate", "a sulfenic acid", "a sulfenate"] null null 0 "C([R])SO" @@ -1325,7 +1325,7 @@ "Carboxamides" "a carboxamide" [] null null 0 "C(=O)([R1])N([R3])[R2]" "Carboxamidine" "a carboxamidine" [] null null 0 "C(=N[R2])(N([R4])[R3])[R1]" "carboxybiotin-L-lysine-in-BCCP-dimers" "a [carboxyl-carrier protein dimer]-N6-carboxybiotinyl-L-lysine" ["a [BCCP dimer]-N6-carboxybiotinyl-L-lysine", "a [BCCP]-N6-carboxybiotinyl-L-lysine"] null null -1 "C(NC(=O)CCCC[C@@H]1(SC[C@@H]2(N(C([O-])=O)C(=O)N[C@H]12)))CCC[C@@H](C([a [biotin carboxyl-carrier protein] monomer])=O)N[a [biotin carboxyl-carrier protein] monomer].C(NC(=O)CCCC[C@@H]3(SC[C@@H]4(NC(=O)N[C@H]34)))CCC[C@@H](C([a [biotin carboxyl-carrier protein] monomer])=O)N[a [biotin carboxyl-carrier protein] monomer]" -"CARBOXYETHYL-3-5-CYCLOHEXADIENE-1-2-DIOL" "3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate" ["cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol", "3-(cis-5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate", "cis-3-(carboxyethyl)-3,5-cyclohexadiene-1,2-diol"] "C9H11O4" 183.183 -1 "C(CCC1(\[C@H](O)[C@H](O)\C=C/C=1))(=O)[O-]" +"CARBOXYETHYL-3-5-CYCLOHEXADIENE-1-2-DIOL" "3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate" ["cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol", "3-(cis-5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate", "cis-3-(carboxyethyl)-3,5-cyclohexadiene-1,2-diol"] "C9H11O4" 183.184 -1 "C(CCC1(\[C@H](O)[C@H](O)\C=C/C=1))(=O)[O-]" "CARBOXYL-GROUP" "a carboxyl group" [] "CHO2" 45.018 -1 "C(=O)[O-]" "Carboxylate-Derivatives" "a carboxylate derivative" ["a carboxylic acid derivative"] null null 0 null "Carboxylate-siderophores" "a carboxylate siderophore" [] null null -1 "C([a siderophore])C([O-])=O" @@ -1543,7 +1543,7 @@ "CPD-10775" "(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one" ["Pro-AI-2 (vibrio)", "(S)-DHMF"] "C5H8O4" 132.116 0 "C[C@]1(O)(OC[C@H](O)C(=O)1)" "CPD-10776" "(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran" ["AI-2 precursor", "(S)-THMF", "Pro-AI-2 (vibrio)"] "C5H10O5" 150.131 0 "C[C@]1(O)(OC[C@H](O)[C@@](O)(O)1)" "CPD-10796" "2,3-dihydroxy-trans-cinnamate" ["2,3-dihydroxycinnamic acid", "(2E)-3-(2,3-dihydroxyphenyl)prop-2-enoate"] "C9H7O4" 179.152 -1 "C(/C=C/c1(c(O)c(O)ccc1))(=O)[O-]" -"CPD-10797" "3-hydroxycinnamate" ["trans-3-hydroxycinnamate", "m-coumarate", "m-coumaric acid", "trans-3-coumarate", "3-hydroxycinnamic acid", "(2E)-3-(3-hydroxyphenyl)prop-2-enoate", "3-coumarate", "3-hydroxy-trans-cinnamate (incorrect)"] "C9H7O3" 163.152 -1 "C(/C=C/c1(cc(O)ccc1))(=O)[O-]" +"CPD-10797" "3-hydroxycinnamate" ["trans-3-hydroxycinnamate", "m-coumarate", "m-coumaric acid", "trans-3-coumarate", "3-hydroxycinnamic acid", "(2E)-3-(3-hydroxyphenyl)prop-2-enoate", "3-coumarate", "3-hydroxy-trans-cinnamate (incorrect)"] "C9H7O3" 163.152 -1 "C(/C=C/c1(cccc(O)c1))(=O)[O-]" "CPD-108" "4-methylphenol" ["4-hydroxytoluene", "p-hydroxytoluene", "4-cresol", "p-cresol"] "C7H8O" 108.14 0 "Cc1(ccc(cc1)O)" "CPD-10814" "glycyl-L-proline" ["Gly-L-Pro", "Gly-Pro"] "C7H12N2O3" 172.183 0 "C1(N(C(=O)C[NH3+])[C@@H](CC1)C(=O)[O-])" "CPD-10835" "4-aminobenzylamine" ["4-aminoaniline", "p-phenylenediamine"] "C6H8N2" 108.143 0 "c1(cc(N)ccc(N)1)" @@ -1569,7 +1569,7 @@ "CPD-11256" "an 11-hydroxyjasmonate sulfate" ["an 11-OHJA sulfate", "an 11-hydroxyjasmonic acid sulfate", "an 11-SO4-hydroxy-JA", "an 11-hydroxy-JA-sulfate"] "C12H16O7S" 304.314 -2 "CC(OS(=O)(=O)[O-])\C=C/CC1(C(=O)CCC1CC([O-])=O)" "CPD-11281" "S-sulfanylglutathione" ["glutathione-sulfide", "glutathione persulfide"] "C10H16N3O6S2" 338.373 -1 "C(SS)[C@@H](C(NCC([O-])=O)=O)NC(=O)CC[C@H]([NH3+])C([O-])=O" "CPD-11285" "sulfathiazole" ["Neostrepsan", "Norsulfasol", "Norsulfazole"] "C9H9N3O2S2" 255.309 0 "c1(sccn1)NS(=O)(=O)c2(ccc(cc2)N)" -"CPD-1136" "cis-2-methylaconitate" ["(Z)-but-2-ene-1,2,3-tricarboxylate", "2-methyl-cis-aconitate", "2-methylaconitate"] "C7H5O6" 185.113 -3 "CC(\C([O-])=O)=C(CC([O-])=O)\C([O-])=O" +"CPD-1136" "(Z)-2-methylaconitate" ["(Z)-but-2-ene-1,2,3-tricarboxylate", "2-methyl-cis-aconitate", "cis-2-methylaconitate"] "C7H5O6" 185.113 -3 "CC(\C([O-])=O)=C(CC([O-])=O)\C([O-])=O" "CPD-11391" "α-curcumene" ["1-(1,5-dimethyl-4-hexenyl)-4-methylbenzene", "2-methyl-6-p-tolyl-2-heptene"] "C15H22" 202.339 0 "CC(C)=CCCC(C)c1(ccc(C)cc1)" "CPD-1142" "salicin" ["salicoside", "2-(hydroxymethyl)-phenyl-β-D-glucopyranoside", "D(-)-salicin"] "C13H18O7" 286.281 0 "C(O)c1(c(cccc1)O[C@@H]2(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](O)2))" "CPD-11426" "aphidicolin" [] "C20H34O4" 338.486 0 "C[C@]4([C@H](O)CC[C@@]3(C)([C@H](CC[C@H]1(C[C@@H]2([C@](CO)(O)CCC1(C2)3)))4))(CO)" @@ -1679,7 +1679,7 @@ "CPD-12763" "5-aminopentanal" ["1-amino-5-oxopentane"] "C5H12NO" 102.156 1 "C([NH3+])CCCC=O" "CPD-12773" "α-D-Glc-PP-Und" ["α-D-glucose-diphosphoundecaprenol", "α-D-glucosyl-diphosphoundecaprenol", "undecaprenol-diphosphate-glucose", "α-D-glucopyranosyl-diphosphoundecaprenol"] "C61H100O12P2" 1087.401 -2 "C\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC/C=C(C)/CC/C=C(C)/CC/C=C(C)/COP(=O)([O-])OP(=O)([O-])O[C@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](O)1)" "CPD-12792" "Reactive blue 5" ["1-amino-4-{[3-({4-chloro-6-[(3-sulfophenyl)amino]-1,3,5-triazin-2-yl}amino)-4-sulfophenyl]amino}-9,10-dihydro-9,10-dioxoanthracene-2-sulfonic acid"] "C29H21N7O11S3Cl" 775.158 -3 "c6(Cl)(nc(Nc1(cccc(S([O-])(=O)=O)c1))nc(Nc5(c(S([O-])(=O)=O)ccc(Nc2(c3(c(c(N)c(S([O-])(=O)=O)c2)C(O)c4(c(C(O)3)cccc4))))c5))n6)" -"CPD-12795" "Reactive blue 19" [] "C22H16N2O11S3" 580.555 -2 "C(OS(=O)(=O)[O-])CS(=O)(=O)c1(ccc(cc1)Nc2(cc(S([O-])(=O)=O)c(N)c3(c2c(=O)c4(c(c(=O)3)cccc4))))" +"CPD-12795" "Reactive blue 19" ["Remazol brilliant blue R"] "C22H16N2O11S3" 580.555 -2 "C(OS(=O)(=O)[O-])CS(c1(cc(ccc1)Nc2(cc(S([O-])(=O)=O)c(N)c3(c2c(=O)c4(c(c(=O)3)cccc4)))))(=O)=O" "CPD-12796" "2,2'-azino-bis-(3-ethylbenzothiazoline-6-sulfonate)" ["ABTS", "2,2'-azino-di-(3-ethylbenzothiazoline-6-sulfonate)", "2,2'-azino-di-(3-ethylbenzothiazoline)-6-sulfonic acid"] "C18H16N4O6S4" 512.588 -2 "CCN2(C(\Sc1(cc(ccc12)S(=O)(=O)[O-]))=N\N=C4(N(CC)c3(ccc(cc3S4)S(=O)(=O)[O-])))" "CPD-12797" "2,6-dimethoxyphenol" ["DMP", "1,3-di-O-methylpyrogallol", "1,3-dimethoxy-2-hydroxybenzene", "1,3-dimethyl pyrogallate", "2-hydroxy-1,3-dimethoxybenzene", "pyrogallol 1,3-dimethyl ether"] "C8H10O3" 154.165 0 "COc1(c(O)c(OC)ccc1)" "CPD-12799" "hypochlorous acid" ["HClO", "HOCl", "hypochloric acid"] "HOCl" 52.46 0 "ClO" @@ -1713,6 +1713,7 @@ "CPD-13118" "GDP-β-L-fucose" ["GDP-β-L-fucopyranose", "GDP-L-fucose", "guanosine diphosphate fucose", "GDP-L-fucopyranose", "GDP-L-Fuc", "GDP-L-Fucp"] "C16H23N5O15P2" 587.33 -2 "C[C@@H]4(O[C@H](OP(OP(=O)([O-])OC[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](O)3))(=O)[O-])[C@H]([C@@H]([C@@H]4O)O)O)" "CPD-13158" "polymyxin E2" ["colistin B"] "C52H103N16O13" 1160.485 5 "CC(C)CCCCC(=O)N[C@@H](CC[NH3+])C(=O)N[C@@H]([C@H](O)C)C(=O)N[C@@H](CC[NH3+])C(=O)N[C@H]1(CCNC(=O)[C@H]([C@H](O)C)NC(=O)[C@H](CC[NH3+])NC(=O)[C@H](CC[NH3+])NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](CC(C)C)NC(=O)[C@H](CC[NH3+])NC(=O)1)" "CPD-13198" "an exposed unphosphorylated, unbranched malto-oligosaccharide tail on amylopectin" [] null null 0 null +"CPD-13211" "4-nitrophenyl-β-D-glucopyranoside" ["p-nitrophenyl-β-D-glucoside", "p-nitrophenyl-β-D-glucopyranoside", "4-nitrophenyl-β-D-glucoside", "pNPG", "pNPβGlu"] "C12H15NO8" 301.252 0 "c1(c(ccc(c1)O[C@H]2([C@@H]([C@H]([C@@H]([C@@H](CO)O2)O)O)O))[N+]([O-])=O)" "CPD-13227" "N,N',N''-triacetylchitotriose" ["triacetylchitotriose"] "C24H41N3O16" 627.598 0 "CC(=O)N[C@H]1(C(O)O[C@H](CO)[C@H]([C@H](O)1)O[C@H]2([C@H](NC(C)=O)[C@@H](O)[C@@H]([C@@H](CO)O2)O[C@@H]3(O[C@@H]([C@@H](O)[C@H](O)[C@@H](NC(C)=O)3)CO)))" "CPD-13243" "geranyl monophosphate" ["geranyl-monophosphate", "geranyl-phosphate", "(E)-geranyl phosphate", "geranyl-P", "trans-geranyl phosphate"] "C10H17O4P" 232.216 -2 "CC(C)=CCCC(\C)=C/COP([O-])([O-])=O" "CPD-13245" "8-anilinonaphthalenesulfonate" ["8-anilino-1-naphthalenesulfonic acid", "8-anilino-1-naphthalenesulfonate", "8-anilinonaphthalene-1-sulfonate", "ANS"] "C16H12NO3S" 298.336 -1 "c3(ccc(Nc1(c2(c(ccc1)cccc(S(=O)([O-])=O)2)))cc3)" @@ -1898,7 +1899,8 @@ "CPD-15861" "a holo malonate-decarboxylase" [] null null -3 "CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@@H]2([C@@H](O)[C@@H](O[C@@H]1([C@H](O)[C@H](O)[C@@H](COP(=O)([O-])OC[C@H](N[[an apo malonate decarboxylase acyl-carrier protein]])C(=O)[[an apo malonate decarboxylase acyl-carrier protein]])O1))[C@@H](O2)n4(cnc3(c(N)ncnc34))))[C@@H](O)C(=O)NCCC(=O)NCCS" "CPD-15867" "L-lyxopyranose" [] "C5H10O5" 150.131 0 "C1(OC(O)[C@H](O)[C@H](O)[C@@H](O)1)" "CPD-15868" "aldehydo-L-lyxose" [] "C5H10O5" 150.131 0 "C(=O)[C@H](O)[C@H](O)[C@@H](O)CO" -"CPD-15871" "Mo(O)2(S)-molybdopterin cofactor" ["MoOOSDtpp-mP", "molybdenum cofactor (xanthine dehydrogenase)", "sulfurated eukaryotic molybdenum cofactor", "Mo(=O)2(=S)-molybdopterin cofactor"] "C10H10N5O8PS3Mo" 551.311 -3 "C(OP([O-])(=O)[O-])[C@@H]1(C4(\S[Mo](=S)([O-])(=O)SC(/[C@H]2([C@@H](O1)Nc3(c(N2)c(=O)[nH]c(N)n3)))=4))" +"CPD-15870" "MoO2(OH)-molybdopterin cofactor" ["MoO2(OH)Dtpp-mP", "MoO2(OH)-MPT", "MoCo (dioxyo)", "molybdenum cofactor (dioxyo)"] "C10H11N5O9PS2Mo" 536.259 -3 "C(OP([O-])(=O)[O-])[C@@H]1(C4(\S[Mo-](=O)(=O)(O)SC(/[C@H]2([C@@H](O1)Nc3(c(N2)c(=O)[nH]c(N)n3)))=4))" +"CPD-15871" "MoO2(S)-molybdopterin cofactor" ["MoOOSDtpp-mP", "molybdenum cofactor (xanthine dehydrogenase)", "sulfurated eukaryotic molybdenum cofactor", "Mo(=O)2(=S)-molybdopterin cofactor"] "C10H11N5O8PS3Mo" 552.319 -3 "C(OP([O-])(=O)[O-])[C@@H]1(C4(\S[Mo-](=S)(O)(=O)SC(/[C@H]2([C@@H](O1)Nc3(c(N2)c(=O)[nH]c(N)n3)))=4))" "CPD-15873" "bis(guanylyl molybdopterin) cofactor" ["bis(molybdopterin guanine dinucleotide)molybdenum cofactor", "Mo(Dtpp-mGDP)2", "bis-MGD", "bis(molybdopterin guanine dinucleotide)molybdenum", "molybdo-bis(pyranopterin guanine dinucleotide)", "mo-bis(molybdopterin guanine dinucleotide)", "Mo-bisPGD", "Mo-bis(pyranopterin guanosine dinucleotide)"] "C40H44N20O27P4S4Mo" 1584.98 -4 "C(OP([O-])(=O)OP([O-])(=O)OC[C@H]8(O[C@H]%10(Nc%11(nc(N)[nH]c(=O)c(N[C@@H](C9(\S[Mo]4(=O)(SC5(/[C@@H](COP([O-])(=O)OP(=O)([O-])OC[C@@H]1([C@@H](O)[C@@H](O)[C@@H](O1)n2(cnc3(c(=O)[nH]c(N)nc23))))O[C@@H]6([C@H](C(\S4)=5)Nc7(c(=O)[nH]c(N)nc(N6)7))))SC\8=9))%10)%11))))[C@@H]%12([C@@H](O)[C@@H](O)[C@@H](O%12)n%13(cnc%14(c%13nc(N)[nH]c(=O)%14)))" "CPD-15874" "bis(molybdenum cofactor)" ["bis(molybdopterin)molybdenum cofactor", "bis-MPT", "bis(molybdopterin)molybdenum", "bis-Mo-MPT"] "C20H20N10O13P2S4Mo" 894.565 -4 "C([C@H]5(O[C@H]7(Nc8(nc(N)[nH]c(=O)c(N[C@@H](C6(\S[Mo]1(=O)(SC2(/[C@@H](COP(=O)([O-])[O-])O[C@@H]3([C@H](C(\S1)=2)Nc4(c(=O)[nH]c(N)nc(N3)4))))SC\5=6))7)8))))OP([O-])(=O)[O-]" "CPD-15878" "membrane protein integrase" ["MPIase", "N-acetyl-α-D-fucosyl-(1→4)-N-acetyl-β-D-mannosaminouronyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphosphate-diacylglycerol", "ManNAcA-GlcNAc-Fuc4NAc-diphosphate diacylglycerol"] null null -3 "C[C@H]3(O[C@H](O[C@H]1([C@H](O)[C@H](NC(C)=O)[C@@H](O[C@H](C(=O)[O-])1)O[C@H]2([C@H](O)[C@@H](NC(C)=O)[C@@H](OP(OP([O-])(=O)OC[C@H](COC([R1])=O)OC(=O)[R2])([O-])=O)O[C@H](CO)2)))[C@H](O)[C@@H](O)[C@@H](NC(C)=O)3)" @@ -2271,8 +2273,8 @@ "CPD-19942" "a 3-hydroxy-2-oxopropyl 3-oxoalkanoate" [] null null 0 "C([R])C(CC(=O)OCC(=O)CO)=O" "CPD-19943" "a (4-alkanoyl-5-oxo-2H-furan-3-yl)methyl phosphate" [] null null -2 "C([R])C(C1(C(=O)OCC(COP([O-])([O-])=O)=1))=O" "CPD-19944" "a [(3S,4R)-4-alkanoyl-5-oxooxolan-3-yl]methyl phosphate" [] null null -2 "C([R])C([C@H]1([C@H](COP([O-])([O-])=O)COC(=O)1))=O" -"CPD-19952" "piperacillin" [] "C23H27N5O7S" 517.556 0 "CCN1(CCN(C(=O)C(=O)1)C(=O)N[C@H](c2(ccccc2))C(=O)N[C@@H]4(C(=O)N3([C@H](SC(C)(C)[C@H](C(=O)O)3)4)))" -"CPD-19953" "cefoperazone" [] "C25H27N9O8S2" 645.664 0 "CCN1(C(=O)C(=O)N(CC1)C(=O)N[C@H](c2(ccc(cc2)O))C(=O)N[C@H]5(C(=O)N4(C(C(O)=O)=C(CSc3(nnnn(C)3))CS[C@@H]45)))" +"CPD-19952" "piperacillin" [] "C23H26N5O7S" 516.54803 -1 "CCN1(CCN(C(=O)C(=O)1)C(=O)N[C@H](c2(ccccc2))C(=O)N[C@@H]4(C(=O)N3([C@H](SC(C)(C)[C@H](C(=O)[O-])3)4)))" +"CPD-19953" "cefoperazone" [] "C25H26N9O8S2" 644.656 -1 "CCN1(C(=O)C(=O)N(CC1)C(=O)N[C@H](c2(ccc(cc2)O))C(=O)N[C@H]5(C(=O)N4(C(C([O-])=O)=C(CSc3(nnnn(C)3))CS[C@@H]45)))" "CPD-2" "Cs+" ["cesium(I)", "CsI"] "Cs" 132.905 1 "[Cs+]" "CPD-20033" "1,N2-ethenoguanine" ["1,N(2)-ethenoguanine", "1,4-dihydro-9H-imidazo[1,2-a]purin-9-one", "epsilonG", "εG"] "C7H5N5O" 175.149 0 "c1(cn2(c(n1)[nH]c3([nH]cnc(c(=O)2)3)))" "CPD-20034" "1,N6-ethanoadenine" ["1,N(6)-ethanoadenine", "EA"] "C7H7N5" 161.166 0 "C2(C\N=C1(c3([nH]cnc(\N=C/N12)3)))" @@ -2375,7 +2377,7 @@ "CPD-21260" "3-deoxy-D-glycero-α-D-galacto-nonulosonate" ["α-Kdn", "3-deoxy-D-glycero-α-D-galacto-non-2-ulopyranosonate"] "C9H15O9" 267.212 -1 "C(O)[C@@H](O)[C@H]([C@@H]1(O[C@](C([O-])=O)(O)C[C@@H]([C@H]1O)O))O" "CPD-21261" "3-deoxy-β-D-manno-2-octulosonate" ["β-2-keto-3-deoxyoctulosonic acid pyranose", "3-deoxy-β-D-manno-octulosonate", "3-deoxy-β-D-manno-oct-2-ulosonate"] "C8H13O8" 237.186 -1 "C(O)[C@@H](O)[C@H]1(O[C@](O)(C([O-])=O)C[C@H]([C@H]1O)O)" "CPD-21282" "florfenicol" [] "C12H14NO4FSCl2" 358.211 0 "CS(c1(ccc([C@@H](O)[C@@H](CF)NC(=O)C(Cl)Cl)cc1))(=O)=O" -"CPD-21283" "nafcillin" [] "C21H22N2O5S" 414.475 0 "CCOc1(ccc4(ccccc(c1C(=O)N[C@@H]2(C(=O)N3([C@@H](C(=O)O)C(C)(C)S[C@H]23)))4))" +"CPD-21283" "nafcillin" [] "C21H21N2O5S" 413.467 -1 "CCOc1(ccc4(ccccc(c1C(=O)N[C@@H]2(C(=O)N3([C@@H](C(=O)[O-])C(C)(C)S[C@H]23)))4))" "CPD-21304" "alloxanthine" ["oxypurinol"] "C5H4N4O2" 152.112 0 "c1(n[nH]c2(c1c(=O)[nH]c(=O)[nH]2))" "CPD-21336" "2-chlorophenylhydrazine" [] "C6H7N2Cl" 142.588 0 "c1(cc(Cl)c(NN)cc1)" "CPD-21340" "all-trans-nonaprenyl diphosphate" ["(hydroxy-(3,7,11,15,19,23,27,31,35-nonamethylhexatriaconta-2,6,10,14,18,22,26,30,34-nonaenoxy)phosphinoyl)oxyphosphonic acid", "solanyl pyrophosphate", "all-trans-nonaprenyl diphosphate", "solanesyl pyrophosphate", "solanesyl diphosphate"] "C45H73O7P2" 788.015 -3 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/COP(OP(=O)([O-])[O-])(=O)[O-]" @@ -2389,7 +2391,7 @@ "CPD-21359" "lipid A-core oligosaccharide (E. coli K-12 core type)" ["core oligosaccharide-lipid A (E. coli K-12 core type)"] "C162H282N2O89P4" 3805.864 -10 "CCCCCCCCCCCCCC(=O)O[C@H](CCCCCCCCCCC)CC(=O)O[C@@H]%11([C@H]([C@@H](O[C@H](CO[C@@]%10(C(=O)[O-])(O[C@H]([C@H](O)CO)[C@H](O[C@H]8(O[C@H]([C@@H](O)CO)[C@@H](OP([O-])([O-])=O)[C@H](O[C@H]7(O[C@H]([C@@H](CO[C@H]1(O[C@H]([C@@H](O)CO)[C@@H](O)[C@H](O)[C@H](O)1))O)[C@@H](OP([O-])(=O)[O-])[C@H](O[C@H]6(O[C@H](CO[C@H]2(O[C@H](CO)[C@H](O)[C@H](O)[C@@H](O)2))[C@@H](O)[C@H](O[C@H]3(O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O[C@H]5(O[C@H](CO[C@H]4(O[C@H]([C@@H](O)CO)[C@@H](O)[C@H](O)[C@H](O)4))[C@@H](O)[C@H](O)[C@@H](O)5)))[C@@H](O)6))[C@H](O)7))[C@H](O)8))[C@H](O[C@]9(O[C@H]([C@@H](CO)O)[C@H](O)[C@H](O)C9)C(=O)[O-])C%10))[C@H]%11OP([O-])([O-])=O)OC[C@@H]%12([C@@H](O)[C@H](OC(C[C@H](O)CCCCCCCCCCC)=O)[C@@H](NC(=O)C[C@H](O)CCCCCCCCCCC)[C@@H](OP([O-])([O-])=O)O%12))NC(C[C@H](OC(=O)CCCCCCCCCCC)CCCCCCCCCCC)=O)" "CPD-21374" "bis(guanylyl tungstenpterin) cofactor" ["W-bisPGD", "W-bis(pyranopterin guanosine dinucleotide)"] "C40H44N20O27P4S4W" 1672.89 -4 "C(OP([O-])(=O)OP([O-])(=O)OC[C@H]8(O[C@H]%10(Nc%11(nc(N)[nH]c(=O)c(N[C@@H](C9(\S[W]4(=O)(SC5(/[C@@H](COP([O-])(=O)OP(=O)([O-])OC[C@@H]1([C@@H](O)[C@@H](O)[C@@H](O1)n2(cnc3(c(=O)[nH]c(N)nc23))))O[C@@H]6([C@H](C(\S4)=5)Nc7(c(=O)[nH]c(N)nc(N6)7))))SC\8=9))%10)%11))))[C@@H]%12([C@@H](O)[C@@H](O)[C@@H](O%12)n%13(cnc%14(c%13nc(N)[nH]c(=O)%14)))" "CPD-21381" "4-hydroxy-2-oxohexanoate" [] "C6H9O4" 145.135 -1 "CCC(O)CC(=O)C(=O)[O-]" -"CPD-21382" "4-hydroxy-2-oxopentanoate" [] "C5H7O4" 131.108 -1 "CC(O)CC(=O)C(=O)[O-]" +"CPD-21382" "4-hydroxy-2-oxopentanoate" ["4-hydroxy-2-oxovalerate"] "C5H7O4" 131.108 -1 "CC(O)CC(=O)C(=O)[O-]" "CPD-21398" "a [protein]-phospho-L-aspartate" [] null null -2 "C(=O)([a protein])[C@@H](N[a protein])CC(=O)OP(=O)([O-])[O-]" "CPD-21406" "a partially deacetylated poly-β-1,6-N-acetyl-D-glucosamine (fragment 1)" [] null null 1 "CC(=O)N[C@H]2([C@H](O)O[C@H](COC1(O[C@H](CO[R1])[C@@H](O)[C@H](O)[C@@H]([NH3+])1))[C@@H](O)[C@H](O)2)" "CPD-21407" "a partially deacetylated poly-β-1,6-N-acetyl-D-glucosamine (fragment 2)" [] null null 1 "CC(=O)N[C@H]3([C@H](O[R2])O[C@H](CO[C@@H]2(O[C@H](CO[C@@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]([NH3+])1))[C@@H](O)[C@H](O)[C@@H](NC(C)=O)2))[C@@H](O)[C@H](O)3)" @@ -2403,6 +2405,7 @@ "CPD-216" "D-phenylalanine" ["D-α-amino-β-phenylpropionic acid"] "C9H11NO2" 165.191 0 "C([O-])(=O)[C@H]([NH3+])Cc1(ccccc1)" "CPD-21605" "enterobacterial common antigen-phosphatidylglycerol" ["ECAPG", "ECA phosphatidylglycerol"] null null -4 "C[C@H]9(O[C@H](O[C@H]1([C@H](O)[C@H](NC(C)=O)[C@@H](O[C@H](C(=O)[O-])1)O[C@H]8([C@H](O)[C@@H](NC(C)=O)[C@@H](O[C@@H]2([C@@H](O)[C@H](O[C@H](C)[C@H](NC(C)=O)2)O[C@H]3([C@H](O)[C@H](NC(C)=O)[C@@H](O[C@H](C(=O)[O-])3)O[C@H]7([C@H](O)[C@@H](NC(C)=O)[C@@H](O[C@@H]4([C@@H](O)[C@H](O[C@H](C)[C@H](NC(C)=O)4)O[C@H]5([C@H](O)[C@H](NC(C)=O)[C@@H](O[C@H](C(=O)[O-])5)O[C@H]6([C@H](O)[C@@H](NC(C)=O)[C@@H](OP([O-])(=O)OC[C@@H](OC(=O)[R2])COC(=O)[R1])O[C@H](CO)6))))O[C@H](CO)7))))O[C@H](CO)8)))[C@H](O)[C@@H](O[R])[C@@H](NC(C)=O)9)" "CPD-21612" "iron(III)-[(2,3-dihydroxybenzoylserine)2] complex" ["ferric-[(2,3-dihydroxybenzoylserine)2] complex"] "C20H15N2O11Fe" 515.192 -2 "c2(cc1(O[Fe-]34(Oc1c(c2)C(=O)N[C@@H](CO)C(OC[C@@H](NC(=O)c5(cccc(O3)c(O4)5))C([O-])=O)=O)))" +"CPD-21655" "2-nitrophenyl-β-D-glucopyranoside" ["o-nitrophenyl β-D-glucopyranoside", "ONP-β-D-glucopyranoside", "o-NPGlc", "ortho-nitrophenyl β-D-glucopyranoside"] "C12H15NO8" 301.252 0 "c1(cc(c(cc1)O[C@H]2([C@@H]([C@H]([C@@H]([C@@H](CO)O2)O)O)O))[N+]([O-])=O)" "CPD-21685" "6-sulfo-α-D-quinovose" ["α-D-sulphoquinovose", "6-deoxy-6-α-D-sulfoglucose", "6-deoxy-6-sulfo-α-D-glucopyranose", "α-sulfoquinovose"] "C6H11O8S" 243.208 -1 "C([C@H]1(O[C@H](O)[C@H](O)[C@@H](O)[C@H](O)1))S(=O)(=O)[O-]" "CPD-21686" "6-sulfo-β-D-quinovose" ["β-D-sulphoquinovose", "6-deoxy-6-β-D-sulfoglucose", "6-deoxy-6-sulfo-β-D-glucopyranose", "β-sulfoquinovose"] "C6H11O8S" 243.208 -1 "C([C@H]1(O[C@@H](O)[C@H](O)[C@@H](O)[C@H](O)1))S(=O)(=O)[O-]" "CPD-21702" "3-hydroxypropanal dimer" ["2-(2-hydroxyethyl)-1,3-dioxan-4-ol"] "C6H12O4" 148.158 0 "C(O)CC1(OC(O)CCO1)" @@ -2440,7 +2443,7 @@ "CPD-22331" "(Z)-2-methylureidoacrylate" ["(2Z)-3-(carbamoylamino)-2-methylprop-2-enoate"] "C5H7N2O3" 143.122 -1 "CC(\C(=O)[O-])=C\NC(N)=O" "CPD-22332" "(Z)-2-methylaminoacrylate" [] "C4H6NO2" 100.097 -1 "CC(\C(=O)[O-])=C\N" "CPD-22373" "(2E)-3,7-dimethylocta-2,6-diene-1-thiol" [] "C10H18S" 170.312 0 "CC(C)=CCCC(\C)=C/CS" -"CPD-22376" "ertapenem" [] "C22H25N3O7S" 475.515 0 "C[C@@H]2([C@@H]1([C@H](C(=O)N1C(\C(O)=O)=C2/S[C@H]4(C[C@@H](C(Nc3(cc(C(=O)O)ccc3))=O)NC4))[C@@H](C)O))" +"CPD-22376" "ertapenem" [] "C22H23N3O7S" 473.50003 -2 "C[C@@H]2([C@@H]1([C@H](C(=O)N1C(\C([O-])=O)=C2/S[C@H]4(C[C@@H](C(Nc3(cc(C(=O)[O-])ccc3))=O)NC4))[C@H](C)O))" "CPD-22419" "ferrioxamine B" [] "C25H46N6O8Fe" 614.521 1 "CC(=O)N2(O[Fe]1(ON(CCCCCNC(=O)CCC(=O)N(CCCCC[NH3+])O1)C(CCC(=O)NCCCCC2)=O))" "CPD-225" "trans-aconitate" ["trans-aconitic acid", "(E)-prop-1-ene-1,2,3-tricarboxylate"] "C6H3O6" 171.086 -3 "C([O-])(=O)/C=C(CC([O-])=O)/C([O-])=O" "CPD-22525" "p-aminophenyl-β-D-glucoside" ["4-aminophenyl-β-D-glucoside"] "C12H17NO6" 271.269 0 "C(O)[C@@H]2([C@@H](O)[C@H](O)[C@@H](O)[C@H](Oc1(ccc(N)cc1))O2)" @@ -2472,6 +2475,7 @@ "CPD-2343" "3-dehydro-L-gulonate 6-phosphate" ["3-keto-L-gulonate 6-P", "3-keto-L-gulonate 6-phosphate"] "C6H8O10P" 271.097 -3 "C(OP([O-])([O-])=O)[C@H](O)[C@H](C([C@@H](C([O-])=O)O)=O)O" "CPD-23430" "trans heme d" [] "C34H32N4O6Fe" 648.497 0 "C=CC3(\C8(\[N+]4(\[Fe]16([N+]5(\C(/[C@@]([C@](C(\C=c2(c(c(c(\n12)=C\C(\C(/C)=3)=4)C=C)C))=5)(C)O)(CCC(=O)[O-])O)=C/c7(n6c(c(c7CCC(=O)[O-])C)\C=8))))))" "CPD-23431" "keto-L-glycero-L-galacto-octuluronate" [] "C8H13O9" 253.185 -1 "C(C([C@H]([C@@H]([C@@H]([C@H]([C@H](C([O-])=O)O)O)O)O)O)=O)O" +"CPD-23445" "cytidylyl molybdenum cofactor (dioxo)" ["MoO2-molybdopterin cytosine dinucleotide", "Mo(VI)-molybdopterin cytosine dinucleotide", "MoO2(OH)Dtpp-mCDP", "MCD", "Mo-molybdopterin cytosine dinucleotide"] "C19H23N8O16P2S2Mo" 841.442 -3 "C(OP(OP(OC[C@H]2(O[C@H]1(Nc4(nc([nH]c(=O)c(N[C@H]1C3(\S[Mo-](O)(=O)(=O)SC\2=3))4)N))))([O-])=O)(=O)[O-])[C@@H]6([C@H]([C@H]([C@H](n5(ccc(N)nc5=O))O6)O)O)" "CPD-23449" "sulfo-bis(guanylyl molybdopterin) cofactor" ["sulfo-bis(molybdopterin guanine dinucleotide)molybdenum cofactor", "MoS(Dtpp-mGDP)2", "sulfo-bis-MGD", "sulfo-bis(molybdopterin guanine dinucleotide)molybdenum", "sulfo-molybdo-bis(pyranopterin guanine dinucleotide)", "sulfo-mo-bis(molybdopterin guanine dinucleotide)", "sulfo-Mo-bisPGD", "sulfo-Mo-bis(pyranopterin guanosine dinucleotide)"] null null -4 "C(OP([O-])(=O)OP([O-])(=O)OC[C@H]8(O[C@H]%10(Nc%11(nc(N)[nH]c(=O)c(N[C@@H](C9(\S[Mo]4([a bis(guanylyl molybdopterin) cofactor chaperone])(=S)(SC5(/[C@@H](COP([O-])(=O)OP(=O)([O-])OC[C@@H]1([C@@H](O)[C@@H](O)[C@@H](O1)n2(cnc3(c(=O)[nH]c(N)nc23))))O[C@@H]6([C@H](C(\S4)=5)Nc7(c(=O)[nH]c(N)nc(N6)7))))SC\8=9))%10)%11))))[C@@H]%12([C@@H](O)[C@@H](O)[C@@H](O%12)n%13(cnc%14(c%13nc(N)[nH]c(=O)%14)))" "CPD-23504" "darobactin" [] "C47H55N11O12" 966.018 0 "C(N)CC[C@H]6(c1(ccc2(c(c[nH]c(c1)2)[C@H]4(Oc3(cccc7(c3[nH]cc(C[C@H](N)C(N[C@@H](CC(=O)N)C(=O)NC4C(=O)N[C@@H](CO)C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)N[C@@H](Cc5(ccccc5))C(=O)O)6)=O)7))))))" "CPD-23531" "mechlorethamine" ["nitrogen mustard"] "C5H11NCl2" 156.055 0 "CN(CCCl)CCCl" @@ -2523,12 +2527,12 @@ "CPD-25003" "β-L-galactopyranose" ["β-L-galactose"] "C6H12O6" 180.157 0 "C([C@@H]1(O[C@@H]([C@H]([C@@H]([C@@H]1O)O)O)O))O" "CPD-25021" "β-D-rhamnopyranose" ["β-D-rhamnose"] "C6H12O5" 164.158 0 "C[C@@H]1([C@H]([C@@H]([C@@H]([C@@H](O1)O)O)O)O)" "CPD-25028" "α-D-xylopyranose" ["α-D-xylose"] "C5H10O5" 150.131 0 "C1(O[C@H](O)[C@H](O)[C@@H](O)[C@H](O)1)" -"CPD-25235" "N-(1-deoxy-D-fructos-1-yl)-L-leucine" ["deoxyfructosyl-L-leucine"] "C12H23NO7" 293.316 0 "CC(C)C[C@@H](C(=O)[O-])[NH2+]CC(=O)[C@@H](O)[C@H](O)[C@H](O)CO" -"CPD-25236" "N-(1-deoxy-D-fructos-1-yl)-L-valine" ["fructosylvaline"] "C11H21NO7" 279.289 0 "CC(C)[C@@H](C(=O)[O-])[NH2+]CC(=O)[C@@H](O)[C@H](O)[C@H](O)CO" -"CPD-25240" "N1-(1-deoxy-D-fructos-1-yl)-L-lysine" ["Nα-(D-fructosyl)-L-lysine"] "C12H24N2O7" 308.331 0 "C(N[C@H](C(=O)[O-])CCCC[NH3+])C(=O)[C@@H](O)[C@H](O)[C@@H](CO)O" -"CPD-25241" "N-(1-deoxy-D-fructos-1-yl)-L-alanine" ["deoxyfructosyl-L-alanine"] "C9H17NO7" 251.236 0 "C[C@@H](C(=O)[O-])[NH2+]CC(=O)[C@@H](O)[C@H](O)[C@H](O)CO" -"CPD-25244" "an N-(1-deoxy-D-fructos-1-yl)amine" [] null null 0 "C([R])NCC(=O)[C@@H](O)[C@H](O)[C@H](O)CO" -"CPD-25248" "N-(1-deoxy-D-fructos-1-yl)-L-glutamine" ["deoxyfructosyl-L-glutamine", "santhopine"] "C11H20N2O8" 308.288 0 "C([NH2+][C@@H](CCC(N)=O)C(=O)[O-])C(=O)[C@@H](O)[C@H](O)[C@H](O)CO" +"CPD-25235" "N-(1-deoxy-D-fructos-1-yl)-L-leucine" ["deoxyfructosyl-L-leucine"] "C12H23NO7" 293.316 0 "CC(C)C[C@@H](C(=O)[O-])[NH2+]C[C@@]1(O)(OC[C@@H](O)[C@@H](O)[C@H](O)1)" +"CPD-25236" "N-(1-deoxy-D-fructos-1-yl)-L-valine" ["fructosylvaline"] "C11H21NO7" 279.289 0 "CC(C)[C@@H](C(=O)[O-])[NH2+]C[C@@]1(O)(OC[C@@H](O)[C@@H](O)[C@H](O)1)" +"CPD-25240" "N1-(1-deoxy-D-fructos-1-yl)-L-lysine" ["Nα-(D-fructosyl)-L-lysine"] "C12H25N2O7" 309.339 1 "C([C@@]1(O)(OC[C@@H](O)[C@@H](O)[C@H](O)1))[NH2+][C@H](C(=O)[O-])CCCC[NH3+]" +"CPD-25241" "N-(1-deoxy-D-fructos-1-yl)-L-alanine" ["deoxyfructosyl-L-alanine"] "C9H17NO7" 251.236 0 "C[C@@H](C(=O)[O-])[NH2+]C[C@@]1(O)(OC[C@@H](O)[C@@H](O)[C@H](O)1)" +"CPD-25244" "an N-(1-deoxy-D-fructos-1-yl)amine" ["a fructosamine"] null null 1 "C([R])[NH2+]CC(=O)[C@@H](O)[C@H](O)[C@H](O)CO" +"CPD-25248" "N-(1-deoxy-D-fructos-1-yl)-L-glutamine" ["deoxyfructosyl-L-glutamine", "santhopine"] "C11H20N2O8" 308.288 0 "C([C@@]1(O)(OC[C@@H](O)[C@@H](O)[C@H](O)1))[NH2+][C@@H](CCC(N)=O)C(=O)[O-]" "CPD-253" "4,5-seco-dopa" ["4-(L-alanin-3-yl)-2-hydroxy-cis,cis-muconate 6-semialdehyde"] "C9H10NO6" 228.181 -1 "C(=O)\C=C(C[C@H]([NH3+])C(=O)[O-])/C=C(C([O-])=O)/O" "CPD-25317" "(L-valyl)adenylate" [] "C15H23N6O8P" 446.356 0 "CC(C)[C@H]([NH3+])C(OP([O-])(OC[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](O)3))=O)=O" "CPD-25375" "waldiomycin" [] "C38H34O13" 698.679 -4 "C[C@@H]6([C@@H](OC(=O)/C=C/C=C/C=C/[C@H]1([C@H](C)O[C@@](C(=O)[O-])(C)O1))CC[C@H](c5(ccc4(c(c3(c(ccc2(c(C([C@@H]([O-])[C@@]([O-])(C)C2)=O)3))c(c4c5[O-])=O))=O)))O6)" @@ -2538,11 +2542,12 @@ "CPD-25513" "(L-tryrosyl)adenylate" ["L-tryrosyl-AMP", "L-tryrosyl-adenylate"] "C19H23N6O9P" 510.399 0 "C(OP(OC([C@H](Cc1(ccc(O)cc1))[NH3+])=O)(=O)[O-])[C@H]4(O[C@@H](n2(c3(c(nc2)c(N)ncn3)))[C@H](O)[C@H](O)4)" "CPD-25639" "a mannosylerythritol lipid" [] null null 0 "C([R2])C(=O)OC1([C@H](OC(=O)C[R1])[C@H](OC[C@@H]([C@H](O)CO)O)O[C@H](CO[R4])[C@@H](O[R3])1)" "CPD-25747" "2-amino-3-carboxy-1,4-naphthoquinone" [] "C11H7NO4" 217.181 0 "c1(ccc2(c(c(c(C(=O)[O-])c(c(c1)2)=O)[NH3+])=O))" +"CPD-258" "2-nitrophenol" ["o-nitrophenol"] "C6H4NO3" 138.102 -1 "c1(ccc(c(c1)[N+](=O)[O-])[O-])" "CPD-25849" "2-methylcitrate" ["2-hydroxybutane-1,2,3-tricarboxylate", "2-methylcitric acid"] "C7H7O7" 203.128 -3 "CC(C(=O)[O-])C(O)(CC(=O)[O-])C(=O)[O-]" "CPD-25858" "homocysteine" ["2-amino-4-mercaptobutyric acid"] "C4H9NO2S" 135.181 0 "C(S)CC(C(=O)[O-])[NH3+]" "CPD-25891" "ferricrocin" [] "C28H44N9O13Fe" 770.555 0 "CC4(=[O+][Fe-3]1236(ON(CCC[C@@H]5(NC(=O)[C@H](CCCN(C(C)=[O+]1)O2)NC(=O)CNC(=O)[C@H](CO)NC(=O)CNC(=O)[C@H](CCCN(O3)4)NC(=O)5))C(=[O+]6)C))" "CPD-259" "4-aminophenol" ["4-hydroxyaniline", "p-aminophenol", "4-aminobenzenol", "p-hydroxyaniline", "p-aminobenzenol"] "C6H7NO" 109.127 0 "c1(cc(ccc1N)O)" -"CPD-26024" "N-(1-deoxy-D-fructos-1-yl)-L-asparagine" ["fructosylasparagine", "fructose-L-asparagine", "D-fructose-L-asparagine"] "C10H18N2O8" 294.261 0 "C([NH2+][C@@H](CC(N)=O)C(=O)[O-])C(=O)[C@@H](O)[C@H](O)[C@H](O)CO" +"CPD-26024" "N-(1-deoxy-D-fructos-1-yl)-L-asparagine" ["fructosylasparagine", "fructose-L-asparagine", "D-fructose-L-asparagine"] "C10H18N2O8" 294.261 0 "C([C@@]1(O)(OC[C@@H](O)[C@@H](O)[C@H](O)1))[NH2+][C@@H](CC(N)=O)C(=O)[O-]" "CPD-26189" "ornidazole" ["1-(2-hydroxy-3-chloropropyl)-2-methyl-5-nitroimidazole", "1-(3-chloro-2-hydroxypropyl)-2-methyl-5-nitroimidazole", "alpha-(Chlormethyl)-2-methyl-5-nitro-imidazol-1-aethanol", "alpha-(chloromethyl)-2-methyl-5-nitro-1H-imidazole-1-ethanol", "ornidazol", "ornidazole", "ornidazolum", "Ro 7-0207"] "C7H10N3O3Cl" 219.627 0 "Cc1(ncc([N+](=O)[O-])n(CC(CCl)O)1)" "CPD-26204" "CDP-glycerol" ["rac-CDP-glycerol"] "C12H19N3O13P2" 475.242 -2 "C(O)C(O)COP(OP(OC[C@@H]2([C@H]([C@H]([C@H](n1(ccc(N)nc1=O))O2)O)O))(=O)[O-])([O-])=O" "CPD-26208" "glycerophosphoinositol" ["1-(sn-glycerophospho)-1D-myo-inositol", "GPI", "1-glyceryl-1-myo-Inosityl Phosphate"] "C9H18O11P" 333.208 -1 "C(O)C(O)COP([O-])(O[C@H]1([C@H](O)[C@@H](O)[C@H](O)[C@@H](O)[C@@H](O)1))=O" @@ -2575,6 +2580,11 @@ "CPD-26635" "albicidin" ["4-[[4-[[4-[[(2S)-3-cyano-2-[[4-[[(E)-3-(4-hydroxyphenyl)-2-methylprop-2-enoyl]amino]benzoyl]amino]propanoyl]amino]benzoyl]amino]-2-hydroxy-3-methoxybenzoyl]amino]-2-hydroxy-3-methoxybenzoate"] "C44H37N6O12" 841.809 -1 "CC(/C(Nc1(ccc(cc1)C(N[C@@H](CC#N)C(Nc4(ccc(C(Nc3(ccc(C(Nc2(ccc(C(=O)[O-])c(c2OC)O))=O)c(c3OC)O))=O)cc4))=O)=O))=O)=C\c5(ccc(cc5)O)" "CPD-26676" "S-lactoylglutathione hemithioacetal" [] "C13H20N3O8S" 378.376 -1 "CC(=O)C(O)SC[C@@H](C(NCC([O-])=O)=O)NC(=O)CC[C@H]([NH3+])C([O-])=O" "CPD-26678" "hypothiocyanous acid" ["HOSCN", "nitrilomethane-SO-thioperoxol", "hypothiocyanite"] "CHNOS" 75.085 0 "C(SO)#N" +"CPD-26685" "adenylyl MoO2(OH)-molybdopterin cofactor" ["MoCo-AMP (dioxo)", "adenylated molybdenum cofactor (dioxo)"] "C20H23N10O15P2S2Mo" 865.467 -3 "C(OP(OP(=O)([O-])OC[C@@H]1(C4(\S[Mo-](=O)(=O)(O)SC(/[C@H]2([C@@H](O1)Nc3(c(N2)c(=O)[nH]c(N)n3)))=4)))(=O)[O-])[C@H]7(O[C@@H](n5(c6(c(nc5)c(N)ncn6)))[C@H](O)[C@H](O)7)" +"CPD-26686" "adenylyl MoO3-molybdopterin cofactor" ["MoCo-AMP (trioxo)", "adenylated molybdenum cofactor (trioxo)"] "C20H22N10O15P2S2Mo" 864.459 -4 "C(OP(OP(=O)([O-])OC[C@@H]1(C4(\S[Mo-2](=O)(=O)(=O)SC(/[C@H]2([C@@H](O1)Nc3(c(N2)c(=O)[nH]c(N)n3)))=4)))(=O)[O-])[C@H]7(O[C@@H](n5(c6(c(nc5)c(N)ncn6)))[C@H](O)[C@H](O)7)" +"CPD-26731" "N-(1-deoxy-D-fructopyranos-1-yl)glycine" ["N-(1-deoxy-D-fructos-1-yl)glycine", "deoxyfructosylglycine", "fructoseglycine"] "C8H15NO7" 237.209 0 "C([NH2+]CC(=O)[O-])[C@@]1(O)(OC[C@@H](O)[C@@H](O)[C@H](O)1)" +"CPD-26745" "a viologen" [] null null 2 "c1([n+]([R])ccc(c1)c2(cc[n+]([R])cc2))" +"CPD-26748" "GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-meso-DAP" ["GlcNAc-anhMurNAc-tripeptide"] "C34H52N6O19" 848.814 -2 "C[C@H](NC([C@H](O[C@@H]2([C@@H](NC(=O)C)C3(OCC([C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](NC(=O)C)1))2)O3)))C)=O)C(N[C@H](CCC(=O)N[C@@H](CCCC(C(=O)[O-])[NH3+])C(=O)[O-])C(=O)[O-])=O" "CPD-27" "phosphinate" ["hypophosphite"] "H2O2P" 64.988 -1 "[O-]P=O" "CPD-270" "an N-acyl-D-glucosamine" [] null null 0 "C(N[C@H]1([C@@H](O[C@@H]([C@H]([C@@H]1O)O)CO)O))(=O)[R]" "CPD-273" "N-glycolylneuraminate" ["N-glycoloyl-neuraminate", "N--glycolylneuraminic acid", "Neu5Gc"] "C11H18NO10" 324.264 -1 "C(O)[C@@H](O)[C@@H](O)[C@@H]1(OC(O)(C([O-])=O)C[C@H](O)[C@@H](NC(CO)=O)1)" @@ -2692,7 +2702,7 @@ "CPD-389" "N-carbamoyl-2-oxoglycine" ["oxaluric acid", "monooxalylurea", "ureido(oxo)acetic acid", "carbamyl oxamate", "oxalureate", "N-carbamoyloxamate", "2-(carbamoylamino)-2-oxoacetate", "oxalurate"] "C3H3N2O4" 131.068 -1 "C([O-])(=O)C(=O)NC(=O)N" "CPD-3923" "a nylon-6 linear oligomer" ["[N-(6-aminohexanoyl)]n"] null null -1 "C(CCCCC(NCCCCCC(=O)NCCCCCC([O-])=O)=O)NC(=O)CCCCC[R1]" "CPD-397" "S-methyl-L-methionine" ["S-methylmethionine"] "C6H14NO2S" 164.242 1 "C[S+](CC[C@H]([NH3+])C(=O)[O-])C" -"CPD-4" "molybdopterin" ["MPT", "pyranopterin-dithiolate", "ene-dithiol pyranopterin", "H2Dtpp-mP", "[(5aR,8R,9aR)-2-amino-4-oxo-6,7-disulfanyl-3,5,5a,8,9a,10-hexahydro-4H-pyrano[3,2-g]pteridin-8-yl]methyl dihydrogen phosphate", "H2Dtpp-mP"] "C10H11N5O6PS2" 392.321 -3 "C(OP([O-])(=O)[O-])[C@@H]1(C(\[S-])=C([C@H]2([C@@H](O1)Nc3(c(N2)c(=O)[nH]c(N)n3)))\S)" +"CPD-4" "molybdopterin" ["MPT", "pyranopterin-dithiolate", "ene-dithiol pyranopterin", "H2Dtpp-mP", "[(5aR,8R,9aR)-2-amino-4-oxo-6,7-disulfanyl-3,5,5a,8,9a,10-hexahydro-4H-pyrano[3,2-g]pteridin-8-yl]methyl dihydrogen phosphate", "H2Dtpp-mP"] "C10H12N5O6PS2" 393.328 -2 "C(OP([O-])(=O)[O-])[C@@H]1(C(\S)=C([C@H]2([C@@H](O1)Nc3(c(N2)c(=O)[nH]c(N)n3)))\S)" "CPD-400" "guaiacol" ["a hydroxlyated aryl lignin fragment", "O-methoxyphenol", "catechol monomethyl ether", "1-hydroxy-2-methoxybenzene", "2-hydroxyanisole", "o--methoxyphenol", "2-methoxyphenol"] "C7H8O2" 124.139 0 "COc1(ccccc1O)" "CPD-404" "N-methyl-L-glutamate" ["N-methyl-L-glutamic acid", "NMG", "N-methyl-glutamic acid", "N-methyl-glutamate"] "C6H10NO4" 160.149 -1 "C[NH2+][C@H](C(=O)[O-])CCC([O-])=O" "CPD-405" "a phosphatidyl-N-methylethanolamine" [] null null 0 "C[NH2+]CCOP([O-])(=O)OC[C@@H](COC(=O)[R1])OC(=O)[R2]" @@ -2700,7 +2710,7 @@ "CPD-415" "a 1-long-chain acyl-glycerone 3-phosphate" [] null null -2 "C(CCCCCCCCCCCC(OCC(COP([O-])(=O)[O-])=O)=O)[R]" "CPD-421" "N2-succinyl-L-arginine" ["N2-succinylarginine"] "C10H17N4O5" 273.268 -1 "C(CC[C@H](NC(=O)CCC([O-])=O)C(=O)[O-])NC(N)=[NH2+]" "CPD-4211" "prenyl diphosphate" ["dimethylallyl-diphosphate", "prenyl-diphosphate", "δ-prenyl diphosphate", "δ2-isopentenyl-diphosphate", "2-isopentenyl diphosphate", "dimethylallyl diphosphate", "DPP", "di-CH3-allyl-PPi", "dimethylallyl-PP", "dimethylallyl-PPi", "DMPP", "dimethylallyl pyrophosphate", "3-methylbut-2-en-1-yl diphosphate", "gamma,gamma-dimethylallyl pyrophosphate"] "C5H9O7P2" 243.069 -3 "CC(C)=CCOP(=O)([O-])OP(=O)([O-])[O-]" -"CPD-424" "N-acetyl-L-histidine" ["N2-Acetylhistidine", "L-Histidine, N-acetyl-", "N-Acetylhistidine", "N-α-acetyl-L-histidine"] "C8H10N3O3" 196.185 -1 "CC(=O)N[C@@H](Cc1(c[nH]cn1))C(=O)[O-]" +"CPD-424" "N-acetyl-L-histidine" ["N2-Acetylhistidine", "N-acetylhistidine", "N-α-acetyl-L-histidine"] "C8H10N3O3" 196.185 -1 "CC(=O)N[C@@H](Cc1(c[nH]cn1))C(=O)[O-]" "CPD-426" "an N-acylglycine" [] null null -1 "C(NCC(=O)[O-])([R])=O" "CPD-427" "an N-acyl-L-glutamine" [] null null -1 "C(=O)([R])N[C@H](C([O-])=O)CCC(=O)N" "CPD-43" "1,1,1-trichloro-2,2-bis(4-chlorophenyl)ethane" [] "C14H9Cl5" 354.49 0 "C(C(c1(ccc(cc1)Cl))c2(ccc(cc2)Cl))(Cl)(Cl)Cl" @@ -2732,7 +2742,7 @@ "CPD-504" "a 1-monoglyceride" ["a monoglyceride", "a 1-acylglycerol", "a 1-MAG", "a 1-monoacyl-glycerol"] null null 0 "C(O)C(COC(=O)[R])O" "CPD-507" "β-D-cellobiose 6'-phosphate" ["β-D-cellobiose-6'-p", "6-phospho-β-D-glucosyl-(1,4)-β-D-glucose"] "C12H21O14P" 420.263 -2 "C(O)[C@H]1(O[C@H]([C@@H]([C@H]([C@@H]1O[C@H]2([C@@H]([C@H]([C@@H]([C@H](O2)COP([O-])(=O)[O-])O)O)O))O)O)O)" "CPD-510" "α-D-glucuronate 1-phosphate" ["glucuronate-1-P", "glucuronate-1-phosphate", "D-glucuronate-1-P", "D-glucuronate-1-phosphate", "1-phospho-α-D-glucuronate"] "C6H8O10P" 271.097 -3 "C([C@H]1(O[C@@H]([C@@H]([C@H]([C@@H]1O)O)O)OP([O-])([O-])=O))(=O)[O-]" -"CPD-511" "pantetheine" ["pantotheine"] "C11H22N2O4S" 278.366 0 "CC([C@@H](O)C(=O)NCCC(NCCS)=O)(C)CO" +"CPD-511" "pantetheine" ["pantotheine", "D-Pantetheine", "(R)-Pantetheine"] "C11H22N2O4S" 278.366 0 "CC([C@@H](O)C(=O)NCCC(NCCS)=O)(C)CO" "CPD-5161" "α-D-Man-(1→3)-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["α-D-mannosyl-(1→3)-β-D-mannosyl-(1→4)-N-acetyl-β-D-glucosaminyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphosphodolichol", "a (mannosyl)2-(N-acetylglucosaminyl)2-diphosphodolichol"] "C108H178N2O27P2" 1998.539 -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(CCOP(OP(O[C@H]4(O[C@H](CO)[C@@H](O[C@H]3([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO)O[C@@H]2([C@@H](O)[C@@H](O)[C@@H]([C@H](O2)CO)O)))[C@@H](CO)O3)O))[C@H](O)[C@@H](NC(=O)C)4))(=O)[O-])(=O)[O-])C" "CPD-5162" "α-D-Man-(1→3)-[α-D-Man-(1→6)]-α-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["α-D-mannosyl-(1→3)-[α-D-mannosyl-(1→6)]-α-D-mannosyl-(1→4)-N-acetyl-β-D-glucosaminyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphosphodolichol", "a (mannosyl)3-(N-acetylglucosaminyl)2-diphosphodolichol"] "C114H188N2O32P2" 2160.681 -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(CCOP(OP(O[C@H]5(O[C@H](CO)[C@@H](O[C@H]4([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO)O))O[C@@H]3([C@@H](O)[C@@H](O)[C@@H]([C@H](O3)CO)O)))[C@@H](CO)O4)O))[C@H](O)[C@@H](NC(=O)C)5))(=O)[O-])(=O)[O-])C" "CPD-5163" "a (mannosyl)4-(N-acetylglucosaminyl)2-diphosphodolichol" ["an {α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol"] "C120H198N2O37P2" 2322.823 -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CC[C@@H](CCOP(OP(OC1(O[C@H](CO)[C@H]([C@H](O)[C@@H](NC(C)=O)1)O[C@H]2([C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@H]3([C@H]([C@H]([C@@H]([C@H](O3)CO[C@@H]4([C@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O))O)O[C@@H]5([C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@@H]6([C@H]([C@H]([C@@H]([C@H](O6)CO)O)O)O)))O))O)NC(=O)C)))(=O)[O-])(=O)[O-])C" @@ -2765,7 +2775,7 @@ "CPD-560" "5-(methylsulfanyl)-D-ribose" ["5-methylthio-D-ribose", "5-methylthioribose", "S-methyl-5-thio-D-ribofuranose", "S-methyl-5-thio-D-ribose"] "C6H12O4S" 180.218 0 "CSC[C@H]1(OC([C@@H]([C@@H]1O)O)O)" "CPD-5601" "N-monomethylethanolamine" [] "C3H10NO" 76.118 1 "C[NH2+]CCO" "CPD-5602" "N-dimethylethanolamine" [] "C4H12NO" 90.145 1 "C[NH+](C)CCO" -"CPD-563" "a 1-(1-alkenyl)-sn-glycero-3-phosphocholine" ["a 1-alkenyl-sn-glycero-3-phosphocholine", "a 1-alkenylglycerophosphocholine", "a 1-O-alk-1-enyl-glycero-3-phosphocholine", "a 1-O-(alk-1-enyl)glycero-3-phosphocholine"] null null 0 "C(/[R])=C\OC[C@@H](O)COP([O-])(=O)OCC[N+](C)(C)C" +"CPD-563" "a 1-O-(1Z-alk-1-enyl)-sn-glycero-3-phosphocholine" ["a 1-(Z)-alk-1-enyl-sn-glycero-3-phosphocholine", "a 1-O-(Z)-alk-1-enyl-sn-glycero-3-phosphocholine"] null null 0 "C(\[R])=C\OC[C@@H](O)COP([O-])(=O)OCC[N+](C)(C)C" "CPD-564" "S-ribosyl-L-homocysteine" ["Ribose-5-S-homocysteine", "S-D-ribosyl-L-homocysteine", "ribose-5-S-homocysteine", "S-ribosylhomocysteine", "S-(5-deoxy-D-ribos-5-yl)-L-homocysteine"] "C9H17NO6S" 267.296 0 "C(SC[C@H]1(OC(O)[C@H](O)[C@H](O)1))C[C@@H](C(=O)[O-])[NH3+]" "CPD-5662" "4,5-secobiotin" ["9-mercaptodesthiobiotin", "9-mercaptodethiobiotin", "6-[2-oxo-5-(sulfanylmethyl)imidazolidin-4-yl]hexanoate"] "C10H17N2O3S" 245.316 -1 "C(C1(C(NC(N1)=O)CCCCCC(=O)[O-]))S" "CPD-568" "N1-acetylspermidine" ["an N-acetylspermidine"] "C9H23N3O" 189.3 2 "CC(=O)NCCC[NH2+]CCCC[NH3+]" @@ -2776,7 +2786,7 @@ "CPD-576" "an N-acyl-L-aspartate" [] null null -2 "C(N[C@H](C(=O)[O-])CC(=O)[O-])([R])=O" "CPD-58" "octopamine" ["1-(4-hydroxyphenyl)-2-aminoethanol", "p-hydroxyphenylethanolamine", "D,L-octopamine"] "C8H12NO2" 154.188 1 "C(C(c1(ccc(cc1)O))O)[NH3+]" "CPD-581" "N,N-Dimethylformamide" ["N,N-Dimethylmethanamide", "DMF"] "C3H7NO" 73.094 0 "CN(C)C=O" -"CPD-582" "guanylyl molybdenum cofactor" ["MGD", "MPT-GMP", "MoO2(OH)Dtpp-mGDP", "molybdopterin guanine dinucleotide"] "C20H22N10O15P2S2Mo" 864.459 -2 "C(OP(OP(=O)([O-])OC[C@H]2(O[C@H]1(Nc4(nc(N)[nH]c(=O)c(N[C@H]1C3(\S[Mo](=O)(=O)SC\2=3))4))))(=O)[O-])[C@H]7(O[C@@H](n5(c6(c(nc5)c(=O)[nH]c(N)n6)))[C@H](O)[C@H](O)7)" +"CPD-582" "guanylyl molybdenum cofactor" ["MGD", "MPT-GMP", "MoO2(OH)Dtpp-mGDP", "molybdopterin guanine dinucleotide"] "C20H23N10O16P2S2Mo" 881.467 -3 "C(OP(OP(=O)([O-])OC[C@H]2(O[C@H]1(Nc4(nc(N)[nH]c(=O)c(N[C@H]1C3(\S[Mo-](O)(=O)(=O)SC\2=3))4))))(=O)[O-])[C@H]7(O[C@@H](n5(c6(c(nc5)c(=O)[nH]c(N)n6)))[C@H](O)[C@H](O)7)" "CPD-5821" "(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline" ["(S)-5-hydroxy-2-oxo-4-ureido-2,5-dihydro-1H imidazole-5-carboxylate", "(S)-OHCU", "4-(carbamoylamino)-5-hydroxy-2-oxo-2,5-dihydro-1H-imidazole-5-carboxylate"] "C5H5N4O5" 201.118 -1 "C([C@]1(O)(NC(=O)/N=C1/NC(N)=O))(=O)[O-]" "CPD-5861" "2-deoxy-D-galactose" ["2-deoxy-D-lyxohexose", "deoxygalactose"] "C6H12O5" 164.158 0 "C(O)[C@@H]1([C@H](O)[C@H](O)CC(O)O1)" "CPD-593" "methylguanidinium" ["methylguanidine"] "C2H8N3" 74.105 1 "CNC(N)=[NH2+]" @@ -2878,8 +2888,8 @@ "CPD-7999" "3-phenyllactate" ["3-phenyllactic acid"] "C9H9O3" 165.168 -1 "C(C(Cc1(ccccc1))O)([O-])=O" "CPD-804" "(4S)-4-hydroxy-2-oxoheptanedioate" ["4-hydroxy-2-ketoheptane-1,7-dioate", "2-oxo-4-hydroxyhepta-1,7-dioate", "4-hydroxy-2-oxo-heptanedioate", "4-hydroxy-2-ketopimelate", "2-keto-4-hydroxypimelate"] "C7H8O6" 188.137 -2 "C(CC[C@H](O)CC(C([O-])=O)=O)([O-])=O" "CPD-809" "biuret" ["allophanamide", "carbamylurea", "imidodicarbonic diamide"] "C2H5N3O2" 103.08 0 "C(=O)(N)NC(=O)N" -"CPD-8122" "molybdopterin adenine dinucleotide" ["adenylated molybdopterin", "H2Dtpp-mADP", "molybdopterin-AMP", "adenylyl-molybdopterin"] "C20H23N10O12P2S2" 721.529 -3 "C(OP(=O)([O-])OP(OC[C@H]2(O[C@H]1(Nc3(nc([nH]c(=O)c(N[C@H]1C(\S)=C2\[S-])3)N))))(=O)[O-])[C@H]6(O[C@@H](n4(c5(c(nc4)c(N)ncn5)))[C@H](O)[C@H](O)6)" -"CPD-8123" "MoO2-molybdopterin cofactor" ["MoCo (dioxyo)", "molybdenum cofactor (dioxyo)", "MoO2(OH)Dtpp-mP", "{[(5aR,8R,9aR)-2-amino-4-oxo-6,7-di(sulfanyl-κS)-1,5,5a,8,9a,10-hexahydro-4H-pyrano[3,2-g]pteridin-8-yl]methyl dihydrogenato(2-) phosphate}(dioxo)molybdate", "MoO2-Mo-MPT"] "C10H10N5O8PS2Mo" 519.251 -2 "C(OP([O-])(=O)[O-])[C@@H]1(C4(\S[Mo](=O)(=O)SC(/[C@H]2([C@@H](O1)Nc3(c(N2)c(=O)[nH]c(N)n3)))=4))" +"CPD-8122" "adenylyl-molybdopterin" ["adenylated molybdopterin", "H2Dtpp-mADP", "molybdopterin-AMP", "molybdopterin adenine mononucleotide"] "C20H24N10O12P2S2" 722.537 -2 "C(OP(=O)([O-])OP(OC[C@H]2(O[C@H]1(Nc3(nc([nH]c(=O)c(N[C@H]1C(\S)=C2\S)3)N))))(=O)[O-])[C@H]6(O[C@@H](n4(c5(c(nc4)c(N)ncn5)))[C@H](O)[C@H](O)6)" +"CPD-8123" "MoO2-molybdopterin cofactor" ["MoO2Dtpp-mP", "MoO2-Mo-MPT"] "C10H10N5O8PS2Mo" 519.251 -2 "C(OP([O-])(=O)[O-])[C@@H]1(C4(\S[Mo](=O)(=O)SC(/[C@H]2([C@@H](O1)Nc3(c(N2)c(=O)[nH]c(N)n3)))=4))" "CPD-8147" "3-nitropropanoate" ["3-nitropropionate", "3-nitro-1-propionate"] "C3H4NO4" 118.069 -1 "C(CC[N+](=O)[O-])(=O)[O-]" "CPD-8179" "2,4-dinitrophenol" ["1-hydroxy-2,4-dinitrobenzene", "2,4-DNP", "α-dinitrophenol"] "C6H3N2O5" 183.1 -1 "c1(cc(c(cc1[N+](=O)[O-])[N+](=O)[O-])[O-])" "CPD-8190" "a [phospholipid] methylene fatty acid" [] null null 0 "CCC(CCCCCCCCC(=O)[a phospholipid])=C" @@ -2953,23 +2963,23 @@ "CPD-9092" "a bacteriochlorophyll c" [] null null -1 "C([R2])([R1])CC6(\C7(/C=c4(c(C[R3])c2(C(=O)[CH-]C3(\C1(/[C@@H](CCC(=O)OC/C=C(C)/CC/C=C(C)/CCC=C(C)C)[C@H](C)C(\N=1)=C(C)\c5(c(C)c(C(O)C)c(n([Mg]n(c\2=3)4)5)\C=C(C(/C)=6)/N=7)))))))" "CPD-9093" "a bacteriochlorophyll d" [] null null -1 "C([R2])([R1])CC6(\C7(/C=c4(c(C[R3])c2(C(=O)[CH-]C3(\C1(/[C@@H](CCC(=O)OC/C=C(C)/CC/C=C(C)/CCC=C(C)C)[C@H](C)C(\N=1)=C\c5(c(C)c(C(O)C)c(n([Mg]n(c\2=3)4)5)\C=C(C(/C)=6)/N=7)))))))" "CPD-9094" "a bacteriochlorophyll e" [] null null -1 "C([R2])([R1])CC6(/C7(\C=c4(c(C[R3])c2(C(=O)[CH-]C3(\C1(/[C@@H](CCC(=O)OC/C=C(C)/CC/C=C(C)/CCC=C(C)C)[C@H](C)C(\N=1)=C(C)\c5(c(C)c(C(O)C)c(n([Mg]n(c\2=3)4)5)\C=C(C(/C=O)=6)/N=7)))))))" -"CPD-9115" "2-nitrophenyl-β-galactoside" ["2-nitrophenylgalactoside", "ONPG", "o-nitrophenyl-β-galactoside"] "C12H15NO8" 301.252 0 "c1(ccc(c(c1)[N+](=O)[O-])OC2([C@@H]([C@H]([C@H]([C@@H](CO)O2)O)O)O))" +"CPD-9115" "2-nitrophenyl β-D-galactoside" ["2-nitrophenyl β-D-galactopyranoside", "ortho-nitrophenyl β-D-galactoside", "o-nitrophenyl β-D-galactoside", "o-NPGal", "ONP-β-D-galactoside"] "C12H15NO8" 301.252 0 "c1(cc([N+](=O)[O-])c(cc1)O[C@@H]2(O[C@H](CO)[C@@H]([C@H](O)[C@@H](O)2)O))" "CPD-9117" "phenyl-β-galactoside" ["phenyl-β-D-galactopyranoside"] "C12H16O6" 256.255 0 "C(O)[C@@H]2([C@H](O)[C@H](O)[C@@H](O)C(Oc1(ccccc1))O2)" "CPD-9138" "2,4,6-trinitrotoluene" [] "C7H5N3O6" 227.133 0 "Cc1(c([N+](=O)[O-])cc([N+](=O)[O-])cc([N+]([O-])=O)1)" -"CPD-9175" "N-acetyl-L-cysteine" ["acetylcysteine"] "C5H8NO3S" 162.183 -1 "CC(N[C@H](C(=O)[O-])CS)=O" +"CPD-9175" "N-acetyl-L-cysteine" ["acetylcysteine", "N-acetylcysteine"] "C5H8NO3S" 162.183 -1 "CC(N[C@H](C(=O)[O-])CS)=O" "CPD-9190" "2-O-(α-D-glucopyranosyl)-D-glycerate" ["glucosylglycerate", "2-(α-D-glucopyranosyl)-D-glycerate"] "C9H15O9" 267.212 -1 "C(O)[C@@H](O[C@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](O)1))C(=O)[O-]" "CPD-9195" "ampicillin" ["aminobenzylpenicillin", "ampicillin Acid", "ampicillin Anhydrous", "D-(-)-6-(alpha-Aminophenylacetamido)penicillanic acid", "D-(-)-Ampicillin", "6-(D-(2-Amino-2-phenylacetamido))-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo(3.2.0)heptane-2-carboxylic acid", "anhydrous ampicillin"] "C16H19N3O4S" 349.404 0 "CC1(C)([C@H](C(=O)[O-])N2([C@H](S1)[C@@H](C(=O)2)NC(=O)[C@H]([NH3+])c3(ccccc3)))" "CPD-9196" "penicillin V" ["phenoxymethylpenicillin"] "C16H17N2O5S" 349.381 -1 "CC2(C)([C@H](C(=O)[O-])N1(C([C@H]([C@H]1S2)NC(COc3(ccccc3))=O)=O))" -"CPD-9218" "carbenicillin" ["carboxybenzylpenicillin", "pyopen"] "C17H16N2O6S" 376.383 -2 "CC2(C)([C@H](C(=O)[O-])N1(C([C@H]([C@H]1S2)NC(C(C(=O)[O-])c3(ccccc3))=O)=O))" +"CPD-9218" "carbenicillin" ["carboxybenzylpenicillin", "pyopen"] "C17H16N2O6S" 376.383 -2 "CC2(C)([C@H](C(=O)[O-])N1(C([C@H]([C@H]1S2)NC(=O)C(C(=O)[O-])c3(ccccc3))=O))" "CPD-9224" "oxacillin" ["Micropenin", "Prostaphlin", "Resistopen", "Bristopen", "Stapenor", "Oxabel", "Staphcillin V"] "C19H18N3O5S" 400.428 -1 "Cc2(c(c(c1(ccccc1))no2)C(N[C@@H]3(C(N4([C@@H](C(=O)[O-])C(C)(C)S[C@H]34))=O))=O)" "CPD-9225" "cloxacillin" ["Syntarpen", "Methocillin S", "Clossacillina [DCIT]", "Spectrum 001345"] "C19H17N3O5SCl" 434.873 -1 "Cc2(c(c(c1(ccccc1Cl))no2)C(N[C@@H]3(C(N4([C@@H](C(=O)[O-])C(C)(C)S[C@H]34))=O))=O)" "CPD-9226" "dicloxacillin" ["dicloxacycline", "dicloxacilin", "maclicine"] "C19H16N3O5SCl2" 469.318 -1 "Cc2(c(c(c1(c(cccc1Cl)Cl))no2)C(N[C@@H]3(C(N4([C@@H](C(=O)[O-])C(C)(C)S[C@@H]34))=O))=O)" "CPD-9227" "cephalexin" ["Keflex", "Cefalexin", "Keflet", "Carnosporin", "Cefaleksin", "Cefaseptin", "Cephacillin", "Cephalexine", "Cephalexinum"] "C16H17N3O4S" 347.388 0 "CC2(\CS[C@@H]3([C@H](NC([C@H]([NH3+])c1(ccccc1))=O)C(=O)N(C(/C([O-])=O)=2)3))" "CPD-9228" "cephaloridine" ["Kefloridin", "Loridine", "Cephaloridinum", "Cefaloridin", "Cefalorizin", "Cepaloridin", "Cephaloridin", "Glaxoridin"] "C19H17N3O4S2" 415.481 0 "c1(cc[n+](cc1)CC2(\CS[C@@H]3([C@@H](C(N(C(/C(=O)[O-])=2)3)=O)NC(Cc4(cccs4))=O)))" "CPD-9229" "cephalothin" ["Cephalothinum", "Cefalothin", "Cephalotin", "Cefalotin", "Cemastin", "Coaxin", "Keflin", "Averon-1"] "C16H15N2O6S2" 395.424 -1 "CC(=O)OCC1(\CS[C@@H]2([C@@H](C(N(C(/C(=O)[O-])=1)2)=O)NC(Cc3(cccs3))=O))" -"CPD-9230" "cephalosporin 87/312" ["nitrocefin"] "C21H15N4O8S2" 515.491 -1 "C(=O)(NC3(C2(N(C(/C([O-])=O)=C(/C=C/c1(c([N+]([O-])=O)cc([N+](=O)[O-])cc1))/CS2)C(=O)3)))Cc4(sccc4)" "CPD-9231" "imipenem" ["N-formimidoylthienamycin"] "C12H16N3O4S" 298.336 -1 "C[C@@H](O)[C@H]1(C(=O)N2(C(\C(=O)[O-])=C(C[C@H]12)/SCCNC=N))" "CPD-9233" "cefoxitin" ["Mefoxitin", "Mefoxin", "Spectrum 001399"] "C16H16N3O7S2" 426.438 -1 "CO[C@]1(C(N2(C(/C(=O)[O-])=C(COC(N)=O)/CS[C@H]12))=O)NC(Cc3(cccs3))=O" +"CPD-9234" "nitrocefin" ["cephalosporin 87/312", "(7R)-3-((E)-2,4-Dinitrostyryl)-7-(2-thienylacetamido)-3-cephem-4-carboxylic acid"] "C21H15N4O8S2" 515.492 -1 "C(=O)(N[C@H]3([C@@H]2(N(C(/C([O-])=O)=C(/C=C/c1(c([N+]([O-])=O)cc([N+](=O)[O-])cc1))/CS2)C(=O)3)))Cc4(sccc4)" "CPD-9235" "aztreonam" ["(Z,)-2-((((2-Amino-4-thiazolyl)(((2S,3S,)-2-methyl-4-oxo-1-sulfo-3-azetidinyl)carbamoyl)methylene)amino)oxy)-2-methylpropionic acid", "Azactam", "AZT", "aztreonam", "aztreonamum", "Primbactam"] "C13H16N5O8S2" 434.418 -1 "C[C@@H]2(N(S(=O)(=O)[O-])C(=O)[C@@H](NC(C(/c1(nc([NH3+])sc1))=N/OC(C)(C)C([O-])=O)=O)2)" "CPD-9245" "palmitoleate" ["(9Z)-hexadec-9-enoate", "palmitoleic acid (16:1Δ9)", "palmitoleic acid", "(9Z)-hexadecenoic acid", "cis-9-hexadecenoic acid", "cis-9-hexadecenoate"] "C16H29O2" 253.404 -1 "CCCCCC\C=C/CCCCCCCC(=O)[O-]" "CPD-9247" "cis-vaccenate" ["cis-vaccenic acid", "(Z)-octadec-11-enoate", "(Z)-11-octadecenoic acid", "cis-11-octadecenoic acid", "cis-octadec-11-enoic acid"] "C18H33O2" 281.457 -1 "CCCCCC\C=C/CCCCCCCCCC(=O)[O-]" @@ -3456,7 +3466,6 @@ "CPD0-1812" "2-oleoylglycerol" ["2-mono-C18:1", "2-monoolein", "2-monooleoylglycerol", "2-glyceryl monooleate", "1,3-dihydroxypropan-2-yl oleate", "2-(9Z)-octadecenoylglycerol"] "C21H40O4" 356.545 0 "CCCCCCCC\C=C/CCCCCCCC(=O)OC(CO)CO" "CPD0-1815" "1,3-dioctanoylglycerol" ["1,3-diC8"] "C18H34O5" 330.464 0 "CCCCCCCC(=O)OCC(O)OC(=O)CCCCCCC" "CPD0-1816" "1,3-dioctanoyl-1,2,3-butanetriol" ["3-methyl-1,3-diC8"] "C20H38O5" 358.517 0 "CCCCCCCCC(=O)OC(C(O)OC(=O)CCCCCCC)C" -"CPD0-1882" "cytidylyl molybdenum cofactor (dioxo)" ["MCD", "MoO2Dtpp-mCDP", "Mo(VI)-molybdopterin cytosine dinucleotide", "MoO2-molybdopterin cytosine dinucleotide"] "C19H22N8O15P2S2Mo" 824.435 -2 "C(OP(OP(OC[C@H]2(O[C@H]1(Nc4(nc([nH]c(=O)c(N[C@H]1C3(\S[Mo](=O)(=O)SC\2=3))4)N))))([O-])=O)(=O)[O-])[C@@H]6([C@H]([C@H]([C@H](n5(ccc(N)nc5=O))O6)O)O)" "CPD0-1883" "5'-O-[N-(L-glutamyl)-sulfamoyl] adenosine" [] "C15H19N7O9S" 473.417 -2 "C(OS([N-]C([C@@H](N)CCC(=O)[O-])=O)(=O)=O)[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](O)3)" "CPD0-1884" "glutamyl-β-ketophosphonate-adenosine" [] "C16H22N6O9P" 473.358 -1 "C(OP(=O)([O-])CC([C@H](CCC(=O)[O-])[NH3+])=O)[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](O)3)" "CPD0-1885" "2-hydroxyethyldisulfide" ["dithiodiglycol"] "C4H10O2S2" 154.242 0 "C(O)CSSCCO" @@ -3586,7 +3595,7 @@ "CPD0-2123" "3-oxodecanoyl-CoA" [] "C31H48N7O18P3S" 931.738 -4 "CCCCCCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(=O)(OP(=O)(OC[C@@H]1([C@@H](OP([O-])(=O)[O-])[C@@H](O)[C@@H](O1)n3(c2(c(c(N)ncn2)nc3))))[O-])[O-]" "CPD0-2124" "ferroxamine" [] "C25H45N6O8Fe" 613.513 3 "CC(=O)N2(O[Fe+3]1(ON(CCCCCNC(=O)CCC(=O)N(O1)CCCCCN)C(=O)CCC(=O)NCCCCC2))" "CPD0-2133" "2-acyl-sn-glycero-3-phosphoglycerol (n-C18:0)" [] "C24H48O9P" 511.612 -1 "CCCCCCCCCCCCCCCCCC(O[C@@H](COP(OCC(O)CO)([O-])=O)CO)=O" -"CPD0-2134" "2-myristoleoyl-sn-glycero-3-phosphoglycerol" ["2-acyl-sn-glycero-3-phosphoglycerol (n-C14:1)"] "C20H38O9P" 453.489 -1 "CCCC\C=C/CCCCCCCC(O[C@@H](COP(OC[C@@H](O)CO)([O-])=O)CO)=O" +"CPD0-2134" "2-14:1-lysophosphatidylglycerol" ["2-acyl-sn-glycero-3-phosphoglycerol (n-C14:1)", "2-myristoleoyl-sn-glycero-3-phosphoglycerol"] "C20H38O9P" 453.489 -1 "CCCC\C=C/CCCCCCCC(O[C@@H](COP(OC[C@@H](O)CO)([O-])=O)CO)=O" "CPD0-2135" "(enterobacterial common antigen)2 undecaprenyl-diphosphate" [] "C103H162N6O37P2" 2138.378 -4 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(=O)([O-])OP(O[C@H]6(O[C@H](CO)[C@@H](O[C@@H]5(O[C@H](C(=O)[O-])[C@@H](O[C@H]4(O[C@H](C)[C@H](NC(C)=O)[C@H](O[C@H]3(O[C@H](CO)[C@@H](O[C@@H]2(O[C@H](C(=O)[O-])[C@@H](O[C@H]1(O[C@H](C)[C@H](NC(C)=O)[C@H](O)[C@@H](O)1))[C@H](O)[C@H](NC(C)=O)2))[C@H](O)[C@@H](NC(C)=O)3))[C@@H](O)4))[C@H](O)[C@H](NC(C)=O)5))[C@H](O)[C@@H](NC(C)=O)6))(=O)[O-]" "CPD0-2137" "a 1-hexadec-9-enoyl-sn-glycerol 3-phosphate" [] "C19H35O7P" 406.455 -2 "CCCCCC/C=C/CCCCCCCC(=O)OC[C@@H](O)COP(=O)([O-])[O-]" "CPD0-2138" "(enterobacterial common antigen)4-undecaprenyl diphosphate" [] "C151H234N12O67P2" 3351.497 -6 "CC(C)=CCCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(=O)([O-])OP(=O)([O-])O[C@H]%12(O[C@H](CO)[C@@H](O[C@@H]%11(O[C@H](C(=O)[O-])[C@@H](O[C@H]%10(O[C@H](C)[C@H](NC(C)=O)[C@H](O[C@H]9(O[C@H](CO)[C@@H](O[C@@H]8(O[C@H](C(=O)[O-])[C@@H](O[C@H]7(O[C@H](C)[C@H](NC(C)=O)[C@H](O[C@H]6(O[C@H](CO)[C@@H](O[C@@H]5(O[C@H](C(=O)[O-])[C@@H](O[C@H]4(O[C@H](C)[C@H](NC(C)=O)[C@H](O[C@H]3(O[C@H](CO)[C@@H](O[C@@H]2(O[C@H](C(=O)[O-])[C@@H](O[C@H]1(O[C@H](C)[C@H](NC(C)=O)[C@H](O)[C@@H](O)1))[C@H](O)[C@H](NC(C)=O)2))[C@H](O)[C@@H](NC(C)=O)3))[C@@H](O)4))[C@H](O)[C@H](NC(C)=O)5))[C@H](O)[C@@H](NC(C)=O)6))[C@@H](O)7))[C@H](O)[C@H](NC(C)=O)8))[C@H](O)[C@@H](NC(C)=O)9))[C@@H](O)%10))[C@H](O)[C@H](NC(C)=O)%11))[C@H](O)[C@@H](NC(C)=O)%12)" @@ -3643,7 +3652,7 @@ "CPD0-2223" "2-acyl-sn-glycero-3-phosphoethanolamine (n-C18:0)" [] "C23H48NO7P" 481.608 0 "CCCCCCCCCCCCCCCCCC(O[C@@H](COP(OCC[NH3+])([O-])=O)CO)=O" "CPD0-2227" "an octadecenoyl-CoA (n-C18:1CoA)" [] "C39H64N7O17P3S" 1027.953 -4 "CCCCCCCCCCCCCCC/C=C/C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(=O)(OP(=O)(OC[C@@H]1([C@@H](OP([O-])(=O)[O-])[C@@H](O)[C@@H](O1)n3(c2(c(c(N)ncn2)nc3))))[O-])[O-]" "CPD0-2228" "a tetradecenoyl-CoA (n-C14:1CoA)" [] "C35H56N7O17P3S" 971.845 -4 "CCCCCC/C=C/CCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(=O)(OP(=O)(OC[C@@H]1([C@@H](OP([O-])(=O)[O-])[C@@H](O)[C@@H](O1)n3(c2(c(c(N)ncn2)nc3))))[O-])[O-]" -"CPD0-2229" "2-oleoyl-sn-glycero-3-phosphoglycerol" ["2-acyl-sn-glycero-3-phosphoglycerol (n-C18:1)"] "C24H46O9P" 509.596 -1 "CCCCCCCC\C=C/CCCCCCCC(O[C@@H](COP(OC[C@@H](O)CO)([O-])=O)CO)=O" +"CPD0-2229" "2-18:1-lysophosphatidylglycerol" ["2-oleoyl-sn-glycero-3-phospho-(1'-sn-glycerol)", "2-(9Z-octadecenoyl)-sn-glycero-3-phospho-(1'-sn-glycerol)", "2-18:1-lysoPG", "2-oleoyl-sn-glycero-3-phosphoglycerol", "2-acyl-sn-glycero-3-phosphoglycerol (n-C18:1)"] "C24H46O9P" 509.596 -1 "CCCCCCCC\C=C/CCCCCCCC(O[C@H](CO)COP([O-])(=O)OC[C@@H](O)CO)=O" "CPD0-2230" "phosphatidylglycerolphosphate (1,2-di-palmitoleoyl)" ["phosphatidylglycerolphosphate (dihexadec-9-enoyl, n-C16:1)"] "C38H69O13P2" 795.903 -3 "CCCCCC\C=C/CCCCCCCC(OC[C@H](COP([O-])(=O)OC[C@H](COP([O-])(=O)[O-])O)OC(=O)CCCCCCC\C=C/CCCCCC)=O" "CPD0-2231" "dIDP" ["deoxyinosine diphosphate"] "C10H11N4O10P2" 409.165 -3 "C(OP(=O)([O-])OP(=O)([O-])[O-])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]cn2)))C[C@H](O)3)" "CPD0-2232" "(S)-3-hydroxyhexadecanoyl-CoA" ["3S-hydroxyhexadecanoyl-AoA", "(S)-3-hydroxypalmitoyl-CoA"] "C37H62N7O18P3S" 1017.914 -4 "CCCCCCCCCCCCC[C@@H](CC(SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(=O)(OP(=O)(OC[C@H]1(O[C@H]([C@@H]([C@@H]1OP([O-])(=O)[O-])O)n3(c2(c(c(N)ncn2)nc3))))[O-])[O-])=O)O" @@ -3824,7 +3833,7 @@ "CPD0-2580" "a purine nucleotide phosphoramidate" [] null null -1 "[C@H]1([a purine base])(O[C@H](COP([O-])(=O)N)[C@@H](O)[C@@H](O)1)" "CPD0-2581" "pseudomonate A" [] "C26H43O9" 499.62 -1 "CC(/C[C@H]2([C@H](O)[C@H](O)[C@@H](CC1(OC([C@H]([C@H](C)O)C)1))CO2))=C\C(OCCCCCCCCC([O-])=O)=O" "CPD0-2582" "(3R)-3,4-dihydroxybutanal" ["D-3,4-dihydroxybutanal"] "C4H8O3" 104.105 0 "C(C=O)[C@@H](O)CO" -"CPD0-2583" "GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala-D-Ala" [] null 990.971 0 null +"CPD0-2583" "GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-meso-DAP-D-Ala-D-Ala" ["GlcNAc-anhMurNAc-pentapeptide"] "C40H62N8O21" 990.971 -2 "C[C@H](C(=O)N[C@H](C)C(=O)[O-])NC(=O)[C@H](CCC[C@H](C(=O)[O-])[NH3+])NC(=O)CC[C@@H](NC(=O)[C@@H](NC([C@H](O[C@@H]2([C@@H](NC(=O)C)C3(OCC([C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](NC(=O)C)1))2)O3)))C)=O)C)C(=O)[O-]" "CPD0-2585" "immucillin-A 5'-triphosphate" ["ImmA-TP", "immucillin-A triphosphate"] "C10H14N6O12P3" 503.175 -3 "C(OP(=O)([O-])OP(=O)([O-])OP(=O)([O-])[O-])[C@H]3([NH2+][C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](O)3)" "CPD0-2587" "anthraquinone-2-sulfonate" [] "C14H7O5S" 287.266 -1 "c1(ccc2(c(=O)c3(cc(S(=O)(=O)[O-])ccc(c(=O)c(c1)2)3)))" "CPD0-2588" "anthraquinone-2,6-disulfonate" ["9,10-anthraquinone-2,6-disulfonate", "AQDS"] "C14H6O8S2" 366.317 -2 "c1(c(S([O-])(=O)=O)cc2(c(=O)c3(ccc(S([O-])(=O)=O)cc(c(=O)c(c1)2)3)))" @@ -3832,11 +3841,11 @@ "CPD0-2591" "naphthalen-1-yl butanoate" ["1-naphthyl butyrate", "α-naphthyl butyrate"] "C14H14O2" 214.263 0 "CCCC(=O)Oc1(cccc2(ccccc12))" "CPD0-2595" "2-hydroxypropyl-β-cyclodextrin" ["HP-β-CD"] "C63H112O42" 1541.553 0 "CC(O)COC[C@H]2(O[C@@H]3(O[C@@H]8([C@@H](COCC(O)C)O[C@H](O[C@H]1([C@@H](O)[C@H](O)[C@H](O[C@H](COCC(O)C)1)O[C@H]7([C@@H](O)[C@@H]([C@@H](O[C@@H]6([C@@H](COCC(C)O)O[C@H](O[C@@H]5([C@@H](COCC(O)C)O[C@H](O[C@@H]4([C@@H](COCC(C)O)O[C@H](O[C@H]2[C@@H](O)[C@@H]3O)[C@H]([C@H](O)4)O))[C@H]([C@H](O)5)O))[C@@H](O)[C@H](O)6))O[C@H](COCC(O)C)7)O)))[C@H]([C@H](O)8)O)))" "CPD0-2596" "N-pantoylglycyl-2-aminoethanethiol" ["Gly-Pan"] "C10H20N2O4S" 264.339 0 "CC([C@@H](O)C(=O)NCC(=O)NCCS)(C)CO" -"CPD0-2597" "faropenem" [] "C12H14NO5S" 284.306 -1 "C[C@@H](O)[C@H]1(C(=O)N3([C@@H]1SC(/[C@H]2(CCCO2))=C(C([O-])=O)/3))" +"CPD0-2597" "faropenem" ["(5R,6S)-6-[(1R)-1-hydroxyethyl]-7-oxo-3-[(2R)-tetrahydrofuran-2-yl]-4-thia-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid", "(+)-(5R,6S)-6-((1R)-1-hydroxyethyl)-7-oxo-3-((2R)-tetrahydro-2-furyl)-4-thia-1-azabicyclo(3.2.0)hept-2-ene-2-carboxylic acid", "fropenem"] "C12H14NO5S" 284.306 -1 "C[C@@H](O)[C@H]1(C(=O)N3([C@@H]1SC(/[C@H]2(CCCO2))=C(C([O-])=O)/3))" "CPD0-2598" "AM-112" [] "C14H22N2O5" 298.338 0 "C[C@@H](O)[C@@H]1(C(N2(C(/C(=O)[O-])=C(C(C)(C)CCC[NH3+])/O[C@H]12))=O)" "CPD0-2599" "mecillinam" ["FL 1060"] "C15H22N3O3S" 324.417 -1 "CC1(C)(S[C@H]3(N([C@@H](C(=O)[O-])1)C(=O)[C@@H](/N=C/N2(CCCCCC2))3))" -"CPD0-2600" "doripenem" [] "C15H24N4O6S2" 420.498 0 "C[C@H]3(C(/S[C@H]1(C[C@@H](CNS(N)(=O)=O)[NH2+]C1))=C(C(=O)[O-])\N2(C(=O)[C@@H]([C@H]23)[C@H](O)C))" -"CPD0-2601" "ceftobiprole" [] "C20H22N8O6S2" 534.564 0 "C2(N([C@@H]1(CC[NH2+]C1))C(=O)C(\C2)=C/C5(/CS[C@@H]4([C@H](NC(=O)C(/c3(nc(N)sn3))=N/[O-])C(=O)N4C(/C(=O)O)=5)))" +"CPD0-2600" "doripenem" [] "C15H24N4O6S2" 420.498 0 "C[C@H]3(C(/S[C@H]1(C[C@@H](CNS(N)(=O)=O)[NH2+]C1))=C(C(=O)[O-])\N2(C(=O)[C@@H]([C@H]23)[C@H](C)O))" +"CPD0-2601" "ceftobiprole" [] "C20H21N8O6S2" 533.556 -1 "C2(N([C@@H]1(CC[NH2+]C1))C(=O)C(\C2)=C/C5(/CS[C@@H]4([C@H](NC(=O)C(/c3(nc(N)sn3))=N/[O-])C(=O)N4C(/C(=O)[O-])=5)))" "CPD0-2602" "cefepime" [] "C19H24N6O5S2" 480.556 0 "C[N+]1(CCCC1)CC4(\CS[C@@H]3([C@H](NC(=O)C(/c2(nc(N)sc2))=N/OC)C(=O)N3C(/C(=O)[O-])=4))" "CPD0-2603" "enduracidin" [] "C106H135N26O31Cl3" 2375.747 0 "CC(C)CCCC/C=C/C=C\C(=O)NC%10(C(C9(OC(C(c1(ccc(O)cc1))NC(C(NC(C(CC2(NC([NH3+])NC2))NC(CNC(C(c3(cc(Cl)c(O)c(Cl)c3))NC(C(CO)NC(C(c4(cc(Cl)c(O)cc4))NC(C(CC5(NC(NC5)=N))NC(C(CCCNC(N)=O)NC(C(C(C)O)NC(C(c6(ccc(O)cc6))NC(C(c7(ccc(O)cc7))NC(C(C(C)O)NC(=O)C(NC(C(c8(ccc(O)cc8))NC(C9NC%10=O)=O)=O)CCCN)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)C)=O)=O))C([O-])=O)" "CPD0-2604" "macarbomycin" [] "C69H106N5O35P" 1596.583 -2 "CC(/CC/C=C/C(C)(C)CCC(CC1(C(CCCC(C)(C)1)=C))=C)=C\CO[C@@H](C(=O)[O-])COP(=O)([O-])O[C@@H]2([C@@H]([C@H]([C@@](O)(C)[C@@H](C(N)=O)O2)OC(N)=O)O[C@H]4([C@@H]([C@H]([C@@H]([C@@H](CO[C@H]3([C@@H]([C@H]([C@@H]([C@@H](CO)O3)O)O)O))O4)O[C@H]5([C@@H]([C@H]([C@@H]([C@@H](CO)O5)O[C@H]7([C@@H]([C@H]([C@H]([C@@H](C(NC6(/C(CCC(\O)=6)=O))=O)O7)O)O)O))O)NC(C)=O))O)NC(C)=O))" @@ -3845,11 +3854,11 @@ "CPD0-2607" "DCB-PV" ["N(4)-alkylated 3,4-dichlorobenzyloxybenzyl derivative of glycopeptide putrescinyl vancomycin"] "C83H95N11O24Cl4" 1772.535 2 "CC(C)C[C@H](C(NC%12(C(N[C@@H](CC(N)=O)C(NC5(C(N[C@H]3(C(NC(C(NC(C(=O)NCCCC[NH3+])c1(cc(cc(c1c2(c(ccc(c2)3)O))O)O))=O)[C@@H](c4(ccc(c(c4)Cl)Oc6(cc5cc(c6O[C@H]7([C@@H]([C@H]([C@@H]([C@@H](CO)O7)O)O)O[C@H]%10(C[C@@](Nc9(ccc(OCc8(cc(Cl)c(Cl)cc8))cc9))(C)[C@@H]([C@H](C)O%10)O)))Oc%11(c(Cl)cc(cc%11)[C@H]%12O))))O)=O))=O))=O)=O))=O)[NH2+]C" "CPD0-2608" "amoxicillin" [] "C16H19N3O5S" 365.403 0 "CC2(C)(S[C@@H]3([C@H](NC([C@H]([NH3+])c1(ccc(O)cc1))=O)C(=O)N([C@@H](C(=O)[O-])2)3))" "CPD0-2609" "cephapirin" [] "C17H16N3O6S2" 422.45 -1 "CC(=O)OCC2(\CS[C@@H]3([C@H](NC(CSc1(ccncc1))=O)C(=O)N(C(/C(=O)[O-])=2)3))" -"CPD0-2610" "cefaclor" [] "C15H14N3O4SCl" 367.806 0 "C2(S[C@@H]3([C@H](NC([C@H]([NH3+])c1(ccccc1))=O)C(=O)N(C(\C([O-])=O)=C2/Cl)3))" -"CPD0-2611" "meropenem" [] "C17H25N3O5S" 383.462 0 "C[C@H]3(C(/S[C@@H]1(C[NH2+][C@H](C(=O)N(C)C)C1))=C(C([O-])=O)\N2(C(=O)[C@@H]([C@@H]23)([C@H](O)C)))" +"CPD0-2610" "cefaclor" ["3-chloro-7-D-(2-phenylglycinamido)-3-cephem-4-carboxylic acid", "cefaclor anhydrous", "cefaclorum", "cephaclor"] "C15H14N3O4SCl" 367.806 0 "C2(S[C@@H]3([C@H](NC([C@H]([NH3+])c1(ccccc1))=O)C(=O)N(C(\C([O-])=O)=C2/Cl)3))" +"CPD0-2611" "meropenem" [] "C17H25N3O5S" 383.462 0 "C[C@H]3(C(/S[C@@H]1(C[NH2+][C@H](C(=O)N(C)C)C1))=C(C([O-])=O)\N2(C(=O)[C@@H]([C@@H]23)([C@H](C)O)))" "CPD0-2612" "cefoselis sulfate" ["FK037"] null null -2 "CO\N=C(c1(nc(N)sc1))/C(=O)N[C@@H]3(C(=O)N4(C(/C(=O)[O-])=C(CN2(\C=C/C(N(CCO)2)=[NH2+]))/CS[C@H]34)).O=S([O-])([O-])=O" "CPD0-2613" "DQ-2556" [] "C22H19N7O6S2" 541.555 0 "CO\N=C(c1(csc(N)n1))/C(N[C@@H]4(C(N5(C(/C(=O)[O-])=C(C[n+]3(ccc(c2(cnco2))cc3))/CS[C@H]45))=O))=O" -"CPD0-2614" "cefazolin" [] "C14H14N8O4S3" 454.496 0 "Cc1(sc(nn1)SCC3(CS[C@@H]4([C@H](NC(Cn2(nnnc2))=O)C(=O)N(C(C(O)=O)=3)4)))" +"CPD0-2614" "cefazolin" [] "C14H13N8O4S3" 453.488 -1 "Cc1(sc(nn1)SCC3(CS[C@@H]4([C@H](NC(Cn2(nnnc2))=O)C(=O)N(C(C([O-])=O)=3)4)))" "CPD0-2615" "cephalosporin derivative compound 6" [] "C40H57N10O17S" 982.007 -3 "C[C@@H](NC(=O)C)C(=O)N[C@H](C([O-])=O)CCC(=O)NC(CCCC[NH3+])C(=O)N[C@@H]1(C(=O)N2(C(/C(=O)[O-])=C(CC[C@H](NC(CC[C@H](NC(=O)C)C([O-])=O)=O)C(N[C@H](C(N[C@H](C([O-])=O)C)=O)C)=O)/CS[C@H]12))" "CPD0-2617" "dTDP-6-deoxy-α-D-glucose" ["dTDP-α-D-quinovose"] "C16H24N2O15P2" 546.317 -2 "Cc1(cn(c(=O)[nH]c(=O)1)[C@H]3(C[C@H](O)[C@@H](COP(=O)([O-])OP(=O)([O-])O[C@H]2(O[C@H](C)[C@@H](O)[C@H](O)[C@@H](O)2))O3))" "CPD0-2621" "citric acid monohydrate" [] "H3(H2O)(C6H5O7)" 210.14 0 null @@ -3880,7 +3889,7 @@ "CPD0-2660" "α-L-Fuc-(1->3)-α-D-Glc-PP-Und" ["α-L-fucosyl-(1->3)-α-D-glucopyranosyl-diphosphoundecaprenol"] "C67H110O16P2" 1233.544 -2 "C\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC/C=C(C)/CC/C=C(C)/CC/C=C(C)/COP(=O)([O-])OP(=O)([O-])O[C@H]2(O[C@H](CO)[C@@H](O)[C@H](O[C@H]1([C@H]([C@@H]([C@@H]([C@@H](O1)C)O)O)O))[C@@H](O)2)" "CPD0-2661" "2/3-O-Ac-α-L-Fuc-(1→3)-α-D-Glc-PP-Und" ["2/3-O-acetyl-α-L-fucosyl-(1→3)-α-D-glucopyranosyl-diphosphoundecaprenol"] "C69H112O17P2" 1275.581 -2 "C\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC/C=C(C)/CC/C=C(C)/CC/C=C(C)/COP(=O)([O-])OP(=O)([O-])O[C@H]2(O[C@H](CO)[C@@H](O)[C@H](O[C@H]1([C@H]([C@@H]([C@@H]([C@@H](O1)C)O)O)OC(=O)C))[C@@H](O)2)" "CPD0-2662" "2-O-acetyl-L-fucosyl-(1->3)-β-D-glucopyranosyl-diphosphoundecaprenol" [] "C69H112O17P2" 1275.581 -2 "C\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC/C=C(C)/CC/C=C(C)/CC/C=C(C)/COP(=O)([O-])OP(=O)([O-])O[C@H]2(O[C@H](CO)[C@@H](O)[C@H](O[C@H]1([C@H]([C@@H]([C@@H]([C@@H](O1)C)O)O)OC(=O)C))[C@@H](O)2)" -"CPD0-2663" "3-O-acetyl-L-fucosyl-(1->3)-β-D-glucopyranosyl-diphosphoundecaprenol" [] "C69H112O17P2" 1275.581 -2 "C\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC/C=C(C)/CC/C=C(C)/CC/C=C(C)/COP(=O)([O-])OP(=O)([O-])O[C@H]2(O[C@H](CO)[C@@H](O)[C@H](O[C@H]1([C@H]([C@@H]([C@@H]([C@@H](O1)C)O)OC(=O)C)O))[C@@H](O)2)" +"CPD0-2663" "3-O-acetyl-L-fucosyl-(1->3)-α-D-glucopyranosyl-diphosphoundecaprenol" [] "C69H112O17P2" 1275.581 -2 "C\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC/C=C(C)/CC/C=C(C)/CC/C=C(C)/COP(=O)([O-])OP(=O)([O-])O[C@H]2(O[C@H](CO)[C@@H](O)[C@H](O[C@H]1([C@H]([C@@H]([C@@H]([C@@H](O1)C)O)OC(=O)C)O))[C@@H](O)2)" "CPD0-2664" "α-L-Fuc-(1→4)-2/3-O-Ac-α-L-Fuc-(1→3)-α-D-Glc-PP-Und" ["α-L-fucosyl-(1→4)-2/3-O-acetyl-α-L-fucosyl-(1→3)-α-D-glucopyranosyl-diphosphoundecaprenol"] "C75H122O21P2" 1421.724 -2 "C\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC/C=C(C)/CC/C=C(C)/CC/C=C(C)/COP(=O)([O-])OP(=O)([O-])O[C@H]3(O[C@H](CO)[C@@H](O)[C@H](O[C@H]1([C@H]([C@@H]([C@@H]([C@@H](O1)C)O[C@H]2([C@H]([C@@H]([C@@H]([C@@H](O2)C)O)O)O))O)OC(=O)C))[C@@H](O)3)" "CPD0-2665" "α-D-Gal-(1→3)-α-L-Fuc-(1→4)-2/3-O-Ac-α-L-Fuc-(1->3)-α-D-Glc-PP-Und" ["α-D-galactosyl-(1→3)-α-L-fucosyl-(1→4)-2/3-O-acetyl-α-L-fucosyl-(1->3)-α-D-glucopyranosyl-diphosphoundecaprenol"] "C81H132O26P2" 1583.866 -2 "C\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC/C=C(C)/CC/C=C(C)/CC/C=C(C)/COP(=O)([O-])OP(=O)([O-])O[C@H]4(O[C@H](CO)[C@@H](O)[C@H](O[C@H]1([C@H]([C@@H]([C@@H]([C@@H](O1)C)O[C@H]2([C@H]([C@@H]([C@@H]([C@@H](O2)C)O)O[C@H]3(O[C@H](CO)[C@H](O)[C@H](O)[C@@H](O)3))O))O)OC(=O)C))[C@@H](O)4)" "CPD0-2666" "2-O-Ac-α-D-Gal-(1→3)-α-L-Fuc-(1→4)-2/3-O-Ac-α-L-Fuc-(1→3)-α-D-Glc-PP-Und" ["2-O-acetyl-α-D-galactosyl-(1→3)-α-L-fucosyl-(1→4)-2/3-O-acetyl-α-L-fucosyl-(1→3)-α-D-glucopyranosyl-diphosphoundecaprenol"] "C83H134O27P2" 1625.903 -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(=O)([O-])OP(O[C@H]4(O[C@H](CO)[C@@H](O)[C@H](O[C@@H]3(O[C@@H](C)[C@@H](O[C@@H]1(O[C@H]([C@H]([C@H]([C@@H]1O)O[C@H]2(O[C@H](CO)[C@H](O)[C@H](O)[C@@H](OC(=O)C)2))O)C))[C@@H](OC(=O)C)[C@H](O)3))[C@@H](O)4))([O-])=O" @@ -3907,7 +3916,7 @@ "CPD0-2697" "N-methyl-N-picrylnitramine" ["tetryl"] null null 0 null "CPD0-2698" "2,3-dichloro-1,4-naphthoquinone" ["dichlone"] null null 0 null "CPD0-2699" "2-hydroxy-3-methyl-1,4-naphthoquinone" [] null null 0 null -"CPD0-2700" "N6-(1-carboxyethyl)-L-lysine" ["CEL", "Nε-(carboxyethyl)lysine"] null null 0 null +"CPD0-2700" "N6-(1-carboxyethyl)-L-lysine" ["CEL", "Nε-(carboxyethyl)lysine"] "C9H18N2O4" 218.25201 0 "CC(C(O)=O)NCCCC[C@H](N)C(O)=O" "CPD0-2701" "aceneuramate" ["N-acetyl-keto-neuraminic acid", "N-acetyl-keto-neuraminate", "aldehydo-N-acetylneuraminate", "(4S,5R,6R,7S,8R)-5-acetamido-4,6,7,8,9-pentahydroxy-2-oxononanoate"] "C11H18NO9" 308.264 -1 "CC(=O)N[C@H]([C@@H](O)CC(=O)C([O-])=O)[C@@H](O)[C@H](O)[C@H](O)CO" "CPD0-2702" "aldehydo-2-keto-3-deoxynonanoate" ["KDN"] null null 0 null "CPD0-2703" "2-keto-3-deoxyxylonate" [] null null 0 null @@ -4477,7 +4486,7 @@ "Eicosatrienoates" "an icosatrienoate" ["an eicosatrienoic acid", "an eicosatrienoate", "an icosatrienoic acid"] null null 0 null "EIF5A-HYPUSINE" "an [eIF5A]-hypusine" ["an [eIF5A]-N6-[(R)-4-amino-2-hydroxybutyl]-L-lysine"] null null 1 "C([NH3+])C[C@@H](O)CNCCCC[C@H](N[an eIF5A protein])C([an eIF5A protein])=O" "EIF5A-LYSINE" "an [eIF5A-precursor]-lysine" ["an eIF5A-L-lysine", "an eIF5A lysine"] null null 1 "C([NH3+])CCC[C@@H](C(=O)[an eIF5A protein])N[an eIF5A protein]" -"Elemental-selenium" "Se0" ["elemental selenium"] "Se" 78.96 0 "[Se]" +"Elemental-selenium" "elemental selenium" ["Se0"] "Se" 78.96 0 "[Se]" "Elemental-Sulfur" "sulfur(0)" ["elemental sulfur", "orthorhombic sulfur", "rhombic sulfur", "S0"] "S" 32.06 0 "[S]" "Elongation-Factor-EF-P-L-lysine" "a [elongation-Factor-P]-L-lysine" [] null null 1 "C([NH3+])CCC[C@@H](C([an elongation factor P])=O)N[an elongation factor P]" "Elongator-tRNAMet-acetylcytidine" "an N4-acetylcytidine34 in [elongator tRNAmet]" ["[elongator tRNAmet]-N4-acetylcytidine34"] null null -2 "CC(=O)Nc1(nc(=O)n(cc1)[C@@H]2(O[C@H](COP(=O)([O-])O[elongator tRNAMet])[C@@H](OP(=O)(O[elongator tRNAMet])[O-])[C@@H](O)2))" @@ -4553,7 +4562,7 @@ "Fe2-siderophores" "a siderophore-bound Fe(II)" [] null null 1 "[Fe+][a siderophore]" "Fe3-siderophores" "a siderophore-bound Fe(III)" ["an iron(III) chelate", "an Fe3+-siderophore", "a ferric-siderophore complex"] null null 2 "[Fe+2][a siderophore]" "Feraxan" "feraxan" [] null null 0 "COc9(cc(/C=C/C(OC[C@@H]8(O[C@@H](O[C@@H]7([C@@H](O)[C@H](O[R2])OC[C@@H](O[C@@H]6(OC[C@@H](O[C@@H]5(OC[C@@H](O[C@@H]1(OC[C@@H](O[R1])[C@H](O)[C@@H](O)1))[C@H](O[C@H]3([C@H](O)[C@@H](O)[C@H](COC(=O)/C=C/c2(cc(OC)c(O)cc2))O3))[C@@H](O[C@H]4([C@H](O)[C@@H](O)[C@H](CO)O4))5))[C@H](O)[C@@H](O)6))7))[C@H](O)[C@@H](O)8))=O)ccc(O)9)" -"FERRIC-CITRATE-COMPLEX" "iron(III) dicitrate" ["Fe(III)dicitrate", "ferric dicitrate complex", "iron dicitrate", "ferric dicitrate", "Fe(Cit)2"] "C12H16O14Fe" 440.097 -6 "C1(C(O[Fe]234(OC(C(O)1CC(O2)[O-])[O-])(OC(C(O)(CC(O3)[O-])CC(O4)[O-])[O-]))[O-])" +"FERRIC-CITRATE-COMPLEX" "iron(III) dicitrate" ["Fe(III)dicitrate", "ferric dicitrate complex", "iron dicitrate", "ferric dicitrate", "Fe(Cit)2"] "C12H10O14Fe" 434.05002 -3 "C(=O)([O-])CC(C(=O)[O-])(O)CC(=O)[O-].C(=O)([O-])CC(C(=O)[O-])(O)CC(=O)[O-].[Fe+3]" "FERRIC-ENTEROBACTIN-COMPLEX" "iron(III)-enterobactin complex" ["ferric enterobactin", "ferric enterochelin", "ferrienterochelin", "ferrienterobactin", "ferric-enterobactin complex", "Fe3+-enterobactin complex"] "C30H21N3O15Fe" 719.354 -3 "C5(OC([C@H]4(NC(c8(c9(O[Fe-3]237(Oc6(c(c(C(N[C@H](C(=O)OC[C@H](NC(=O)c1(c(c(ccc1)O2)O3))C(=O)OC4)5)=O)ccc6)O7))Oc(ccc8)9)))=O))=O)" "Ferric-Hydroxamate-Complexes" "a ferric hydroxamate complex" ["an iron (III) hydroxamate complex", "an iron (III) hydroxamate"] null null 0 null "FERULIC-ACID" "ferulate" ["ferulic acid", "4-hydroxy-3-methoxycinnamic acid", "caffeic acid 3-methyl ether", "4-hydroxy-3-methoxycinnamate"] "C10H9O4" 193.179 -1 "COc1(cc(/C=C/C([O-])=O)ccc(O)1)" @@ -4595,6 +4604,7 @@ "Fluoroaromatic-Compounds" "a fluoroaromatic compound" [] null null 0 null "Fluoroquinolones" "a fluoroquinolone" [] null null 0 null "FMN" "FMN" ["flavin mononucleotide", "riboflavin 5'-phosphate", "riboflavin 5'-monophosphate"] "C17H18N4O9P" 453.324 -3 "Cc2(cc1(nc3(c(=O)[n-]c(=O)nc(n(C[C@H](O)[C@H](O)[C@H](O)COP([O-])(=O)[O-])c1cc(C)2)3)))" +"FMNH" "FMNH" ["flavin mononucleotide semiquinone"] "C17H20N4O9P" 455.34 -2 "Cc2(cc1(Nc3(c(=O)[nH]c(=O)[nH]c(N(C[C@H](O)[C@H](O)[C@H](O)COP([O-])(=O)[O-])c1cc(C)2)3)))" "FMNH2" "FMNH2" ["reduced FMN", "reduced flavin mononucleotide"] "C17H21N4O9P" 456.348 -2 "Cc2(cc1(Nc3(c(=O)[nH]c(=O)[nH]c(N(C[C@H](O)[C@H](O)[C@H](O)COP([O-])(=O)[O-])c1cc(C)2)3)))" "FMPP" "FMPP" ["2-amino-5-(fluoromethyl)pyrrolo[2,3-d]pyrimidin-4 (3H)-one"] "C7H7N4OF" 182.157 0 "C(F)c1(c[nH]c2(c1c(=O)[nH]c(N)n2))" "Folates" "a folate" ["a folic acid"] null null -1 "C([R])(=O)CC[C@@H](C(=O)[O-])NC(=O)c1(ccc(cc1)NCc2(cnc3(nc(N)[nH]c(=O)c(n2)3)))" @@ -4620,8 +4630,7 @@ "FRUCTOSE-6P" "β-D-fructofuranose 6-phosphate" ["D-fructose-6-phosphate", "fructose-6P", "fructose-6-P", "fruc6p", "fru-6-P", "fructose-6-phosphate", "A-D-fructose-6-P", "D-fructose-6-P", "D-fructose 6-phosphate", "D-fructofuranose 6-phosphate"] "C6H11O9P" 258.121 -2 "C(OP(=O)([O-])[O-])[C@H]1(O[C@@](CO)(O)[C@@H](O)[C@H](O)1)" "Fructose-BisPO4-Aldolase-Lysine" "[fructose-bisphosphate aldolase]-lysine" [] null null 1 "C([NH3+])CCC[C@H](N[a fructose-bisphosphate aldolase])C([a fructose-bisphosphate aldolase])=O" "Fructose-BisPO4-Aldolase-Tri-Me-Lysine" "a [fructose-bisphosphate aldolase]-N6,N6,N6-trimethyl-L-lysine" [] null null 1 "C[N+](C)(C)CCCC[C@H](N[a fructose-bisphosphate aldolase])C([a fructose-bisphosphate aldolase])=O" -"FRUCTOSEGLYCINE" "N-(1-deoxy-D-fructos-1-yl)glycine" ["deoxyfructosylglycine", "fructoseglycine"] "C8H15NO7" 237.209 0 "C([NH2+]CC(=O)[O-])C(=O)[C@@H](O)[C@H](O)[C@H](O)CO" -"FRUCTOSELYSINE" "N6-(1-deoxy-D-fructos-1-yl)-L-lysine" ["fructoselysine (ambiguous)", "Nε-(D-fructosyl)-L-lysine"] "C12H25N2O7" 309.339 1 "C(C(=O)[C@@H](O)[C@H](O)[C@@H](CO)O)[NH2+]CCCC[C@H]([NH3+])C(=O)[O-]" +"FRUCTOSELYSINE" "N6-(1-deoxy-D-fructos-1-yl)-L-lysine" ["fructoselysine (ambiguous)", "Nε-(D-fructosyl)-L-lysine"] "C12H25N2O7" 309.339 1 "C([C@@]1(O)(OC[C@@H](O)[C@@H](O)[C@H](O)1))[NH2+]CCCC[C@H]([NH3+])C(=O)[O-]" "FRUCTOSELYSINE-6-PHOSPHATE" "N6-(1-deoxy-6-O-phospho-D-fructos-1-yl)-L-lysine" ["fructoselysine-6-P", "fructoselysine 6-phosphate"] "C12H24N2O10P" 387.303 -1 "C(C(=O)[C@@H](O)[C@H](O)[C@@H](COP([O-])(=O)[O-])O)[NH2+]CCCC[C@H]([NH3+])C(=O)[O-]" "FRUCTURONATE" "D-fructuronate" [] "C6H9O7" 193.133 -1 "C(=O)([O-])[C@@H](O)[C@@H](O)[C@H](O)C(=O)CO" "Fucan" "a fucan" [] null null 0 null @@ -4643,7 +4652,7 @@ "GALACTITOL" "galactitol" ["dulcitol", "dulcite", "dulcose", "(2R,3S,4R,5S)-hexane-1,2,3,4,5,6-hexol"] "C6H14O6" 182.173 0 "C([C@@H]([C@H]([C@H]([C@H](O)CO)O)O)O)O" "GALACTITOL-1-PHOSPHATE" "galactitol 1-phosphate" [] "C6H13O9P" 260.137 -2 "C(OP(=O)([O-])[O-])[C@H](O)[C@@H](O)[C@@H](O)[C@H](O)CO" "Galacto-Glucuronoxylans" "a 2-O-α-D-galactopyranosyl-4-O-methyl-α-D-glucurono)-D-xylan" [] null null 0 "CO[C@H]1([C@@H]([C@H]([C@H](O[C@H](C(O)=O)1)O[C@H]9([C@H](O[R2])OC[C@@H](O[C@H]8([C@@H]([C@@H](O)[C@H](O[C@H]7([C@@H]([C@@H](O)[C@H](O[C@H]2([C@@H]([C@H]([C@@H](CO2)O[C@H]3([C@@H]([C@H]([C@@H](CO3)O[C@H]4([C@@H]([C@H]([C@H](O[R1])CO4)O)O))O)O[C@@H]5([C@@H]([C@H]([C@@H]([C@@H](C(O)=O)O5)OC)O)O[C@@H]6([C@@H]([C@H]([C@H]([C@@H](CO)O6)O)O)O))))O)O))CO7)O))CO8)O))[C@@H]9O))O[C@@H]%10([C@@H]([C@H]([C@H]([C@@H](CO)O%10)O)O)O))O)" -"Galactofuran" "a galactofuran" ["a β-D-Galf-(1->6)-β-D-Galf-(1->5)-β-D-Galf-Rha-GlcNAc-P-P-C50"] null null -2 "CC(C)=CCCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(OP(O[C@@H]1([C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O[C@@H]6(O[C@@H](C)[C@H](O[C@@H]5(O[C@@H]([C@@H](CO)O[C@@H]4(O[C@@H]([C@@H](CO)O[C@@H]3(O[C@@H]([C@@H](CO)O[C@@H]2(O[C@@H]([C@@H](CO)O[R])[C@H](O)[C@@H](O)2))[C@H](O)[C@@H](O)3))[C@H](O)[C@@H](O)4))[C@H](O)[C@@H](O)5))[C@@H](O)[C@@H](O)6))NC(=O)C))(=O)[O-])(=O)[O-]" +"Galactofuran" "a galactofuran" ["a β-D-Galf-(1->6)-β-D-Galf-(1->5)-β-D-Galf-Rha-GlcNAc-P-P-C50", "lipid-linked galactan polymer", "LLG"] null null -2 "CC(C)=CCCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(OP(O[C@@H]1([C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O[C@@H]6(O[C@@H](C)[C@H](O[C@@H]5(O[C@@H]([C@@H](CO)O[C@@H]4(O[C@@H]([C@@H](CO)O[C@@H]3(O[C@@H]([C@@H](CO)O[C@@H]2(O[C@@H]([C@@H](CO)O[R])[C@H](O)[C@@H](O)2))[C@H](O)[C@@H](O)3))[C@H](O)[C@@H](O)4))[C@H](O)[C@@H](O)5))[C@@H](O)[C@@H](O)6))NC(=O)C))(=O)[O-])(=O)[O-]" "Galactofuranosemannans" "a galactomannan (Aspergillus)" [] null null 0 "C(O)[C@@H](O)[C@H]%13([C@H](O)[C@@H](O)[C@H](O[C@H](CO)[C@H]%12([C@H](O)[C@@H](O)[C@H](O[C@H](CO)[C@H]%11([C@H](O)[C@@H](O)[C@H](O[C@H](CO)[C@H]%10([C@H](O)[C@@H](O)[C@H](O[C@H](CO)[C@H]9([C@H](O)[C@@H](O)[C@H](O[C@H]8([C@@H](O)[C@@H]([C@@H](CO[C@@H]4(O[C@H](CO)[C@@H](O[C@@H]3(O[C@H](CO)[C@H]([C@H](O)[C@H](O[C@@H]2(O[C@H](CO)[C@H]([C@H](O)[C@H](O[C@@H]1(O[C@H](CO[R1])[C@H]([C@H](O)[C@H](O)1)O))2)O))3)O))[C@H](O)[C@H](O)4))O[C@@H](O[C@H]7([C@@H](O)[C@@H]([C@@H](CO)O[C@@H](O[C@H]6([C@@H](O)[C@@H]([C@@H](CO)O[C@@H](O[C@H]5([C@H](O)[C@H](O)[C@H](O[R2])O[C@H](CO)5))6)O))7)O))8)O))O9))O%10))O%11))O%12))O%13)" "Galactogen" "a galactogen" ["1,6-β-D-galactosyl-galactogen"] null null 0 null "Galactoglucomannans" "a galactoglucomannan" ["GGM"] null null 0 "C(O)[C@@H]5([C@H](O)[C@H](O)[C@@H](O)[C@@H](OC[C@@H]4([C@@H](O[C@@H]2(O[C@H](CO)[C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O[R1])[C@H](O)[C@@H](O)1))[C@H](O)[C@@H](O)2))[C@H](O)[C@H](O)[C@H](O[C@H]3([C@H](O)[C@H](O)[C@H](O[R2])O[C@H](CO)3))O4))O5)" @@ -4720,7 +4729,7 @@ "GlcA-n-6-O-sulfoGlcNS" "heparan sulfate containing a glucuronate--N,6-O-disulfo-D-glucosamine disaccharide" [] null null -2 "C(OS(=O)(=O)[O-])[C@@H]1([C@H]([C@@H]([C@@H](NS(=O)(=O)[O-])[C@H](O1)O[R2])O)O[C@H]2([C@H](O)[C@H]([C@@H]([C@@H](C(O)=O)O2)O[R1])O))" "GlcCer-40-1-3s" "a glucosylceramide(40:1)-3" ["a GlcCer(40:1)-3", "a glucosyl ceramide(40:1)-3"] null null 0 "C(O)[C@@H]1([C@@H](O)[C@H](O)[C@@H](O)[C@@H](O1)OC[C@H](NC(=O)[R2])[C@H](O)[R1])" "GlcMan9GlcNAc2-proteins" "GlcMan9(GlcNAc)2-[protein]" ["an N-linked GlcMan9(GlcNAc)2-glycoprotein", "an α-D-Glc-(1→3)-α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-β-D-GlcNAc-1-L-asparaginyl-[protein]", "a [glucosyl(mannosyl)9(N-acetylglucosaminyl)2]-L-asparaginyl-[protein]"] null null 0 "CC(N[C@H]%12([C@H](NC(=O)C[C@H](N[a protein])C([a protein])=O)O[C@H](CO)[C@@H](O[C@H]%11([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO[C@H]3(O[C@@H]([C@H]([C@@H]([C@@H]3O[C@@H]4([C@H]([C@@H](O)[C@H](O)[C@@H](CO)O4)O))O)O)CO))O[C@@H]6([C@@H](O[C@@H]5([C@H]([C@@H](O)[C@H](O)[C@@H](CO)O5)O))[C@H]([C@H](O)[C@@H](CO)O6)O)))O[C@@H]%10([C@@H](O[C@@H]9([C@@H](O[C@@H]7([C@@H](O)[C@H]([C@H](O)[C@@H](CO)O7)O[C@@H]8([C@H](O)[C@H]([C@H](O)[C@@H](CO)O8)O)))[C@H]([C@H](O)[C@H](O9)CO)O))[C@@H](O)[C@@H]([C@H](O%10)CO)O)))[C@@H](CO)O%11)O))[C@H](O)%12))=O" -"GlcNAc-1-6-anhydro-MurNAc-pentapeptide" "a β-D-GlcNAc-(1→4)-N-acetyl-1,6-anhydromuramoyl-pentapeptide" ["a GlcNAc-1,6-anhydro-MurNAc-pentapeptide"] null null -1 "C[C@H](C(=O)N[C@H](C)C(=O)[O-])NC(=O)[C@H](CCCC([R])[NH3+])NC(=O)CC[C@@H](NC(=O)[C@@H](NC([C@H](O[C@@H]2([C@@H](NC(=O)C)C3(OCC([C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](NC(=O)C)1))2)O3)))C)=O)C)C(=O)[O-]" +"GlcNAc-1-6-anhydro-MurNAc-pentapeptide" "a GlcNAc-1,6-anhydro-MurNAc-pentapeptide" ["β-D-GlcNAc-(1→4)-N-acetyl-1,6-anhydromuramoyl-pentapeptide"] null null -1 "C[C@H](C(=O)N[C@H](C)C(=O)[O-])NC(=O)[C@H](CCCC([R])[NH3+])NC(=O)CC[C@@H](NC(=O)[C@@H](NC([C@H](O[C@@H]2([C@@H](NC(=O)C)C3(OCC([C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](NC(=O)C)1))2)O3)))C)=O)C)C(=O)[O-]" "GlcNAc-b2-GlcNAc-b6-O-D-mannosyl-Protein" "a 3-O-{β-D-GlcNAc-(1→2)-[β-D-GlcNAc-(1→6)-]-α-D-mannosyl}-(Ser/Thr)-[protein]" ["core M2"] null null 0 "CC(=O)N[C@H]3([C@H](OC[C@H]2(O[C@H](OC([R])[C@@H](C(=O)[a protein])N[a protein])[C@@H](O[C@H]1([C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)NC(C)=O))[C@@H](O)[C@H](O)2))O[C@@H]([C@H]([C@@H]3O)O)CO)" "GlcNAc-b2-O-D-mannosyl-Protein" "a 3-O-[β-D-GlcNAc-(1→2)-α-D-mannosyl]-(Ser/Thr)-[protein]" ["core M1"] null null 0 "CC(=O)N[C@H]2([C@H](O[C@H]1([C@@H](O)[C@H](O)[C@@H](CO)O[C@H](OC([R])[C@@H](C(=O)[a protein])N[a protein])1))O[C@@H]([C@H]([C@@H]2O)O)CO)" "GlcNAc-GlcA-Gal-Gal-Xyl-Protein" "a 3-O-[α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl]-[core protein]" ["α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[proteoglycan]", "α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosylproteoglycan", "α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucuronosyl-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[core protein]", "a 3-O-[α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl]-L-seryl-[protein]"] null null -1 "CC(=O)N[C@@H]1([C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1O[C@H]2([C@H](O)[C@@H](O)[C@@H](O[C@H](C(=O)[O-])2)O[C@@H]5([C@@H](O)[C@H](O[C@@H]4([C@@H](O)[C@H](O[C@H]3([C@H](O)[C@@H](O)[C@H](OC[C@H](N[a protein])C(=O)[a protein])OC3))O[C@H](CO)[C@H](O)4))O[C@H](CO)[C@H](O)5)))" @@ -5045,7 +5054,7 @@ "Hydroxymethylbilane-Synthase-ES2" "a [hydroxymethylbilane synthase] ES2 intermediate" [] null null -8 "C(=O)([a hydroxymethylbilane synthase])[C@@H](N[a hydroxymethylbilane synthase])CSCc4([nH]c(Cc3(c(CC([O-])=O)c(CCC(=O)[O-])c(Cc2(c(CC([O-])=O)c(CCC(=O)[O-])c(Cc1(c(CC([O-])=O)c(CCC(=O)[O-])c[nH]1))[nH]2))[nH]3))c(CCC(=O)[O-])c(CC([O-])=O)4)" "Hydroxymethylbilane-Synthase-ES3" "a [hydroxymethylbilane synthase] ES3 intermediate" [] null null -10 "C(=O)([a hydroxymethylbilane synthase])[C@@H](N[a hydroxymethylbilane synthase])CSCc5([nH]c(Cc4(c(CC([O-])=O)c(CCC(=O)[O-])c(Cc3(c(CC([O-])=O)c(CCC(=O)[O-])c(Cc2(c(CC([O-])=O)c(CCC(=O)[O-])c(Cc1(c(CC([O-])=O)c(CCC(=O)[O-])c[nH]1))[nH]2))[nH]3))[nH]4))c(CCC(=O)[O-])c(CC([O-])=O)5)" "Hydroxymethylbilane-Synthase-ES4" "a [hydroxymethylbilane synthase] ES4 intermediate" [] null null -12 "C(=O)([a hydroxymethylbilane synthase])[C@@H](N[a hydroxymethylbilane synthase])CSCc6([nH]c(Cc5(c(CC([O-])=O)c(CCC(=O)[O-])c(Cc4(c(CC([O-])=O)c(CCC(=O)[O-])c(Cc3(c(CC([O-])=O)c(CCC(=O)[O-])c(Cc2(c(CC([O-])=O)c(CCC(=O)[O-])c(Cc1(c(CC([O-])=O)c(CCC(=O)[O-])c[nH]1))[nH]2))[nH]3))[nH]4))[nH]5))c(CCC(=O)[O-])c(CC([O-])=O)6)" -"HYDROXYMETHYLCEPH-3-EM-4-CARBOXYLATE" "a 3-hydroxymethyl ceph-3-em-4-carboxylate" [] null null 0 "C2(SC1(N(C(=O)[C@@]([R])(NC(=O)[R])1)C(/C(=O)O)=C(CO)/2))" +"HYDROXYMETHYLCEPH-3-EM-4-CARBOXYLATE" "a 3-hydroxymethyl ceph-3-em-4-carboxylate" [] null null -1 "C2(S[C@H]1(N(C(=O)[C@](NC([R1])=O)([R2])1)C(/C(=O)[O-])=C(CO)/2))" "HYDROXYNAPHTHOQUINONE" "juglone" ["5-hydroxy-1,4-naphthoquinone"] "C10H6O3" 174.156 0 "c2(cc(c1(c(=O)ccc(c1c2)=O))O)" "Hydroxyphthioceranic-Acids" "a hydroxyphthioceranate" ["a hydroxyphthioceranic acid"] null null -1 "C(C[C@@H]([R3])[C@H]([R2])[C@@H]([R1])[C@H](C)C[C@H](C)C[C@H](C)C[C@H](C)C[C@H](C)C[C@H](C)C[C@H](C)C([O-])=O)[R4]" "Hydroxyphthioceranyl-CoA" "a hydroxyphthioceranyl-CoA" [] null null -4 "C(C[C@@H]([R3])[C@H]([R2])[C@@H]([R1])[C@H](C)C[C@H](C)C[C@H](C)C[C@H](C)C[C@H](C)C[C@H](C)C[C@H](C)C(SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(=O)(OP(=O)(OC[C@@H]1([C@@H](OP([O-])(=O)[O-])[C@@H](O)[C@@H](O1)n3(c2(c(c(N)ncn2)nc3))))[O-])[O-])=O)[R4]" @@ -5245,7 +5254,7 @@ "L-Cysteine-Desulfurase-S-sulfinato-Cys" "an [L-cysteine desulfurase]-S-sulfinato-L-cysteine" [] null null -1 "C(=O)([an [L-cysteine desulfurase]])[C@@H](N[an [L-cysteine desulfurase]])CSS(=O)[O-]" "L-CYSTINE" "L-cystine" [] "C6H12N2O4S2" 240.292 0 "C([C@@H](C(=O)[O-])[NH3+])SSC[C@@H](C([O-])=O)[NH3+]" "L-DEHYDRO-ASCORBATE" "dehydroascorbate" ["L-dehydro-ascorbate", "dehydroascorbide", "dehydroascorbic acid"] "C6H5O6" 173.102 -1 "C(O)C(O)[C-]1(C(=O)C(=O)C(=O)O1)" -"L-DELTA1-PYRROLINE_5-CARBOXYLATE" "(S)-1-pyrroline-5-carboxylate" ["pyrroline 5-carboxylate", "L-Δ1-pyrroline-5-carboxylate", "1-pyrroline-5-carboxylate", "L-1-pyrroline-5-carboxylate", "δ-1-pyrroline-5-carboxylic acid", "δ-1-pyrroline-5-carboxylate"] "C5H6NO2" 112.108 -1 "C1(\CC[C@H](\N=1)C(=O)[O-])" +"L-DELTA1-PYRROLINE_5-CARBOXYLATE" "(S)-1-pyrroline-5-carboxylate" ["pyrroline 5-carboxylate", "L-Δ1-pyrroline-5-carboxylate", "1-pyrroline-5-carboxylate", "L-1-pyrroline-5-carboxylate", "δ-1-pyrroline-5-carboxylic acid", "δ-1-pyrroline-5-carboxylate"] "C5H6NO2" 112.108 -1 "C1(\CC[C@@H](C(=O)[O-])\N=1)" "L-DI-GMP" "5'-phosphoguanylyl(3'→5')guanosine" ["l-di-GMP", "5'pGpG", "linear dimeric GMP"] "C20H23N10O15P2" 705.407 -3 "C([C@@H]3([C@@H](O)[C@@H](O)[C@H](n2(c1(nc(N)[nH]c(=O)c1nc2)))O3))OP([O-])(=O)O[C@H]6([C@@H](O)[C@H](n5(c4(nc(N)[nH]c(=O)c4nc5)))O[C@H](COP(=O)([O-])[O-])6)" "L-DIHYDROXY-PHENYLALANINE" "L-dopa" ["DOPA", "3-hydroxytyrosine", "3,4-dihydroxy-L-phenylalanine", "dihydroxyphenylalanine", "L-dihydroxy-phenylalanine", "levodopa"] "C9H11NO4" 197.19 0 "C([C@H](Cc1(ccc(O)c(O)c1))[NH3+])(=O)[O-]" "L-EPINEPHRINE" "(R)-adrenaline" ["L-epinephrine", "(R)-(-)-adrenaline", "(-)-adrenaline"] "C9H14NO3" 184.214 1 "C[NH2+]C[C@H](O)c1(ccc(c(c1)O)O)" @@ -5463,7 +5472,7 @@ "Lysophosphatidylglycerols-18-1" "a lysophosphatidylglycerol-18:1" ["lysoPG-18:1", "lysoPG18:1"] null null 0 null "Lysophosphatidylglycerols-18-2" "lysophosphatidylglycerol-18:2" ["lysoPG-18:2", "lysoPG18:2"] null null 0 null "Lysophosphatidylglycerols-18-3" "lysophosphatidylglycerol-18:3" ["lysoPG-18:3", "lysoPG18:3"] null null 0 null -"Lysophospholipids" "a lysophospholipid" [] null null 0 null +"Lysophospholipids" "a lysophospholipid" ["a monacyl-sn-glycero-3-phospho-(1'-sn-glycerol)"] null null 0 null "LYSOSOMAL-ENZYME-D-MANNOSE" "an α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-L-asparaginyl-[lysosomal protein]" [] null null 0 "CC(=O)N[C@H]%10(C(O[C@H](CO)[C@@H](O[C@H]9([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO[C@H]3(O[C@@H]([C@H]([C@@H]([C@@H]3O)O)O)CO))O[C@@H]5([C@@H](O[C@@H]4([C@H]([C@@H](O)[C@H](O)[C@@H](CO)O4)O))[C@H]([C@H](O)[C@@H](CO)O5)O)))O[C@@H]8([C@@H](O[C@@H]7([C@@H](O[C@@H]6([C@@H](O)[C@H]([C@H](O)[C@@H](CO)O6)O))[C@H]([C@H](O)[C@H](O7)CO)O))[C@@H](O)[C@@H]([C@H](O8)CO)O)))[C@@H](CO)O9)O))[C@H](O)%10)NC(=O)CC(N[a lysosomal protein])C([a lysosomal protein])=O)" "LYSOSOMAL-ENZYME-N-ETCETERA-MANNOSE" "an α-D-GlcNAc-(phospho)-6-α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-L-asparaginyl-[lysosomal protein]" [] null null -1 "CC(=O)N[C@H]%11(C(O[C@H](CO)[C@@H](O[C@H]%10([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO[C@H]3(O[C@@H]([C@H]([C@@H]([C@@H]3O)O)O)CO))O[C@@H]5([C@@H](O[C@@H]4([C@H]([C@@H](O)[C@H](O)[C@@H](CO)O4)O))[C@H]([C@H](O)[C@@H](CO)O5)O)))O[C@@H]9([C@@H](O[C@@H]8([C@@H](O[C@@H]7([C@@H](O)[C@H]([C@H](O)[C@@H](COP(=O)([O-])O[C@@H]6([C@@H]([C@@H](O)[C@H](O)[C@@H](CO)O6)NC(=O)C))O7)O))[C@H]([C@H](O)[C@H](O8)CO)O))[C@@H](O)[C@@H]([C@H](O9)CO)O)))[C@@H](CO)O%10)O))[C@H](O)%11)NC(=O)C[C@H](N[a lysosomal protein])C([a lysosomal protein])=O)" "LysW-Alpha-Aminoadipate" "an [amino-group carrier protein]-C-terminal-[N-(1,4-dicarboxybutyl)-L-glutamine]" ["an [amino-group carrier protein]-C-terminal-γ-(L-2-aminoadip-2-yl)-L-glutamate", "an [amino-group carrier protein]-C-terminal-[N-(1,4-dicarboxybutan-1-yl)-L-glutamine]"] null null -3 "C(=O)(N[C@H](C(=O)[O-])CCCC([O-])=O)CC[C@@H](C(=O)[O-])N[amino group carrier protein]" @@ -5639,7 +5648,7 @@ "MO+2" "Mo2+" ["molybdenum(II)", "Mo++", "MoII"] "Mo" 95.94 2 "[Mo+2]" "Mo-bis-MGD-Chaperone-Cys-Persulfide" "a [bis(guanylyl molybdopterin) cofactor chaperone]-S-sulfanyl-L-cysteine" [] null null 0 "C(=O)([a bis(guanylyl molybdopterin) cofactor chaperone])[C@@H](N[a bis(guanylyl molybdopterin) cofactor chaperone])CSS" "Mo-bis-MGD-Chaperone-L-cysteine" "a [bis(guanylyl molybdopterin) cofactor chaperone]-L-cysteine" [] null null 0 "C(=O)([a bis(guanylyl molybdopterin) cofactor chaperone])[C@@H](N[a bis(guanylyl molybdopterin) cofactor chaperone])CS" -"Mo-molybdopterin-cofactor" "a W/Mo-pterin cofactor" [] null null 0 null +"Mo-molybdopterin-cofactor" "a W/Mo-molybdopterin cofactor" ["a molybdopterin cofator", "MoCo"] null null 0 null "MOCS3-Cysteine" "a [molybdopterin synthase sulfurtransferase]-L-cysteine" [] null null 0 "C(=O)([a [molybdopterin synthase sulfurtransferase]])[C@@H](N[a [molybdopterin synthase sulfurtransferase]])CS" "MOCS3-Cysteine-Persulfide" "a [molybdopterin synthase sulfurtransferase]-S-sulfanyl-L-cysteine" ["a [molybdopterin synthase sulfurtransferase]-L-cysteine persulfide"] null null 0 "C(=O)([a [molybdopterin synthase sulfurtransferase]])[C@@H](N[a [molybdopterin synthase sulfurtransferase]])CSS" "MOCS3-S-sulfanylcysteine" "a [MOCS3]-S-sulfanylcysteine" [] null null 0 "C([a [molybdopterin synthase sulfurtransferase]])([C@@H](N[a [molybdopterin synthase sulfurtransferase]])CSS)=O" @@ -5729,7 +5738,7 @@ "Mucin-type-glycans" "a mucin-type O-glycan" ["an O-(N-acetylgalactosamine) glycan"] null null 0 "CC(=O)N[C@@H]1([C@@H](O[R2])[C@@H](O)[C@@H](CO[R3])O[C@@H]1OC([R1])[C@@H](C(=O)[a protein])N[a protein])" "Muricholates" "a muricholate" ["a muricholic acid"] "C24H39O5" 407.569 -1 "C[C@@H]([C@H]3(CC[C@H]4([C@@H]2(C(O)C(O)C1(C[C@H](O)CC[C@@](C)1[C@H]2CC[C@](C)34)))))CCC(=O)[O-]" "Mycaminose" "mycaminose" ["3,6-dideoxy-3-(dimethylamino)-D-glucose"] "C8H18NO4" 192.234 1 "C[C@@H](O)[C@@H](O)[C@H]([NH+](C)C)[C@@H](O)C=O" -"Mycobacterial-Arabinogalactans" "a mycobacterial arabinogalactan" ["a microbial arabinogalactan"] null null 0 "C(O)[C@@H]1([C@@H](O)[C@H](O)[C@H](O[a mycobacterial arabinogalactan])O1)" +"Mycobacterial-Arabinogalactans" "a mycobacterial arabinogalactan" ["a microbial arabinogalactan"] null null 0 null "Mycocerosic-Acids" "a mycocerosate" ["a mycocerosic acid"] null null -1 "C(CCCCCCCCCCCC[C@@H]([R1])C[C@@H](C)C[C@@H](C)C[C@@H](C)C([O-])=O)[R2]" "Mycocerosyl-adenylate" "a mycocerosyl-adenylate" [] null null -1 "C(CCCCCCCCCCCC[C@@H]([R1])C[C@@H](C)C[C@@H](C)C[C@@H](C)C(OP(OC[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](O)3))([O-])=O)=O)[R2]" "Mycocerosyl-CoA" "a mycocerosyl-CoA" [] null null -4 "C(CCCCCCCCCCCC[C@@H](C)C[C@@H](C)C[C@@H](C)C[C@@H](C)C(SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(=O)(OP(=O)(OC[C@@H]1([C@@H](OP([O-])(=O)[O-])[C@@H](O)[C@@H](O1)n3(c2(c(c(N)ncn2)nc3))))[O-])[O-])=O)[R]" @@ -5757,6 +5766,7 @@ "Myo-inositol-tetra-kis-phosphates" "a myo-inositol tetrakisphosphate" [] null null 0 null "Myo-inositol-trisphosphates" "a myo-inositol trisphosphate" [] null null 0 null "Myristoylated-Glycine-in-Proteins" "an N-terminal N-myristoyl-glycyl-[protein]" ["a [protein] N-terminal N-myristoyl-glycine", "an N-terminal N-tetradecanoyl-glycine-[protein]"] null null 0 "CCCCCCCCCCCCCC(NCC(=O)[a protein])=O" +"N-1-deoxy-beta-D-fructopyranosylamine" "an N-(1-deoxy-β-D-fructopyranos-1-yl)amine" ["a fructosamine"] null null 1 "C([R])[NH2+]C[C@@]1(O)(OC[C@@H](O)[C@@H](O)[C@H](O)1)" "N-23-DIHYDROXYBENZOYL-L-SERINE" "N-(2,3-dihydroxybenzoyl)-L-serine" ["2-(2,3-dihydroxybenzoyl)amino-3-hydroxy-propanoic acid", "2,3-dihydroxybenzoylserine"] "C10H10NO6" 240.192 -1 "c1(cc(O)c(O)c(c1)C(=O)N[C@@H](CO)C([O-])=O)" "N-4-aminobutylidene-eIF5A-lysine" "an [eIF5A-precursor]-N-(4-aminobutylidene)-lysine" ["an N-(4-aminobutylidene)-[eIF5A-precursor]-lysine"] null null 1 "C([NH3+])CC\C=N/CCCC[C@H](N[an eIF5A protein])C([an eIF5A protein])=O" "N-4-aminobutylidene-enzyme-lysine" "a [deoxyhypusine synthase]-N-(4-aminobutylidene)-lysine" ["an N-(4-aminobutylidene)-[enzyme]-lysine"] null null 1 "C([NH3+])CC\C=N/CCCC[C@H](N[a deoxyhypusine synthase])C([a deoxyhypusine synthase])=O" @@ -6006,7 +6016,7 @@ "NN-Dimethyl-Ornithine-Lipid" "an N,N-dimethylornithine lipid" [] null null 0 "C([R1])[C@@H](OC(C[R2])=O)CC(=O)N[C@H](C([O-])=O)CCC[NH+](C)C" "NNN-Trimethyl-Ornithine-Lipid" "an N,N,N-trimethylornithine lipid" [] null null 0 "C([R1])[C@@H](OC(C[R2])=O)CC(=O)N[C@H](C([O-])=O)CCC[N+](C)(C)C" "No-Alkenyl-Thiohydroximate-O-Sulfates" "an N-(sulfonatooxy)alkanimidothioic acid without a terminal double bond" ["an aliphatic thiohydroximate-O-sulfate without a terminal alkene"] null null -1 "C(S)([R])=NOS(=O)(=O)[O-]" -"NOCARDICIN-A" "nocardicin A" ["(2R)-2-amino-4-{4-[(1E)-{[(3S)-1-[(R)-carboxy(4-hydroxyphenyl)methyl]-2-oxoazetidin-3-yl]carbamoyl}(hydroxyimino)methyl]phenoxy}butanoate"] "C23H23N4O9" 499.456 -1 "C3([C@H](NC(=O)C(\c1(ccc(OCC[C@@H]([NH3+])C(=O)[O-])cc1))=N/O)C(=O)N([C@H](c2(ccc(O)cc2))C(=O)[O-])3)" +"NOCARDICIN-A" "nocardicin A" ["(2R)-2-amino-4-{4-[(1E)-{[(3S)-1-[(R)-carboxy(4-hydroxyphenyl)methyl]-2-oxoazetidin-3-yl]carbamoyl}(hydroxyimino)methyl]phenoxy}butanoate"] "C23H23N4O9" 499.456 -1 "C3([C@H](NC(=O)C(/c1(ccc(OCC[C@@H]([NH3+])C(=O)[O-])cc1))=N/O)C(=O)N([C@H](c2(ccc(O)cc2))C(=O)[O-])3)" "Nocardicins" "a nocardicin" [] null null 0 null "Non-Acetylated-Acetyl-Acceptors" "a non-acetylated acetyl acceptor" ["a non-acetylated acetyl donor"] null null 0 "O[R]" "Non-Acylated-Acyl-Acceptors" "a non-acylated acyl acceptor" ["a non-acylated acyl donor"] null null 0 "O[R]" @@ -6222,6 +6232,7 @@ "PECTATE" "a pectate" ["poly(1,4-α-D-galacturonate)(n)", "(1,4-α-D-D-galactosyluronate)n", "1,4-α-D-galacturonide", "a pectic acid", "an α-D-polygalacturonic acid", "a poly(1,4-α-D-galacturonate)"] null null -3 "C([O-])(=O)[C@@H]1([C@@H]([C@@H]([C@H]([C@H](O1)O[C@H]3([C@@H](C([O-])=O)O[C@H](O[C@H]2([C@@H](C([O-])=O)O[C@H]([R2])[C@@H]([C@H]2O)O))[C@@H]([C@H]3O)O))O)O)[R1])" "Pectin" "a pectin" ["pectin"] null null 0 "COC([C@H]1(O[C@@H]([C@@H]([C@H]([C@H]1[R1])O)O)O[C@H]2([C@H](O[C@@H]([C@@H]([C@H]2O)O)O[C@H]3([C@H](O[C@@H]([C@@H]([C@H]3O)O)[R2])C(=O)OC))C(=O)OC)))=O" "Penams" "a penam" [] null null 0 null +"Penems" "a penem" [] null null -1 "C2(=O)(N1([C@H](SC(/[R2])=C(C([O-])=O)/1)C([R1])2))" "PENICILLIN" "a penicillin" [] null null -1 "CC1(C)(S[C@@H]2([C@H](NC([R])=O)C(=O)N([C@@H](C([O-])=O)1)2))" "PENICILLIN-G" "penicillin G" ["benzylpenicillin"] "C16H17N2O4S" 333.381 -1 "CC3(C)(S[C@H]2(N(C(=O)[C@@H](NC(=O)Cc1(ccccc1))2)[C@@H](C(=O)[O-])3))" "PENTACHLOROPHENOL" "pentachlorophenol" ["PCP"] "C6OCl5" 265.33 -1 "c1(c(c(c([O-])c(Cl)c(Cl)1)Cl)Cl)Cl" @@ -6433,7 +6444,7 @@ "PHOSPHORYL-CHOLINE" "phosphocholine" ["choline-phosphate", "phosphoryl-choline", "O-phosphocholine"] "C5H13NO4P" 182.136 -1 "C[N+](CCOP([O-])([O-])=O)(C)C" "PHOSPHORYL-ETHANOLAMINE" "O-phosphoethanolamine" ["phosphoryl-ethanolamine", "O-phosphorylethanolamine", "phosphoethanolamine", "ethanolamine phosphate", "2-aminoethyl phosphate", "pEtN"] "C2H7NO4P" 140.055 -1 "C(C[NH3+])OP([O-])([O-])=O" "Phosphorylated-Amino-Acids" "a phosphorylated amino acid" [] null null 0 null -"Phosphoserines" "L(or D)-O-phosphoserine" [] "C3H5NO6P" 182.049 -3 "C(OP(=O)([O-])[O-])C(N)C([O-])=O" +"Phosphoserines" "L(or D)-O-phosphoserine" ["a phosphoserine"] "C3H5NO6P" 182.049 -3 "C(OP(=O)([O-])[O-])C(N)C([O-])=O" "Phosphosphingolipids" "a phosphosphingolipid" [] null null 0 null "PHTHALATE" "phthalate" ["phthalic acid", "1,2-benzenedicarboxylic acid", "o-benzenedicarboxylic acid", "benzene-1,2-dicarboxylic acid", "o-phthalic acid", "o-dicarboxybenzene"] "C8H4O4" 164.117 -2 "C(c1(ccccc(C([O-])=O)1))([O-])=O" "Phthioceranic-Acids" "a phthioceranate" ["a phthioceranic acid"] null null -1 "C(CC[C@H]([R1])C[C@H](C)C[C@H](C)C[C@H](C)C[C@H](C)C[C@H](C)C[C@H](C)C[C@H](C)C([O-])=O)[R2]" @@ -6469,10 +6480,10 @@ "Plant-Ceramide-Phosphate" "a dihydroceramide 1-phosphate" ["a plant ceramide 1-phosphate"] null null -2 "CCCCCCCCCCCCCCC[C@H]([C@H](COP([O-])(=O)[O-])NC(=O)[R])O" "Plant-Ceramides-IV" "a (4R)-4-hydroxysphing-8-enine ceramide" ["a plant ceramide (IV)"] null null 0 "CCCCCCCCC/C=C/CCC[C@@H](O)[C@@H](O)[C@@H](NC(=O)[R])CO" "Plant-Hormones" "a plant hormone" [] null null 0 null -"Plasmalogens" "a plasmalogen" ["a 2-acyl-1-alkenyl-sn-glycero-3-phospholipid"] null null -1 "C(/[R1])=C\OC[C@H](COP(O[R3])(=O)[O-])OC(=O)[R2]" +"Plasmalogens" "a plasmalogen" ["a 2-acyl-1-alkenyl-sn-glycero-3-phospholipid"] null null -1 "C(\[R1])=C\OC[C@H](COP(O[R3])(=O)[O-])OC(=O)[R2]" "Plasmanyl-Phospholipids" "a plasmanyl phospholipid" [] null null -1 "C(OC[R1])[C@@H](OC(=O)[R2])COP(=O)([O-])O[R3]" "Plasmanylcholine" "a plasmanylcholine" ["a 1-radyl-2-acyl-sn-glycero-3-phosphocholine", "a 1-organyl-2-acyl-sn-glycero-3-phosphocholine", "an O-1-alkyl-2-acyl-sn-glycero-3-phosphocholine", "a 1-alkyl-2-acylglycerophosphocholine", "a 2-acyl-1-alkyl-sn-glycero-3-phosphocholine"] null null 0 "C[N+](C)(C)CCOP([O-])(=O)OC[C@@H](COC[R1])OC([R2])=O" -"PLASMENYLCHOLINE" "a plasmenylcholine" ["an O-1-Z-alk-1-enyl-2-acyl-sn-glycero-3-phosphocholine", "a choline plasmalogen", "a 1-Z-alkenyl-2-acylglycerophosphocholine", "a 1-Z-alkenyl-2-acyl-sn-glycero-3-phosphocholine", "alkenylphosphatidylcholine (incorrect)"] null null 0 "C(/[R1])=C\OC[C@@H](OC([R2])=O)COP([O-])(=O)OCC[N+](C)(C)C" +"PLASMENYLCHOLINE" "a plasmenylcholine" ["an O-1-Z-alk-1-enyl-2-acyl-sn-glycero-3-phosphocholine", "a choline plasmalogen", "a 1-Z-alkenyl-2-acylglycerophosphocholine", "a 1-Z-alkenyl-2-acyl-sn-glycero-3-phosphocholine", "alkenylphosphatidylcholine (incorrect)"] null null 0 "C(\[R1])=C\OC[C@@H](OC([R2])=O)COP([O-])(=O)OCC[N+](C)(C)C" "Plastoquinols" "a plastoquinol" ["PQ"] "C53H82O2" 751.23 0 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/Cc1(cc(c(c(c1O)C)C)O)" "PLASTOQUINONE" "a plastoquinone" [] "C53H80O2" 749.214 0 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/Cc1(cc(c(c(c1=O)C)C)=O)" "PltL-Cl-pyrrole-2-carboxylate" "a 5-chloro-1H-pyrrole-2-carbonyl-[PltL prolyl-carrier protein]" [] null null -1 "CC(C)(COP(=O)([O-])OC[C@H](N[a peptidyl-carrier protein])C(=O)[a peptidyl-carrier protein])[C@@H](O)C(=O)NCCC(=O)NCCSC(c1(ccc(Cl)[nH]1))=O" @@ -7279,7 +7290,7 @@ "TRI-N-ACETYL-BETA-D-GLUCOSAMINYL" "N-acetyl-β-D-glucosaminyl-1,2-α-D-mannosyl-1,3-(N-acetyl-β-D-glucosaminyl-1,2-α-D-mannosyl-1,6)-(N-acetyl-β-D-glucosaminyl-1,4)-β-D-mannosyl-1,4-N-acetyl-β-D-glucosaminyl-R" [] null null 0 "CC(N[C@H]1([C@@H](O[C@@H]([C@H]([C@@H]1O)O[C@H]2([C@H]([C@H]([C@@H]([C@H](O2)CO[C@@H]3([C@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O[C@H]4([C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)NC(=O)C)))O[C@H]5([C@@H]([C@H]([C@@H]([C@H](O5)CO)O)O)NC(=O)C))O[C@@H]6([C@H]([C@H]([C@@H]([C@H](O6)CO)O)O)O[C@H]7([C@@H]([C@H]([C@@H]([C@H](O7)CO)O)O)NC(=O)C)))O))CO)O[a glycoprotein]))=O" "Tri-trans-polycis-polyprenyl-PPs" "a tri-trans,poly-cis-polyprenyl diphosphate" [] null null 0 null "Triacylglycerides" "a triglyceride" [] null null 0 "C(C(OC([R2])=O)COC(=O)[R3])OC([R1])=O" -"Triacylglycerols" "a triacyl-sn-glycerol" [] null null 0 "C([C@H](OC([R2])=O)COC(=O)[R1])OC([R3])=O" +"Triacylglycerols" "a triacyl-sn-glycerol" ["triacylglycerol"] null null 0 "C([C@H](OC([R2])=O)COC(=O)[R1])OC([R3])=O" "Triazines" "a triazine" [] null null 0 null "Tricarboxylates" "a tricarboxylate" ["a tripartite tricarboxylate"] null null 0 null "TRIMETHYLAMINE" "trimethylamine" ["(CH3)3NH", "(CH3)3NH+", "TMA"] "C3H10N" 60.119 1 "C[NH+](C)C" @@ -7313,10 +7324,10 @@ "tRNA-containing-5-2-Meoxy-2-OxEt-uridine" "a 5-(2-methoxy-2-oxoethyl)uridine in tRNA" ["a tRNA containing 5-(2-methoxy-2-oxoethyl)uridine", "an mcm5U in tRNA", "a 5-methoxycarbonylmethyl-uridine in tRNA"] null null -2 "COC(=O)Cc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" "tRNA-containing-5-CarbMeAminome-2-methUr" "a 5-carboxymethylaminomethyl-2'-O-methyluridine in tRNA" [] null null -3 "CO[C@@H]2([C@H](OP(=O)(O[a tRNA])[O-])[C@@H](COP(=O)([O-])O[a tRNA])O[C@@H](n1(cc(CNCC([O-])=O)c(=O)[nH]c(=O)1))2)" "tRNA-containing-5-CarbMeAminome-2-ThioU" "a 5-carboxymethylaminomethyl-2-thiouridine34 in tRNA" ["a tRNA containing 5-carboxymethylaminomethyl-2-thiouridine34", "cmnm5s2U in tRNA"] null null -2 "C([NH2+]CC([O-])=O)C1(\C(=O)NC(=S)N(\C=1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-containing-5-CarbMeAminome-uridine" "a 5-carboxymethylaminomethyluridine34 in tRNA" ["a tRNA containing 5-carboxymethylaminomethyluridine34"] null null -2 "C([NH2+]CC([O-])=O)c1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" +"tRNA-containing-5-CarbMeAminome-uridine" "a 5-carboxymethylaminomethyluridine34 in tRNA" ["a tRNA containing 5-carboxymethylaminomethyluridine34", "cmnm5U in tRNA"] null null -2 "C([NH2+]CC([O-])=O)c1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" "tRNA-Containing-5-Methylcytosine" "a 5-methylcytosine in tRNA" ["tRNA containing 5-methylcytidine", "tRNA containing 5-methylcytosine"] null null -2 "Cc1(c(N)nc(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" "tRNA-containing-5-taurinomethyluridine" "a 5-taurinomethyluridine in tRNA" ["a tRNA containing 5-taurinomethyluridine"] null null -3 "C(S(=O)(=O)[O-])CCNc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-Containing-5AminoMe-2-ThioUrdines" "a 5-(aminomethyl)-2-thiouridine34 in tRNA" ["a tRNA containing 5-(aminomethyl)-2-thiouridine34"] null null -1 "C([NH3+])C1(\C(=O)NC(=S)N(\C=1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" +"tRNA-Containing-5AminoMe-2-ThioUrdines" "a 5-(aminomethyl)-2-thiouridine34 in tRNA" ["a tRNA containing 5-(aminomethyl)-2-thiouridine34", "nm5s2U in tRNA"] null null -1 "C([NH3+])C1(\C(=O)NC(=S)N(\C=1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" "tRNA-containing-5Me-uridine" "a 5-methyluracil in tRNA" ["a tRNA containing 5-methyluracil"] null null -2 "Cc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" "tRNA-containing-5Me-uridine54" "a 5-methyluracil54 in tRNA" ["a tRNA containing 5-methyluracil54"] null null -2 "Cc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" "tRNA-Containing-5MeAminoMe-2-ThioU" "a 5-[(methylamino)methyl]-2-thiouridine34 in tRNA" ["a 5-[(methylamino)methyl]-2-thiouridylate34 in tRNA", "mnm5S2U"] null null -1 "C[NH2+]CC1(\C(=O)NC(=S)N(\C=1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" @@ -7528,7 +7539,7 @@ "Very-Long-Chain-oxoacyl-CoAs" "a very-long-chain 3-oxoacyl-CoA" [] null null -4 "C(CCCCCCCCCCCCCCCCCCCC(=O)CC(SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(=O)(OP(=O)(OC[C@H]1(O[C@H]([C@@H]([C@@H]1OP([O-])(=O)[O-])O)n3(c2(c(c(N)ncn2)nc3))))[O-])[O-])=O)[R]" "Very-Long-Chain-Trans-23-Dehydroacyl-CoA" "a very-long-chain (2E)-2-enoyl-CoA" ["a very-long-chain trans-2,3-didehydroacyl-CoA", "a very-long-chain trans-2-enoyl-CoA", "a very-long-chain trans-Δ2-enoyl-CoA", "a very-long-chain trans-didehydroacyl-CoA", "a very-long-chain trans-2,3-dehydroacyl-CoA"] null null -4 "C(CCCCCCCCCCCCCCCCCCC/C=C/C(SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(=O)(OP(=O)(OC[C@H]1(O[C@H]([C@@H]([C@@H]1OP([O-])(=O)[O-])O)n3(c2(c(c(N)ncn2)nc3))))[O-])[O-])=O)[R]" "VIM-2" "a VIM-2 epitope" ["αNeuNAc-(2→3)-βGal-(1→4)-βGlcNAc-(1→3)-βGal-(1→4)-[αFuc-(1→3)-βGlcNAc]-R", "NeuNAca2→3Galβl→4GlcNAcβ1→3Galβl→4[Fuca(l→3)GlcNAc]-R"] null null -1 "C[C@@H]6(O[C@@H](O[C@@H]5([C@@H](NC(C)=O)[C@@H](O[C@H](CO)[C@@H](O[C@H]4([C@H](O)[C@@H](O[C@@H]3(O[C@H](CO)[C@@H](O[C@@H]2(O[C@H](CO)[C@H](O)[C@H](O[C@@]1(C(=O)[O-])(C[C@H](O)[C@@H](NC(C)=O)[C@@H](O1)[C@H](O)[C@H](O)CO))[C@@H](O)2))[C@H](O)[C@@H](NC(C)=O)3))[C@@H](O)[C@@H](CO)O4))5)O[R]))[C@H]([C@@H]([C@@H]6O)O)O)" -"Vitamin-A" "vitamin A" ["tocopherol"] null null 0 null +"Vitamin-A" "vitamin A" [] null null 0 null "Vitamin-E" "vitamin E" ["a tocochromenol"] null null 0 "C[C@@]1(Oc2(c(CC1)c(c(c(c2[R2])[R3])O)[R1]))C[R4]" "Vitamins" "a vitamin" [] null null 0 null "Vitamins-B6" "a vitamin B6" [] null null 0 null diff --git a/reconstruction/ecoli/flat/proteins.tsv b/reconstruction/ecoli/flat/proteins.tsv index 9f3df17be..2e6a4f30e 100644 --- a/reconstruction/ecoli/flat/proteins.tsv +++ b/reconstruction/ecoli/flat/proteins.tsv @@ -1,7 +1,7 @@ # Organism: Escherichia coli K-12 substr. MG1655 # Database: EcoCyc -# Version: 28.0 -# Date and time generated: October 30, 2023, 10:07:14 +# Version: 28.1 +# Date and time generated: March 7, 2024, 13:56:38 "id" "common_name" "synonyms" "seq" "experimental_compartment" "computational_compartment" "cleavage_of_initial_methionine" "selenocysteine_at_opal" "protein_feature_cofactors" "in_complex" "1-ACYLGLYCEROL-3-P-ACYLTRANSFER-MONOMER" "1-acylglycerol-3-phosphate O-acyltransferase PlsC" ["ParF", "PlsC"] "MLYIFRLIITVIYSILVCVFGSIYCLFSPRNPKHVATFGHMFGRLAPLFGLKVECRKPTDAESYGNAIYIANHQNNYDMVTASNIVQPPTVTVGKKSLLWIPFFGQLYWLTGNLLIDRNNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGRGLLPFKTGAFHAAIAAGVPIIPVCVSTTSNKINLNRLHNGLVIVEMLPPIDVSQYGKDQVRELAAHCRSIMEQKIAELDKEVAEREAAGKV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "1-PFK-MONOMER" "1-phosphofructokinase" ["Fpk", "FruK"] "MSRRVATITLNPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGGFLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGEVTDFNFSGFEVTPADWERFVTDSLSWLGQFDMVCVSGSLPSGVSPEAFTDWMTRLRSQCPCIIFDSSREALVAGLKAAPWLVKPNRRELEIWAGRKLPEMKDVIEAAHALREQGIAHVVISLGAEGALWVNASGEWIAKPPSVDVVSTVGAGDSMVGGLIYGLLMRESSEHTLRLATAVAALAVSQSNVGITDRPQLAAMMARVDLQPFN" [] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -14,7 +14,7 @@ "3-OXOACYL-ACP-REDUCT-MONOMER" "3-oxoacyl-[acyl-carrier-protein] reductase FabG" ["FabG", "3-oxoacyl-[acyl-carrier-protein] reductase subunit"] "MNFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGGAQEIANAVAFLASDEAAYITGETLHVNGGMYMV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"CA+2": 3} 1 "3-OXOACYL-ACP-SYNTHII-MONOMER" "3-oxoacyl-[acyl carrier protein] synthase 2" ["Vtr", "Cvc", "VtrB", "FabJ", "FabF", "β-ketoacyl-ACP synthase II", "β-ketoacyl-[acyl carrier protein] synthase II"] "MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIFKKI" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "4OHBENZOATE-OCTAPRENYLTRANSFER-MONOMER" null ["Cyr", "UbiA"] "MEWSLTQNKLLAFHRLMRTDKPIGALLLLWPTLWALWVATPGVPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARALFVVLVLISFLLVLTLNTMTILLSIAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESVPLSCWLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQYDKLIIGILQIGVLALMAIIGELNGLGWGYYWSILVAGALFVYQQKLIANREREACFKAFMNNNYVGLVLFLGLAMSYWHF" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"6PFK-1-MONOMER" "6-phosphofructokinase 1" ["PfkA", "6-phosphofructokinase I"] "MIKKIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQRISVVEVMGRYCGDLTLAAAIAGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAIVAITEHMCDVDELAHFIEKETGRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCVGIQNEQLVHHDIIDAIENMKRPFKGDWLDCAKKLY" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 +"6PFK-1-MONOMER" "6-phosphofructokinase 1" ["PfkA", "6-phosphofructokinase I"] "MIKKIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQRISVVEVMGRYCGDLTLAAAIAGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAIVAITEHMCDVDELAHFIEKETGRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCVGIQNEQLVHHDIIDAIENMKRPFKGDWLDCAKKLY" ["CCO-CYTOSOL"] ["CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "6PFK-2-MONOMER" "6-phosphofructokinase 2" ["PfkB", "6-phosphofructokinase II"] "MVRIYTLTLAPSLDSATITPQIYPEGKLRCTAPVFEPGGGGINVARAIAHLGGSATAIFPAGGATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGEQYRFVMPGAALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAAQKQGIRCIVDSSGEALSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMVRFGVAAGSAATLNQGTRLCSHDDTQKIYAYLSR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"K+": 1, "MG+2": 1} 1 "6PGLUCONDEHYDROG-MONOMER" "6-phosphogluconate dehydrogenase, decarboxylating" ["Gnd"] "MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "6PGLUCONOLACT-MONOMER" null ["Pgl", "YbhE"] "MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -43,7 +43,7 @@ "ACYLCOADEHYDROG-MONOMER" "acyl-CoA dehydrogenase" ["FadE", "YafH"] "MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWSAWVLVPLAIILVPFNFAPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQGKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTDEQKDHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGIVCMGEWQGQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPEKLLGGAEDLGITCALIPTTTPGVEIGRRHFPLNVPFQNGPTRGKDVFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGQSNFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLFKHIGHVGSNKVRSFWLGLTRGLTSSTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDILSQLYLASAVLKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLLQNFPNRVVAGLLNVVIFPTGRHYLAPSDKLDHKVAKILQVPNATRSRIGRGQYLTPSEHNPVGLLEEALVDVIAADPIHQRICKELGKNLPFTRLDELAHNALVKGLIDKDEAAILVKAEESRLRSINVDDFDPEELATKPVKLPEKVRKVEAA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "ACYLCOASYN-MONOMER" "long-chain-fatty-acid—CoA ligase" ["OldD", "FadD", "fatty acyl-CoA synthetase"] "MKKVWLNRYPADVPTEINPDRYQSLVDMFEQSVARYADQPAFVNMGEVMTFRKLEERSRAFAAYLQQGLGLKKGDRVALMMPNLLQYPVALFGILRAGMIVVNVNPLYTPRELEHQLNDSGASAIVIVSNFAHTLEKVVDKTAVQHVILTRMGDQLSTAKGTVVNFVVKYIKRLVPKYHLPDAISFRSALHNGYRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQVNATYGPLLHPGKELVVTALPLYHIFALTINCLLFIELGGQNLLITNPRDIPGLVKELAKYPFTAITGVNTLFNALLNNKEFQQLDFSSLHLSAGGGMPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDDNEVPPGQPGELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPSLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKVDNKA" ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 1 "ADCLY-MONOMER" "aminodeoxychorismate lyase" ["PabC"] "MFLINGHKQESLAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQRLQDACQRLMISCDFWPQLEQEMKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALSPVRLGRNPHLAGIKHLNRLEQVLIRSHLEQTNADEALVLDSEGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVMPVCACGDVSFSSATLYEYLAPLCERPN" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"ADENODEAMIN-MONOMER" "adenosine deaminase" ["Add"] "MIDTTLPLTDIHRHLDGNIRPQTILELGRQYNISLPAQSLETLIPHVQVIANEPDLVSFLTKLDWGVKVLASLDACRRVAFENIEDAARHGLHYVELRFSPGYMAMAHQLPVAGVVEAVIDGVREGCRTFGVQAKLIGIMSRTFGEAACQQELEAFLAHRDQITALDLAGDELGFPGSLFLSHFNRARDAGWHITVHAGEAAGPESIWQAIRELGAERIGHGVKAIEDRALMDFLAEQQIGIESCLTSNIQTSTVAELAAHPLKTFLEHGIRASINTDDPGVQGVDIIHEYTVAAPAAGLSREQIRQAQINGLEMAFLSAEEKRALREKVAAK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 +"ADENODEAMIN-MONOMER" "adenosine deaminase" ["Add"] "MIDTTLPLTDIHRHLDGNIRPQTILELGRQYNISLPAQSLETLIPHVQVIANEPDLVSFLTKLDWGVKVLASLDACRRVAFENIEDAARHGLHYVELRFSPGYMAMAHQLPVAGVVEAVIDGVREGCRTFGVQAKLIGIMSRTFGEAACQQELEAFLAHRDQITALDLAGDELGFPGSLFLSHFNRARDAGWHITVHAGEAAGPESIWQAIRELGAERIGHGVKAIEDRALMDFLAEQQIGIESCLTSNIQTSTVAELAAHPLKTFLEHGIRASINTDDPGVQGVDIIHEYTVAAPAAGLSREQIRQAQINGLEMAFLSAEEKRALREKVAAK" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 "ADENPRIBOSYLTRAN-MONOMER" "adenine phosphoribosyltransferase" ["Apt"] "MTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRLEKQGITSYSLVPFPGH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "ADENYL-KIN-MONOMER" "adenylate kinase" ["PlsA", "DnaW", "Adk"] "MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "ADENYLATECYC-MONOMER" null ["Cya", "CyaA"] "MYLYIETLKQRLDAINQLRVDRALAAMGPAFQQVYSLLPTLLHYHHPLMPGYLDGNVPKGICLYTPDETQRHYLNELELYRGMSVQDPPKGELPITGVYTMGSTSSVGQSCSSDLDIWVCHQSWLDSEERQLLQRKCSLLENWAASLGVEVSFFLIDENRFRHNESGSLGGEDCGSTQHILLLDEFYRTAVRLAGKRILWNMVPCDEEEHYDDYVMTLYAQGVLTPNEWLDLGGLSSLSAEEYFGASLWQLYKSIDSPYKAVLKTLLLEAYSWEYPNPRLLAKDIKQRLHDGEIVSFGLDPYCMMLERVTEYLTAIEDFTRLDLVRRCFYLKVCEKLSRERACVGWRRAVLSQLVSEWGWDEARLAMLDNRANWKIDQVREAHNELLDAMMQSYRNLIRFARRNNLSVSASPQDIGVLTRKLYAAFEALPGKVTLVNPQISPDLSEPNLTFIYVPPGRANRSGWYLYNRAPNIESIISHQPLEYNRYLNKLVAWAWFNGLLTSRTRLYIKGNGIVDLPKLQEMVADVSHHFPLRLPAPTPKALYSPCEIRHLAIIVNLEYDPTAAFRNQVVHFDFRKLDVFSFGENQNCLVGSVDLLYRNSWNEVRTLHFNGEQSMIEALKTILGKMHQDAAPPDSVEVFCYSQHLRGLIRTRVQQLVSECIELRLSSTRQETGRFKALRVSGQTWGLFFERLNVSVQKLENAIEFYGAISHNKLHGLSVQVETNHVKLPAVVDGFASEGIIQFFFEETQDENGFNIYILDESNRVEVYHHCEGSKEELVRDVSRFYSSSHDRFTYGSSFINFNLPQFYQIVKVDGREQVIPFRTKSIGNMPPANQDHDTPLLQQYFS" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -69,7 +69,7 @@ "ALDHDEHYDROG-MONOMER" "γ-glutamyl-γ-aminobutyraldehyde dehydrogenase" ["AldH", "PuuC"] "MNFHHLAYWQDKALSLAIENRLFINGEYTAAAENETFETVDPVTQAPLAKIARGKSVDIDRAMSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELALLETLDTGKPIRHSLRDDIPGAARAIRWYAEAIDKVYGEVATTSSHELAMIVREPVGVIAAIVPWNFPLLLTCWKLGPALAAGNSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLNVVTGFGHEAGQALSRHNDIDAIAFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIVFADCPDLQQAASATAAGIFYNQGQVCIAGTRLLLEESIADEFLALLKQQAQNWQPGHPLDPATTMGTLIDCAHADSVHSFIREGESKGQLLLDGRNAGLAAAIGPTIFVDVDPNASLSREEIFGPVLVVTRFTSEEQALQLANDSQYGLGAAVWTRDLSRAHRMSRRLKAGSVFVNNYNDGDMTVPFGGYKQSGNGRDKSLHALEKFTELKTIWISLEA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "ALDOSE1EPIM-MONOMER" "galactose-1-epimerase" ["GalM"] "MLNETPALAPDGQPYRLLTLRNNAGMVVTLMDWGATLLSARIPLSDGSVREALLGCASPECYQDQAAFLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQLHGGPEGFDKRRWQIVNQNDRQVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITYRATVDKPCPVNMTNHVYFNLDGEQSDVRNHKLQILADEYLPVDEGGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRKVKGYDHAFLLQAKGDGKKVAAHVWSADEKLQLKVYTTAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFLPDSPNHPEWPQPDCFLRPGEEYSSLTEYQFIAE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "ALKAPHOSPHA-MONOMER" "alkaline phosphatase" ["PsiA", "PhoA"] "MKQSTIALALLPLLFTPVTKARTPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {"MG+2": 1, "ZN+2": 2} 1 -"ALPHA-AMYL-CYTO-MONOMER" null ["YedC", "AmyA"] "MRNPTLLQCFHWYYPEGGKLWPELAERADGFNDIGINMVWLPPAYKGASGGYSVGYDSYDLFDLGEFDQKGSIPTKYGDKAQLLAAIDALKRNDIAVLLDVVVNHKMGADEKEAIRVQRVNADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCFSGIDHIENPDEDGIFKIVNDYTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKYWARWVMEQTQCDGFRLDAVKHIPAWFYKEWIEHVQEVAPKPLFIVAEYWSHEVDKLQTYIDQVEGKTMLFDAPLQMKFHEASRMGRDYDMTQIFTGTLVEADPFHAVTLVANHDTQPLQALEAPVEPWFKPLAYALILLRENGVPSVFYPDLYGAHYEDVGGDGQTYPIDMPIIEQLDELILARQRFAHGVQTLFFDHPNCIAFSRSGTDEFPGCVVVMSNGDDGEKTIHLGENYGNKTWRDFLGNRQERVVTDENGEATFFCNGGSVSVWVIEEVI" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"CA+2": 1} 0 +"ALPHA-AMYL-CYTO-MONOMER" null ["YedC", "AmyA"] "MRNPTLLQCFHWYYPEGGKLWPELAERADGFNDIGINMVWLPPAYKGASGGYSVGYDSYDLFDLGEFDQKGSIPTKYGDKAQLLAAIDALKRNDIAVLLDVVVNHKMGADEKEAIRVQRVNADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCFSGIDHIENPDEDGIFKIVNDYTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKYWARWVMEQTQCDGFRLDAVKHIPAWFYKEWIEHVQEVAPKPLFIVAEYWSHEVDKLQTYIDQVEGKTMLFDAPLQMKFHEASRMGRDYDMTQIFTGTLVEADPFHAVTLVANHDTQPLQALEAPVEPWFKPLAYALILLRENGVPSVFYPDLYGAHYEDVGGDGQTYPIDMPIIEQLDELILARQRFAHGVQTLFFDHPNCIAFSRSGTDEFPGCVVVMSNGDDGEKTIHLGENYGNKTWRDFLGNRQERVVTDENGEATFFCNGGSVSVWVIEEVI" ["CCO-CYTOSOL"] ["CCO-EXTRACELLULAR", "CCO-CYTOSOL"] 0 [] {"CA+2": 1} 0 "ALPHA-AMYL-PERI-MONOMER" null ["MalS"] "MKLAACFLTLLPGFAVAASWTSPGFPAFSEQGTGTFVSHAQLPKGTRPLTLNFDQQCWQPADAIKLNQMLSLQPCSNTPPQWRLFRDGEYTLQIDTRSGTPTLMISIQNAAEPVASLVRECPKWDGLPLTVDVSATFPEGAAVRDYYSQQIAIVKNGQIMLQPAATSNGLLLLERAETDTSAPFDWHNATVYFVLTDRFENGDPSNDQSYGRHKDGMAEIGTFHGGDLRGLTNKLDYLQQLGVNALWISAPFEQIHGWVGGGTKGDFPHYAYHGYYTQDWTNLDANMGNEADLRTLVDSAHQRGIRILFDVVMNHTGYATLADMQEYQFGALYLSGDEVKKSLGERWSDWKPAAGQTWHSFNDYINFSDKTGWDKWWGKNWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTTASGLPVFYKNKMDTHAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKTEASAALREWKKANPDKALDDKPFWMTGEAWGHGVMQSDYYRHGFDAMINFDYQEQAAKAVDCLAQMDTTWQQMAEKLQGFNVLSYLSSHDTRLFREGGDKAAELLLLAPGAVQIFYGDESSRPFGPTGSDPLQGTRSDMNWQDVSGKSAASVAHWQKISQFRARHPAIGAGKQTTLLLKQGYGFVREHGDDKVLVVWAGQQ" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {"CA+2": 1} 0 "ALPHACOMP-MONOMER" "sulfite reductase, flavoprotein subunit" ["CysJ", "SiR-FP", "α subunit"] "MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGMRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKDGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY" [] ["CCO-CYTOSOL"] 1 [] {} 1 "ALPHAGALACTOSID-MONOMER" "α-galactosidase" ["MelA"] "MMSAPKITFIGAGSTIFVKNILGDVFHREALKTAHIALMDIDPTRLEESHIVVRKLMDSAGASGKITCHTQQKEALEDADFVVVAFQIGGYEPCTVTDFEVCKRHGLEQTIADTLGPGGIMRALRTIPHLWQICEDMTEVCPDATMLNYVNPMAMNTWAMYARYPHIKQVGLCHSVQGTAEELARDLNIDPATLRYRCAGINHMAFYLELERKTADGSYVNLYPELLAAYEAGQAPKPNIHGNTRCQNIVRYEMFKKLGYFVTESSEHFAEYTPWFIKPGREDLIERYKVPLDEYPKRCVEQLANWHKELEEYKKASRIDIKPSREYASTIMNAIWTGEPSVIYGNVRNDGLIDNLPQGCCVEVACLVDANGIQPTKVGTLPSHLAALMQTNINVQTLLTEAILTENRDRVYHAAMMDPHTAAVLGIDEIYALVDDLIAAHGDWLPGWLHR" ["CCO-CYTOSOL"] [] 0 [] {"MN+2": 1} 1 @@ -84,12 +84,12 @@ "ANGLYC3PDEHYDROGSUBUNITB-MONOMER" "anaerobic glycerol-3-phosphate dehydrogenase subunit B" ["GlpB"] "MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYSLLEPQRVLDLACQAQALIAESGAQLQGSVELAHQRVTPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELGLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 1 "ANGLYC3PDEHYDROGSUBUNITC-MONOMER" "anaerobic glycerol-3-phosphate dehydrogenase subunit C" ["GlpC"] "MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRNIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"CPD-7": 2} 1 "ANSA-MONOMER" "L-asparaginase 1" ["AnsA", "asparaginase I", "AnsI", "EcAI"] "MQKKSIYVAYTGGTIGMQRSEQGYIPVSGHLQRQLALMPEFHRPEMPDFTIHEYTPLMDSSDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANYPINEVTLFFNNRLYRGNRTTKAHADGFDAFASPNLPPLLEAGIHIRRLNTPPAPHGEGELIVHPITPQPIGVVTIYPGISADVVRNFLRQPVKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVNLTQCMSGKVNMGGYATGNALAHAGVIGGADMTVEATLTKLHYLLSQELDTETIRKAMSQNLRGELTPDD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"ANSB-MONOMER" "L-asparaginase 2" ["AnsB", "asparaginase II", "AnsII", "EcAII"] "MEFFKKTALAALVMGFSGAALALPNITILATGGTIAGGGDSATKSNYTVGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQY" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 +"ANSB-MONOMER" "L-asparaginase 2" ["AnsB", "asparaginase II", "AnsII", "EcAII"] "MEFFKKTALAALVMGFSGAALALPNITILATGGTIAGGGDSATKSNYTVGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQY" ["CCO-PERI-BAC"] ["CCO-CYTOSOL", "CCO-PERI-BAC"] 0 [] {} 1 "ANSP-MONOMER" null ["YncF", "AnsP", "L-asparagine permease"] "MSKHDTDTSDQHAAKRRWLNAHEEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYPNGTYTIAALPIIGILLVIGWFGVRKRVAEIHSTAPVVEEDEEKQEIVFKPETAS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "ANTHRANSYNCOMPI-MONOMER" "anthranilate synthase subunit TrpE" ["TryD", "TrpE", "α subunit", "anthranilate synthase component I"] "MQTQKPTLELLTCEGAYRDNPTALFHQLCGDRPATLLLESADIDSKDDLKSLLLVDSALRITALGDTVTIQALSGNGEALLALLDNALPAGVESEQSPNCRVLRFPPVSPLLDEDARLCSLSVFDAFRLLQNLLNVPKEEREAMFFGGLFSYDLVAGFEDLPQLSAENNCPDFCFYLAETLMVIDHQKKSTRIQASLFAPNEEEKQRLTARLNELRQQLTEAAPPLPVVSVPHMRCECNQSDEEFGGVVRLLQKAIRAGEIFQVVPSRRFSLPCPSPLAAYYVLKKSNPSPYMFFMQDNDFTLFGASPESSLKYDATSRQIEIYPIAGTRPRGRRADGSLDRDLDSRIELEMRTDHKELSEHLMLVDLARNDLARICTPGSRYVADLTKVDRYSYVMHLVSRVVGELRHDLDALHAYRACMNMGTLSGAPKVRAMQLIAEAEGRRRGSYGGAVGYFTAHGDLDTCIVIRSALVENGIATVQAGAGVVLDSVPQSEADETRNKARAVLRAIATAHHAQETF" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "ANTHRANSYNCOMPII-MONOMER" "anthranilate synthase subunit TrpD" ["TrpD", "TrpGD", "anthranilate synthase component II"] "MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAGEILHGKASSIEHDGQAMFAGLTNPLPVARYHSLVGSNIPAGLTINAHFNGMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQQKLEPANTLQPILEKLYQAQTLSQQESHQLFSAVVRGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPDYLFADIVGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNADKSRQALDELGVCFLFAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGVYSPELVLPIAETLRVLGYQRAAVVHSGGMDEVSLHAPTIVAELHDGEIKSYQLTAEDFGLTPYHQEQLAGGTPEENRDILTRLLQGKGDAAHEAAVAANVAMLMRLHGHEDLQANAQTVLEVLRSGSAYDRVTALAARG" [] ["CCO-CYTOSOL"] 1 [] {} 1 "APHA-MONOMER" "acid phosphatase / phosphotransferase" ["HobH", "YjbP", "AphA"] "MRKITQAISAVCLLFALNSSAVALASSPSPLNPGTNVARLAEQAPIHWVSVAQIENSLAGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDKPGQNTKSQWLQDKNIRIFYGDSDNDITAARDVGARGIRILRASNSTYKPLPQAGAFGEEVIVNSEY" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {"MG+2": 1} 1 -"APPA-MONOMER" "periplasmic phosphoanhydride phosphatase/multiple inositol-polyphosphate phosphatase" ["AppA"] "MKAILIPFLSLLIPLTPQSAFAQSEPELKLESVVIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSHQWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGGALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEARIPACSL" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 +"APPA-MONOMER" "periplasmic phosphoanhydride phosphatase/multiple inositol-polyphosphate phosphatase" ["AppA"] "MKAILIPFLSLLIPLTPQSAFAQSEPELKLESVVIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSHQWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGGALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEARIPACSL" ["CCO-PERI-BAC"] ["CCO-LYSOSOME", "CCO-PERI-BAC"] 0 [] {} 1 "APPB-MONOMER" "cytochrome bd-II subunit 2" ["CyxB", "AppB", "CbdB"] "MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNENELY" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "APPC-MONOMER" "cytochrome bd-II subunit 1" ["CyxA", "CbdA", "AppC"] "MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTGKTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWSFYSNYVGDIFGAPLAMEALMAFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNLSALWILNANGWMQYPTGAHFDIDTLRMEMTSFSELVFNPVSQVKFVHTVMAGYVTGAMFIMAISAWYLLRGRERNVALRSFAIGSVFGTLAIIGTLQLGDSSAYEVAQVQPVKLAAMEGEWQTEPAPAPFHVVAWPEQDQERNAFALKIPALLGILATHSLDKPVPGLKNLMAETYPRLQRGRMAWLLMQEISQGNREPHVLQAFRGLEGDLGYGMLLSRYAPDMNHVTAAQYQAAMRGAIPQVAPVFWSFRIMVGCGSLLLLVMLIALVQTLRGKIDQHRWVLKMALWSLPLPWIAIEAGWFMTEFGRQPWAIQDILPTYSAHSALTTGQLAFSLIMIVGLYTLFLIAEVYLMQKYARLGPSAMQSEQPTQQQG" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {"PROTOHEME": 1} 1 "AQPZ-MONOMER" "water channel AqpZ" ["BniP", "AqpZ"] "MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 @@ -163,7 +163,7 @@ "B0511-MONOMER" "allantoin transporter" ["AllW", "AllP", "YbbW"] "MEHQRKLFQQRGYSEDLLPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLACLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENGGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFREQALGQTLGLVVAYILFAVAGVCIIAGASIHYGADTWNVLDIVQRWDSLFASFFAVLVILMTTISTNATGNIIPAGYQIAAIAPTKLTYKNGVLIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMMAHYFVVMRGQINLDELYTAPGDYKYYDNGFNLTAFSVTLVAVILSLGGKFIHFMEPLSRVSWFVGVIVAFAAYALLKKRTTAEKTGEQKTIG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B0612-MONOMER" null ["YbdS", "CitT", "CitT citrate DASS Transporter"] "MSLAKDNIWKLLAPLVVMGVMFLIPVPDGMPPQAWHYFAVFVAMIVGMILEPIPATAISFIAVTICVIGSNYLLFDAKELADPAFNAQKQALKWGLAGFSSTTVWLVFGAFIFALGYEVSGLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNTARTGGTVFPVIKNLPPLFKSFPNDPSARRIGGYLMWMMVISTSLSSSMFVTGAAPNVLGLEFVSKIAGIQISWLQWFLCFLPVGVILLIIAPWLSYVLYKPEITHSEEVATWAGDELKTMGALTRREWTLIGLVLLSLGLWVFGSEVINATAVGLLAVSLMLALHVVPWKDITRYNSAWNTLVNLATLVVMANGLTRSGFIDWFAGTMSTHLEGFSPNATVIVLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYATGPGVIIYGCGYVKSKDYWRLGAIFGVIYISMLLLVGWPILAMWN" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B0709-MONOMER" "dipeptide:H+ symporter DtpD" ["DtpD", "YbgH"] "MNKHASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYNDTHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITILFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALACVGLVLMIWLYQALKFRNRALALES" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"B0752-MONOMER" "Zn2+/Cd2+/Ni2+/Cu2+ exporter" ["ZitB", "YbgR", "ZitB zinc CDF transporter"] "MAHSHSHTSSHLPEDNNARRLLYAFGVTAGFMLVEVVGGFLSGSLALLADAGHMLTDTAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVVITILIVWEAIERFRTPRPVEGGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIWTGWTPADPILSILVSLLVLRSAWRLLKDSVNELLEGAPVSLDIAELKRRMCREIPEVRNVHHVHVWMVGEKPVMTLHVQVIPPHDHDALLDQIQHYLMDHYQIEHATIQMEYQPCHGPDCHLNEGVSGHSHHHH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"B0752-MONOMER" "Zn2+/Cd2+/Ni2+/Cu2+ exporter" ["ZitB", "YbgR", "ZitB zinc CDF transporter"] "MAHSHSHTSSHLPEDNNARRLLYAFGVTAGFMLVEVVGGFLSGSLALLADAGHMLTDTAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVVITILIVWEAIERFRTPRPVEGGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIWTGWTPADPILSILVSLLVLRSAWRLLKDSVNELLEGAPVSLDIAELKRRMCREIPEVRNVHHVHVWMVGEKPVMTLHVQVIPPHDHDALLDQIQHYLMDHYQIEHATIQMEYQPCHGPDCHLNEGVSGHSHHHH" ["CCO-PM-BAC-NEG"] ["CCO-VACUOLE", "CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B0770-MONOMER" "putative tricarboxylate transporter" ["YbhI"] "MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B0899-MONOMER" "DUF883 domain-containing protein YgaM" ["YgaM"] "MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARSKAQALLKETRARMHGRTRVQQAARDAVGCADSFVRERPWCSVGTAAAVGIFIGALLSMRKS" ["CCO-CYTOSOL"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B1006-MONOMER" "pyrimidine:H+ symporter" ["YcdG", "RutG"] "MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRKLVDVPPPEVVHQEP" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -205,7 +205,7 @@ "BASS-MONOMER" "sensor histidine kinase BasS" ["DgkR", "BasS", "PmrB"] "MHFLRRPISLRQRLILTIGAILLVFELISVFWLWHESTEQIQLFEQALRDNRNNDRHIMREIREAVASLIVPGVFMVSLTLFICYQAVRRITRPLAELQKELEARTADNLTPIAIHSATLEIEAVVSALNDLVSRLTSTLDNERLFTADVAHELRTPLAGVRLHLELLAKTHHIDVAPLVARLDQMMESVSQLLQLARAGQSFSSGNYQHVKLLEDVILPSYDELSTMLDQRQQTLLLPESAADITVQGDATLLRMLLRNLVENAHRYSPQGSNIMIKLQEDDGAVMAVEDEGPGIDESKCGELSKAFVRMDSRYGGIGLGLSIVSRITQLHHGQFFLQNRQETSGTRAWVRLKKDQYVANQI" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 "BCCP-MONOMER" "biotin carboxyl carrier protein" ["FabE", "AccB", "apo-[acetyl-CoA:carbon-dioxide ligase (ADP forming)]", "BCCP"] "MDIRKIKKLIELVEESGISELEISEGEESVRISRAAPAASFPVMQQAYAAPMMQQPAQSNAAAPATVPSMEAPAAAEISGHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "BCR-MONOMER" "multidrug efflux pump Bcr" ["Sur", "SuxA", "BicR", "BicA", "Bcr"] "MTTRQHSSFAIVFILGLLAMLMPLSIDMYLPALPVISAQFGVPAGSTQMTLSTYILGFALGQLIYGPMADSFGRKPVVLGGTLVFAAAAVACALANTIDQLIVMRFFHGLAAAAASVVINALMRDIYPKEEFSRMMSFVMLVTTIAPLMAPIVGGWVLVWLSWHYIFWILALAAILASAMIFFLIKETLPPERRQPFHIRTTIGNFAALFRHKRVLSYMLASGFSFAGMFSFLSAGPFVYIEINHVAPENFGYYFALNIVFLFVMTIFNSRFVRRIGALNMFRSGLWIQFIMAAWMVISALLGLGFWSLVVGVAAFVGCVSMVSSNAMAVILDEFPHMAGTASSLAGTFRFGIGAIVGALLSLATFNSAWPMIWSIAFCATSSILFCLYASRPKKR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"BETA-GLUCURONID-MONOMER" "β-glucuronidase" ["GusA", "GurA", "UidA"] "MLRPVETPTREIKKLDGLWAFSLDRENCGIDQRWWESALQESRAIAVPGSFNDQFADADIRNYAGNVWYQREVFIPKGWAGQRIVLRFDAVTHYGKVWVNNQEVMEHQGGYTPFEADVTPYVIAGKSVRITVCVNNELNWQTIPPGMVITDENGKKKQSYFHDFFNYAGIHRSVMLYTTPNTWVDDITVVTHVAQDCNHASVDWQVVANGDVSVELRDADQQVVATGQGTSGTLQVVNPHLWQPGEGYLYELCVTAKSQTECDIYPLRVGIRSVAVKGEQFLINHKPFYFTGFGRHEDADLRGKGFDNVLMVHDHALMDWIGANSYRTSHYPYAEEMLDWADEHGIVVIDETAAVGFNLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAIKELIARDKNHPSVVMWSIANEPDTRPQGAREYFAPLAEATRKLDPTRPITCVNVMFCDAHTDTISDLFDVLCLNRYYGWYVQSGDLETAEKVLEKELLAWQEKLHQPIIITEYGVDTLAGLHSMYTDMWSEEYQCAWLDMYHRVFDRVSAVVGEQVWNFADFATSQGILRVGGNKKGIFTRDRKPKSAAFLLQKRWTGMNFGEKPQQGGKQ" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 +"BETA-GLUCURONID-MONOMER" "β-glucuronidase" ["GusA", "GurA", "UidA"] "MLRPVETPTREIKKLDGLWAFSLDRENCGIDQRWWESALQESRAIAVPGSFNDQFADADIRNYAGNVWYQREVFIPKGWAGQRIVLRFDAVTHYGKVWVNNQEVMEHQGGYTPFEADVTPYVIAGKSVRITVCVNNELNWQTIPPGMVITDENGKKKQSYFHDFFNYAGIHRSVMLYTTPNTWVDDITVVTHVAQDCNHASVDWQVVANGDVSVELRDADQQVVATGQGTSGTLQVVNPHLWQPGEGYLYELCVTAKSQTECDIYPLRVGIRSVAVKGEQFLINHKPFYFTGFGRHEDADLRGKGFDNVLMVHDHALMDWIGANSYRTSHYPYAEEMLDWADEHGIVVIDETAAVGFNLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAIKELIARDKNHPSVVMWSIANEPDTRPQGAREYFAPLAEATRKLDPTRPITCVNVMFCDAHTDTISDLFDVLCLNRYYGWYVQSGDLETAEKVLEKELLAWQEKLHQPIIITEYGVDTLAGLHSMYTDMWSEEYQCAWLDMYHRVFDRVSAVVGEQVWNFADFATSQGILRVGGNKKGIFTRDRKPKSAAFLLQKRWTGMNFGEKPQQGGKQ" ["CCO-CYTOSOL"] ["CCO-EXTRACELLULAR", "CCO-CYTOSOL"] 0 [] {} 1 "BETACOMP-MONOMER" "sulfite reductase, hemoprotein subunit" ["CysI", "SiR-HP", "β subunit"] "MSEKHPGPLVVEGKLTDAERMKHESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD" [] [] 1 [] {"CPD-7": 1, "SIROHEME": 1} 1 "BETAGALACTOSID-MONOMER" "β-galactosidase" ["LacZ"] "MTMITDSLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWRFAWFPAPEAVPESWLECDLPEADTVVVPSNWQMHGYDAPIYTNVTYPITVNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLPSEFDLSAFLRAGENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISDFHVATRFNDDFSRAVLEAEVQMCGELRDYLRVTVSLWQGETQVASGTAPFGGEIIDERGGYADRVTLRLNVENPKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIETHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLILCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGDTPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPESAGQLWLTVRVVQPNATAWSEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQFNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSEATRIDPNAWVERWKAAGHYQAEAALLQCTADTLADAVLITTAHAWQHQGKTLFISRKTYRIDGSGQMAITVDVEVASDTPHPARIGLNCQLAQVAERVNWLGLGPQENYPDRLTAACFDRWDLPLSDMYTPYVFPSENGLRCGTRELNYGPHQWRGDFQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRYHYQLVWCQK" [] [] 1 [] {"MG+2": 2, "NA+": 1} 1 "BETT-MONOMER" null ["BetT"] "MTDLSHSREKDKINPVVFYTSAGLILLFSLTTILFRDFSALWIGRTLDWVSKTFGWYYLLAATLYIVFVVCIACSRFGSVKLGPEQSKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYRYNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPDSMAAKAALIALSVIIATISVTSGVDKGIRVLSELNVALALGLILFVLFMGDTSFLLNALVLNVGDYVNRFMGMTLNSFAFDRPVEWMNNWTLFFWAWWVAWSPFVGLFLARISRGRTIRQFVLGTLIIPFTFTLLWLSVFGNSALYEIIHGGAAFAEEAMVHPERGFYSLLAQYPAFTFSASVATITGLLFYVTSADSGALVLGNFTSQLKDINSDAPGWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMGLPFSFVIFFVMAGLYKSLKVEDYRRESANRDTAPRPLGLQDRLSWKKRLSRLMNYPGTRYTKQMMETVCYPAMEEVAQELRLRGAYVELKSLPPEEGQQLGHLDLLVHMGEEQNFVYQIWPQQYSVPGFTYRARSGKSTYYRLETFLLEGSQGNDLMDYSKEQVITDILDQYERHLNFIHLHREAPGHSVMFPDA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -232,7 +232,7 @@ "CARNRACE-MONOMER" null ["YaaL", "CaiD"] "MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR" [] ["CCO-CYTOSOL"] 1 [] {} 0 "CCMA-MONOMER" "cytochrome c maturation protein A" ["YejW", "heme trafficking system protein A"] "MGMLEARELLCERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEVLWQGQPLHQVRDSYHQNLLWIGHQPGIKTRLTALENLHFYHRDGDTAQCLEALAQAGLAGFEDIPVNQLSAGQQRRVALARLWLTRATLWILDEPFTAIDVNGVDRLTQRMAQHTEQGGIVILTTHQPLNVAESKIRRISLTQTRAA" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "CCMB-MONOMER" "cytochrome c maturation protein B" ["YejV", "heme trafficking system protein B"] "MMFWRIFRLELRVAFRHSAEIANPLWFFLIVITLFPLSIGPEPQLLARIAPGIIWVAALLSSLLALERLFRDDLQDGSLEQLMLLPLPLPAVVLAKVMAHWMVTGLPLLILSPLVAMLLGMDVYGWQVMALTLLLGTPTLGFLGAPGVALTVGLKRGGVLLSILVLPLTIPLLIFATAAMDAASMHLPVDGYLAILGALLAGTATLSPFATAAALRISIQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"CCMC-MONOMER" "cytochrome c maturation protein C" ["YejU", "YejT", "heme trafficking system protein C"] "MWKTLHQLAIPPRLYQICGWFIPWLAIASVVVLTVGWIWGFGFAPADYQQGNSYRIIYLHVPAAIWSMGIYASMAVAAFIGLVWQMKMANLAVAAMAPIGAVFTFIALVTGSAWGKPMWGTWWVWDARLTSELVLLFLYVGVIALWHAFDDRRLAGRAAGILVLIGVVNLPIIHYSVEWWNTLHQGSTRMQQSIDPAMRSPLRWSIFGFLLLSATLTLMRMRNLILLMEKRRPWVSELILKRGRK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"CCMC-MONOMER" "cytochrome c maturation protein C" ["YejU", "YejT"] "MWKTLHQLAIPPRLYQICGWFIPWLAIASVVVLTVGWIWGFGFAPADYQQGNSYRIIYLHVPAAIWSMGIYASMAVAAFIGLVWQMKMANLAVAAMAPIGAVFTFIALVTGSAWGKPMWGTWWVWDARLTSELVLLFLYVGVIALWHAFDDRRLAGRAAGILVLIGVVNLPIIHYSVEWWNTLHQGSTRMQQSIDPAMRSPLRWSIFGFLLLSATLTLMRMRNLILLMEKRRPWVSELILKRGRK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "CCME-MONOMER" "periplasmic heme chaperone" ["YejS", "cyctochrome c maturation protein E"] "MNIRRKNRLWIACAVLAGLALTIGLVLYALRSNIDLFYTPGEILYGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDLFREGQGVVVQGELEKGNHILAKEVLAKHDENYTPPEVEKAMEANHRRPASVYKDPAS" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"PROTOHEME": 1} 1 "CDPDIGLYPYPHOSPHA-MONOMER" null ["Cdh"] "MKKAGLLFLVMIVIAVVAAGIGYWKLTGEESDTLRKIVLEECLPNQQQNQNPSPCAEVKPNAGYVVLKDLNGPLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVPDRAVSLAINSRTGRTQNHFHIHISCIRPDVRKQLDNNLANISSRWLPLPGGLRGHEYLARRVTESELVQRSPFMMLAEEVPEAREHMGRYGLAMVRQSDNSFVLLATQRNLLTLNRASAEEIQDHQCEILR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "CDPDIGLYSYN-MONOMER" "CDP-diglyceride synthetase" ["Cds", "CdsA"] "MLKYRLISAFVLIPVVIAALFLLPPVGFAIVTLVVCMLAAWEWGQLSGFTTRSQRVWLAVLCGLLLALMLFLLPEYHRNIHQPLVEISLWASLGWWIVALLLVLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAWHYDENHYSGAIWLLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLDVAPVTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFACLLLLVFRTL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -341,8 +341,8 @@ "DLACTDEHYDROGNAD-MONOMER" "D-lactate dehydrogenase" ["HtpH", "HslI", "HslF", "LdhA", "D-lactate dehydrogenase - fermentative"] "MKLAVYSTKQYDKKYLQQVNESFGFELEFFDFLLTEKTAKTANGCEAVCIFVNDDGSRPVLEELKKHGVKYIALRCAGFNNVDLDAAKELGLKVVRVPAYDPEAVAEHAIGMMMTLNRRIHRAYQRTRDANFSLEGLTGFTMYGKTAGVIGTGKIGVAMLRILKGFGMRLLAFDPYPSAAALELGVEYVDLPTLFSESDVISLHCPLTPENYHLLNEAAFEQMKNGVMIVNTSRGALIDSQAAIEALKNQKIGSLGMDVYENERDLFFEDKSNDVIQDDVFRRLSACHNVLFTGHQAFLTAEALTSISQTTLQNLSNLEKGETCPNELV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "DMBPPRIBOSYLTRANS-MONOMER" "nicotinate-nucleotide—dimethylbenzimidazole phosphoribosyltransferase" ["CobT"] "MQILADLLNTIPAIDSTAMSRAQRHIDGLLKPVGSLGKLEVLAIQLAGMPGLNGIPHVGKKAVLVMCADHGVWEEGVAISPKEVTAIQAENMTRGTTGVCVLAEQAGANVHVIDVGIDTAEPIPGLINMRVARGSGNIASAPAMSRRQAEKLLLDVICYTQELAKNGVTLFGVGELGMANTTPAAAIVSTITGRDPEEVVGIGANLPTDKLANKIDVVRRAITLNQPNPQDGVDVLAKVGGFDLVGIAGVMLGAASCGLPVLLDGFLSYAAALAACQMSPAIKPYLIPSHLSAEKGARIALSHLGLEPYLNMEMRLGEGSGAALAMPIIEAACAIYNNMGELAASNIVLPGNTTSDLNS" [] ["CCO-CYTOSOL"] 0 [] {} 1 "DMK-MONOMER" null ["YiiW", "MenA"] "MTEQQISRTQAWLESLRPKTLPLAFAAIIVGTALAWWQGHFDPLVALLALITAGLLQILSNLANDYGDAVKGSDKPDRIGPLRGMQKGVITQQEMKRALIITVVLICLSGLALVAVACHTLADFVGFLILGGLSIIAAITYTVGNRPYGYIGLGDISVLVFFGWLSVMGSWYLQAHTLIPALILPATACGLLATAVLNINNLRDINSDRENGKNTLVVRLGEVNARRYHACLLMGSLVCLALFNLFSLHSLWGWLFLLAAPLLVKQARYVMREMDPVAMRPMLERTVKGALLTNLLFVLGIFLSQWAA" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 -"DMSA-MONOMER" "dimethyl sulfoxide reductase subunit A" ["DmsA", "dimethyl sulfoxide reductase, chain A"] "MKTKIPDAVLAAEVSRRGLVKTTAIGGLAMASSALTLPFSRIAHAVDSAIPTKSDEKVIWSACTVNCGSRCPLRMHVVDGEIKYVETDNTGDDNYDGLHQVRACLRGRSMRRRVYNPDRLKYPMKRVGARGEGKFERISWEEAYDIIATNMQRLIKEYGNESIYLNYGTGTLGGTMTRSWPPGNTLVARLMNCCGGYLNHYGDYSSAQIAEGLNYTYGGWADGNSPSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTDAALVNGLAYVMITENLVDQAFLDKYCVGYDEKTLPASAPKNGHYKAYILGEGPDGVAKTPEWASQITGVPADKIIKLAREIGSTKPAFISQGWGPQRHANGEIATRAISMLAILTGNVGINGGNSGAREGSYSLPFVRMPTLENPIQTSISMFMWTDAIERGPEMTALRDGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEILQDDKKCELIVVIDCHMTSSAKYADILLPDCTASEQMDFALDASCGNMSYVIFNDQVIKPRFECKTIYEMTSELAKRLGVEQQFTEGRTQEEWMRHLYAQSREAIPELPTFEEFRKQGIFKKRDPQGHHVAYKAFREDPQANPLTTPSGKIEIYSQALADIAATWELPEGDVIDPLPIYTPGFESYQDPLNKQYPLQLTGFHYKSRVHSTYGNVDVLKAACRQEMWINPLDAQKRGIHNGDKVRIFNDRGEVHIEAKVTPRMMPGVVALGEGAWYDPDAKRVDKGGCINVLTTQRPSPLAKGNPSHTNLVQVEKV" [] ["CCO-PERI-BAC", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {"CPD-7": 1, "Molybdenum": 1, "CPD-15873": 1} 1 -"DMSB-MONOMER" "dimethyl sulfoxide reductase subunit B" ["DmsB", "dimethyl sulfoxide reductase, chain B"] "MTTQYGFFIDSSRCTGCKTCELACKDYKDLTPEVSFRRIYEYAGGDWQEDNGVWHQNVFAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNETKGHMTKCDGCYDRVAEGKKPICVESCPLRALDFGPIDELRKKHGDLAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPKEV" [] [] 1 [] {"CPD-7": 4} 1 +"DMSA-MONOMER" "dimethyl sulfoxide reductase subunit A" ["DmsA", "dimethyl sulfoxide reductase, chain A"] "MKTKIPDAVLAAEVSRRGLVKTTAIGGLAMASSALTLPFSRIAHAVDSAIPTKSDEKVIWSACTVNCGSRCPLRMHVVDGEIKYVETDNTGDDNYDGLHQVRACLRGRSMRRRVYNPDRLKYPMKRVGARGEGKFERISWEEAYDIIATNMQRLIKEYGNESIYLNYGTGTLGGTMTRSWPPGNTLVARLMNCCGGYLNHYGDYSSAQIAEGLNYTYGGWADGNSPSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTDAALVNGLAYVMITENLVDQAFLDKYCVGYDEKTLPASAPKNGHYKAYILGEGPDGVAKTPEWASQITGVPADKIIKLAREIGSTKPAFISQGWGPQRHANGEIATRAISMLAILTGNVGINGGNSGAREGSYSLPFVRMPTLENPIQTSISMFMWTDAIERGPEMTALRDGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEILQDDKKCELIVVIDCHMTSSAKYADILLPDCTASEQMDFALDASCGNMSYVIFNDQVIKPRFECKTIYEMTSELAKRLGVEQQFTEGRTQEEWMRHLYAQSREAIPELPTFEEFRKQGIFKKRDPQGHHVAYKAFREDPQANPLTTPSGKIEIYSQALADIAATWELPEGDVIDPLPIYTPGFESYQDPLNKQYPLQLTGFHYKSRVHSTYGNVDVLKAACRQEMWINPLDAQKRGIHNGDKVRIFNDRGEVHIEAKVTPRMMPGVVALGEGAWYDPDAKRVDKGGCINVLTTQRPSPLAKGNPSHTNLVQVEKV" ["CCO-PM-BAC-NEG"] ["CCO-PERI-BAC", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {"CPD-7": 1, "Molybdenum": 1, "CPD-15873": 1} 1 +"DMSB-MONOMER" "dimethyl sulfoxide reductase subunit B" ["DmsB", "dimethyl sulfoxide reductase, chain B"] "MTTQYGFFIDSSRCTGCKTCELACKDYKDLTPEVSFRRIYEYAGGDWQEDNGVWHQNVFAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNETKGHMTKCDGCYDRVAEGKKPICVESCPLRALDFGPIDELRKKHGDLAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPKEV" ["CCO-PM-BAC-NEG"] [] 1 [] {"CPD-7": 4} 1 "DMSC-MONOMER" "dimethyl sulfoxide reductase subunit C" ["DmsC", "dimethyl sulfoxide reductase, chain C"] "MGSGWHEWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEAQQRVIACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVGASALSNEIASGSIFFAVGGIGWLLAMLKKLSPALRTLWLIVTMVLGVIFVWMMVRVYNSIDTVPTWYSIWTPMGFFLTMFMGGPLLGYLLLSLAGVDGWAMRLLPAISVLALVVSGVVSVMQGAELATIHSSVQQAAALVPDYGALMSWRIVLLAVALCLWIAPQLKGYQPAVPLLSVSFILLLAGELIGRGVFYGLHMTVGMAVAS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "DPPA-MONOMER" "dipeptide ABC transporter periplasmic binding protein" ["Dpp", "Fpp", "DppA", "Alu"] "MRISLKKSGMLKLGLSLVAMTVAASVQAKTLVYCSEGSPEGFNPQLFTSGTTYDASSVPLYNRLVEFKIGTTEVIPGLAEKWEVSEDGKTYTFHLRKGVKWHDNKEFKPTRELNADDVVFSFDRQKNAQNPYHKVSGGSYEYFEGMGLPELISEVKKVDDNTVQFVLTRPEAPFLADLAMDFASILSKEYADAMMKAGTPEKLDLNPIGTGPFQLQQYQKDSRIRYKAFDGYWGTKPQIDTLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKQDKSINLMEMPGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKDAIIKAVYQGAGVSAKNLIPPTMWGYNDDVQDYTYDPEKAKALLKEAGLEKGFSIDLWAMPVQRPYNPNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWTGDNGDPDNFFATLFSCAASEQGSNYSKWCYKPFEDLIQPARATDDHNKRVELYKQAQVVMHDQAPALIIAHSTVFEPVRKEVKGYVVDPLGKHHFENVSIE" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "DPPB-MONOMER" "dipeptide ABC transporter membrane subunit DppB" ["DppB"] "MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLELGVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRHKK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 @@ -375,7 +375,7 @@ "EG10010-MONOMER" "RhsE protein in rhs element" ["RhsE"] "MSTRLTTLSHTSEGHRVSVHYGYDDKGRLTGERQTVENPETGELLWHHETGHAYNEQGLANRVTPDSLPPVEWLTYGSGYLAGMKLGGTPLLEFTRDRLHRETVRSFGSMAGSNAAYKLTSTYTPAGQLQSQHLNSLVYDRDYGWNDNGDLVRISGPRQTREYGYSATGRLESVRTLAPDLDIRIPYATDPAGNRLPDPELHPDSTLTVWPDNRIAEDAHYVYRHDEYGRLTEKTDRIPAGVIRTDDERTHHYHYDSQHRLVFYTRIQHGEPLVESRYLYDPLGRRMAKRVWRRERDLTGWMSLSRKPEVTWYGWDGDRLTTVQTDTTRIQTVYEPGSFTPLIRVETENGEREKAQRRSLAETLQQEGSENGHGVVFPAELVRLLDRLEEEIRADRVSSESRAWLAQCGLTVEQLARQVEPEYTPARKVHFYHCDHRGLPLALISEDGNTAWRGEYDEWGNQLNEENPHHLHQPYRLPGQQHDEESGLYYNRHRHYDPLQGRYITPDPIGLRGGWNMYQYPLNPIQVIDPMGLDAIENMTSGGLIYAVSGVPGLIAANSITNSAYQFGYDMDAIVGGAHNGAADAMRHCYLMCRMTKTFGSTIADVIGKNHEAAGDRQGQPAKERIMDLKNNTVGIACGDFSAKCSDACIEKYNTGQLFGLDGIKADNPIKAKQGSSDASNY" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10011-MONOMER" "DNA binding and peroxide stress response protein YaaA" ["YaaA"] "MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPPQISTLMRISDKLAGINAARFHDWQPDFTPANARQAILAFKGDVYTGLQAETFSEDDFDFAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENARGKDLYQFWGDIITNKLNEALAAQGDNVVINLASDEYFKSVKPKKLNAEIIKPVFLDEKNGKFKIISFYAKKARGLMSRFIIENRLTKPEQLTGFNSEGYFFDEDSSSNGELVFKRYEQR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10013-MONOMER" "peptidoglycan endopeptidase MepM" ["YebA"] "MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRDATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAIPQDELDDKIAGEAGVHEYVVSTGDTLSSILNQYGIDMGDITQLAAADKELRNLKIGQQLSWTLTADGELQRLTWEVSRRETRTYDRTAANGFKMTSEMQQGEWVNNLLKGTVGGSFVASARNAGLTSAEVSAVIKAMQWQMDFRKLKKGDEFAVLMSREMLDGKREQSQLLGVRLRSEGKDYYAIRAEDGKFYDRNGTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAMPQGTPVLSVGDGEVVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWINQQAVNPLTAKLPRTEGLTGSDRREFLAQAKEIVPQLRFD" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"ZN+2": 1} 0 -"EG10015-MONOMER" "cytoskeleton protein RodZ" ["YfgA", "RodZ", "transmembrane component of cytoskeleton"] "MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELLPGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDRKAQQEEITTMADQSSAELSSNSEQGQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANVDTAATPAPTAATTPDGAAPLPTDQAGVTTPVADPNALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQSPAQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG10015-MONOMER" "cytoskeleton protein RodZ" ["YfgA", "RodZ"] "MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELLPGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDRKAQQEEITTMADQSSAELSSNSEQGQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANVDTAATPAPTAATTPDGAAPLPTDQAGVTTPVADPNALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQSPAQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG10018-MONOMER" "regulator of CsrB and CsrC decay" ["YhdA", "CsrD"] "MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQAVATAIDTHLVSNDFSVLRPQITELMMSADIVRVDLLHGDKQVYTLARNGSYRPVGSSDLFRELSVPLIKHPGMSLRLVYQDPMGNYFHSLMTTAPLTGAIGFIIVMLFLAVRWLQRQLAGQELLETRATRILNGERGSNVLGTIYEWPPRTSSALDTLLREIQNAREQHSRLDTLIRSYAAQDVKTGLNNRLFFDNQLATLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHSQVEEQFFTLTNLLSTFMMRYPGALLARYHRSDFAALLPHRTLKEAESIAGQLIKAVDTLPNNKMLDRDDMIHIGICAWRSGQDTEQVMEHAESATRNAGLQGGNSWAIYDDSLPEKGRGNVRWRTLIEQMLSRGGPRLYQKPAVTREGQVHHRELMCRIFDGNEEVSSAEYMPMVLQFGLSEEYDRLQISRLIPLLRYWPEENLAIQVTVESLIRPRFQRWLRDTLMQCEKSQRKRIIIELAEADVGQHISRLQPVIRLVNALGVRVAVNQAGLTLVSTSWIKELNVELLKLHPGLVRNIEKRTENQLLVQSLVEACSGTSTQVYATGVRSRSEWQTLIQRGVTGGQGDFFASSQPLDTNVKKYSQRYSV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG10021-MONOMER" "P-loop guanosine triphosphatase YjiA" ["YjiA"] "MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGEAEKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADKQNDISSIVVELDYPVDISEVSRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGDEKPHSTMVFIGIQLPEEEIRAAFAGLRK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 4} 0 "EG10037-MONOMER" "DNA oxidative demethylase" ["AidD", "AlkB", "α-ketoglutarate-dependent dioxygenase", "alkyladenine-DNA dioxygenase"] "MLDLFADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE" [] ["CCO-CYTOSOL"] 0 [] {"FE+2": 1} 0 @@ -468,7 +468,7 @@ "EG10315-MONOMER" "type 1 fimbriae D-mannose specific adhesin" ["PilE", "FimH", "type 1 fimbrin minor protein"] "MKRVITLFAVLLMGWSVNAWSFACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPTGGCDVSARDVTVTLPDYPGSVPIPLTVYCAKSQNLGYYLSGTTADAGNSIFTNTASFSPAQGVGVQLTRNGTIIPANNTVSLGAVGTSAVSLGLTANYARTGGQVTAGNVQSIIGVTFVYQ" ["CCO-PILUS"] ["CCO-EXTRACELLULAR", "CCO-PILUS"] 0 [] {} 1 "EG10320-MONOMER" "DNA-binding transcriptional dual regulator FlhD" ["FlbB", "FlhD"] "MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDVNQPEEALRKKRA" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10321-MONOMER" "flagellar filament structural protein" ["Hag", "FlaF", "FliC", "flagellin"] "MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGALSEINNNLQRVRELTVQATTGTNSESDLSSIQDEIKSRLDEIDRVSGQTQFNGVNVLAKNGSMKIQVGANDNQTITIDLKQIDAKTLGLDGFSVKNNDTVTTSAPVTAFGATTTNNIKLTGITLSTEAATDTGGTNPASIEGVYTDNGNDYYAKITGGDNDGKYYAVTVANDGTVTMATGATANATVTDANTTKATTITSGGTPVQIDNTAGSATANLGAVSLVKLQDSKGNDTDTYALKDTNGNLYAADVNETTGAVSVKTITYTDSSGAASSPTAVKLGGDDGKTEVVDIDGKTYDSADLNGGNLQTGLTAGGEALTAVANGKTTDPLKALDDAIASVDKFRSSLGAVQNRLDSAVTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLLQG" [] ["CCO-EXTRACELLULAR", "CCO-CELL-PROJECTION"] 1 [] {} 1 -"EG10322-MONOMER" "flagellar protein FliL" ["FliL"] "MTDYAISKKSKRSLWIPILVFITLAACASAGYSYWHSHQVAADDKAQQRVVPSPVFYALDTFTVNLGDADRVLYIGITLRLKDEATRSRLSEYLPEVRSRLLLLFSRQDAAVLATEEGKKNLIAEIKTTLSTPLVAGQPKQDVTDVLYTAFILR" [] ["CCO-CELL-PROJECTION", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"EG10322-MONOMER" "flagellar protein FliL" ["FliL"] "MTDYAISKKSKRSLWIPILVFITLAACASAGYSYWHSHQVAADDKAQQRVVPSPVFYALDTFTVNLGDADRVLYIGITLRLKDEATRSRLSEYLPEVRSRLLLLFSRQDAAVLATEEGKKNLIAEIKTTLSTPLVAGQPKQDVTDVLYTAFILR" [] ["CCO-CELL-PROJECTION", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 "EG10329-MONOMER" "DNA-formamidopyrimidine glycosylase" ["Fpg", "MutM", "8-oxoguanine DNA glycosylase"] "MPELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEIYRLSDQPVLSVQRRAKYLLLELPEGWIIIHLGMSGSLRILPEELPPEKHDHVDLVMSNGKVLRYTDPRRFGAWLWTKELEGHNVLTHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRQCQK" [] ["CCO-CYTOSOL"] 1 [] {} 0 "EG10335-MONOMER" "ribosome-recycling factor" ["Rrf", "Frr", "ribosome release factor", "RF4", "release factor 4", "RR factor"] "MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAELMQF" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10339-MONOMER" "cell division protein FtsA" ["DivA", "FtsA", "essential cell division protein FtsA"] "MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSRGMDKGGVNDLESVVKCVQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEEEVTQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHLITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYSVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRPPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEKLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKESHLNGEAEVEKRVTASVGSWIKRLNSWLRKEF" ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -526,7 +526,7 @@ "EG10490-MONOMER" "DNA-binding transcriptional dual regulator ArgP" ["ArgP", "IciA"] "MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENMFGQPLLVRTVPPRPTEQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNADSLATWLLPALAPVLADSPIRLNLQVEDETRTQERLRRGEVVGAVSIQHQALPSCLVDKLGALDYLFVSSKPFAEKYFPNGVTRSALLKAPVVAFDHLDDMHQAFLQQNFDLPPGSVPCHIVNSSEAFVQLARQGTTCCMIPHLQIEKELASGELIDLTPGLFQRRMLYWHRFAPESRMMRKVTDALLDYGHKVLRQD" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10504-MONOMER" "translation initiation factor IF-1" ["InfA", "IF1", "protein chain initiation factor IF-1"] "MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "EG10505-MONOMER" "translation initiation factor IF-2" ["SsyG", "InfB", "IF-2", "protein chain initiation factor IF2"] "MTDVTIKTLAAERQTSVERLVQQFADAGIRKSADDSVSAQEKQTLIDHLNQKNSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERLAAEEQAQREAEEQARREAEESAKREAQQKAEREAAEQAKREAAEQAKREAAEKDKVSNQQDDMTKNAQAEKARREQEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTDNAEPTEDSSDYHVTTSQHARQAEDESDREVEGGRGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRTGDVIEVFEIIEIQRTIA" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG10506-MONOMER" "translation initiation factor IF-3" ["Fit", "SrjA", "InfC", "IF3", "protein chain initiation factor IF-3"] "MKGGKRVQTARPNRINGEIRAQEVRLTGLEGEQLGIVSLREALEKAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKSSKEQKKKQKVIQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVESFPTKIEGRQMIMVLAPKKKQ" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 +"EG10506-MONOMER" "translation initiation factor IF-3" ["Fit", "SrjA", "InfC", "IF3", "protein chain initiation factor IF-3"] "MKGGKRVQTARPNRINGEIRAQEVRLTGLEGEQLGIVSLREALEKAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKSSKEQKKKQKVIQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVESFPTKIEGRQMIMVLAPKKKQ" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-MEMBRANE", "CCO-CYTOSOL"] 1 [] {} 0 "EG10507-MONOMER" "DLP12 prophage; putative integrase" ["Int", "IntD"] "MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIMEDIKKA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10513-MONOMER" "K+ transporting P-type ATPase subunit KdpA" ["KdpA", "Kac"] "MAAQGFLLIATFLLVLMVLARPLGSGLARLINDIPLPGTTGVERVLFRALGVSDREMNWKQYLCAILGLNMLGLAVLFFMLLGQHYLPLNPQQLPGLSWDLALNTAVSFVTNTNWQSYSGETTLSYFSQMAGLTVQNFLSAASGIAVIFALIRAFTRQSMSTLGNAWVDLLRITLWVLVPVALLIALFFIQQGALQNFLPYQAVNTVEGAQQLLPMGPVASQEAIKMLGTNGGGFFNANSSHPFENPTALTNFVQMLAIFLIPTALCFAFGEVMGDRRQGRMLLWAMSVIFVICVGVVMWAEVQGNPHLLALGTDSSINMEGKESRFGVLVSSLFAVVTTAASCGAVIAMHDSFTALGGMVPMWLMQIGEVVFGGVGSGLYGMMLFVLLAVFIAGLMIGRTPEYLGKKIDVREMKLTALAILVTPTLVLMGAALAMMTDAGRSAMLNPGPHGFSEVLYAVSSAANNNGSAFAGLSANSPFWNCLLAFCMFVGRFGVIIPVMAIAGSLVSKKSQAASSGTLPTHGPLFVGLLIGTVLLVGALTFIPALALGPVAEYLS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG10515-MONOMER" "K+ transporting P-type ATPase subunit KdpC" ["KdpC", "Kac"] "MSGLRPALSTFIFLLLITGGVYPLLTTVLGQWWFPWQANGSLIREGDTVRGSALIGQNFTGNGYFHGRPSATAEMPYNPQASGGSNLAVSNPELDKLIAARVAALRAANPDASASVPVELVTASASGLDNNITPQAAAWQIPRVAKARNLSVEQLTQLIAKYSQQPLVKYIGQPVVNIVELNLALDKLDE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 @@ -613,7 +613,7 @@ "EG10739-MONOMER" "lysophospholipase L2" ["PldB"] "MFQQQKDWETRENAFAAFTMGPLTDFWRQRDEAEFTGVDDIPVRFVRFRAQHHDRVVVICPGRIESYVKYAELAYDLFHLGFDVLIIDHRGQGRSGRLLADPHLGHVNRFNDYVDDLAAFWQQEVQPGPWRKRYILAHSMGGAISTLFLQRHPGVCDAIALTAPMFGIVIRMPSFMARQILNWAEAHPRFRDGYAIGTGRWRALPFAINVLTHSRQRYRRNLRFYADDPTIRVGGPTYHWVRESILAGEQVLAGAGDDATPTLLLQAEEERVVDNRMHDRFCELRTAAGHPVEGGRPLVIKGAYHEILFEKDAMRSVALHAIVDFFNRHNSPSGNRSTEV" ["CCO-MEMBRANE"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG10741-MONOMER" "metalloprotease subunit TldE" ["Mcb", "TldE", "PmbA", "protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD"] "MALAMKVISQVEAQRKILEEAVSTALELASGKSDGAEVAVSKTTGISVSTRYGEVENVEFNSDGALGITVYHQNRKGSASSTDLSPQAIARTVQAALDIARYTSPDPCAGVADKELLAFDAPDLDLFHPAEVSPDEAIELAARAEQAALQADKRITNTEGGSFNSHYGVKVFGNSHGMLQGYCSTRHSLSSCVIAEENGDMERDYAYTIGRAMSDLQTPEWVGADCARRTLSRLSPRKLSTMKAPVIFANEVATGLFGHLVGAIAGGSVYRKSTFLLDSLGKQILPDWLTIEEHPHLLKGLASTPFDSEGVRTERRDIIKDGILTQWLLTSYSARKLGLKSTGHAGGIHNWRIAGQGLSFEQMLKEMGTGLVVTELMGQGVSAITGDYSRGAAGFWVENGEIQYPVSEITIAGNLKDMWRNIVTVGNDIETRSNIQCGSVLLPEMKIAGQ" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10743-MONOMER" "polynucleotide phosphorylase" ["Bfl", "Pnp"] "MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQGE" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 -"EG10746-MONOMER" "DNA polymerase I" ["ResA", "PolA", "DNA polymerase I, 5' --> 3' polymerase, 5' --> 3' and 3' --> 5' exonuclease"] "MVQIPQNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNKEVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAKGAKPAAKPQETSVADEAPEVTATVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDVPLLVEVGSGENWDQAH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 +"EG10746-MONOMER" "DNA polymerase I" ["ResA", "PolA", "Pol I", "DNA polymerase I, 5' --> 3' polymerase, 5' --> 3' and 3' --> 5' exonuclease"] "MVQIPQNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNKEVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAKGAKPAAKPQETSVADEAPEVTATVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDVPLLVEVGSGENWDQAH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10747-MONOMER" "DNA polymerase II" ["DinA", "PolB"] "MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF" [] ["CCO-CYTOSOL"] 1 [] {} 0 "EG10748-MONOMER" "peptidoglycan glycosyltransferase / peptidoglycan DD-transpeptidase MrcA" ["PonA", "MrcA", "PBP1a", "penicillin binding protein 1a"] "MKFVKYFLILAVCCILLGAGSIYGLYRYIEPQLPDVATLKDVRLQIPMQIYSADGELIAQYGEKRRIPVTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIFRAASVALFSGHASQGASTITQQLARNFFLSPERTLMRKIKEVFLAIRIEQLLTKDEILELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTLNEMAVIAGLPKAPSTFNPLYSMDRAVARRNVVLSRMLDEGYITQQQFDQTRTEAINANYHAPEIAFSAPYLSEMVRQEMYNRYGESAYEDGYRIYTTITRKVQQAAQQAVRNNVLDYDMRHGYRGPANVLWKVGESAWDNNKITDTLKALPTYGPLLPAAVTSANPQQATAMLADGSTVALSMEGVRWARPYRSDTQQGPTPRKVTDVLQTGQQIWVRQVGDAWWLAQVPEVNSALVSINPQNGAVMALVGGFDFNQSKFNRATQALRQVGSNIKPFLYTAAMDKGLTLASMLNDVPISRWDASAGSDWQPKNSPPQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVHTESLALGSASFTPMQVARGYAVMANGGFLVDPWFISKIENDQGGVIFEAKPKVACPECDIPVIYGDTQKSNVLENNDVEDVAISREQQNVSVPMPQLEQANQALVAKTGAQEYAPHVINTPLAFLIKSALNTNIFGEPGWQGTGWRAGRDLQRRDIGGKTGTTNSSKDAWFSGYGPGVVTSVWIGFDDHRRNLGHTTASGAIKDQISGYEGGAKSAQPAWDAYMKAVLEGVPEQPLTPPPGIVTVNIDRSTGQLANGGNSREEYFIEGTQPTQQAVHEVGTTIIDNGEAQELF" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG10757-MONOMER" "peptidyl-prolyl cis-trans isomerase A" ["Rot", "RotA", "PpiA", "rotamase A"] "MFKSTLAAMAAVFALSALSPAAMAAKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 @@ -630,7 +630,7 @@ "EG10779-MONOMER" "phage shock protein D" ["PspD"] "MNTRWQQAGQKVKPGFKLAGKLVLLTALRYGPAGVAGWAIKSVARRPLKMLLAVALEPLLSRAANKLAQRYKR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG10780-MONOMER" "thiosulfate sulfurtransferase PspE" ["PspE"] "MFKKGLLALALVFSLPVFAAEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLKDIAMPKVKG" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 "EG10785-MONOMER" "peptidyl-tRNA hydrolase" ["Rap", "Pth"] "MTIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKATNRLHAFKAQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG10786-MONOMER" "protease 3" ["PtrA", "Ptr", "Pitrilysin", "Protease pi", "protease III"] "MPRSTWFKALLLLVALWAPLSQAETGWQPIQETIRKSDKDNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMMTPQNARIWYISPKEPHNKTAYFVDAPYQVDKISAQTFADWQKKAADIALSLPELNPYIPDDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNANNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVEPQGMAILSQISGSQNGKAEYVHPEGWKVWENVSALQQTMPLMSEKNE" ["CCO-CYTOSOL", "CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {"ZN+2": 1} 0 +"EG10786-MONOMER" "protease 3" ["PtrA", "Ptr", "Pitrilysin", "Protease pi", "protease III"] "MPRSTWFKALLLLVALWAPLSQAETGWQPIQETIRKSDKDNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMMTPQNARIWYISPKEPHNKTAYFVDAPYQVDKISAQTFADWQKKAADIALSLPELNPYIPDDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNANNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVEPQGMAILSQISGSQNGKAEYVHPEGWKVWENVSALQQTMPLMSEKNE" ["CCO-CYTOSOL", "CCO-PERI-BAC"] ["CCO-CYTOSOL", "CCO-PERI-BAC"] 0 [] {"ZN+2": 1} 0 "EG10812-MONOMER" null ["TsaA", "QueA"] "MRVTDFSFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFTDLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPKPGAELLLGDDESINATMTARHGALFEVEFNDERSVLDILNSIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPTAGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVDTIEDHIMHSEYAEVPQDVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPFFDDTQIFIYPGFQYKVVDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRFFSYGDAMFITYNPQAINERVGE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10813-MONOMER" "Rac prophage; protein RacC" ["RacC", "SbcA"] "MITNYEATVVTTDDIVHEVNLEGKRIGYVIKTENKETPFTVVDIDGPSGNVKTLDEGVKKMCLVHIGKNLPAEKKAEFLATLIAMKLKGEI" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10817-MONOMER" "D-ribose pyranase" ["RbsP", "RbsD"] "MKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMALTQGVPSFMQVLGVVTNEMQVEAAIIAEEIKHHNPQLHETLLTHLEQLQKHQGNTIEIRYTTHEQFKQQTAESQAVIRSGECSPYANIILCAGVTF" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -663,7 +663,7 @@ "EG10853-MONOMER" "ribosomal-protein-L12-serine N-acetyltransferase" ["RimL"] "MTETIKVSESLELHAVAENHVKPLYQLICKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVISFNRIEPLNKTAEIGYWLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPQSNQVALRNGFILEGCLKQAEFLNDAYDDVNLYARIIDSQ" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10854-MONOMER" "rare lipoprotein RlpA" ["RlpA"] "MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEISGADPRFEPLNATANQDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEAFDPTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSNNTKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPAMVTPQAVSQSASGNFMVQVGAVSDQARAQQYQQQLGQKFGVPGRVTQNGAVWRIQLGPFASKAEASTLQQRLQTEAQLQSFITTAQ" ["CCO-OUTER-MEM"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 "EG10855-MONOMER" "lipopolysaccharide assembly protein LptE" ["LptE", "RlpB"] "MRYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSIAKDTASVFRNGQTAEYQMIMTVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLPSIRAADIRSDEEQTSTTTDTPATPARVSTTLGN" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-OUTER-MEM"] 0 [] {} 1 -"EG10856-MONOMER" "RNase I" ["RnsA", "Rna", "ribonuclease I"] "MKAFWRNAALLAVSLLPFSSANALALQAKQYGDFDRYVLALSWQTGFCQSQHDRNRNERDECRLQTETTNKADFLTVHGLWPGLPKSVAARGVDERRWMRFGCATRPIPNLPEARASRMCSSPETGLSLETAAKLSEVMPGAGGRSCLERYEYAKHGACFGFDPDAYFGTMVRLNQEIKESEAGKFLADNYGKTVSRRDFDAAFAKSWGKENVKAVKLTCQGNPAYLTEIQISIKADAINAPLSANSFLPQPHPGNCGKTFVIDKAGY" ["CCO-PERI-BAC"] ["CCO-PERI-BAC", "CCO-CYTOSOL"] 0 [] {} 0 +"EG10856-MONOMER" "RNase I" ["RnsA", "Rna", "ribonuclease I"] "MKAFWRNAALLAVSLLPFSSANALALQAKQYGDFDRYVLALSWQTGFCQSQHDRNRNERDECRLQTETTNKADFLTVHGLWPGLPKSVAARGVDERRWMRFGCATRPIPNLPEARASRMCSSPETGLSLETAAKLSEVMPGAGGRSCLERYEYAKHGACFGFDPDAYFGTMVRLNQEIKESEAGKFLADNYGKTVSRRDFDAAFAKSWGKENVKAVKLTCQGNPAYLTEIQISIKADAINAPLSANSFLPQPHPGNCGKTFVIDKAGY" ["CCO-PERI-BAC"] ["CCO-EXTRACELLULAR", "CCO-PERI-BAC", "CCO-CYTOSOL"] 0 [] {} 0 "EG10857-MONOMER" "RNase III" ["Rnc"] "MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKKLELE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "EG10858-MONOMER" "RNase D" ["Rnd", "ribonuclease D"] "MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALHNLLQEYPQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10859-MONOMER" "ribonuclease E" ["SmbB", "Ams", "Rne"] "MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1, "ZN+2": 1} 1 @@ -674,7 +674,7 @@ "EG10864-MONOMER" "50S ribosomal subunit protein L1" ["Rpy", "RplA"] "MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGLSASVN" ["CCO-CYTOSOL"] ["CCO-RIBOSOME", "CCO-CYTOSOL"] 1 [] {} 1 "EG10865-MONOMER" "50S ribosomal subunit protein L2" ["RplB"] "MAVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRNNNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQSGVDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRSK" ["CCO-CYTOSOL"] ["CCO-RIBOSOME", "CCO-CYTOSOL"] 1 [] {} 1 "EG10866-MONOMER" "50S ribosomal subunit protein L3" ["RplC"] "MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAVKA" ["CCO-CYTOSOL"] ["CCO-RIBOSOME", "CCO-CYTOSOL"] 0 [] {} 1 -"EG10867-MONOMER" "50S ribosomal subunit protein L4" ["EryA", "RplD"] "MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITGELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA" ["CCO-RIBOSOME", "CCO-CYTOSOL"] ["CCO-RIBOSOME", "CCO-CYTOSOL"] 0 [] {} 1 +"EG10867-MONOMER" "50S ribosomal subunit protein L4" ["EryA", "RplD"] "MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITGELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA" ["CCO-CYTOSOL"] ["CCO-RIBOSOME", "CCO-CYTOSOL"] 0 [] {} 1 "EG10868-MONOMER" "50S ribosomal subunit protein L5" ["RplE"] "MAKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEEGRALLAAFDFPFRK" ["CCO-CYTOSOL"] ["CCO-RIBOSOME", "CCO-CYTOSOL"] 1 [] {} 1 "EG10869-MONOMER" "50S ribosomal subunit protein L6" ["RplF"] "MSRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK" ["CCO-CYTOSOL"] ["CCO-RIBOSOME", "CCO-CYTOSOL"] 1 [] {} 1 "EG10870-MONOMER" "50S ribosomal subunit protein L9" ["RplI"] "MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAEVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEVFAKVIVNVVAE" ["CCO-CYTOSOL"] ["CCO-RIBOSOME", "CCO-CYTOSOL"] 0 [] {} 1 @@ -689,7 +689,7 @@ "EG10879-MONOMER" "50S ribosomal subunit protein L18" ["RplR"] "MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF" ["CCO-CYTOSOL"] ["CCO-RIBOSOME", "CCO-CYTOSOL"] 0 [] {} 1 "EG10880-MONOMER" "50S ribosomal subunit protein L19" ["RplS"] "MSNIIKQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERLN" ["CCO-CYTOSOL"] ["CCO-RIBOSOME", "CCO-CYTOSOL"] 1 [] {} 1 "EG10881-MONOMER" "50S ribosomal subunit protein L20" ["PdzA", "RplT"] "MARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA" ["CCO-CYTOSOL"] ["CCO-RIBOSOME", "CCO-CYTOSOL"] 1 [] {} 1 -"EG10882-MONOMER" "50S ribosomal subunit protein L22" ["EryB", "RplV"] "METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR" ["CCO-RIBOSOME", "CCO-CYTOSOL"] ["CCO-RIBOSOME", "CCO-CYTOSOL"] 0 [] {} 1 +"EG10882-MONOMER" "50S ribosomal subunit protein L22" ["EryB", "RplV"] "METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR" ["CCO-CYTOSOL"] ["CCO-RIBOSOME", "CCO-CYTOSOL"] 0 [] {} 1 "EG10883-MONOMER" "50S ribosomal subunit protein L23" ["RplW"] "MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE" ["CCO-CYTOSOL"] ["CCO-RIBOSOME", "CCO-CYTOSOL"] 0 [] {} 1 "EG10884-MONOMER" "50S ribosomal subunit protein L24" ["RplX"] "MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK" ["CCO-CYTOSOL"] ["CCO-RIBOSOME", "CCO-CYTOSOL"] 1 [] {} 1 "EG10885-MONOMER" "50S ribosomal subunit protein L25" ["RplY"] "MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA" ["CCO-CYTOSOL"] ["CCO-RIBOSOME", "CCO-CYTOSOL"] 0 [] {} 1 @@ -738,7 +738,7 @@ "EG10952-MONOMER" "outer membrane protein assembly factor BamE" ["SmqA", "small membrane protein A", "BamE", "SmpA"] "MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN" ["CCO-MEMBRANE"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 "EG10955-MONOMER" "antitoxin PrlF" ["PrlF", "SohA"] "MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNNPQKTRPFNIQQGKKLVAGMDVNIDDEIGDDE" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10956-MONOMER" "S49 peptidase family protein" ["SohB"] "MELLSEYGLFLAKIVTVVLAIAAIAAIIVNVAQRNKRQRGELRVNNLSEQYKEMKEELAAALMDSHQQKQWHKAQKKKHKQEAKAAKAKAKLGEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMRPSLDIEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLMEGREVVNVRYMQRKRLIDRFTGSAAESADRLLLRWWQRGQKPLM" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG10967-MONOMER" null ["TrmH", "SpoU"] "MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEADADWWATMQAAG" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"EG10967-MONOMER" null ["TrmH", "SpoU"] "MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEADADWWATMQAAG" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10968-MONOMER" "protease IV, a signal peptide peptidase" ["SppA"] "MRTLWRFIAGFFKWTWRLLNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFSKLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDKNYRAISYYDYALKTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKVKQWHLEYYVDEPTFFDKVMDNMSGSVRAMLPDAFQAMLPAPLASVASTVKSESDKLAAFNDPQNRYAFCLTCANMR" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG10973-MONOMER" "D-arabinose 5-phosphate isomerase GutQ" ["SrlQ", "GutQ"] "MSEALLNAGRQTLMLELQEASRLPERLGDDFVRAANIILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSSTVNTLMMGDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTVGGTTLQSQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQAGII" [] ["CCO-CYTOSOL"] 1 [] {"ZN+2": 1} 1 "EG10975-MONOMER" "ATP-dependent RNA helicase SrmB" ["RhlA", "RbaB", "SrmB", "DEAD-box RNA helicase"] "MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -752,7 +752,7 @@ "EG10996-MONOMER" "tRNA-guanine transglycosylase" ["Tgt"] "MKFELDTTDGRARRGRLVFDRGVVETPCFMPVGTYGTVKGMTPEEVEATGAQIILGNTFHLWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLGDIRKITEQGVHFRNPINGDPIFLDPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSMEMSLRWAKRSRERFDSLGNKNALFGIIQGSVYEDLRDISVKGLVDIGFDGYAVGGLAVGEPKADMHRILEHVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGHLFVTDGVVKIRNAKYKSDTGPLDPECDCYTCRNYSRAYLHHLDRCNEILGARLNTIHNLRYYQRLMAGLRKAIEEGKLESFVTDFYQRQGREVPPLNVD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 "EG10997-MONOMER" "5-carboxymethylaminomethyluridine-tRNA synthase GTPase subunit" ["MnmE", "TrmE", "ThdF", "GTPase, involved in modification of U34 in tRNA", "5-carboxymethylaminomethyluridine-tRNA synthase subunit MnmE"] "MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPKPRYADYLPFKDADGSVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK" ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1, "K+": 1} 1 "EG11003-MONOMER" "trigger factor" ["Tig", "chaperone protein Tig"] "MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAIIKEKINPAGAPTYVPGEYKLGEDFTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDADVDGMLDTLRKQQATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMERELKSAIRNRVKSQAIEGLVKANDIDVPAALIDSEIDVLRRQAAQRFGGNEKQALELPRELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKGLIEEMASAYEDPKEVIEFYSKNKELMDNMRNVALEEQAVEAVLAKAKVTEKETTFNELMNQQA" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11004-MONOMER" "oligopeptidase B" ["Tlp", "PtrB", "protease II", "OpdB"] "MLPKAARIPHAMTLHGDTRIDNYYWLRDDTRSQPEVLDYLQQENSYGHRVMASQQALQDRILKEIIDRIPQREVSAPYIKNGYRYRHIYEPGCEYAIYQRQSAFSEEWDEWETLLDANKRAAHSEFYSMGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWIFYYVRKHPVTLLPYQVWRHAIGTPASQDKLIYEEKDDTYYVSLHKTTSKHYVVIHLASATTSEVRLLDAEMADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRMRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETARLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFYAANYRSEHLWIVARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYAMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLVALAQGTLPATPAD" ["CCO-CYTOSOL"] [] 0 [] {} 0 +"EG11004-MONOMER" "oligopeptidase B" ["Tlp", "PtrB", "protease II", "OpdB"] "MLPKAARIPHAMTLHGDTRIDNYYWLRDDTRSQPEVLDYLQQENSYGHRVMASQQALQDRILKEIIDRIPQREVSAPYIKNGYRYRHIYEPGCEYAIYQRQSAFSEEWDEWETLLDANKRAAHSEFYSMGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWIFYYVRKHPVTLLPYQVWRHAIGTPASQDKLIYEEKDDTYYVSLHKTTSKHYVVIHLASATTSEVRLLDAEMADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRMRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETARLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFYAANYRSEHLWIVARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYAMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLVALAQGTLPATPAD" ["CCO-CYTOSOL"] ["CCO-CYTOSKELETON"] 0 [] {} 0 "EG11007-MONOMER" "Tol-Pal system protein TolA" ["Lky", "Cim", "ExcC", "TolA"] "MSKATEQNDKLKRAIIISAVLHVILFAALIWSSFDENIEASAGGGGGSSIDAVMVDSGAVVEQYKRMQSQESSAKRSDEQRKMKEQQAAEELREKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAELKQKQAEEAAAKAAADAKAKAEADAKAAEEAAKKAAADAKKKAEAEAAKAAAEAQKKAEAAAAALKKKAEAAEAAAAEARKKAATEAAEKAKAEAEKKAAAEKAAADKKAAAEKAAADKKAAEKAAAEKAAADKKAAAEKAAADKKAAAAKAAAEKAAAAKAAAEADDIFGELSSGKNAPKTGGGAKGNNASPAGSGNTKNNGASGADINNYAGQIKSAIESKFYDASSYAGKTCTLRIKLAPDGMLLDIKPEGGDPALCQAALAAAKLAKIPKPPSQAVYEVFKNAPLDFKP" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG11008-MONOMER" "Tol-Pal system periplasmic protein TolB" ["Lky", "LkyA"] "MKQALRVAFGFLILWASVLHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "EG11009-MONOMER" "outer membrane channel TolC" ["WeeA", "Toc", "RefI", "MukA", "MtcB", "TolC"] "MKKLLPILIGLSLSGFSSLSQAENLMQVYQQARLSNPELRKSAADRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGINSNATSASLQLTQSIFDMSKWRALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYDTVLANEVTARNNLDNAVEQLRQITGNYYPELAALNVENFKTDKPQPVNALLKEAEKRNLSLLQARLSQDLAREQIRQAQDGHLPTLDLTASTGISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGMVNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIVDVLDATTTLYNAKQELANARYNYLINQLNIKSALGTLNEQDLLALNNALSKPVSTNPENVAPQTPEQNAIADGYAPDSPAPVVQQTSARTTTSNGHNPFRN" ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 @@ -870,9 +870,9 @@ "EG11186-MONOMER" "PF05360 family inner membrane protein YiaA" ["YiaA"] "MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDAGINPPKETQVTQEEYSE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11187-MONOMER" "putative lyase containing HEAT-repeat" ["YibA"] "MSNTYQKRKASKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKLKRS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11188-MONOMER" "protein HtrL" ["YibB", "HtrL"] "MKSSTTIITAYFDIGRGDWTANKGFREKLARSVDVYFSYFERLAALENEMIIFTSPDLKPRVEAIRNGKPTTVIVIDIKKKFRYIRSRIEKIQKDESFTNRLEPRQLKNPEYWSPEYVLVCNLKAYFVNKAINMGLVKTPLVAWIDFGYCHKPNVTRGLKIWDFPFDESKMHLFTIKKGLTVTSQQQVFDFMIGNHVYIIGGAIVGSQHKWKEFYKLVLESQKITLNNNIVDDDQGIFVMCYYKRPDLFNLNYLGRGKWFDLFRCFRSNTLGAKMQALRIFLSRK" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11189-MONOMER" "ADP-heptose:LPS heptosyltransferase 1" ["YibC", "WaaC", "RfaC", "ADP-heptose:LPS heptosyltransferase I"] "MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWHAAVERVIPVAIRRWRKAWFSAPIKAERKAFREALQAENYDAVIDAQGLVKSAALVTRLAHGVKHGMDWQTAREPLASLFYNRKHHIAKQQHAVERTRELFAKSLGYSKPQTQGDYAIAQHFLTNLPTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPRENLINLNSQAVLEKLSSL" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"EG11189-MONOMER" "ADP-heptose:LPS heptosyltransferase 1" ["YibC", "WaaC", "RfaC", "ADP-heptose:LPS heptosyltransferase I"] "MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWHAAVERVIPVAIRRWRKAWFSAPIKAERKAFREALQAENYDAVIDAQGLVKSAALVTRLAHGVKHGMDWQTAREPLASLFYNRKHHIAKQQHAVERTRELFAKSLGYSKPQTQGDYAIAQHFLTNLPTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPRENLINLNSQAVLEKLSSL" [] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11191-MONOMER" "nucleoid occlusion factor SlmA" ["YicB", "Ttk", "SlmA"] "MAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFGERNPGLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVLREKRMREGEGYTTDETLLASQILAFCEGMLSRFVRSEFKYRPTDDFDARWPLIAAQLQ" ["CCO-BAC-NUCLEOID"] ["CCO-CYTOSOL", "CCO-BAC-NUCLEOID"] 0 [] {} 1 -"EG11192-MONOMER" "putative RNase adaptor protein YicC" ["YicC", "UPF0701 family protein YicC"] "MIRSMTAYARREIKGEWGSATWEMRSVNQRYLETYFRLPEQFRSLEPVVRERIRSRLTRGKVECTLRYEPDVSAQGELILNEKLAKQLVTAANWVKMQSDEGEINPVDILRWPGVMAAQEQDLDAIAAEILAALDGTLDDFIVARETEGQALKALIEQRLEGVTAEVVKVRSHMPEILQWQRERLVAKLEDAQVQLENNRLEQELVLLAQRIDVAEELDRLEAHVKETYNILKKKEAVGRRLDFMMQEFNRESNTLASKSINAEVTNSAIELKVLIEQMREQIQNIE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 +"EG11192-MONOMER" "putative RNase adaptor protein YicC" ["YicC", "UPF0701 family protein YicC"] "MIRSMTAYARREIKGEWGSATWEMRSVNQRYLETYFRLPEQFRSLEPVVRERIRSRLTRGKVECTLRYEPDVSAQGELILNEKLAKQLVTAANWVKMQSDEGEINPVDILRWPGVMAAQEQDLDAIAAEILAALDGTLDDFIVARETEGQALKALIEQRLEGVTAEVVKVRSHMPEILQWQRERLVAKLEDAQVQLENNRLEQELVLLAQRIDVAEELDRLEAHVKETYNILKKKEAVGRRLDFMMQEFNRESNTLASKSINAEVTNSAIELKVLIEQMREQIQNIE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11193-MONOMER" "DNA damage-inducible protein D" ["YicD", "PcsA", "DinD"] "MNEHHQPFEEIKLINANGAEQWSARQLGKLLGYSEYRHFIPVLTRAKEACENSGHTIDDHFEEILDMVKIGSNAKRALKDIVLSRYACYLVVQNGDPAKPVIAAGQTYFAIQTRRQELADDEAFKQLREDEKRLFLRNELKEHNKQLVEAAQQAGVATATDFAIFQNHGYQGLYGGLDQKAIHQRKGLKKNQKILDHMGSTELAANLFRATQTEEKLKRDGVNSKQQANTTHFDVGRKVRQTIQELGGTMPEELPTPQVSIKQLENSVKITEKK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11195-MONOMER" "sugar phosphatase YidA" ["YidA", "HAD13"] "MAIKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLEKLSREVGSHFHALDRTTLYTANRDISYYTVHESFVATIPLVFCEAEKMDPNTQFLKVMMIDEPAILDQAIARIPQEVKEKYTVLKSAPYFLEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVAMDNAIPSVKEVANFVTKSNLEDGVAFAIEKYVLN" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "EG11196-MONOMER" "DUF937 domain-containing protein YidB" ["YidB"] "MGLFDEVVGAFLKGDAGKYQAILSWVEEQGGIQVLLEKLQSGGLGAILSTWLSNQQGNQSVSGEQLESALGTNAVSDLGQKLGVDTSTASSLLAEQLPKIIDALSPQGEVSPQANNDLLSAGMELLKGKLFR" [] [] 0 [] {} 0 @@ -882,7 +882,7 @@ "EG11203-MONOMER" "GTP-binding protein YihA" ["EngB", "YihA", "cell division protein; putative checkpoint GTPase"] "MTNLNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQPVEETQDGE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "EG11206-MONOMER" "stress response protein" ["YjaA"] "MSVLYIQIRRNQITVRDLESKREVSGDAAFSNQRLLIANFFVAEKVLQDLVLQLHPRSTWHSFLPAKRMDIVVSALEMNEGGLSQVEERILHEVVAGATLMKYRQFHIHAQSAVLSDSAVMAMLKQK" [] ["CCO-MEMBRANE"] 0 [] {} 0 "EG11207-MONOMER" "peptidyl-lysine N-acetyltransferase YjaB" ["YjaB"] "MVISIRRSRHEEGEELVAIWCRSVDATHDFLSAEYRTELEDLVRSFLPEAPLWVAVNERDQPVGFMLLSGQHMDALFIDPDVRGCGVGRVLVEHALSMAPELTTNVNEQNEQAVGFYKKVGFKVTGRSEVDDLGKPYPLLNLAYVGA" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11208-MONOMER" "regulator of acetyl CoA synthetase" ["ArpA", "YjaC", "Arp"] "MITRIPRSSFSANINNTAQTNEHQTLSELFYKELEDKFSGKELATPLLKSFSENCRQNGRHIFSNKDFVIKFSTSVLQADKKEITIINKNENTTLTQTIAPIFEKYLMEILPQRSDTLDKQELNLKSDRKEKEFPRIKLNGQCYFPGRPQNRIVCRHIAAQYINDIYQNVDYKPHQDDYSSAEKFLTHFNKKCKNQTLALVSSRPEGRCVAACGDFGLVMKAYFDKMESNGISVMAAILLVDNHALTVRLRIKNTTEGCTHYVVSVYDPNVTNDKIRIMSESKENIKHYSLMDFMNVDYSLLKWSNDHVINQSVAIIPALPKEQLLMLKGSVDEITPPLSPATMNLLMAIGQNHQLTQLMIQLQKMPELHRTEMLTAYNSINLPGLYLAINYGNADIVETIFNSLSETGYEGLLSKKNLMHILEAKDKNGFSGLFLAISRKDKNVVTSILNALPKLAATHHLDNEQVYKFLSAKNRTSSHVLYHVMANGDADMLKIVLNALPLLIRTCHLTKEQVLDLLKAKDFYGCPGLYLAMQNGHSDIVKVILEALPSLAQEINISASDIVDLLTAKSLARDTGLFMAMQRGHMNVINTIFNALPTLFNTFKFDKKNMKPLLLANNSNEYPGLFSAIQHKQQNVVETVYLALSDHARLFGFTAEDIMDFWQHKAPQKYSAFELAFEFGHRVIAELILNTLNKMAESFGFTDNPRYIAEKNYMEALLKKASPHTVR" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"EG11208-MONOMER" "regulator of acetyl CoA synthetase" ["ArpA", "YjaC", "Arp"] "MITRIPRSSFSANINNTAQTNEHQTLSELFYKELEDKFSGKELATPLLKSFSENCRQNGRHIFSNKDFVIKFSTSVLQADKKEITIINKNENTTLTQTIAPIFEKYLMEILPQRSDTLDKQELNLKSDRKEKEFPRIKLNGQCYFPGRPQNRIVCRHIAAQYINDIYQNVDYKPHQDDYSSAEKFLTHFNKKCKNQTLALVSSRPEGRCVAACGDFGLVMKAYFDKMESNGISVMAAILLVDNHALTVRLRIKNTTEGCTHYVVSVYDPNVTNDKIRIMSESKENIKHYSLMDFMNVDYSLLKWSNDHVINQSVAIIPALPKEQLLMLKGSVDEITPPLSPATMNLLMAIGQNHQLTQLMIQLQKMPELHRTEMLTAYNSINLPGLYLAINYGNADIVETIFNSLSETGYEGLLSKKNLMHILEAKDKNGFSGLFLAISRKDKNVVTSILNALPKLAATHHLDNEQVYKFLSAKNRTSSHVLYHVMANGDADMLKIVLNALPLLIRTCHLTKEQVLDLLKAKDFYGCPGLYLAMQNGHSDIVKVILEALPSLAQEINISASDIVDLLTAKSLARDTGLFMAMQRGHMNVINTIFNALPTLFNTFKFDKKNMKPLLLANNSNEYPGLFSAIQHKQQNVVETVYLALSDHARLFGFTAEDIMDFWQHKAPQKYSAFELAFEFGHRVIAELILNTLNKMAESFGFTDNPRYIAEKNYMEALLKKASPHTVR" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "EG11209-MONOMER" "putative phosphate starvation-inducible protein PsiE" ["PsiE", "YjbA"] "MTSLSRPRVEFISTILQTVLNLGLLCLGLILVVFLGKETVHLADVLFAPEQTSKYELVEGLVVYFLYFEFIALIVKYFQSGFHFPLRYFVYIGITAIVRLIIVDHKSPLDVLIYSAAILLLVITLWLCNSKRLKRE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11210-MONOMER" "regulator of diguanylate cyclase RdcA" ["RdcA", "CrfC", "YjdA", "clamp-binding protein CrfC", "clamp-binding sister replication fork colocalization protein"] "MYTQTLYELSQEAERLLQLSRQQLQLLEKMPLSVPGDDAPQLALPWSQPNIAERHAMLNNELRKISRLEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTDVLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARYELANNGKLPPPEQQRWVEDFAHAALGRRWRHADLADLEHIRHAADQLWEDSLFAQPIQALLHAAYANASLYALRSAAHKLLNYAQQAREYLDFRAHGLNVACEQLRQNIHQIEESLQLLQLNQAQVSGEIKHEIELALTSANHFLRQQQDALKVQLAALFQDDSEPLSEIRTRCETLLQTAQNTISRDFTLRFAELESTLCRVLTDVIRPIEQQVKMELSESGFRPGFHFPVFHGVVPHFNTRQLFSEVISRQEATDEQSTRLGVVRETFSRWLNQPDWGRGNEKSPTETVDYSVLQRALSAEVDLYCQQMAKVLAEQVDESVTAGMNTFFAEFASCLTELQTRLRESLALRQQNESVVRLMQQQLQQTVMTHGWIYTDAQLLRDDIQTLFTAERY" ["CCO-BAC-NUCLEOID"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11211-MONOMER" "EF-P-lysine lysyltransferase" ["EpmA", "YjeA", "GenX", "PoxA"] "MSETASWQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDRA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -953,7 +953,7 @@ "EG11304-MONOMER" "Qin prophage; protein YdfE" ["YdfE"] "MSKVFICAAIPDELATREEGAVAVATAIEAGDERRARAKFHWQFLEHYPAAQDCAYKFIVCEDKPGIPRPALDSWDAEYMQENRWDEESASFVPVETESDPMNVTFDKLAPEVQNAVMVKFDTCENITVDMVISAQELLQEDMATFDGHIVEALMKMPEVNAMYPELKLHAIGWVKHKCIPGAKWPEIQAEMRIWKKRREGERKETGKYTSVVDLARARANQQYTENSTGKISPVIAAIHREYKQTWKTLDDELAYGRCFADRQNLMVCLRSMPNVFTGSCARMRCCLSENLLYRHRNGHIQAEWP" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11305-MONOMER" "twin arginine protein translocation system - TatE protein" ["YbeC"] "MGEISITKLLVVAALVVLLFGTKKLRTLGGDLGAAIKGFKKAMNDDDAAAKKGADVDLQAEKLSHKE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG11306-MONOMER" "lipoyl synthase" ["Lip", "LipA"] "MSKPIVMERGVKYRDADKMALIPVKNVATEREALLRKPEWMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCDVAHGRPVAPDANEPVKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGLGETNEEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQRYVSPDEFDEMKAEALAMGFTHAACGPFVRSSYHADLQAKGMEVK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 2} 1 -"EG11309-MONOMER" "pyridoxal reductase" ["PdxI", "YdbC"] "MSSNTFTLGTKSVNRLGYGAMQLAGPGVFGPPRDRHVAITVLREALALGVNHIDTSDFYGPHVTNQIIREALYPYSDDLTIVTKIGARRGEDASWLPAFSPAELQKAVHDNLRNLGLDVLDVVNLRVMMGDGHGPAEGSIEASLTVLAEMQQQGLVKHIGLSNVTPTQVAEARKIAEIVCVQNEYNIAHRADDAMIDALAHDGIAYVPFFPLGGFTPLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENMAAEKLHLSEEVLSTLDGISRE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 +"EG11309-MONOMER" "pyridoxal reductase" ["PdxI", "YdbC", "Pyridoxine 4-dehydrogenase"] "MSSNTFTLGTKSVNRLGYGAMQLAGPGVFGPPRDRHVAITVLREALALGVNHIDTSDFYGPHVTNQIIREALYPYSDDLTIVTKIGARRGEDASWLPAFSPAELQKAVHDNLRNLGLDVLDVVNLRVMMGDGHGPAEGSIEASLTVLAEMQQQGLVKHIGLSNVTPTQVAEARKIAEIVCVQNEYNIAHRADDAMIDALAHDGIAYVPFFPLGGFTPLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENMAAEKLHLSEEVLSTLDGISRE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11310-MONOMER" "DUF2773 domain-containing protein YdbD" ["YdbD", "protein involved in detoxification of methylglyoxal"] "MLKARNCGWIRLLPLFMLSLPVQAELRCVANAVDIESFFSAATAEDKQQVEQAINSSVNLVPFGLSASNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVADSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPVVASSTNSEFMVRASDKHDTENVKKALMIINPDAYYWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFRPKPSPELVQELQMLDEGKVAAFEGRDIATFDLAVMRTLPRLKGISANLRKQLINSNDEQTIESMARYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRMSRLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRSDDSSIRQVGAGGQLTYNQAMQLANDSSNNVVTSLAFKLAEMKHHGQLLRMTPQESDKVAGYLYQKFENDDDLIRVLFLALPDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSMKQKIWQRALSHRKNNPKADSDAYETSADMILSELISHGEVDDQMLLNATALIRSDDWDFLESALISWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSRAQVDEALRVYYALDPDALAQLDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVDVLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDELY" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11311-MONOMER" "tRNA-dihydrouridine synthase B" ["DusB", "YhdG"] "MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENFA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11312-MONOMER" "RadC-like JAB domain-containing protein YicR" ["YicR", "RadC"] "MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQLKGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHRRLFSGTLNHVEVHPREIIREAIKINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 @@ -964,17 +964,17 @@ "EG11334-MONOMER" "DNA ligase B" ["LigB", "YicF"] "MKVWMAILIGILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPRDVMMPPLNGAVMHPVAHTGVRKMVDKNALSLWMRERSDLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANSTLQGEIFLQREGHIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAELPFVTDGVVVRAAKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFEP" [] [] 0 [] {} 0 "EG11336-MONOMER" "DNA-specific endonuclease I" ["EndA"] "MYRYLSIAAVVLSAAFSGPALAEGINSFSQAKAAAVKVHADAPGTFYCGCKINWQGKKGVVDLQSCGYQVRKNENRASRVEWEHVVPAWQFGHQRQCWQDGGRKNCAKDPVYRKMESDMHNLQPSVGEVNGDRGNFMYSQWNGGEGQYGQCAMKVDFKEKAAEPPARARGAIARTYFYMRDQYNLTLSRQQTQLFNAWNKMYPVTDWECERDERIAKVQGNHNPYVQRACQARKS" [] ["CCO-PERI-BAC"] 0 [] {} 0 "EG11338-MONOMER" "acidic protein MsyB" ["MsyB", "acidic protein that suppresses heat sensitivity of a secY mutant"] "MTMYATLEEAIDAAREEFLADNPGIDAEDANVQQFNAQKYVLQDGDIMWQVEFFADEGEEGECLPMLSGEAAQSVFDGDYDEIEIRQEWQEENTLHEWDEGEFQLEPPLDTEEGRAAADEWDER" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11339-MONOMER" "lipopolysaccharide glucosyltransferase I" ["WaaG", "RfaG"] "MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGGLDG" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"EG11339-MONOMER" "lipopolysaccharide glucosyltransferase I" ["WaaG", "RfaG"] "MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGGLDG" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "EG11340-MONOMER" "lipopolysaccharide core heptose (I) kinase" ["WaaP", "RfaP", "L-glycero-D-manno-heptose (I) kinase"] "MVELKEPLATLWRGKDAFAEVKKLNGEVFRELETRRTLRFELSGKSYFLKWHKGTTLKEIIKNLLSLRMPVLGADREWHAIHRLSDVGVDTMKGIGFGEKGLNPLTRASFIITEDLTPTISLEDYCADWAVNPPDIRVKRMLIARVATMVRKMHTAGINHRDCYICHFLLHLPFTGREDELKISVIDLHRAQIRAKVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFGMPLRKILSLEQNLLNMASVKAERIKERTQRKGL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11341-MONOMER" "lipopolysaccharide core heptosyltransferase 3" ["WaaQ", "RfaQ", "HepIII", "lipopolysaccharide core heptosyltransferase III"] "MRYHGDMLLTTPVISTLKQNYPDAKIDMLLYQDTIPILSENPEINALYGISNKGAGTFDKIKNVLSLIKTLRANNYDLVINLTDQWMVALLVRCLPARMKISQLYGHRQHGIWKKSFTHLAPIHGTHIVERNLSVLEPLGITDFYTDTTMSYAEDCWKKMRRELDALGVKDHYVVIQPTARQIFKCWDNDKFSKVIDALQQRGYQVVLTCGPSADDLACVDEIARGCETKPITGLAGKTRFPELGALIDHAVLFIGVDSAPGHIAAAVKTPVISLFGATDHVFWRPWTENIIQFWAGNYQKMPTRHELDRNKKYLSVIPAEDVIAATEKLLPEDAPSADRNAQL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11342-MONOMER" "MarC family putative inner membrane protein YchE" ["YchE"] "MIQTFFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTAAARNKTNLTANLSVAIILWISLFLGDTILQLFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSISYLFGFFVAIALFALCCWGLFRMAPWLVRVLRQTGINVITRIMGLLLMALGIEFIVTGIKGIFPGLLN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11344-MONOMER" "tRNA-specific 2-thiouridylase" ["YcfB", "AsuE", "TrmU", "MnmA"] "MSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVDREPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNGEVCLGGGIIEQRLPLPV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11345-MONOMER" "lysogenization regulator" ["HslZ", "HflD", "YcfC"] "MAKNYYDITLALAGICQSARLVQQLAHQGHCDADALHVSLNSIIDMNPSSTLAVFGGSEANLRVGLETLLGVLNASSRQGLNAELTRYTLSLMVLERKLSSAKGALDTLGNRINGLQRQLEHFDLQSETLMSAMAAIYVDVISPLGPRIQVTGSPAVLQSPQVQAKVRATLLAGIRAAVLWHQVGGGRLQLMFSRNRLTTQAKQILAHLTPEL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG11346-MONOMER" "flagellar protein FliE" ["Fla", "FlaN", "FliE"] "MSAIQGIEGVISQLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV" [] ["CCO-PERI-BAC", "CCO-CELL-PROJECTION"] 1 [] {} 0 +"EG11346-MONOMER" "flagellar protein FliE" ["Fla", "FlaN", "FliE"] "MSAIQGIEGVISQLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV" [] ["CCO-PERI-BAC", "CCO-CELL-PROJECTION"] 1 [] {} 1 "EG11350-MONOMER" "lipopolysaccharide core biosynthesis protein WaaS" ["WaaS", "RfaS"] "MTIYFINWVADYELKMIQYLKKKYKIKNITTPKKYNWINKKISKIGMDNAWLGRLFIKHYLNDIKKDDIIIINDSVVNKGINKQILKNINCHKVLLLRNTVGEDFILDNANYFDIIYDFEHRFIGNEKIKAIEQFFPIGMDEIRNYSLSDKNNSQPICFFLGRDKGRLQIINELAERLTTLGCKLDFNVVKDKTSSTTSKYLIEKQISYEENIRRTLNANIIVDITKENQSGWTLRILEALFFNKKLITNNINVFGSEIYSESRFFIIGHDDWDKLEYFINSSVKPMDYDSLYKFSPDKMMSTIVSDFIDK" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11351-MONOMER" "UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase" ["Syn", "Lps", "WaaB", "RfaB"] "MKIAFIGEAVSGFGGMETVIRDVITTFRQQHIQSEMFFFCRNDKMDKGWLEGIKYSCSFSNIRLGFLRRAKHIHALSKWLQEYQPDIVICIDVISCLFAAKARKKSGIDMPVFSWPHFSLDHKKHAEYITCADYHLAISSGIKQQMINRGVAESTINVIFNPVETKDSVIPAPEEGETATFIYVGRMKFEGQKRVKDLLDGLSQAKGNWKLHVLGDGSDFEKCQAYGRELNIDDRIVWYGWQQYPWELVQQDIEKVSALLLTSSFEGFPMTLLEALSWGIPCISADCVSGPADIIQPDVNGHLYQPGDIAGFVTLLNKYIAGEIHIEHEKIPASIDEFYQSKYYDRLHKVIISAISRRK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11352-MONOMER" "UDP-D-glucose:(glucosyl)LPS α-1,3-glucosyltransferase" ["WaaO", "WaaI", "RfaI"] "MQQVFFQETEFLNSVIDYDHKVETENLCLDIAYGTDKNFLFGCGISIASILKYNEGSRLCFHIFTDYFGDDDRKYFDALALQYKTRIKIYLINGDRLRSLPSTKNWTHAIYFRFVIADYFINKAPKVLYLDADIICQGTIEPLINFSFPDDKVAMVVTEGQADWWEKRAHSLGVAGIAKGYFNSGFLLINTAQWAAQQVSARAIAMLNEPEIIKKITHPDQDVLNMLLADKLIFADIKYNTQFSLNYQLKESFINPVTNDTIFIHYIGPTKPWHDWAWDYPVSQAFMEAKNASPWKNTALLKPNNSNQLRYSAKHMLKKHRYLKGFSNYLFYFIEKIKH" [] ["CCO-CYTOSOL"] 0 [] {"MN+2": 1} 0 -"EG11353-MONOMER" "UDP-glucose:(glucosyl)LPS α-1,2-glucosyltransferase" ["WaaR", "WaaJ", "RfaJ", "UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase"] "MDSFPAIEIDKVKAWDFRLANINTSECLNVAYGVDANYLDGVGVSITSIVLNNRHINLDFYIIADVYNDGFFQKIAKLAEQNQLRITLYRINTDKLQCLPCTQVWSRAMYFRLFAFQLLGLTLDRLLYLDADVVCKGDISQLLHLGLNGAVAAVVKDVEPMQEKAVSRLSDPELLGQYFNSGVVYLDLKKWADAKLTEKALSILMSKDNVYKYPDQDVMNVLLKGMTLFLPREYNTIYTIKSELKDKTHQNYKKLITESTLLIHYTGATKPWHKWAIYPSVKYYKIALENSPWKDDSPRDAKSIIEFKKRYKHLLVQHHYISGIIAGVCYLCRKYYRK" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL"] 0 [] {"MN+2": 1} 0 +"EG11353-MONOMER" "UDP-glucose:(glucosyl)LPS α-1,2-glucosyltransferase" ["WaaR", "WaaJ", "RfaJ", "UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase"] "MDSFPAIEIDKVKAWDFRLANINTSECLNVAYGVDANYLDGVGVSITSIVLNNRHINLDFYIIADVYNDGFFQKIAKLAEQNQLRITLYRINTDKLQCLPCTQVWSRAMYFRLFAFQLLGLTLDRLLYLDADVVCKGDISQLLHLGLNGAVAAVVKDVEPMQEKAVSRLSDPELLGQYFNSGVVYLDLKKWADAKLTEKALSILMSKDNVYKYPDQDVMNVLLKGMTLFLPREYNTIYTIKSELKDKTHQNYKKLITESTLLIHYTGATKPWHKWAIYPSVKYYKIALENSPWKDDSPRDAKSIIEFKKRYKHLLVQHHYISGIIAGVCYLCRKYYRK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"MN+2": 1} 0 "EG11354-MONOMER" "multidrug efflux pump membrane fusion protein EmrA" ["EmrA"] "MSANAETQTPQQPVKKSGKRKRLLLLLTLLFIIIAVAIGIYWFLVLRHFEETDDAYVAGNQIQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDARQAFEKAKTALASSVRQTHQLMINSKQLQANIEVQKIALAKAQSDYNRRVPLGNANLIGREELQHARDAVTSAQAQLDVAIQQYNANQAMILGTKLEDQPAVQQAATEVRNAWLALERTRIISPMTGYVSRRAVQPGAQISPTTPLMAVVPATNMWVDANFKETQIANMRIGQPVTITTDIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIELDQKQLEQYPLRIGLSTLVSVNTTNRDGQVLANKVRSTPVAVSTAREISLAPVNKLIDDIVKANAG" ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 1 "EG11355-MONOMER" "RNA polymerase sigma factor FliA" ["RpoF", "FlaD", "FliA", "sigma F factor", "sigma 28 factor", "σ28", "RNA polymerase, sigma 28 (sigma F) factor"] "MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11356-MONOMER" "DNA-binding transcriptional regulator FliZ" ["YedH", "FliZ"] "MMVQHLKRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENGWQTEQKSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNHLHEQNISLDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQHYQRQTCTRLVQKSSSLPSSDIY" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -986,7 +986,7 @@ "EG11364-MONOMER" "carbohydrate-specific outer membrane porin, cryptic" ["YieC", "BglH"] "MFRRNLITSAILLMAPLAFSAQSLAESLTVEQRLELLEKALRETQSELKKYKDEEKKKYTPATVNRSVSTNDQGYAANPFPTSSAAKPDAVLVKNEEKNASETGSIYSSMTLKDFSKFVKDEIGFSYNGYYRSGWGTASHGSPKSWAIGSLGRFGNEYSGWFDLQLKQRVYNENGKRVDAVVMMDGNVGQQYSTGWFGDNAGGENYMQFSDMYVTTKGFLPFAPEADFWVGKHGAPKIEIQMLDWKTQRTDAAAGVGLENWKVGPGKIDIALVREDVDDYDRSLQNKQQINTNTIDLRYKDIPLWDKATLMVSGRYVTANESASEKDNQDNNGYYDWKDTWMFGTSLTQKFDKGGFNEFSFLVANNSIASNFGRYAGASPFTTFNGRYYGDHTGGTAVRLTSQGEAYIGDHFIVANAIVYSFGNDIYSYETGAHSDFESIRAVVRPAYIWDQYNQTGVELGYFTQQNKDANSNKFNESGYKTTLFHTFKVNTSMLTSRPEIRFYATYIKALENELDGFTFEDNKDDQFAVGAQAEIWW" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 "EG11371-MONOMER" "phosphatidylglycerophosphatase C" ["PgpC", "YfhB", "PGPC-ase"] "MATHERRVVFFDLDGTLHQQDMFGSFLRYLLRRQPLNALLVLPLLPIIAIALLIKGRAARWPMSLLLWGCTFGHSEARLQTLQADFVRWFRDNVTAFPLVQERLTTYLLSSDADIWLITGSPQPLVEAVYFDTPWLPRVNLIASQIQRGYGGWVLTMRCLGHEKVAQLERKIGTPLRLYSGYSDSNQDNPLLYFCQHRWRVTPRGELQQLE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11372-MONOMER" "tRNA adenosine34 deaminase" ["TadA", "YfhC", "tRNA-specific adenosine deaminase"] "MSEVEFSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 -"EG11373-MONOMER" "membrane-bound lytic murein transglycosylase F" ["YfhD", "MltF"] "MKKLKINYLFIGILALLLAVALWPSIPWFGKADNRIAAIQARGELRVSTIHTPLTYNEINGKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNADLLAAGLVYNSERVKNYQPGPTYYSVSQQLVYKVGQYRPRTLGNLTAEQLTVAPGHVVVNDLQTLKETKFPELSWKVDDKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELAVALDITDEQPVTWFSPLDGDNTLSAALLDFFNEMNEDGTLARIEEKYLGHGDDFDYVDTRTFLRAVDAVLPQLKPLFEKYAEEIDWRLLAAIAYQESHWDAQATSPTGVRGMMMLTKNTAQSLGITDRTDAEQSISGGVRYLQDMMSKVPESVPENERIWFALAAYNMGYAHMLDARALTAKTKGNPDSWADVKQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQISLVGYLQEKEKQATEAAMQLAQDYPAVSPTELGKEKFPFLSFLSQSSSNYLTHSPSLLFSRKGSEEKQN" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-OUTER-MEM"] 0 [] {} 0 +"EG11373-MONOMER" "membrane-bound lytic murein transglycosylase F" ["YfhD", "MltF"] "MKKLKINYLFIGILALLLAVALWPSIPWFGKADNRIAAIQARGELRVSTIHTPLTYNEINGKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNADLLAAGLVYNSERVKNYQPGPTYYSVSQQLVYKVGQYRPRTLGNLTAEQLTVAPGHVVVNDLQTLKETKFPELSWKVDDKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELAVALDITDEQPVTWFSPLDGDNTLSAALLDFFNEMNEDGTLARIEEKYLGHGDDFDYVDTRTFLRAVDAVLPQLKPLFEKYAEEIDWRLLAAIAYQESHWDAQATSPTGVRGMMMLTKNTAQSLGITDRTDAEQSISGGVRYLQDMMSKVPESVPENERIWFALAAYNMGYAHMLDARALTAKTKGNPDSWADVKQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQISLVGYLQEKEKQATEAAMQLAQDYPAVSPTELGKEKFPFLSFLSQSSSNYLTHSPSLLFSRKGSEEKQN" ["CCO-OUTER-MEM"] ["CCO-CE-BAC", "CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-OUTER-MEM"] 0 [] {} 0 "EG11376-MONOMER" "cell division protein FtsP" ["Sui", "SufI", "FtsP", "cell division protein required during stress conditions"] "MSLSRRQFIQASGIALCAGAVPLKASAAGQQQPLPVPPLLESRRGQPLFMTVQRAHWSFTPGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMTVAGLQVPGPLMGGPARMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGVQSPYVEVSRGWVRLRLLNASNSRRYQLQMNDGRPLHVISGDQGFLPAPVSVKQLSLAPGERREILVDMSNGDEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPLVTDSLPMRLLPTEIMAGSPIRSRDISLGDDPGINGQLWDVNRIDVTAQQGTWERWTVRADEPQAFHIEGVMFQIRNVNGAMPFPEDRGWKDTVWVDGQVELLVYFGQPSWAHFPFYFNSQTLEMADRGSIGQLLVNPVP" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 "EG11378-MONOMER" "iron-sulfur cluster insertion protein SufA" ["YdiC", "SufA", "Fe-S transport protein in Fe-S cluster assembly"] "MDMHSGTFNPQDFAWQGLTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESFGV" [] ["CCO-CYTOSOL"] 0 [] {"CPD-6": 1} 1 "EG11381-MONOMER" "surface composition regulator" ["ScoR", "GlgS"] "MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQARELELEH" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -1012,7 +1012,7 @@ "EG11414-MONOMER" "DNA polymerase III subunit ψ" ["HolD"] "MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALWQQICTYEHDFFPRND" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11415-MONOMER" "DNA protection during starvation protein" ["Vtm", "PexB", "Dps", "stationary phase nucleoid protein that sequesters iron and protects DNA from damage"] "MSTAKLVKSKATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE" ["CCO-MEMBRANE", "CCO-BAC-NUCLEOID"] ["CCO-CYTOSOL", "CCO-BAC-NUCLEOID"] 1 [] {"FE+2": 2} 1 "EG11422-MONOMER" "putative lipopolysaccharide kinase InaA" ["YfaG", "InaA", "pH-inducible protein involved in stress response"] "MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIYVKTEGNAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11423-MONOMER" "putative ADP-heptose:LPS heptosyltransferase 4" ["WaaU", "RfaK", "heptosyl transferase IV", "putative UDP-N-acetyl-D-glucosaminyl transferase", "ADP-L-glycero-β-D-manno-heptose:LPS heptosyltransferase IV"] "MRLGTFHKKKRFYINKIKINFLSFLFRNKINNQITDPAQVKSCLIIHDNNKLGDLIVLSSIYRELYSKGVKITLLTNRKGGEFLSNNKNIFEFCIKESTGFLEMLTLCKHLRDLQFDIVLDPFETMPSFKHSLILSSLKDSYILGFDHWYKRYYSFYHPHDECLKEHMSTRAIEILKHIYGEGKFSTNYDLHLPVDVEDKIKEFIGDTRIVIINPLGAKKICRLTFEQIKVIYQEVKTHFENYRIIFTGLPQDLLTIPILEIETLPFDEFIYTVALTKYSDFVISVDTALVHIAAAYHKPTLAFYPNSRTPEYPSHLIWSPNHHKSIQIVSPTYTVKDIDTETLTNSVKRLSCIDKK" [] ["CCO-CYTOSOL", "CCO-MEMBRANE"] 0 [] {} 0 +"EG11423-MONOMER" "putative ADP-heptose:LPS heptosyltransferase 4" ["WaaU", "RfaK", "heptosyl transferase IV", "putative UDP-N-acetyl-D-glucosaminyl transferase", "ADP-L-glycero-β-D-manno-heptose:LPS heptosyltransferase IV"] "MRLGTFHKKKRFYINKIKINFLSFLFRNKINNQITDPAQVKSCLIIHDNNKLGDLIVLSSIYRELYSKGVKITLLTNRKGGEFLSNNKNIFEFCIKESTGFLEMLTLCKHLRDLQFDIVLDPFETMPSFKHSLILSSLKDSYILGFDHWYKRYYSFYHPHDECLKEHMSTRAIEILKHIYGEGKFSTNYDLHLPVDVEDKIKEFIGDTRIVIINPLGAKKICRLTFEQIKVIYQEVKTHFENYRIIFTGLPQDLLTIPILEIETLPFDEFIYTVALTKYSDFVISVDTALVHIAAAYHKPTLAFYPNSRTPEYPSHLIWSPNHHKSIQIVSPTYTVKDIDTETLTNSVKRLSCIDKK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11424-MONOMER" "O-antigen ligase" ["WaaL", "RfaL", "M-antigen ligase", "surface polymer:lipid A-core ligase"] "MLTSFKLHSLKPYTLKSSMILEIITYILCFFSMIIAFVDNTFSIKIYNITAIVCLLSLILRGRQENYNIKNLILPLSIFLIGLLDLIWYSAFKVDNSPFRATYHSYLNTAKIFIFGSFIVFLTLTSQLKSKKESVLYTLYSLSFLIAGYAMYINSIHENDRISFGVGTATGAAYSTMLIGIVSGVAILYTKKNHPFLFLLNSCAVLYVLALTQTRATLLLFPIICVAALIAYYNKSPKKFTSSIVLLIAILASIVIIFNKPIQNRYNEALNDLNSYTNANSVTSLGARLAMYEIGLNIFIKSPFSFRSAESRAESMNLLVAEHNRLRGALEFSNVHLHNEIIEAGSLKGLMGIFSTLFLYFSLFYIAYKKRALGLLILTLGIVGIGLSDVIIWARSIPIIIISAIVLLLVINNRNNTIN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11425-MONOMER" "lipopolysaccharide core heptose (II) kinase" ["WaaY", "RfaY", "L-glycero-D-manno-heptose (II) kinase"] "MIQKSKIKDLVVFTDENNSKYLNVLNDFLSYNINIIKVFRSIDDTKVMLIDTDYGKLILKVFSPKVKRNERFFKSLLKGDYYERLFEQTQKVRNEGLNTLNDFYLLAERKTLRFVHTYIMIIEYIDGIELCDMPDIDDALKNKIQQSINALHQHGMVSGDPHRGNFIIKNGEVRIIDLSGKRASAQRKAKDRIDLERHYGIKNEIRDLGYYLLVYRKKMRNFMRRLKGKPAR" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11426-MONOMER" "lipopolysaccharide core biosynthesis protein WaaZ" ["WaaZ", "RfaZ", "protein involved in KdoIII attachment during lipopolysaccharide core biosynthesis"] "MKNIRYIDKKDVENLIENKISDDVIIFLSGPTSQKTPLSVLRTKDIIAVNGSAQYLLSNNIVPFIYVLTDVRFLHQRRDDFYKFSQRSRYTIVNVDVYEHASKEDKLYILQNCLVLRSFYRREKGGFIKKIKFNILRQIHKELLISVPLSKKGRLVGFCKDISLGYCSCHTIAFAAIQIAYSLKYARIICSGLDLTGSCSRFYDENKNPMPSELSRDLFKILPFFRFMHDNVKDINIYNLSDDTAISYDVIPFIKLQDISAEESKDMTRKKMQYRTSTDSYAN" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -1199,7 +1199,7 @@ "EG11766-MONOMER" "putative RHS domain-containing protein YibJ" ["RhsJ", "YibJ"] "MQMLDRLESEILADRVSEESRRWLASCGLTVEQMKNQMDPVYTPARKIHLYHCDHRGLPLALISTEGATAWCAEYDEWGNLLSDENPHHLQQLIRLPGQQYDEESGLYYNRHRYYDPLLGRYITQDPIGLKGGWNFYQYPLNPVINVDPQGLVDINLYPESDLIHSVADEINIPGVFTIGGHGTPTSIESATRSIMTAKDLAYLIKFDGNYKDGMTVWLFSCNTGKGQNSFAS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11768-MONOMER" null ["MnmH", "SelU", "YbbB"] "MQERHTEQDYRALLIADTPIIDVRAPIEFEHGAMPAAINLPLMNNDERAAVGTCYKQQGSDAALALGHKLVAGEIRQQRMDAWRAACLQNPQGILCCARGGQRSHIVQSWLHAAGIDYPLVEGGYKALRQTAIQATIELAQKPIVLIGGCTGSGKTLLVQQQPNGVDLEGLARHRGSAFGRTLQPQLSQASFENLLAAEMLKTDARQNLRLWVLEDESRMIGSNHLPECLRERMTQAAIAVVEDPFEIRLERLNEEYFLRMHHDFTHAYGDEQGWQEYCEYLHHGLSAIKRRLGLQRYNELAARLDAALTTQLTTGSTDGHLAWLVPLLEEYYDPMYRYQLEKKAEKVVFRGEWAEVAEWVKAR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11769-MONOMER" "PF15631 family protein YbbC" ["YbbC"] "MKYSSIFSMLSFFILFACNETAVYGSDENIIFMRYVEKLHLDKYSVKNTVKTETMAIQLAEIYVRYRYGERIAEEEKPYLITELPDSWVVEGAKLPYEVAGGVFIIEINKKNGCVLNFLHSK" [] ["CCO-MEMBRANE"] 0 [] {} 0 -"EG11770-MONOMER" "putative uncharacterized protein YbbD" ["YbbD"] "MLAISSNLSKMIIFIFAIIIIVVLCVITYLYLYKDESLVSKHYINYMAIPENDGVFTWLPDFFPHVAVDISIYTNVEDDYFFLIFP*QMMMGVGLRKH*Q*GPGNKWRKSYQRMIQIQKKCGVNMVRYQGKGMV*TFFLLVKLMLRIIL*QILELDCLMLVQ" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11770-MONOMER" "putative uncharacterized protein YbbD" ["YbbD"] "MLAISSNLSKMIIFIFAIIIIVVLCVITYLYLYKDESLVSKHYINYMAIPENDGVFTWLPDFFPHVAVDISIYTNVEDDYFFLIFP*QMMMGVGLRKH*Q*GPGNKWRKSYQRMIQIQKKCGVNMVRYQGKGMV*TFFLLVKLMLRIIL*QILELDCLMLVQ" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11775-MONOMER" "ribbon-helix-helix domain-containing protein YbfE" ["YbfE", "LexA-regulated protein"] "MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAEAVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11776-MONOMER" "esterase" ["YbfF"] "MKLNIRAQTAQNQHNNSPIVLVHGLFGSLDNLGVLARDLVNDHNIIQVDMRNHGLSPRDPVMNYPAMAQDLVDTLDAQQIDKATFIGHSMGGKAVMALTALASDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPGGNSPYVSEQYRDDLLAQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLND" ["CCO-CYTOSOL"] [] 0 [] {} 0 "EG11778-MONOMER" "PF10964 domain-containing protein YbfG" ["YbfG", "YbfH"] "MREMNQLVNTEDSAWPIIQNWLKDATNHTELLPVNKDLAETALYQLQVTTKSPMGALVYGSGGLLIDNG*LRIAGSGHPRLPRDPVSWTQRPEFAGVRALPIADDVAGVIFALNGGDLGEDTGCVYYFAPDTLNWESLEVGYSEFLQWALSGDLDTFYENVRWQQWREDVIKLSATEAFTFYPFLWVQSEEARTRKVISLTELWEMQYQMKETFTQ" [] [] 0 [] {} 0 @@ -1289,7 +1289,7 @@ "EG11906-MONOMER" "putative PTS multiphosphoryl transfer protein PtsA" ["FrwA", "YijH", "PtsA", "Enzyme IAni", "TTP", "triphosphoryl transfer protein"] "MALIVEFICELPNGVHARPASHVETLCNTFSSQIEWHNLRTDRKGNAKSALALIGTDTLAGDNCQLLISGADEQEAHQRLSQWLRDEFPHCDAPLAEVKSDELEPLPVSLTNLNPQIIRARTVCSGSAGGILTPISSLDLNALGNLPAAKGVDAEQSALENGLTLVLKNIEFRLLDSDGATSAILEAHRSLAGDTSLREHLLAGVSAGLSCAEAIVASANHFCEEFSRSSSSYLQERALDVRDVCFQLLQQIYGEQRFPAPGKLTQPAICMADELTPSQFLELDKNHLKGLLLKSGGTTSHTVILARSFNIPTLVGVDIDALTPWQQQTIYIDGNAGAIVVEPGEAVARYYQQEARVQDALREQQRVWLTQQARTADGIRIEIAANIAHSVEAQAAFGNGAEGVGLFRTEMLYMDRTSAPGESELYNIFCQALESANGRSIIVRTMDIGGDKPVDYLNIPAEANPFLGYRAVRIYEEYASLFTTQLRSILRASAHGSLKIMIPMISSMEEILWVKEKLAEAKQQLRNEHIPFDEKIQLGIMLEVPSVMFIIDQCCEEIDFFSIGSNDLTQYLLAVDRDNAKVTRHYNSLNPAFLRALDYAVQAVHRQGKWIGLCGELGAKGSVLPLLVGLGLDELSMSAPSIPAAKARMAQLDSRECRKLLNQAMACRTSLEVEHLLAQFRMTQQDAPLVTAECITLESDWRSKEEVLKGMTDNLLLAGRCRYPRKLEADLWAREAVFSTGLGFSFAIPHSKSEHIEQSTISVARLQAPVRWGDDEAQFIIMLTLNKHAAGDQHMRIFSRLARRIMHEEFRNALVNAASADAIASLLQHELEL" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "EG11910-MONOMER" "putative formate acetyltransferase 2" ["YijL", "PflD", "pyruvate formate-lyase 2"] "MTNRISRLKTALFANTREISLERALLYTASHRQTEGEPVILRRAKATAYILEHVEISIRDEELIAGNRTVKPRAGIMSPEMDPYWLLKELDQFPTRPQDRFAISEEDKRIYREELFPYWEKRSMKDFINGQMTDEVKAATNTQIFSINQTDKGQGHIIIDYPRLLNHGLGELVAQMQQHCQQQPENHFYQAALLLLEASQKHILRYAELAETMAANCTDAQRREELLTIAEISRHNAQHKPQTFWQACQLFWYMNIILQYESNASSLSLGRFDQYMLPFYQTSLTQGEDAAFLKELLESLWVKCNDIVLLRSTSSARYFAGFPTGYTALLGGLTENGRSAVNVLSFLCLDAYQSVQLPQPNLGVRTNALIDTPFLMKTAETIRFGTGIPQIFNDEVVVPAFLNRGVSLEDARDYSVVGCVELSIPGRTYGLHDIAMFNLLKVMEICLHENEGNAALTYEGLLEQIRAKISHYITLMVEGSNICDIGHRDWAPVPLLSSFISDCLEKGRDITDGGARYNFSGVQGIGIANLSDSLHALKGMVFEQQRLSFDELLSVLKANFATPEGEKVRARLINRFEKYGNDIDEVDNISAELLRHYCKEVEKYQNPRGGYFTPGSYTVSAHVPLGSVVGATPDGRFAGEQLADGGLSPMLGQDAQGPTAVLKSVSKLDNTLLSNGTLLNVKFTPATLEGEAGLRKLADFLRAFTQLKLQHIQFNVVNADTLREAQQRPQDYAGLVVRVAGYSAFFVELSKEIQDDIIRRTAHQL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11911-MONOMER" "putative pyruvate formate-lyase 2 activating enzyme PflC" ["YijM", "PflC"] "MTSSAGQRISCNVVETRRDDVARIFNIQRYSLNDGEGIRTVVFFKGCPHLCPWCANPESISGKIQTVRREAKCLHCAKCLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIPLNIRQIHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGLQVTVGG" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 0 -"EG11912-MONOMER" "putative PTS enzyme IIB component FrwD" ["YijN", "FrwD", "EIIB'frw", "Enzyme IIB'frw"] "MAYLVAVTACVSGVAHTYMAAERLEKLCLLEKWGVSIETQGALGTENRLADEDIRRADVALLITDIELAGAERFEHCRYVQCSIYAFLREPQRVMSAVRKVLSAPQQTHLILE" [] ["CCO-CYTOSOL"] 0 [] {} 1 +"EG11912-MONOMER" "putative PTS enzyme IIB component FrwD" ["YijN", "FrwD", "EIIB'frw", "Enzyme IIB'frw"] "MAYLVAVTACVSGVAHTYMAAERLEKLCLLEKWGVSIETQGALGTENRLADEDIRRADVALLITDIELAGAERFEHCRYVQCSIYAFLREPQRVMSAVRKVLSAPQQTHLILE" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 "EG11913-MONOMER" "putative DNA-binding transcriptional regulator YijO" ["YijO"] "MYHDVSYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLEIVLEGEFVDTGAGATLVPGDVLYVPAGGWNFPQWQAPATTFSVLFGKQQLGFSVVQWDGKQYQNLAKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQIQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEVAHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11914-MONOMER" "phosphoethanolamine transferase EptC" ["EptC", "YijP"] "MHSTEVQAKPLFSWKALGWALLYFWFFSTLLQAIIYISGYSGTNGIRDSLLFSSLWLIPVFLFPKRIKIIAAVIGVVLWAASLAALCYYVIYGQEFSQSVLFVMFETNTNEASEYLSQYFSLKIVLIALAYTAVAVLLWTRLRPVYIPKPWRYVVSFALLYGLILHPIAMNTFIKNKPFEKTLDNLASRMEPAAPWQFLTGYYQYRQQLNSLTKLLNENNALPPLANFKDESGNEPRTLVLVIGESTQRGRMSLYGYPRETTPELDALHKTDPNLTVFNNVVTSRPYTIEILQQALTFANEKNPDLYLTQPSLMNMMKQAGYKTFWITNQQTMTARNTMLTVFSRQTDKQYYMNQQRTQSAREYDTNVLKPFQEVLNDPAPKKLIIVHLLGTHIKYKYRYPENQGKFDGNTDHVPPGLNAEELESYNDYDNANLYNDHVVASLIKDFKAANPNGFLVYFSDHGEEVYDTPPHKTQGRNEDNPTRHMYTIPFLLWTSEKWQATHPRDFSQDVDRKYSLAELIHTWSDLAGLSYDGYDPTRSVVNPQFKETTRWIGNPYKKNALIDYDTLPYGDQVGNQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11915-MONOMER" "endonuclease V" ["YjaF", "Nfi", "EndoV", "deoxyinosine 3'-endonuclease"] "MDLASLRAQQIELASSVIREDRLDKDPPDLIAGADVGFEQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQKPDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKKRLCGKFEPLSSEPGALAPLMDKGEQLAWVWRSKARCNPLFIATGHRVSVDSALAWVQRCMKGYRLPEPTRWADAVASERPAFVRYTANQP" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 @@ -1357,9 +1357,9 @@ "EG12004-MONOMER" "DUF1307 domain-containing lipoprotein YehR" ["YehR"] "MKAFNKLFSLVVASVLVFSLAGCGDKEESKKFSANLNGTEIAITYVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEKLTYTDTYAQENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEVK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 0 "EG12005-MONOMER" "DUF1456 domain-containing protein YehS" ["YehS"] "MLSNDILRSVRYILKANNNDLVRILALGNVEATAEQIAVWLRKEDEEGFQRCPDIVLSSFLNGLIYEKRGKDESAPALEPERRINNNIVLKKLRIAFSLKTDDILAILTEQQFRVSMPEITAMMRAPDHKNFRECGDQFLRYFLRGLAARQHVKKG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12006-MONOMER" "DNA-binding transcriptional dual regulator BtsR" ["BtsR", "YehT"] "MIKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVHKLRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLLKPIDEARLEKTLARLRQERSKQDVSLLPENQQALKFIPCTGHSRIYLLQMKDVAFVSSRMSGVYVTSHEGKEGFTELTLRTLESRTPLLRCHRQYLVNLAHLQEIRLEDNGQAELILRNGLTVPVSRRYLKSLKEAIGL" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12007-MONOMER" "high-affinity pyruvate receptor" ["YehU"] "MYDFNLVLLLLQQMCVFLVIAWLMSKTPLFIPLMQVTVRLPHKFLCYIVFSIFCIMGTWFGLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSMGGMTALSCMISTIVEGLLGGLVHSILIRRGRTDKVFNPITAGAVTFVAEMVQMLIILAIARPYEDAVRLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAASTEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHLPGKPISSTYTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNRLFSSINRTLGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIKAVIRRDSEQASQLVQYLSTFFRKNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQVNIAIPQELSQQQLPAFTLQPIVENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNAGLYQPVTNASGLGMNLVDKRLRERFGDDYGISVACEPDSYTRITLRLPWRDEA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12007-MONOMER" "high-affinity pyruvate receptor" ["YehU"] "MYDFNLVLLLLQQMCVFLVIAWLMSKTPLFIPLMQVTVRLPHKFLCYIVFSIFCIMGTWFGLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSMGGMTALSCMISTIVEGLLGGLVHSILIRRGRTDKVFNPITAGAVTFVAEMVQMLIILAIARPYEDAVRLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAASTEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHLPGKPISSTYTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNRLFSSINRTLGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIKAVIRRDSEQASQLVQYLSTFFRKNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQVNIAIPQELSQQQLPAFTLQPIVENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNAGLYQPVTNASGLGMNLVDKRLRERFGDDYGISVACEPDSYTRITLRLPWRDEA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG12008-MONOMER" "DNA-binding transcriptional activator MlrA" ["MlrA", "YehV"] "MALYTIGEVALLCDINPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIKRWIDNGVQVSKVKMLLSNENVDVQNGWRDQQETLLTYLQSGNLHSLRTWIKERGQDYPAQTLTTHLFIPLRRRLQCQQPTLQALLAILDGVLINYIAICLASARKKQGKDALVVGWNIQDTTRLWLEGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQLTSWQEQGHDIFPLGI" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12013-MONOMER" "β-D-glucoside glucohydrolase, periplasmic" ["YohA", "Glh", "BglX"] "MKWLCSVGIAVSLALQPALADDLFGNHPLTPEARDAFVTELLKKMTVDEKIGQLRLISVGPDNPKEAIREMIKDGQVGAIFNTVTRQDIRAMQDQVMELSRLKIPLFFAYDVLHGQRTVFPISLGLASSFNLDAVKTVGRVSAYEAADDGLNMTWAPMVDVSRDPRWGRASEGFGEDTYLTSTMGKTMVEAMQGKSPADRYSVMTSVKHFAAYGAVEGGKEYNTVDMSPQRLFNDYMPPYKAGLDAGSGAVMVALNSLNGTPATSDSWLLKDVLRDQWGFKGITVSDHGAIKELIKHGTAADPEDAVRVALKSGINMSMSDEYYSKYLPGLIKSGKVTMAELDDAARHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVARESLVLLKNRLETLPLKKSATIAVVGPLADSKRDVMGSWSAAGVADQSVTVLTGIKNAVGENGKVLYAKGANVTSDKGIIDFLNQYEEAVKVDPRSPQEMIDEAVQTAKQSDVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKATGKPLVLVLMNGRPLALVKEDQQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQIPVYYSHLNTGRPYNADKPNKYTSRYFDEANGALYPFGYGLSYTTFTVSDVKLSAPTMKRDGKVTASVQVTNTGKREGATVVQMYLQDVTASMSRPVKQLKGFEKITLKPGETQTVSFPIDIEALKFWNQQMKYDAEPGKFNVFIGTDSARVKKGEFELL" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 +"EG12013-MONOMER" "putative periplasmic glycoside hydrolase" ["YohA", "Glh", "BglX"] "MKWLCSVGIAVSLALQPALADDLFGNHPLTPEARDAFVTELLKKMTVDEKIGQLRLISVGPDNPKEAIREMIKDGQVGAIFNTVTRQDIRAMQDQVMELSRLKIPLFFAYDVLHGQRTVFPISLGLASSFNLDAVKTVGRVSAYEAADDGLNMTWAPMVDVSRDPRWGRASEGFGEDTYLTSTMGKTMVEAMQGKSPADRYSVMTSVKHFAAYGAVEGGKEYNTVDMSPQRLFNDYMPPYKAGLDAGSGAVMVALNSLNGTPATSDSWLLKDVLRDQWGFKGITVSDHGAIKELIKHGTAADPEDAVRVALKSGINMSMSDEYYSKYLPGLIKSGKVTMAELDDAARHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVARESLVLLKNRLETLPLKKSATIAVVGPLADSKRDVMGSWSAAGVADQSVTVLTGIKNAVGENGKVLYAKGANVTSDKGIIDFLNQYEEAVKVDPRSPQEMIDEAVQTAKQSDVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKATGKPLVLVLMNGRPLALVKEDQQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQIPVYYSHLNTGRPYNADKPNKYTSRYFDEANGALYPFGYGLSYTTFTVSDVKLSAPTMKRDGKVTASVQVTNTGKREGATVVQMYLQDVTASMSRPVKQLKGFEKITLKPGETQTVSFPIDIEALKFWNQQMKYDAEPGKFNVFIGTDSARVKKGEFELL" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 "EG12015-MONOMER" "peptidoglycan DD-endopeptidase PbpG" ["YohB", "PbpG", "PBP7", "PBP8", "penicillin-binding protein 7"] "MPKFRVSLFSLALMLAVPFAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPEMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHNVSTARDLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTWIETGKVMPVPAAALSYKKQKAAQMAAAGQTAQND" [] ["CCO-PERI-BAC"] 0 [] {} 0 "EG12016-MONOMER" "putative inner membrane protein" ["YohC"] "MSHVWGLFSHPDREMQVINRENETISHHYTHHVLLMAAIPVICAFIGTTQIGWNFGDGTILKLSWFTGLALAVLFYGVMLAGVAVMGRVIWWMARNYPQRPSLAHCMVFAGYVATPLFLSGLVALYPLVWLCALVGTVALFYTGYLLYLGIPSFLNINKEEGLSFSSSTLAIGVLVLEVLLALTVILWGYGYRLF" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12017-MONOMER" "DedA family protein YohD" ["YohD"] "MDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLYLCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHLKHWVWLILVVVLVVGVRWWLKRRGKKKPDHQA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -1374,7 +1374,7 @@ "EG12028-MONOMER" "putative sugar kinase YeiI" ["YeiI"] "MNNREKEILAILRRNPLIQQNEIADMLQISRSRVAAHIMDLMRKGRIKGKGYILTEQEYCVVVGTINMDIRGMADIRYPQSASHPGTIHCSAGGVGRNIAHNLALLGRDVHLLSVIGDDFYGEMLLEETRRAGVNVSGCVRLHGQSTSTYLAIANRDDQTVLAINDTHLLEQLTPQLLNGSRDLLRHAGVVLADCNLTAEALEWVFTLADEIPVFVDTVSEFKAGKIKHWLAHIHTLKPTLPELEILWGQAITSDADRNTAVNALHQQGVQQLFVYLPDESVYCSEKDGEQFLLTAPAHTTVDSFGADDGFMAGLVYSFLEGYSFRDSARFAVACAAISRASGSLNNPTLSADNALSLVPMV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12030-MONOMER" "pyrimidine-specific ribonucleoside hydrolase RihB" ["YeiK", "RihB", "ribonucleoside hydrolase 2 (pyrimidine-specific)"] "MEKRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKLEINVPVYAGMPQPIMRQQIVADNIHGETGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGTGNFTPSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLAGGPVHDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGVLGKPANTKVGITIDTDWFWGLVEECVRGYIKTH" [] ["CCO-CYTOSOL"] 0 [] {"CA+2": 1} 1 "EG12031-MONOMER" "DNA-binding transcriptional activator YeiL" ["YeiL"] "MSESAFKDCFLTDVSADTRLFHFLARDYIVQEGQQPSWLFYLTRGRARLYATLANGRVSLIDFFAAPCFIGEIELIDKDHEPRAVQAIEECWCLALPMKHYRPLLLNDTLFLRKLCVTLSHKNYRNIVSLTQNQSFPLVNRLAAFILLSQEGDLYHEKHTQAAEYLGVSYRHLLYVLAQFIHDGLLIKSKKGYLIKNRKQLSGLALEMDPENKFSGMMQ" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 0 -"EG12033-MONOMER" "pseudouridine-5'-phosphate glycosidase" ["PsuG", "YeiN", "PscG"] "MSELKISPELLQISPEVQDALKNKKPVVALESTIISHGMPFPQNAQTAIEVEETIRKQGAVPATIAIIGGVMKVGLSKEEIELLGREGHNVTKVSRRDLPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQELANTNVTVVCAGAKSILDLGLTTEYLETFGVPLIGYQTKALPAFFCRTSPFDVSIRLDSASEIARAMVVKWQSGLNGGLVVANPIPEQFAMPEHTINAAIDQAVAEAEAQGVIGKESTPFLLARVAELTGGDSLKSNIQLVFNNAILASEIAKEYQRLAG" [] [] 0 [] {"MN+2": 1} 1 +"EG12033-MONOMER" "pseudouridine-5'-phosphate glycosidase" ["PsuG", "YeiN", "PscG"] "MSELKISPELLQISPEVQDALKNKKPVVALESTIISHGMPFPQNAQTAIEVEETIRKQGAVPATIAIIGGVMKVGLSKEEIELLGREGHNVTKVSRRDLPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQELANTNVTVVCAGAKSILDLGLTTEYLETFGVPLIGYQTKALPAFFCRTSPFDVSIRLDSASEIARAMVVKWQSGLNGGLVVANPIPEQFAMPEHTINAAIDQAVAEAEAQGVIGKESTPFLLARVAELTGGDSLKSNIQLVFNNAILASEIAKEYQRLAG" [] ["CCO-CYTOSOL"] 0 [] {"MN+2": 1} 1 "EG12035-MONOMER" "elongation factor P-like protein YeiP" ["YeiP"] "MPRANEIKKGMVLNYNGKLLLVKDIDIQSPTARGAATLYKMRFSDVRTGLKVEERFKGDDIVDTVTLTRRYVDFSYVDGNEYVFMDKEDYTPYTFTKDQIEEELLFMPEGGMPDMQVLTWDGQLLALELPQTVDLEIVETAPGIKGASASARNKPATLSTGLVIQVPEYLSPGEKIRIHIEERRYMGRAD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12036-MONOMER" "putative oxidoreductase YeiQ" ["YeiQ", "putative dehydrogenase, NAD-dependent"] "MNTIASVTLPHHVHAPRYDRQQLQSRIVHFGFGAFHRAHQALLTDRVLNAQGGDWGICEISLFSGDQLMSQLRAQNHLYTVLEKGADGNQVIIVGAVHECLNAKLDSLAAIIEKFCEPQVAIVSLTITEKGYCIDPATGALDTSNPRIIHDLQTPEEPHSAPGILVEALKRRRERGLTPFTVLSCDNIPDNGHVVKNAVLGMAEKRSPELAGWIKEHVSFPGTMVDRIVPAATDESLVEISQHLGVNDPCAISCEPFIQWVVEDNFVAGRPAWEVAGVQMVNDVLPWEEMKLRMLNGSHSFLAYLGYLSGFAHISDCMQDRAFRHAARTLMLDEQAPTLQIKDVDLTQYADKLIARFANPALKHKTWQIAMDGSQKLPQRMLAGIRIHQGRETDWSLLALGVAGWMRYVSGVDDAGNAIDVRDPLSDKIRELVAGSSSEQRVTALLSLREVFGDDLPDNPHFVQAIEQAWQQIVQFGAHQALLNTLKI" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12042-MONOMER" "protein YejG" ["YejG"] "MTSLQLSIVHRLPQNYRWSAGFAGSKVEPIPQNGPCGDNSLVALKLLSPDGDNAWSVMYKLSQALSDIEVPCSVLECEGEPCLFVNRQDEFAATCRLKNFGVAIAEPFSNYNPF" [] [] 0 [] {} 0 @@ -1383,12 +1383,12 @@ "EG12045-MONOMER" "putative DNA repair helicase RadD" ["YejI", "YejJ", "YejH", "RadD"] "MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITAADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAHELRG" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 "EG12048-MONOMER" "nucleoid-associated protein YejK" ["NdpA", "YejK"] "MSLDINQIALHQLIKRDEQNLELVLRDSLLEPTETVVEMVAELHRVYSAKNKAYGLFSEESELAQTLRLQRQGEEDFLAFSRAATGRLRDELAKYPFADGGFVLFCHYRYLAVEYLLVAVLSNLSSMRVNENLDINPTHYLDINHADIVARIDLTEWETNPESTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLLQAVDDFTAEAQLDKAERQNVRQQVYSYCNEQLQAGEEIELKSLSKELAGVSEVSFTEFAAEKGYELEESFPADRSTLRQLTKFAGSGGGLTINFDAMLLGERIFWDPATDTLTIKGTPPNLRDQLQRRTSGGN" ["CCO-BAC-NUCLEOID"] ["CCO-CYTOSOL", "CCO-BAC-NUCLEOID"] 1 [] {} 0 "EG12049-MONOMER" "lipopolysaccharide signal transducer LapC" ["LapC", "PbgA", "YejN", "YejM", "lipopolysaccharide assembly protein C"] "MVTHRQRYREKVSQMVSWGHWFALFNILLSLVIGSRYLFIADWPTTLAGRIYSYVSIIGHFSFLVFATYLLILFPLTFIVGSQRLMRFLSVILATAGMTLLLIDSEVFTRFHLHLNPIVWQLVINPDENEMARDWQLMFISVPVILLLELVFATWSWQKLRSLTRRRRFARPLAAFLFIAFIASHVVYIWADANFYRPITMQRANLPLSYPMTARRFLEKHGLLDAQEYQRRLIEQGNPDAVSVQYPLSELRYRDMGTGQNVLLITVDGLNYSRFEKQMPALAGFAEQNISFTRHMSSGNTTDNGIFGLFYGISPSYMDGILSTRTPAALITALNQQGYQLGLFSSDGFTSPLYRQALLSDFSMPSVRTQSDEQTATQWINWLGRYAQEDNRWFSWVSFNGTNIDDSNQQAFARKYSRAAGNVDDQINRVLNALRDSGKLDNTVVIITAGRGIPLSEEEETFDWSHGHLQVPLVIHWPGTPAQRINALTDHTDLMTTLMQRLLHVSTPASEYSQGQDLFNPQRRHYWVTAADNDTLAITTPKKTLVLNNNGKYRTYNLRGERVKDEKPQLSLLLQVLTDEKRFIAN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG12051-MONOMER" "adhesin-like autotransporter YejO" ["YejO"] "MHQSGSVSLCRSAISVLVATALYSPIALASTVEYGETVDGVVLEKDIQLVYGTANNTKINPGGEQHIKEFGVSNNTEINGGYQYIEMNGAAEYSVLNDGYQIVQMGGAANQTTLNNGVLQVYGAANDTTIKGGRLIVEKDGGAVFVAIEKGGLLEVKEGGFAFAVDQKAGGAIKTTTRAMEVFGTNRLGQFDIKNGIANNMLLENGGSLRVEENDFAYNTTVDSGGLLEVMDGGTVTGVDKKAGGKLIVSTNALEVSGPNSKGQFSIKDGVSKNYELDDGSGLIVMEDTQAIDTILDKHATMQSLGKDTGTKVQANAVYDLGRSYQNGSITYSSKAISENMVINNGRANVWAGTMVNVSVRGNDGILEVMKPQINYAPAMLVGKVVVSEGASFRTHGAVDTSKADVSLENSVWTIIADITTTNQNTLLNLANLAMSDANVIMMDEPVTRSSVTASAENFITLTTNTLSGNGNFYMRTDMANHQSDQLNVTGQATGDFKIFVTDTGASPAAGDSLTLVTTGGGDAAFTLGNAGGVVDIGTYEYTLLDNGNHSWSLAENRAQITPSTTDVLNMAAAQPLVFDAELDTVRERLGSVKGVSYDTAMWSSAINTRNNVTTDAGAGFEQTLTGLTLGIDSRFSREESSTIRGLIFGYSHSDIGFDRGGKGNIDSYTLGAYAGWEHQNGAYVDGVVKVDRFANTIHGKMSNGATAFGDYNSNGAGAHVESGFRWVDGLWSVRPYLAFTGFTTDGQDYTLSNGMRADVGNTRILRAEAGTAVSYHMDLQNGTTLEPWLKAAVRQEYADSNQVKVNDDGKFNNDVAGTSGVYQAGIRSSFTPTLSGHLSVSYGNGAGVESPWNTQAGVVWTF" [] ["CCO-EXTRACELLULAR"] 0 [] {} 0 +"EG12051-MONOMER" "adhesin-like autotransporter YejO" ["YejO"] "MHQSGSVSLCRSAISVLVATALYSPIALASTVEYGETVDGVVLEKDIQLVYGTANNTKINPGGEQHIKEFGVSNNTEINGGYQYIEMNGAAEYSVLNDGYQIVQMGGAANQTTLNNGVLQVYGAANDTTIKGGRLIVEKDGGAVFVAIEKGGLLEVKEGGFAFAVDQKAGGAIKTTTRAMEVFGTNRLGQFDIKNGIANNMLLENGGSLRVEENDFAYNTTVDSGGLLEVMDGGTVTGVDKKAGGKLIVSTNALEVSGPNSKGQFSIKDGVSKNYELDDGSGLIVMEDTQAIDTILDKHATMQSLGKDTGTKVQANAVYDLGRSYQNGSITYSSKAISENMVINNGRANVWAGTMVNVSVRGNDGILEVMKPQINYAPAMLVGKVVVSEGASFRTHGAVDTSKADVSLENSVWTIIADITTTNQNTLLNLANLAMSDANVIMMDEPVTRSSVTASAENFITLTTNTLSGNGNFYMRTDMANHQSDQLNVTGQATGDFKIFVTDTGASPAAGDSLTLVTTGGGDAAFTLGNAGGVVDIGTYEYTLLDNGNHSWSLAENRAQITPSTTDVLNMAAAQPLVFDAELDTVRERLGSVKGVSYDTAMWSSAINTRNNVTTDAGAGFEQTLTGLTLGIDSRFSREESSTIRGLIFGYSHSDIGFDRGGKGNIDSYTLGAYAGWEHQNGAYVDGVVKVDRFANTIHGKMSNGATAFGDYNSNGAGAHVESGFRWVDGLWSVRPYLAFTGFTTDGQDYTLSNGMRADVGNTRILRAEAGTAVSYHMDLQNGTTLEPWLKAAVRQEYADSNQVKVNDDGKFNNDVAGTSGVYQAGIRSSFTPTLSGHLSVSYGNGAGVESPWNTQAGVVWTF" [] ["CCO-OUTER-MEM", "CCO-MEMBRANE", "CCO-EXTRACELLULAR"] 0 [] {} 0 "EG12052-MONOMER" "holocytochrome c synthase CcmH component" ["YejP", "cytochrome c maturation protein H", "CcmH", "thiol:disulfide oxidoreductase CcmH"] "MRFLLGVLMLMISGSALATIDVLQFKDEAQEQQFRQLTEELRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYGNFVTYDPPLTPLTVLLWVLPVVAIGIGGWVIYARSRRRVRVVPEAFPEQSVPEGKRAGYVVYLPGIVVALIVAGVSYYQTGNYQQVKIWQQATAQAPALLDRALDPKADPLNEEEMSRLALGMRTQLQKNPGDIEGWIMLGRVGMALGNASIATDAYATAYRLDPKNSDAALGYAEALTRSSDPNDNRLGGELLRQLVRTDHSNIRVLSMYAFNAFEQQRFGEAVAAWEMMLKLLPANDTRRAVIERSIAQAMQHLSPQESK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG12053-MONOMER" "thiol:disulfide oxidoreductase CcmG" ["YejQ", "cytochrome c maturation protein G", "DsbE", "CcmG"] "MKRKVLLIPLIIFLAIAAALLWQLARNAEGDDPTNLESALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYSKEAAQ" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 0 -"EG12054-MONOMER" "holocytochrome c synthase CcmF component" ["YejR", "CcmF", "cytochrome c heme lyase", "cytochrome c synthetase", "cytochrome c maturation protein F"] "MMPEIGNGLLCLALGIALLLSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNAFVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLDIVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESLLLANNVLLVAAMLVVLLGTLLPLVHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRKIRNLLIIAFISTLVLSLLLPWLFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKTTFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPNWRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAWAVRLYYKPFVRWIWAGGLMMALGGLLCLFDPRYRKRVSPQKTAPEAV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"Heme-b": 1} 1 +"EG12054-MONOMER" "holocytochrome c synthase CcmF component" ["YejR", "CcmF", "cytochrome c heme lyase", "cytochrome c maturation protein F"] "MMPEIGNGLLCLALGIALLLSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNAFVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLDIVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESLLLANNVLLVAAMLVVLLGTLLPLVHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRKIRNLLIIAFISTLVLSLLLPWLFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKTTFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPNWRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAWAVRLYYKPFVRWIWAGGLMMALGGLLCLFDPRYRKRVSPQKTAPEAV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"Heme-b": 1} 1 "EG12069-MONOMER" null ["YojH", "Mqo"] "MKKVTAMLFSMAVGLNAVSMAAKAKASEEQETDVLLIGGGIMSATLGTYLRELEPEWSMTMVERLEGVAQESSNGWNNAGTGHSALMELNYTPQNADGSISIEKAVAINEAFQISRQFWAHQVERGVLRTPRSFINTVPHMSFVWGEDNVNFLRARYAALQQSSLFRGMRYSEDHAQIKEWAPLVMEGRDPQQKVAATRTEIGTDVNYGEITRQLIASLQKKSNFSLQLSSEVRALKRNDDNTWTVTVADLKNGTAQNIRAKFVFIGAGGAALKLLQESGIPEAKDYAGFPVGGQFLVSENPDVVNHHLAKVYGKASVGAPPMSVPHIDTRVLDGKRVVLFGPFATFSTKFLKNGSLWDLMSSTTTSNVMPMMHVGLDNFDLVKYLVSQVMLSEEDRFEALKEYYPQAKKEDWRLWQAGQRVQIIKRDAEKGGVLRLGTEVVSDQQGTIAALLGASPGASTAAPIMLNLLEKVFGDRVSSPQWQATLKAIVPSYGRKLNGDVAATERELQYTSEVLGLNYDKPQAADSTPKPQLKPQPVQKEVADIAL" ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12073-MONOMER" "FAD:protein FMN transferase" ["YojK", "YojL", "ApbE", "Ftp", "flavin transferase"] "MEISFTRVALLAAALFFVGCDQKPQPAKTHATEVTVLEGKTMGTFWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSALMRFNDSQSLSPWPVSEAMADIVTTSLRIGAKTDGAMDITVGPLVNLWGFGPEQQPVQIPSQEQIDAMKAKTGLQHLTVINQSHQQYLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSRGMNGEGLPWRVAIQKPTDKENAVQAVVDINGHGISTSGSYRNYYELDGKRLSHVIDPQTGRPIEHNLVSVTVIAPTALEADAWDTGLMVLGPEKAKEVVRREGLAVYMITKEGDSFKTWMSPQFKSFLVSEKN" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {"MG+2": 1} 0 +"EG12073-MONOMER" "FAD:protein FMN transferase" ["YojK", "YojL", "ApbE", "Ftp", "flavin transferase"] "MEISFTRVALLAAALFFVGCDQKPQPAKTHATEVTVLEGKTMGTFWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSALMRFNDSQSLSPWPVSEAMADIVTTSLRIGAKTDGAMDITVGPLVNLWGFGPEQQPVQIPSQEQIDAMKAKTGLQHLTVINQSHQQYLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSRGMNGEGLPWRVAIQKPTDKENAVQAVVDINGHGISTSGSYRNYYELDGKRLSHVIDPQTGRPIEHNLVSVTVIAPTALEADAWDTGLMVLGPEKAKEVVRREGLAVYMITKEGDSFKTWMSPQFKSFLVSEKN" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {"MG+2": 1} 1 "EG12080-MONOMER" "RecA inhibitor RecX" ["RecX", "OraA", "regulatory protein RecX; inhibitor of RecA"] "MTESTSRRPAYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGISREATEKAMRECDIDWCALARDQATRKYGEPLPTVFSEKVKIQRFLLYRGYLMEDIQEIWRNFAD" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12081-MONOMER" "prepilin-type N-terminal cleavage/methylation domain-containing protein PpdA" ["PpdA"] "MKTQRGYTLIETLVAMLILVMLSASGLYGWQYWQQSQRLWQTASQARDYLLYLREDANWHNRDHSISVIREGTLWCLVSSAAGANTCHGSSPLVFVPRWPEVEMSDLTPSLAFFGLRNTAWAGHIRFKNSTGEWWLVVSPWGRLRLCQQGETEGCL" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 "EG12094-MONOMER" "DNA-binding transcriptional dual regulator SgrR" ["YabN", "SgrR"] "MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNSTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLKIKEIDYDQWHTGEIESDIWLNSANFTLPLDFSVFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVASKAMVPLLHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP" [] ["CCO-PERI-BAC", "CCO-CYTOSOL"] 0 [] {} 0 @@ -1430,12 +1430,12 @@ "EG12155-MONOMER" "Rac prophage; inhibitor of FtsZ" ["YdaD", "Kil", "KilR", "killing protein KilR"] "MIAHHFGTDEIPRQCVTPGDYVLHEGRTYIASANNIKKRKLYIRNLTTKTFITDRMIKVFLGRDGLPVKAESW" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12158-MONOMER" "nucleoid-associated protein RdgC" ["YaiD", "RdgC"] "MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQR" ["CCO-CYTOSOL", "CCO-BAC-NUCLEOID"] ["CCO-CYTOSOL", "CCO-BAC-NUCLEOID"] 0 [] {} 0 "EG12159-MONOMER" "nucleoside phosphorylase PpnP" ["PpnP", "YaiE"] "MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEEMTVISGALNVLLPDATDWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"EG12161-MONOMER" "putative porin domain-containing protein EaeH" ["EaeH", "attaching and effacing protein homolog, pathogenesis factor"] "MSHYKTGHKQPRFRYSVLARCVAWANISVQVLFPLAVTFTPVMAARAQHAVQPRLSMGNTTVTADNNVEKNVASFAANAGTFLSSQPDSDATRNFITGMATAKANQEIQEWLGKYGTARVKLNVDKDFSLKDSSLEMLYPIYDTPTNMLFTQGAIHRTDDRTQSNIGFGWRHFSGNDWMAGVNTFIDHDLSRSHTRIGVGAEYWRDYLKLSANGYIRASGWKKSPDIEDYQERPANGWDIRAEGYLPAWPQLGASLMYEQYYGDEVGLFGKDKRQKDPHAISAEVTYTPVPLTQQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"EG12161-MONOMER" "putative porin domain-containing protein EaeH" ["EaeH", "attaching and effacing protein homolog, pathogenesis factor"] "MSHYKTGHKQPRFRYSVLARCVAWANISVQVLFPLAVTFTPVMAARAQHAVQPRLSMGNTTVTADNNVEKNVASFAANAGTFLSSQPDSDATRNFITGMATAKANQEIQEWLGKYGTARVKLNVDKDFSLKDSSLEMLYPIYDTPTNMLFTQGAIHRTDDRTQSNIGFGWRHFSGNDWMAGVNTFIDHDLSRSHTRIGVGAEYWRDYLKLSANGYIRASGWKKSPDIEDYQERPANGWDIRAEGYLPAWPQLGASLMYEQYYGDEVGLFGKDKRQKDPHAISAEVTYTPVPLTQQ" [] ["CCO-OUTER-MEM", "CCO-CYTOSOL"] 0 [] {} 0 "EG12163-MONOMER" "16S rRNA m5C967 methyltransferase" ["YhdB", "RsmB", "Fmv", "Fmu", "RrmB", "Sun"] "MKKQRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYPEQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIKK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12165-MONOMER" "chromosome partitioning protein MukF" ["KicB", "MukF", "Ca2+-binding protein involved in chromosome partitioning"] "MSEFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREFSTLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIRTAIDMDKNRVFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALRDEEVTGELPEDLEYEEFNEIREQLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQYPRARHFDVARIVIDQAVRLGVAQADFTGLPAKWQPINDYGAKVQAHVIDKY" [] ["CCO-BAC-NUCLEOID", "CCO-CYTOSOL"] 0 [] {} 1 "EG12166-MONOMER" "envelope biogenesis factor" ["ElyC", "YcbC"] "MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTGKIFISIGWLALLLLSLQPVADRLLRPIESTYPTWNNSQKVDYIVVLGGGYTWNPQWAPSSNLINNSLPRLNEGIRLWRENPGSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLDLPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPLNPWERAIPSPVWLMHSDRVGYETLGRIWQWLKGSSGEPRQE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG12167-MONOMER" "tRNA cmo5U34 methyltransferase" ["CmoM", "YcbD", "SmtA"] "MQDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPAQVYLWLEEAGWQIMGKTGVRVFHDYLREKHQQRDCYEALLELETRYCRQEPYITLGRYIHVTARKPQSKDKV" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12169-MONOMER" "cytochrome c maturation protein D" ["YojM", "heme trafficking system protein D"] "MTPAFASWNEFFAMGGYAFFVWLAVVMTVIPLVVLVVHSVMQHRAILRGVAQQRAREARLRAAQQQEAA" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"EG12167-MONOMER" "tRNA cmo5U34 methyltransferase" ["CmoM", "YcbD", "SmtA"] "MQDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPAQVYLWLEEAGWQIMGKTGVRVFHDYLREKHQQRDCYEALLELETRYCRQEPYITLGRYIHVTARKPQSKDKV" [] ["CCO-CYTOSOL"] 0 [] {} 1 +"EG12169-MONOMER" "cytochrome c maturation protein D" ["YojM"] "MTPAFASWNEFFAMGGYAFFVWLAVVMTVIPLVVLVVHSVMQHRAILRGVAQQRAREARLRAAQQQEAA" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG12171-MONOMER" "DUF3029 domain-containing protein YjjI" ["YjjH", "YjjI"] "MPTSHENALQQRCQQIVTSPVLSPEQKRHFLALEAENNLPYPQLPAEARRALDEGVICDMFEGHAPYKPRYVLPDYARFLANGSEWLELEGAKDLDDALSLLTILYHHVPSVTSMPVYLGQLDALLQPYVRILTQDEIDVRIKRFWRYLDRTLPDAFMHANIGPSDSPITRAILRADAELKQVSPNLTFIYDPEITPDDLLLEVAKNICECSKPHIANGPVHDKIFTKGGYGIVSCYNSLPLAGGGSTLVRLNLKAIAERSESLDDFFTRTLPHYCQQQIAIIDARCEFLYQQSHFFENSFLVKEGLINPERFVPMFGMYGLAEAVNLLCEKEGIAARYGKEAAANEVGYRISAQLAEFVANTPVKYGWQKRAMLHAQSGISSDIGTTPGARLPYGDEPDPITHLQTVAPHHAYYYSGISDILTLDETIKRNPQALVQLCLGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYRAEGSRTNTTWLGEEAARNTRILERQPRVISHEQQMRFSQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12172-MONOMER" "purine nucleoside phosphoramidase" ["YcfF", "HinT"] "MAEETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPLGPMLAHKGL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG12173-MONOMER" "type II secretion system protein GspM" ["HopZ", "GspM", "PshM"] "MIKSWWAEKSTSEKQIVAALAVLSLGVFCWLGVIKPIDTYIAEHQSHAQKIKKDIKWMQDQASTHGLLGHPALTQPIKNILLEEAKRENLAITLENGPDNTLTIHPVTAPLENVSRWLTTAQVTYGIVIEDLQFTLAGNEEITLRHLSFREQQ" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 @@ -1566,7 +1566,7 @@ "EG12365-MONOMER" "putative phosphoribulokinase" ["YhfF", "PrkB"] "MSAKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNLHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFIEYGQSGKGKSRKYLHTYDEAVPWNQVPGTFTPWQPLPEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEWIQKLIRDTSERGHSREAVMDSVVRSMEDYINYITPQFSRTHLNFQRVPTVDTSNPFAAKGIPSLDESFVVIHFRNLEGIDFPWLLAMLQGSFISHINTLVVPGGKMGLAMELIMLPLVQRLMEGKKIE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12366-MONOMER" "16S rRNA m3U1498 methyltransferase" ["YggJ", "RsmE"] "MRIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSVEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINTLPLPVERVRLLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTALTAITALQVRFGDLG" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG12370-MONOMER" "e14 prophage; putative integrase" ["YcfI", "IntE"] "MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRYHDDRGKGWSKVAL" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12371-MONOMER" "lipoprotein NlpI" ["YhbM", "NlpI"] "MKPFLRWCFVATALTLAGCSNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 +"EG12371-MONOMER" "lipoprotein NlpI" ["YhbM", "NlpI"] "MKPFLRWCFVATALTLAGCSNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ" [] ["CCO-OUTER-MEM", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 "EG12372-MONOMER" "flap endonuclease" ["YgdG", "ExoIX", "Xni", "Exo"] "MAVHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIMHSQPTHAVAVFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKKLETHKEMAFLCRDIARLQTDLHIDGNLQQLRLVR" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1, "K+": 1} 0 "EG12373-MONOMER" "nucleotide 5'-monophosphate nucleosidase" ["PpnN", "YgdH"] "MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFENFDINVLRRERGVKLELINPPEEAFVDGRIIRALQANLFAVLRDILFVYGQIHNTVRFPNLNLDNSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSINENEYLYARRVGNQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPANKDQVLPLILTGPKESADYFRVLDEFVVHTLGENARRHYRIIIDDAAEVARQMKKSMPLVKENRRDTGDAYSFNWSMRIAPDLQMPFEPSHENMANLKLYPDQPVEVLAADLRRAFSGIVAGNVKEVGIRAIEEFGPYKINGDKEIMRRMDDLLQGFVAQHRMKLPGSAYIPCYEICT" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG12374-MONOMER" "DUF2559 domain-containing protein YhfG" ["FicA", "YhfG"] "MKKLTDKQKSRLWELQRNRNFQASRRLEGVEMPLVTLTAAEALARLEELRSHYER" [] [] 0 [] {} 1 @@ -1645,7 +1645,7 @@ "EG12713-MONOMER" "amino acid exporter YddG" ["YddG"] "MTRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLSGLLLIFTVGFPRIRQIPKGYLLAGSLLFVSYEICLALSLGYAATHHQAIEVGMVNYLWPSLTILFAILFNGQKTNWLIVPGLLLALVGVCWVLGGDNGLHYDEIINNITTSPLSYFLAFIGAFIWAAYCTVTNKYARGFNGITVFVLLTGASLWVYYFLTPQPEMIFSTPVMIKLISAAFTLGFAYAAWNVGILHGNVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGALMVCGGSLLCWLATRRG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12717-MONOMER" "stationary phase mismatch/uracil DNA glycosylase" ["YgjF", "Mug", "dsUDG"] "MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQAGFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQANEVSKQELHAGGRKLIEKIEDYQPQALAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELDQALVVRGR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12794-MONOMER" "ribosome assembly factor YhbY" ["YhbY"] "MNLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPTKERKISLPR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12799-MONOMER" "intermembrane phospholipid transport system, substrate binding protein MlaD" ["YrbD", "MlaD"] "MQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTEPTYTLYATFDNIGGLKARSPVSIGGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSLSIRTSGLLGEQYLALNVGFEDPELGTAILKDGDTIQDTKSAMVLEDLIGQFLYGSKGDDNKNSGDAPAAAPGNNETTEPVGTTK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"EG12799-MONOMER" "intermembrane phospholipid transport system, substrate binding protein MlaD" ["YrbD", "MlaD"] "MQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTEPTYTLYATFDNIGGLKARSPVSIGGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSLSIRTSGLLGEQYLALNVGFEDPELGTAILKDGDTIQDTKSAMVLEDLIGQFLYGSKGDDNKNSGDAPAAAPGNNETTEPVGTTK" ["CCO-PM-BAC-NEG"] ["CCO-EXTRACELLULAR", "CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG12830-MONOMER" "DUF2496 domain-containing protein YbaM" ["YbaM", "small protein involved in the cell envelope stress response"] "MSLENAPDDVKLAVDLIVLLEENQIPASTVLRALDIVKRDYEKKLTRDDEAEK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12842-MONOMER" "DUF1418 domain-containing protein YbjC" ["YbjC"] "MRAIGKLPKGVLILEFIGMMLLAVALLSVSDSLSLPEPFSRPEVQILMIFLGVLLMLPAAVVVILQVAKRLAPQLMNRPPQYSRSEREKDNDANH" ["CCO-MEMBRANE"] [] 0 [] {} 0 "EG12843-MONOMER" "DUF454 domain-containing inner membrane protein YbaN" ["YbaN"] "MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDEKQEKH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -1756,7 +1756,7 @@ "FRUCTBISALD-CLASSII-MONOMER" "fructose-bisphosphate aldolase class II" ["Fda", "Ald", "FbaA", "Fba"] "MSKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKPGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAIDVL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"ZN+2": 2} 1 "FRVA-MONOMER" "putative PTS enzyme IIA component FrvA" ["FrvA", "YiiK"] "MAALTASCIDLNIQGNGAYSVLKQLATIALQNGFITDSHQFLQTLLLREKMHSTGFGSGVAVPHGKSACVKQPFVLFARKAQAIDWKASDGEDVNCWICLGVPQSGEEDQVKIIGTLCRKIIHKEFIHQLQQGDTDQVLALLNQTLSS" [] ["CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 1 "FRVB-MONOMER" "putative PTS enzyme IIBC component FrvB" ["FrvB", "YiiJ"] "MESSLRIVAITNCPAGIAHTYMVAEALEQKARSLGHTIKVETQGSSGVENRLSSEEIAAADYVILATGRGLSGDDRARFAGKKVYEIAISQALKNIDQIFSELPTNSQLFAADSGVKLGKQEVQSGSVMSHLMAGVSAALPFVIGGGILVALANMLVQFGLPYTDMSKGAPSFTWVVESIGYLGFTFMIPIMGAYIASSIADKPAFAPAFLVCYLANDKALLGTQSGAGFLGAVVLGLAIGYFVFWFRKVRLGKALQPLLGSMLIPFVTLLVFGVLTYYVIGPVMSDLMGGLLHFLNTIPPSMKFAAAFLVGAMLAFDMGGPINKTAWFFCFSLLEKHIYDWYAIVGVVALMPPVAAGLATFIAPKLFTRQEKEAASSAIVVGATVATEPAIPYALAAPLPMITANTLAGGITGVLVIAFGIKRLAPGLGIFDPLIGLMSPVGSFYLVLAIGLALNISFIIVLKGLWLRRKAKAAQQELVHEH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 -"FRWB-MONOMER" "putative PTS enzyme IIB component FrwB" ["YijK", "EIIBfrw", "Enzyme IIBfrw"] "MTKIIAVTACPSGVAHTYMAAEALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDIGIKFEERFAGKTIVRVNISDAVKRADAIMSKIEAHLAQTA" [] ["CCO-CYTOSOL"] 0 [] {} 1 +"FRWB-MONOMER" "putative PTS enzyme IIB component FrwB" ["YijK", "EIIBfrw", "Enzyme IIBfrw"] "MTKIIAVTACPSGVAHTYMAAEALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDIGIKFEERFAGKTIVRVNISDAVKRADAIMSKIEAHLAQTA" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 "FRWC-MONOMER" "putative PTS enzyme IIC component FrwC" ["YijJ", "EIICfrw", "Enzyme IICfrw"] "MNELVQILKNTRQHLMTGVSHMIPFVVSGGILLAVSVMLYGKGAVPDAVADPNLKKLFDIGVAGLTLMVPFLAAYIGYSIAERSALAPCAIGAWVGNSFGAGFFGALIAGIIGGIVVHYLKKIPVHKVLRSVMPIFIIPIVGTLITAGIMMWGLGEPVGALTNSLTQWLQGMQQGSIVMLAVIMGLMLAFDMGGPVNKVAYAFMLICVAQGVYTVVAIAAVGICIPPLGMGLATLIGRKNFSAEERETGKAALVMGCVGVTEGAIPFAAADPLRVIPSIMVGSVCGAVTAALVGAQCYAGWGGLIVLPVVEGKLGYIAAVAVGAVVTAVCVNVLKSLARKNGSSTDEKEDDLDLDFEIN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "FSR-MONOMER" null ["Fsr"] "MAMSEQPQPVAGAAASTTKARTSFGILGAISLSHLLNDMIQSLILAIYPLLQSEFSLTFMQIGMITLTFQLASSLLQPVVGYWTDKYPMPWSLPIGMCFTLSGLVLLALAGSFGAVLLAAALVGTGSSVFHPESSRVARMASGGRHGLAQSIFQVGGNFGSSLGPLLAAVIIAPYGKGNVAWFVLAALLAIVVLAQISRWYSAQHRMNKGKPKATIINPLPRNKVVLAVSILLILIFSKYFYMASISSYYTFYLMQKFGLSIQNAQLHLFAFLFAVAAGTVIGGPVGDKIGRKYVIWGSILGVAPFTLILPYASLHWTGVLTVIIGFILASAFSAILVYAQELLPGRIGMVSGLFFGFAFGMGGLGAAVLGLIADHTSIELVYKICAFLPLLGMLTIFLPDNRHKD" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "FTSE-MONOMER" "cell division protein FtsE" ["FtsE"] "MIRFEHVSKAYLGGRQALQGVTFHMQPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDINLISRRSYRMLTLSDGHLHGGVGHE" ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 @@ -1807,7 +1807,7 @@ "G6098-MONOMER" "uncharacterized protein YaeQ" ["YaeQ"] "MALKATIYKATVNVADLDRNQFLDASLTLARHPSETQERMMLRLLAWLKYADERLQFTRGLCADDEPEAWLRNDHLGIDLWIELGLPDERRIKKACTQAAEVALFTYNSRAAQIWWQQNQSKCVQFANLSVWYLDDEQLAKVSAFADRTMTLQATIQDGVIWLSDDKNNLEVNLTAWQQPS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6100-MONOMER" "putative S-adenosyl-L-methionine-dependent methyltransferase" ["YafS"] "MKPARVPQTVVAPDCWGDLPWGKLYRKALERQLNPWFTKMYGFHLLKIGNLSAEINCEACAVSHQVNVSAQGMPVQVQADPLHLPFADKSVDVCLLAHTLPWCTDPHRLLREADRVLIDDGWLVISGFNPISFMGLRKLVPVLRKTSPYNSRMFTLMRQLDWLSLLNFEVLHASRFHVLPWNKHGGKLLNAHIPALGCLQLIVARKRTIPLTLNPMKQSKNKPRIRQAVGATRQCRKPQA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6101-MONOMER" "lipoprotein YafT" ["YafT"] "MNSKKLCCICVLFSLLAGCASESSIDEKKKKAQVTQSNINKNTPQQLTDKDLFGNETTLAVSEEDIQAALDGDEFRVPLNSPVILVQSGNRAPETIMQEEMRKYYTVSTFSGIPDRQKPLTCNKNKDKNENEDVASAENMNWMQALRFVAAKGHQKAIIVYQDMLQTGKYDSALKSTVWSDYKNDKLTDAISLRYLVRFTLVDVATGEWATWSPVNYEYKVLPPLPDKNEASTTDMTEQQIMQLKQKTYKAMVKDLVNRYQ" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 0 -"G6102-MONOMER" "putative inner membrane protein" ["YafU"] "MSSERDLVNFLGDFSMDVAKAVIAGGVATAIGSLASFACVSFGFPVILVGGAILLTGIVCTVVLNEIDAQCHLSEKLKYAIRDGLKRQQELDKWKRENMTPFMYVLNTPPVI" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6102-MONOMER" "putative inner membrane protein" ["YafU"] "MSSERDLVNFLGDFSMDVAKAVIAGGVATAIGSLASFACVSFGFPVILVGGAILLTGIVCTVVLNEIDAQCHLSEKLKYAIRDGLKRQQELDKWKRENMTPFMYVLNTPPVI" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6103-MONOMER" "2-oxoglutaramate amidase" ["YafV"] "MPGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEMFTSGFAMEAAASSLAQDDVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTVHFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLALYVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIATADAHQATRIDAELSMAALREYREKFPAWQDADEFRLW" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6104-MONOMER" "periplasmic chaperone, inhibitor of vertebrate C-type lysozyme" ["Ivy", "YkfE"] "MGRISSGGMMFKAITTVAALVIATSAMAQDDLTISSLAKGETTKAAFNQMVQGHKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEKSNQMTGLFSTIDEKTSQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "G6106-MONOMER" "D-sedoheptulose 7-phosphate isomerase" ["YafI", "TfrA", "GmhA", "LpcA"] "MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFSRYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPHFGYADRIQEIHIKVIHILIQLIEKEMVK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 @@ -1817,7 +1817,7 @@ "G6110-MONOMER" "antitoxin/DNA-binding transcriptional repressor DinJ" ["DinJ", "SosA", "DinJ antitoxin of YafQ-DinJ toxin-antitoxin system / DNA-binding transcriptional repressor"] "MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQSIKNSEAGIDVHKAKDADDLFDKLGI" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6111-MONOMER" "NlpC/P60 family protein YafL" ["YafL", "C40 family non-peptidase homologue"] "MSLPSIPSFVLSGLLLICLPFSSFASATTSHISFSYAARQRMQNRARLLKQYQTHLKKQASYIVEGNAESKRALRQHNREQIKQHPEWFPAPLKASDRRWQALAENNHFLSSDHLHNITEVAIHRLEQQLGKPYVWGGTRPDKGFDCSGLVFYAYNKILEAKLPRTANEMYHYRRATIVANNDLRRGDLLFFHIHSREIADHMGVYLGDGQFIESPRTGETIRISRLAEPFWQDHFLGARRILTEETIL" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 "G6112-MONOMER" "REP-associated tyrosine transposase" ["RayT", "YafM", "TnpAREP"] "MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRHAIIKVKRDRPFEINAWVVLPEHMHCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHAIRNTKDYRHHVDYIYINPVKHGWVKQVSDWPFSTFHRDVARGLYPIDWAGDVTDFSAGERIIS" [] [] 0 [] {} 0 -"G6113-MONOMER" "flagellar system protein, promoterless fragment" ["FhiA", "LfhA"] "MLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM" [] ["CCO-MEMBRANE"] 0 [] {} 0 +"G6113-MONOMER" "flagellar system protein, promoterless fragment" ["FhiA", "LfhA"] "MLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 "G6114-MONOMER" "flagellar system protein, promoterless fragment" ["MbhA", "LafU"] "MSKSERESIIAALHGQSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMVLTKSASDTLYQYFGQHGDKVVQPLVQKLDKQQVLSQRTR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6115-MONOMER" "DNA polymerase IV" ["DinB", "DinP", "Pol IV"] "MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "G6116-MONOMER" "antitoxin YafN" ["YafN", "antitoxin of the YafO-YafN toxin-antitoxin system"] "MHRILAEKSVNITELRKNPAKYFIDQPVAVLSNNRPAGYLLSASAFEALMDMLAEQEEKKPIKARFRPSAARLEEITRRAEQYLNDMTDDDFNDFKE" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -2037,7 +2037,7 @@ "G6418-MONOMER" null ["OpgE", "YbiP"] "MNLTLKESLVTRSRVFSPWTAFYFLQSLLINLGLGYPFSLLYTAAFTAILLLLWRTLPRVQKVLVGVSSLVAACYFPFAQAYGAPNFNTLLALHSTNMEESTEILTIFPWYSYLVGLFIFALGVIAIRRKKENEKARWNTFDSLCLVFSVATFFVAPVQNLAWGGVFKLKDTGYPVFRFAKDVIVNNNEVIEEQERMAKLSGMKDTWTVTAVKPKYQTYVVVIGESARRDALGAFGGHWDNTPFASSVNGLIFADYIAASGSTQKSLGLTLNRVVDGKPQFQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEVYFLKEGNFEADKNTKDEALLDMTAQVLAQEHSQPQLIVLHLMGSHPQACDRTQGKYETFVQSKETSCYLYTMTQTDDLLRKLYDQLRNSGSSFSLVYFSDHGLAFKERGKDVQYLAHDDKYQQNFQVPFMVISSDDKAHRVIKARRSANDFLGFFSQWTGIKAKEINIKYPFISEKKAGPIYITNFQLQKVDYNHLGTDIFDPKP" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6420-MONOMER" "DNA-binding transcriptional dual regulator MntR" ["MntR", "YbiQ"] "MSRRAGTPTAKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQESRERHQIVENFLLVLGVSPEIARRDAEGMEHHVSEETLDAFRLFTQKHGAK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6421-MONOMER" "putative transporter YbiR" ["YbiR"] "MSLPFLRTLQGDRFFQLLILVGIGLSFFVPFAPKSWPAAIDWHTIITLSGLMLLTKGVELSGYFDVLGRKMVRRFATERRLAMFMVLAAALLSTFLTNDVALFIVVPLTITLKRLCEIPVNRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFIAQMAPLAGAMMLTLLLLCWCCFPGKAMQYHTGVQTPEWKPRLVWSCLGLYIVFLTALEFKQELWGLVIVAAGFALLARRVVLSVDWTLLLVFMAMFIDVHLLTQLPALQGVLGNVSHLSEPGLWLTAIGLSQVISNVPSTILLLNYVPPSLLLVWAVNVGGFGLLPGSLANLIALRMANDRRIWWRFHLYSIPMLLWAALVGYVLLVILPAN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6422-MONOMER" "L,D-transpeptidase LdtB" ["LdtB", "YbiS"] "MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVITIPEGNTQPLEYFAAEYQMGLSNMMEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFEKVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKSVQTVTGQPDVDQVVLDEAIKNRSGMPVRLN" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 +"G6422-MONOMER" "L,D-transpeptidase LdtB" ["LdtB", "YbiS"] "MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVITIPEGNTQPLEYFAAEYQMGLSNMMEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFEKVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKSVQTVTGQPDVDQVVLDEAIKNRSGMPVRLN" ["CCO-PERI-BAC"] ["CCO-EXTRACELLULAR", "CCO-PERI-BAC"] 0 [] {} 0 "G6423-MONOMER" "putative ATP-binding protein YbiT" ["YbiT"] "MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEVKASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTVKWSENARIGYYAQDHEYEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRILEITPERVIDFSGNYEDYLRSKGIE" [] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6424-MONOMER" "DUF1479 domain-containing protein YbiU" ["YbiU"] "MASTFTSDTLPADHKAAIRQMKHALRAQLGDVQQIFNQLSDDIATRVAEINALKAQGDAVWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGWDQSMLDYLDRNRFDEVYKGPGDNFFGTLSASRPEIYPIYWSQAQMQARQSEEMANAQSFLNRLWTFESDGKQWFNPDVSVIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQRVFANVFNGNLAQYDPWHAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEAMAYVLLRPLLDDVPEDELCGVAPGRVLPVSEQWHPLLIEALTSIPKLEAGDSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYAHKVKAALEKGASPGDFPREDYETNWEGRFTLADLNIHGKRALGMDV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6425-MONOMER" "sugar phosphatase YbiV" ["YbiV", "HAD12"] "MSVKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTSPFNS" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 @@ -2157,7 +2157,7 @@ "G6568-MONOMER" "PF05728 family protein YcfP" ["YcfP", "UPF0227 protein YcfP"] "MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLISYSTRHPKHDMQHLLKEVDKMLQLNVDERPLICGVGLGGYWAERIGFLCDIRQVIFNPNLFPYENMEGKIDRPEEYADIATKCVTNFREKNRDRCLVILSRNDEALNSQRTSEELHHYYEIVWDEEQTHKFKNISPHLQRIKAFKTLG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6569-MONOMER" "DNA-binding transcriptional repressor ComR" ["ComR", "YcfQ"] "MATDSTQCVKKSRGRPKVFDRDAALDKAMKLFWQHGYEATSLADLVEATGAKAPTLYAEFTNKEGLFRAVLDRYIDRFAAKHEAQLFCEEKSVESALADYFAAIANCFTSKDTPAGCFMINNCTTLSPDSGDIANTLKSRHAMQERTLQQFLCQRQARGEIPPHCDVTHLAEFLNCIIQGMSISAREGASLEKLMQIAGTTLRLWPELVK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6570-MONOMER" "DUF1471 domain-containing multiple stress resistance outer membrane protein BhsA" ["ComC", "YcfR", "BhsA", "outer membrane protein involved in copper permeability, stress resistance and biofilm formation"] "MKNVKTLIAAAILSSMSFASFAAVEVQSTPEGQQKVGTISANAGTNLGSLEEQLAQKADEMGAKSFRITSVTGPNTLHGTAVIYK" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 -"G6571-MONOMER" "L,D-transpeptidase LdtC" ["LdtC", "YcfS"] "MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTANIRARYKAQGIELPAVVPAGLDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNIINTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNSAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL" [] ["CCO-PERI-BAC"] 0 [] {} 0 +"G6571-MONOMER" "L,D-transpeptidase LdtC" ["LdtC", "YcfS"] "MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTANIRARYKAQGIELPAVVPAGLDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNIINTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNSAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL" [] ["CCO-EXTRACELLULAR", "CCO-PERI-BAC"] 0 [] {} 0 "G6572-MONOMER" "inner membrane protein YcfT" ["YcfT"] "MKQKELWINQIKGLCICLVVIYHSVITFYPHLTTFQHPLSEVLSKCWIYFNLYLAPFRMPVFFFISGYLIRRYIDSVPWGNCLDKRIWNIFWVLALWGVVQWLALSALNQWLAPERDLSNASNAAYADSTGEFLHGMITASTSLWYLYALIVYFVVCKIFSRLALPLFALFVLLSVAVNFVPTPWWGMNSVIRNLPYYSLGAWFGATIMTCVKEVPLRRHLLMASLLTVLAVGAWLFTISLLLSLVSIVVIMKLFYQYEQRFGMRSTSLLNVIGSNTIAIYTTHRILVEIFSLTLLAQMNAARWSPQVELTLLLVYPFVSLFICTVAGLLVRKLSQRAFSDLLFSPPSLPAAVSYSR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6576-MONOMER" "N-acetyl-D-glucosamine kinase" ["YcfX", "NagK"] "MYYGFDIGGTKIALGVFDSGRQLQWEKRVPTPRDSYDAFLDAVCELVAEADQRFGCKGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLIFNGKPITGKSYITGEFGHMRLPVDALTMMGLDFPLRRCGCGQHGCIENYLSGRGFAWLYQHYYHQPLQAPEIIALYDQGDEQARAHVERYLDLLAVCLGNILTIVDPDLVVIGGGLSNFPAITTQLADRLPRHLLPVARVPRIERARHGDAGGMRGAAFLHLTD" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 "G6577-MONOMER" "protein-lysine deacetylase/desuccinylase/delipoylase" ["YcfY", "CobB", "CobB-L"] "MLSRRGHRLSRFRKNKRRLRERLRQRIFFRDKVVPEAMEKPRVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKLLKGLKAGSIA" [] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -2288,7 +2288,7 @@ "G6719-MONOMER" "phenylacetate-CoA ligase" ["PaaK"] "MITNTKLDPIETASVDELQALQTQRLKWTLKHAYENVPMYRRKFDAAGVHPDDFRELSDLRKFPCTTKQDLRDNYPFDTFAVPMEQVVRIHASSGTTGKPTVVGYTQNDIDNWANIVARSLRAAGGSPKDKIHVAYGYGLFTGGLGAHYGAERLGATVIPMSGGQTEKQAQLIRDFQPDMIMVTPSYCLNLIEELERQLGGDASGCSLRVGVFGAEPWTQAMRKEIERRLGITALDIYGLSEVMGPGVAMECLETTDGPTIWEDHFYPEIVNPHDGTPLADGEHGELLFTTLTKEALPVIRYRTRDLTRLLPGTARTMRRMDRISGRSDDMLIIRGVNVFPSQLEEEIVKFEHLSPHYQLEVNRRGHLDSLSVKVELKESSLTLTHEQRCQVCHQLRHRIKSMVGISTDVMIVNCGSIPRSEGKACRVFDLRNIVGA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6720-MONOMER" "DNA-binding transcriptional repressor PaaX" ["YdbY", "PaaX"] "MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLNIEQEALCQFIR" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6721-MONOMER" "2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase" ["YdbZ", "PaaY"] "MPIYQIDGLTPVVPEESFVHPTAVLIGDVILGKGVYVGPNASLRGDFGRIVVKDGANIQDNCVMHGFPEQDTVVGEDGHIGHSAILHGCIIRRNALVGMNAVVMDGAVIGENSIVGASAFVKAKAEMPANYLIVGSPAKAIRELSEQELAWKKQGTHEYQVLVTRCKQTLHQVEPLREIEPGRKRLVFDENLRPKQ" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G6722-MONOMER" "putative outer membrane protein, N-terminal fragment" ["YdbA_1", "YdbA"] "MQRKTLLSACIALALSGQGWAADITEVETTTGEKKNTNVTCPADPGKLSPEELKRLPSECSPLVEQNLMPWLSTGAAALITALAVVELNDDDDHHHRNNSPLPPTPPDDESDDTPVPPTPGGDEIIPDDPDDTPTPPKPVSFNNDVILDKTEKTLTIRDSVFTYTENADGTISLQDSNGRKATINLWQIDEANNTVALEGVSADGATKWQYNHNGELVITGDNATVNNNGKTTVDGKDSTGTEINGNNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVTDPESMGIQIDGDKAIVNNEGESTITNGGTGTQINGDDATANNNGKTTVDGKDSTGTEINGNNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVTDPESIGIQVDGDQAVVNNEGESAITNGGTGTQINGDDATANNNGKTTVDGKDSTGTEIAGNNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVTDPESIGIQIDGDQAIVNNEGESTITNGGTGTQINGNDATANNSGKTTVDGKDSTGTKIAGNIGIVNLDGSLTVTGGAHGVENIGDNGTVNNKGDIVVSDTGSIGVLINGEGATVSNTGDVNVSNEATGFSITTNSGKVSLAGSMQVGDFSTGVDLNGNNNSVTLAAKDLKVVGQKATGINVSGDANTVNITGNVLVDKDKTADNAAEYFFDPSVGINVYGSDNNVTLDGKLTVVSDSEVTSRQSNLFDGSAEKTSGLVVIGDGNTVNMNGGLELIGEKNALADGSQVTSLRTGYSYTSVIVVSGESSVYLNGDTTISGEFPLGFAGVIRVQDKALLEIGSGATLTMQDIDSFEHHGTRTPELTYADSGAKIVNKGTVEIQNLGFAFVTGENTTGINSGTISLLQNGKDPAPSPIVLLATNGGSATNAGTITGKVTEQHSVFNKYSTGTSNSFIFNNDVSSITGLVAQSNSTIINTDSGIIDLYGRGSVGMLAIADSTAENQGKITLDSMWVDANDTTAMRDIASNSAIDFGTGVGVGTDSYSGAGKNATAINQLGGVITIYNAGAGMAAYGASNTVINQGTINLEKNGNYDDSLAANTLVGMAVYEHGTAINDQTGVININVGTGQAFYNDGTGTIVNYGTICTFGVCQSGNEYNNTDDFTSLIYTGGDTITRSGETVTLNKSAAVTDKLAGNVVNSGTLSGDQITVSSGLLENTSGGIINNLVKLDKGAVIKNAGVMTNNVDVSGGILNNAGEMTAQITMNAGADSSLVNNTGTINKIVQNAGVFNNSGSVTGRMMSAGGVFNNQTDGAIMRGAALTGTAVANNEGTWNLGSSSEGNNTGMLEVNNNSAFNNRGEFILDNDKNAVHINQSGTLYNTGHMNISNSSHNGAVNMWGGNGRFINDGTIDVSAKSLVVSANNAGDQNAFFWNQDNGVINFDHDSASAVKVTHSNFIAQNDGIMNISGTGAVAMEGDKNAQLVNNGTINLGTAGTTDTGMIGMQLDANATADAVIENNGTINIFANDSFAFSVLGTVGHVVNNGTVVIADGVTGSGLIKQGDSINVEGMNGNNGNSSEVHYGDYTLPDVPKPNTVSVTSGSDEAGGSMNNLNGYVVGTNVNGSAGKLKVNNASMNGVEINTGFTAGTADTTVSFDNVVEGSNLTDADAITSTSVVWTAKGSTDASGNVDVTMSKNAYTDVATDASVNDIAKALDAGYTNNELFTSLNVGTTAELNSALKQVSGSQATTVFREARVLSNRFSMLADAAPKVGNGLAFNVVAKGDPRAELGNNTEYDMLALRKTIDLSESQTMSLEYGIARLDGDGAQKAGDNGVTGGYSQFFGLKHQMSFDNGMNWNNALRYDVHNLDSSRSIAFGNTNKTADTDVKQQYLEFRSEGAKTFEPSEGLKVTPYAGVKLRHTLEGGYQERNAGDFNLNMNSGSETAVDSIVGLKLDYAGKDGWSASATLEGGPNLSYAKSQRTASLAGAGSQHFNVDDGQKGGGINSLTSVGVKYSSKESSLNLDAYNWKEDGISDKGVMLNFKKTF" [] ["CCO-MEMBRANE"] 0 [] {} 0 +"G6722-MONOMER" "putative outer membrane protein, N-terminal fragment" ["YdbA_1", "YdbA"] "MQRKTLLSACIALALSGQGWAADITEVETTTGEKKNTNVTCPADPGKLSPEELKRLPSECSPLVEQNLMPWLSTGAAALITALAVVELNDDDDHHHRNNSPLPPTPPDDESDDTPVPPTPGGDEIIPDDPDDTPTPPKPVSFNNDVILDKTEKTLTIRDSVFTYTENADGTISLQDSNGRKATINLWQIDEANNTVALEGVSADGATKWQYNHNGELVITGDNATVNNNGKTTVDGKDSTGTEINGNNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVTDPESMGIQIDGDKAIVNNEGESTITNGGTGTQINGDDATANNNGKTTVDGKDSTGTEINGNNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVTDPESIGIQVDGDQAVVNNEGESAITNGGTGTQINGDDATANNNGKTTVDGKDSTGTEIAGNNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVTDPESIGIQIDGDQAIVNNEGESTITNGGTGTQINGNDATANNSGKTTVDGKDSTGTKIAGNIGIVNLDGSLTVTGGAHGVENIGDNGTVNNKGDIVVSDTGSIGVLINGEGATVSNTGDVNVSNEATGFSITTNSGKVSLAGSMQVGDFSTGVDLNGNNNSVTLAAKDLKVVGQKATGINVSGDANTVNITGNVLVDKDKTADNAAEYFFDPSVGINVYGSDNNVTLDGKLTVVSDSEVTSRQSNLFDGSAEKTSGLVVIGDGNTVNMNGGLELIGEKNALADGSQVTSLRTGYSYTSVIVVSGESSVYLNGDTTISGEFPLGFAGVIRVQDKALLEIGSGATLTMQDIDSFEHHGTRTPELTYADSGAKIVNKGTVEIQNLGFAFVTGENTTGINSGTISLLQNGKDPAPSPIVLLATNGGSATNAGTITGKVTEQHSVFNKYSTGTSNSFIFNNDVSSITGLVAQSNSTIINTDSGIIDLYGRGSVGMLAIADSTAENQGKITLDSMWVDANDTTAMRDIASNSAIDFGTGVGVGTDSYSGAGKNATAINQLGGVITIYNAGAGMAAYGASNTVINQGTINLEKNGNYDDSLAANTLVGMAVYEHGTAINDQTGVININVGTGQAFYNDGTGTIVNYGTICTFGVCQSGNEYNNTDDFTSLIYTGGDTITRSGETVTLNKSAAVTDKLAGNVVNSGTLSGDQITVSSGLLENTSGGIINNLVKLDKGAVIKNAGVMTNNVDVSGGILNNAGEMTAQITMNAGADSSLVNNTGTINKIVQNAGVFNNSGSVTGRMMSAGGVFNNQTDGAIMRGAALTGTAVANNEGTWNLGSSSEGNNTGMLEVNNNSAFNNRGEFILDNDKNAVHINQSGTLYNTGHMNISNSSHNGAVNMWGGNGRFINDGTIDVSAKSLVVSANNAGDQNAFFWNQDNGVINFDHDSASAVKVTHSNFIAQNDGIMNISGTGAVAMEGDKNAQLVNNGTINLGTAGTTDTGMIGMQLDANATADAVIENNGTINIFANDSFAFSVLGTVGHVVNNGTVVIADGVTGSGLIKQGDSINVEGMNGNNGNSSEVHYGDYTLPDVPKPNTVSVTSGSDEAGGSMNNLNGYVVGTNVNGSAGKLKVNNASMNGVEINTGFTAGTADTTVSFDNVVEGSNLTDADAITSTSVVWTAKGSTDASGNVDVTMSKNAYTDVATDASVNDIAKALDAGYTNNELFTSLNVGTTAELNSALKQVSGSQATTVFREARVLSNRFSMLADAAPKVGNGLAFNVVAKGDPRAELGNNTEYDMLALRKTIDLSESQTMSLEYGIARLDGDGAQKAGDNGVTGGYSQFFGLKHQMSFDNGMNWNNALRYDVHNLDSSRSIAFGNTNKTADTDVKQQYLEFRSEGAKTFEPSEGLKVTPYAGVKLRHTLEGGYQERNAGDFNLNMNSGSETAVDSIVGLKLDYAGKDGWSASATLEGGPNLSYAKSQRTASLAGAGSQHFNVDDGQKGGGINSLTSVGVKYSSKESSLNLDAYNWKEDGISDKGVMLNFKKTF" [] ["CCO-EXTRACELLULAR", "CCO-MEMBRANE"] 0 [] {} 0 "G6725-MONOMER" "IS30 transposase" ["Tra8-2", "InsI2"] "MRRTFTAEEKASVFELWKNGTGFSEIANILGSKPGTIFTMLRDTGGIKPHERKRAVAHLTLSEREEIRAGLSAKMSIRAIATALNRSPSTISREVQRNRGRRYYKAVDANNRANRMAKRPKPCLLDQNLPLRKLVLEKLEMKWSPEQISGWLRRTKPRQKTLRISPETIYKTLYFRSREALHHLNIQHLRRSHSLRHGRRHTRKGERGTINIVNGTPIHERSRNIDNRRSLGHWEGDLVSGTKNSHIATLVDRKSRYTIILRLRGKDSVSVNQALTDKFLSLPSELRKSLTWDRGMELARHLEFTVSTGVKVYFCDPQSPWQRGTNENTNGLIRQYFPKKTCLAQYTQHELDLVAAQLNNRPRKTLKFKTPKEIIERGVALTD" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6727-MONOMER" "CDP-alcohol phosphatidyltransferase domain-containing protein YnbA" ["YnbA"] "MTLYQIKPLFQSLLRPTMFWLYKHHVTANHITLAALALSLLTGLLLMLAAQPILFLLLPIVLFIRMALNALDGMLARECNQQTRLGAILNETGDVISDIALYLPFLFLPESNASLVILMLFCTILTEFCGLLAQTINGVRSYAGPFGKSDRALIFGLWGLAVAIYPQWMQWNNLLWSIASILLLWTAINRCRSVLLMSAEI" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6728-MONOMER" "putative CDP-diglyceride synthase" ["YnbB"] "MLEKSLATLFALLILATLINRFLLWRLPERKGGEVTLRIRTWWGIVICFSMVISGPRWMTLTFFALISFLALKEYCTLISVHFPRWLYWGIPLNYLLIGFNCFELFLLFIPLAGFLILATGQVLVGDPSGFLHTVSAIFWGWIMTVFALSHAAWLLMLPTTNIQGGALLVLFLLALTESNDIAQYLWGKSCGRRKVVPKVSPGKTLEGLMGGVITIMIASLIIGPLLTPLNTLQALLAGLLIGISGFCGDVVMSAIKRDIGVKDSGKLLPGHGGLLDRIDSLIFTAPVFFYFIRYCCY" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -2399,12 +2399,12 @@ "G6868-MONOMER" "putative oxidoreductase YdgJ" ["YdgJ"] "MSDNIRVGLIGYGYASKTFHAPLIAGTPGQELAVISSSDETKVKADWPTVTVVSEPKHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSLGRVLSVFHNRRWDSDFLTLKGLLAEGVLGEVAYFESHFDRFRPQVRDRWREQGGPGSGIWYDLAPHLLDQAITLFGLPVSMTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIVHGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRDGVLTRVEGEERVEETLLTVPGNYPAYYAAIRDALNGDGENPVPASQAIQVMELIELGIESAKHRATLCLA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6869-MONOMER" "H-NS- and StpA-binding protein" ["YdgT", "Cnu"] "MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQVPKSVWHYVQ" [] ["CCO-BAC-NUCLEOID", "CCO-CYTOSOL"] 0 [] {} 0 "G6870-MONOMER" "DUF2569 domain-containing inner membrane protein YdgK" ["RsxP", "YdgK"] "MTTTTPQRIGGWLLGPLAWLLVALLSTTLALLLYTAALSSPQTFQTLGGQALTTQILWGVSFITAIALWYYTLWLTIAFFKRRRCVPKHYIIWLLISVLLAVKAFAFSPVEDGIAVRQLLFTLLATALIVPYFKRSSRVKATFVNP" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6871-MONOMER" "SoxR [2Fe-2S] reducing system protein RsxA" ["YdgL", "RsxA"] "MTDYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLATTFVMTLASICAWLIDTWILIPLNLIYLRTLAFILVIAVVVQFTEMVVRKTSPVLYRLLGIFLPLITTNCAVLGVALLNINLGHNFLQSALYGFSAAVGFSLVMVLFAAIRERLAVADVPAPFRGNAIALITAGLMSLAFMGFSGLVKL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6872-MONOMER" "SoxR [2Fe-2S] reducing system protein RsxB" ["YdgM", "RsxB"] "MNAIWIAVAAVSLLGLAFGAILGYASRRFAVEDDPVVEKIDEILPQSQCGQCGYPGCRPYAEAISCNGEKINRCAPGGEAVMLKIAELLNVEPQPLDGEAQEITPARMVAVIDENNCIGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQPVAETPDSWKWDLNTIPVRIIPVEHHA" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {"CPD-7": 3} 0 -"G6873-MONOMER" "SoxR [2Fe-2S] reducing system protein RsxC" ["YdgN", "RsxC", "member of SoxR-reducing complex"] "MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIPRDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQGGGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSNDISLRVIPTKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKSAAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVADPRKTAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKREQQPANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAVPEEQVDPRKAAVAAAIARAQAKKAAQQKVVNED" [] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {"CPD-7": 2} 0 -"G6874-MONOMER" "SoxR [2Fe-2S] reducing system protein RsxD" ["YdgO", "RsxD"] "MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTLVQILLASVSALLAEALVLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQVIFSGHTASGGDMNTLRLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGAGWQWVNLAWLAGGVWLLWQKAIRWHIPLSFLVTLALCAMLGWLFSPETLAAPQIHLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHRKG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6875-MONOMER" "SoxR [2Fe-2S] reducing system protein RsxG" ["YdgP", "RsxG"] "MLKTIRKHGITLALFAAGSTGLTAAINQMTKTTIAEQASLQQKALFDQVLPAERYNNALAQSCYLVTAPELGKGEHRVYIAKQDDKPVAAVLEATAPDGYSGAIQLLVGADFNGTVLGTRVTEHHETPGLGDKIELRLSDWITHFAGKKISGADDAHWAVKKDGGDFDQFTGATITPRAVVNAVKRAGLYAQTLPAQLSQLPACGE" ["CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 -"G6876-MONOMER" "SoxR [2Fe-2S] reducing system protein RsxE" ["YdgQ", "RsxE"] "MSEIKDVIVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLATTLVLTLTNLTISTLRHWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAFAAKKGPALSALDGFSIGMGATCAMFVLGSLREIIGNGTLFDGADALLGSWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAGKYLIDERMKKRRAEAAAERALPNGETGNV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6871-MONOMER" "SoxR [2Fe-2S] reducing system protein RsxA" ["YdgL", "RsxA"] "MTDYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLATTFVMTLASICAWLIDTWILIPLNLIYLRTLAFILVIAVVVQFTEMVVRKTSPVLYRLLGIFLPLITTNCAVLGVALLNINLGHNFLQSALYGFSAAVGFSLVMVLFAAIRERLAVADVPAPFRGNAIALITAGLMSLAFMGFSGLVKL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"G6872-MONOMER" "SoxR [2Fe-2S] reducing system protein RsxB" ["YdgM", "RsxB"] "MNAIWIAVAAVSLLGLAFGAILGYASRRFAVEDDPVVEKIDEILPQSQCGQCGYPGCRPYAEAISCNGEKINRCAPGGEAVMLKIAELLNVEPQPLDGEAQEITPARMVAVIDENNCIGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQPVAETPDSWKWDLNTIPVRIIPVEHHA" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {"CPD-7": 3} 1 +"G6873-MONOMER" "SoxR [2Fe-2S] reducing system protein RsxC" ["YdgN", "RsxC", "member of SoxR-reducing complex"] "MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIPRDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQGGGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSNDISLRVIPTKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKSAAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVADPRKTAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKREQQPANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAVPEEQVDPRKAAVAAAIARAQAKKAAQQKVVNED" [] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {"CPD-7": 2} 1 +"G6874-MONOMER" "SoxR [2Fe-2S] reducing system protein RsxD" ["YdgO", "RsxD"] "MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTLVQILLASVSALLAEALVLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQVIFSGHTASGGDMNTLRLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGAGWQWVNLAWLAGGVWLLWQKAIRWHIPLSFLVTLALCAMLGWLFSPETLAAPQIHLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHRKG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"G6875-MONOMER" "SoxR [2Fe-2S] reducing system flavoprotein RsxG" ["YdgP", "RsxG"] "MLKTIRKHGITLALFAAGSTGLTAAINQMTKTTIAEQASLQQKALFDQVLPAERYNNALAQSCYLVTAPELGKGEHRVYIAKQDDKPVAAVLEATAPDGYSGAIQLLVGADFNGTVLGTRVTEHHETPGLGDKIELRLSDWITHFAGKKISGADDAHWAVKKDGGDFDQFTGATITPRAVVNAVKRAGLYAQTLPAQLSQLPACGE" ["CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 +"G6876-MONOMER" "SoxR [2Fe-2S] reducing system protein RsxE" ["YdgQ", "RsxE"] "MSEIKDVIVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLATTLVLTLTNLTISTLRHWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAFAAKKGPALSALDGFSIGMGATCAMFVLGSLREIIGNGTLFDGADALLGSWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAGKYLIDERMKKRRAEAAAERALPNGETGNV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "G6880-MONOMER" "anhydro-N-acetylmuramic acid kinase" ["YdhH", "AnmK"] "MKSGRFIGVMSGTSLDGVDVVLATIDEHRVAQLASLSWPIPVSLKQAVLDICQGQQLTLSQFGQLDTQLGQLFADAVNALLKEQNLQARDIVAIGCHGQTVWHEPTGVAPHTLQIGDNNQIVARTGITVVGDFRRRDIALGGQGAPLVPAFHHALLAHPTERRMVLNIGGIANLSLLIPGQPVGGYDTGPGNMLMDAWIWRQAGKPYDKDAEWARAGKVILPLLQNMLSDPYFSQPAPKSTGREYFNYGWLERHLRHFPGVDPRDVQATLAELTAVTISEQVLLSGGCERLMVCGGGSRNPLLMARLAALLPGTEVTTTDAVGISGDDMEALAFAWLAWRTLAGLPGNLPSVTGASQETVLGAIFPANP" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6881-MONOMER" "outer membrane lipoprotein SlyB" ["SlyB"] "MIKRVLVVSMVGLSLVGCVNNDTLSGDVYTASEAKQVQNVSYGTIVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTVGGGTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSPGQRVVLASNGSQVTVSPR" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 "G6882-MONOMER" "DNA-binding transcriptional dual regulator SlyA" ["SlyA"] "MESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLISEMEAVINKTRAEILHGISAEELEQLITLIAKLEHNIIELQAKG" [] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -2427,7 +2427,7 @@ "G6901-MONOMER" "putative oxidoreductase YdhV" ["YdhV"] "MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 0 "G6902-MONOMER" "putative 4Fe-4S ferredoxin-like protein YdhY" ["YdhY"] "MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 4} 0 "G6903-MONOMER" "fumarase D" ["FumD", "YdhZ"] "MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6904-MONOMER" "L,D-transpeptidase LdtE" ["YnhG", "LdtE"] "MKRASLLTLTLIGAFSAIQAAWAVDYPLPPTGSRLVGQNQTYTVQEGDKNLQAIARRFDTAAMLILEANNTIAPVPKPGTTITIPSQLLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTWTPTAGIRQRSLERGIKLPPVVPAGPNNPLGRYALRLAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIKALFSSVRTGTPVKVINEPVKYSVEPNGMRYVEVHRPLSAEEQQNVQTMPYTLPAGFTQFKDNKAVDQKLVDKALYRRAGYPVSVSSGATPAASNAPSVESAQNGEPEQGNMLRVTQ" [] ["CCO-PERI-BAC"] 0 [] {} 0 +"G6904-MONOMER" "L,D-transpeptidase LdtE" ["YnhG", "LdtE"] "MKRASLLTLTLIGAFSAIQAAWAVDYPLPPTGSRLVGQNQTYTVQEGDKNLQAIARRFDTAAMLILEANNTIAPVPKPGTTITIPSQLLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTWTPTAGIRQRSLERGIKLPPVVPAGPNNPLGRYALRLAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIKALFSSVRTGTPVKVINEPVKYSVEPNGMRYVEVHRPLSAEEQQNVQTMPYTLPAGFTQFKDNKAVDQKLVDKALYRRAGYPVSVSSGATPAASNAPSVESAQNGEPEQGNMLRVTQ" [] ["CCO-EXTRACELLULAR", "CCO-PERI-BAC"] 0 [] {} 0 "G6905-MONOMER" "sulfur carrier protein SufE" ["YnhA", "SufE", "sulfur acceptor for SufS cysteine desulfurase"] "MALLPDKEKLLRNFLRCANWEEKYLYIIELGQRLPELRDEDRSPQNSIQGCQSQVWIVMRQNAQGIIELQGDSDAAIVKGLIAVVFILYDQMTPQDIVNFDVRPWFEKMALTQHLTPSRSQGLEAMIRAIRAKAAALS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6906-MONOMER" "L-cysteine desulfurase" ["CsdB", "YnhB", "SufS"] "MIFSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLLG" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6907-MONOMER" "Fe-S cluster scaffold complex subunit SufD" ["YnhC", "SufD", "SufD component of SufBCD Fe-S cluster scaffold complex"] "MAGLPNSSNALQQWHHLFEAEGTKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDSVRLVFVDGRYVPALSDATEGSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQQVLARIGQRLPGGAR" [] [] 1 [] {} 1 @@ -2521,7 +2521,7 @@ "G7011-MONOMER" "phosphoprotein phosphatase 1" ["PrpA", "YebX", "PphA"] "MKQPAPVYQRIAGHQWRHIWLSGDIHGCLEQLRRKLWHCRFDPWRDLLISVGDVIDRGPQSLRCLQLLEQHWVCAVRGNHEQMAMDALASQQMSLWLMNGGDWFIALADNQQKQAKTALEKCQHLPFILEVHSRTGKHVIAHADYPDDVYEWQKDVDLHQVLWSRSRLGERQKGQGITGADHFWFGHTPLRHRVDIGNLHYIDTGAVFGGELTLVQLQ" [] ["CCO-CYTOSOL"] 0 [] {"MN+2": 2} 0 "G7012-MONOMER" "DUF2511 domain-containing protein YebY" ["YebY"] "MMKKSILAFLLLTSSAAALAAPQVITVSRFEVGKDKWAFNREEVMLTCRPGNALYVINPSTLVQYPLNDIAQKEVASGKTNAQPISVIQIDDPNNPGEKMSLAPFIERAEKLC" ["CCO-PERI-BAC"] [] 0 [] {} 0 "G7013-MONOMER" "CopD family protein" ["YebZ"] "MLAFTWIALRFIHFTSLMLVFGFAMYGAWLAPLTIRRLLAKRFLRLQQHAAVWSLISATAMLAVQGGLMGTGWTDVFSPNIWQAVLQTQFGGIWLWQIVLALVTLIVALMQPRNMPRLLFMLTTAQFILLAGVGHATLNEGVTAKIHQTNHAIHLICAAAWFGGLLPVLWCMQLIKGRWRHQAIQALMRFSWCGHFAVIGVLASGVLNALLITGFPPTLTTYWGQLLLLKAILVMIMVVIALANRYVLVPRMRQDEDRAAPWFVWMTKLEWAIGAVVLVIISLLATLEPF" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7014-MONOMER" "copper-binding protein" ["YobA"] "MASTARSLRYALAILTTSLVTPSVWAHAHLTHQYPAANAQVTAAPQAITLNFSEGVETGFSGAKITGPKNENIKTLPAKRNEQDQKQLIVPLADSLKPGTYTVDWHVVSVDGHKTKGHYTFSVK" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {"CU+2": 1} 0 +"G7014-MONOMER" "copper-binding protein" ["YobA"] "MASTARSLRYALAILTTSLVTPSVWAHAHLTHQYPAANAQVTAAPQAITLNFSEGVETGFSGAKITGPKNENIKTLPAKRNEQDQKQLIVPLADSLKPGTYTVDWHVVSVDGHKTKGHYTFSVK" ["CCO-PERI-BAC"] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {"CU+2": 1} 0 "G7015-MONOMER" "putative carbon-nitrogen hydrolase family protein YobB" ["YobB"] "MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPSLSLLGCDYSRRALPAPPDLSLLDPLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPWRKTPGIYHQSHGACLGRRSRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARRLQFFSHQYSIAVLMANARGNSALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "G7016-MONOMER" "exonuclease X" ["YobC", "ExoX"] "MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7019-MONOMER" "MAPEG family inner membrane protein YecN" ["YecN"] "MVSALYAVLSALLLMKFSFDVVRLRMQYRVAYGDGGFSELQSAIRIHGNAVEYIPIAIVLMLFMEMNGAETWMVHICGIVLLAGRLMHYYGFHHRLFRWRRSGMSATWCALLLMVLANLWYMPWELVFSLR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -2549,7 +2549,7 @@ "G7049-MONOMER" "diguanylate cyclase DgcQ" ["DgcQ", "YedQ"] "MQHETKMENQSWLKKLARRLGPGHVVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHLENVANALDKHLQYNVDKLIFLRNGMREALVAPLDFTSLRDAVTEFEQHRDEHAWKIELNRRRTLPVNGVSDALVSEGNLLSRENESLDNEITAALEVGYLLRLAHNSSSMVEQAMYVSRAGFYVSTQPTLFTRNVPTRYYGYVTQPWFIGHSQRENRHRAVRWFTSQPEHASNTEPQVTVSVPVDSNNYWYGVLGMSIPVRTMQQFLRNAIDKNLDGEYQLYDSKLRFLTSSNPDHPTGNIFDPRELALLAQAMEHDTRGGIRMDSRYVSWERLDHFDGVLVRVHTLSEGVRGDFGSISIALTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRVFASDNA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 0 "G7050-MONOMER" "protein YodC" ["YodC"] "MSFMVSEEVTVKEGGPRMIVTGYSSGMVECRWYDGYGVKREAFHETELVPGEGSRSAEEV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7051-MONOMER" "cell division protein DrpB" ["DrpB", "YedR"] "MEYGSTKMEERLSRSPGGKLALWAFYTWCGYFVWAMARYIWVMSRIPDAPVSGFESDLGSTAGKWLGALVGFLFMALVGALLGSIAWYTRPRPARSRRYE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7052-MONOMER" "putative outer membrane protein YedS, N-terminal fragment" ["YedS", "YedT", "YedS_1"] "MKRKVLAMLVPALLVAGAANAAEVYNKDGNKLDLYGKVVGLHYFSDDSGSDGDMSYARIGFKGETQIADQFTGYGQWEFNIGANGPESDKGNTATRLAFAGLGFGQNGTFDYGRNYGVVYDVEAWTDMLPEFGGDTYAGADNFMNGRANGVATYRNNGFFG*VDGLNFALQYQGNNESGGPFGQEGSGSGDGRSLSKENGDGFGMSTSYDFDFGLSLGAAYQTLIVQIVRLELV*MIVTIATEMLVVKPLKHGLLVQNMMLIMCI*QLCTLKLAI*PHMVVASLIMVNQDQPSLTKPKTLKLLLSISSTLACARPSLTCNLKVRI*AVGLMTATATHVTPIKIWLNTLILVRPTTSTKTCPPMLITKSTCWTTTMTSTKQTASLPMISLLWA*STS" [] [] 0 [] {} 0 +"G7052-MONOMER" "putative outer membrane protein YedS, N-terminal fragment" ["YedS", "YedT", "YedS_1"] "MKRKVLAMLVPALLVAGAANAAEVYNKDGNKLDLYGKVVGLHYFSDDSGSDGDMSYARIGFKGETQIADQFTGYGQWEFNIGANGPESDKGNTATRLAFAGLGFGQNGTFDYGRNYGVVYDVEAWTDMLPEFGGDTYAGADNFMNGRANGVATYRNNGFFG*VDGLNFALQYQGNNESGGPFGQEGSGSGDGRSLSKENGDGFGMSTSYDFDFGLSLGAAYQTLIVQIVRLELV*MIVTIATEMLVVKPLKHGLLVQNMMLIMCI*QLCTLKLAI*PHMVVASLIMVNQDQPSLTKPKTLKLLLSISSTLACARPSLTCNLKVRI*AVGLMTATATHVTPIKIWLNTLILVRPTTSTKTCPPMLITKSTCWTTTMTSTKQTASLPMISLLWA*STS" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 "G7055-MONOMER" "protein/nucleic acid deglycase 1" ["YzzC", "YedU", "HchA", "Hsp31", "glyoxalase III", "Maillard deglycase 1"] "MTVQTSKNPQVDIAEDNAFFPSEYSLSQYTSPVSDLDGVDYPKPYRGKHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAYAG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"ZN+2": 1} 1 "G7056-MONOMER" "sensor histidine kinase HprS" ["HprS", "YedV"] "MKRLSITVRLTLLFILLLSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHGDSINKIVNRTNVSDGMLNNIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKINSIIICIVAIVLCSVLSPLLIRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQFADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARADKNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVNAIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLNKHNVFRITLPQRN" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "G7057-MONOMER" "DNA-binding transcriptional dual regulator HprR" ["YedW"] "MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -2559,12 +2559,12 @@ "G7061-MONOMER" "metal-binding protein ZinT" ["YodA", "ZinT", "cadmium-induced cadmium binding protein"] "MAIRLYKLAVALGVFIVSAPAFSHGHHSHGKPLTEVEQKAANGVFDDANVQNRTLSDWDGVWQSVYPLLQSGKLDPVFQKKADADKTKTFAEIKDYYHKGYATDIEMIGIEDGIVEFHRNNETTSCKYDYDGYKILTYKSGKKGVRYLFECKDPESKAPKYIQFSDHIIAPRKSSHFHIFMGNDSQQSLLNEMENWPTYYPYQLSSEEVVEEMMSH" ["CCO-CYTOSOL", "CCO-PERI-BAC"] ["CCO-PERI-BAC", "CCO-CYTOSOL"] 0 [] {"ZN+2": 2} 0 "G7062-MONOMER" "putative cytochrome b561 YodB" ["YodB"] "MNRFSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLLMRETHYNAGIFVWVLMFSRLIIKHRYSDPSIVPPPPAWQMKAASLMHIMLYITFLALPLLGIALMAYSGKSWSFLGFNVSPFVTPNSEIKALIKNIHETWANIGYFLIAAHAGAALFHHYIQKDNTLLRMMPRRK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"PROTOHEME": 1} 0 "G7063-MONOMER" "Mlc titration factor" ["YeeI", "MtfA"] "MIKWPWKVQESAHQTALPWQEALSIPLLTCLTEQEQSKLVTLAERFLQQKRLVPLQGFELDSLRSCRIALLFCLPVLELGLEWLDGFHEVLIYPAPFVVDDEWEDDIGLVHNQRIVQSGQSWQQGPIVLNWLDIQDSFDASGFNLIIHEVAHKLDTRNGDRASGVPFIPLREVAGWEHDLHAAMNNIQEEIELVGENAASIDAYAASDPAECFAVLSEYFFSAPELFAPRFPSLWQRFCQFYQQDPLQRLHHANDTDSFSATNVH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7064-MONOMER" "inverse autotransporter adhesin" ["YeeJ"] "MATKKRSGEEINDRQILCGMGIKLRRLTAGICLITQLAFPMAAAAQGVVNAATQQPVPAQIAIANANTVPYTLGALESAQSVAERFGISVAELRKLNQFRTFARGFDNVRQGDELDVPAQVSEKKLTPPPGNSSDNLEQQIASTSQQIGSLLAEDMNSEQAANMARGWASSQASGAMTDWLSRFGTARITLGVDEDFSLKNSQFDFLHPWYETPDNLFFSQHTLHRTDERTQINNGLGWRHFTPTWMSGINFFFDHDLSRYHSRAGIGAEYWRDYLKLSSNGYLRLTNWRSAPELDNDYEARPANGWDVRAESWLPAWPHLGGKLVYEQYYGDEVALFDKDDRQSNPHAITAGLNYTPFPLMTFSAEQRQGKQGENDTRFAVDFTWQPGSAMQKQLDPNEVAARRSLAGSRYDLVDRNNNIVLEYRKKELVRLTLTDPVTGKSGEVKSLVSSLQTKYALKGYNVEATALEAAGGKVVTTGKDILVTLPAYRFTSTPETDNTWPIEVTAEDVKGNLSNREQSMVVVQAPTLSQKDSSVSLSTQTLNADSHSTATLTFIAHDAAGNPVVGLVLSTRHEGVQDITLSDWKDNGDGSYTQILTTGAMSGTLTLMPQLNGVDAAKAPAVVNIISVSSSRTHSSIKIDKDRYLSGNPIEVTVELRDENDKPVKEQKQQLNNAVSIDNVKPGVTTDWKETADGVYKATYTAYTKGSGLTAKLLMQNWNEDLHTAGFIIDANPQSAKIATLSASNNGVLANENAANTVSVNVADEGSNPINDHTVTFAVLSGSATSFNNQNTAKTDVNGLATFDLKSSKQEDNTVEVTLENGVKQTLIVSFVGDSSTAQVDLQKSKNEVVADGNDSVTMTATVRDAKGNLLNDVMVTFNVNSAEAKLSQTEVNSHDGIATATLTSLKNGDYRVTASVSSGSQANQQVNFIGDQSTAALTLSVPSGDITVTNTAPQYMTATLQDKNGNPLKDKEITFSVPNDVASKFSISNGGKGMTDSNGVAIASLTGTLAGTHMIMARLANSNVSDAQPMTFVADKDRAVVVLQTSKAEIIGNGVDETTLTATVKDPSNHPVAGITVNFTMPQDVAANFTLENNGIAITQANGEAHVTLKGKKAGTHTVTATLGNNNTSDSQPVTFVADKASAQVVLQISKDEITGNGVDSATLTATVKDQFDNEVNNLPVTFSSASSGLTLTPGVSNTNESGIAQATLAGVAFGEKTVTASLANNGASDNKTVHFIGDTAAAKIIELAPVPDSIIAGTPQNSSGSVITATVVDNNGFPVKGVTVNFTSNAATAEMTNGGQAVTNEQGKATVTYTNTRSSIESGARPDTVEASLENGSSTLSTSINVNADASTAHLTLLQALFDTVSAGETTSLYIEVKDNYGNGVPQQEVTLSVSPSEGVTPSNNAIYTTNHDGNFYASFTATKAGVYQLTATLENGDSMQQTVTYVPNVANAEITLAASKDPVIADNNDLTTLTATVADTEGNAIANTEVTFTLPEDVKANFTLSDGGKVITDAEGKAKVTLKGTKAGAHTVTASMTGGKSEQLVVNFIADTLTAQVNLNVTEDNFIANNVGMTRLQATVTDGNGNPLANEAVTFTLPADVSASFTLGQGGSAITDINGKAEVTLSGTKSGTYPVTVSVNNYGVSDTKQVTLIADAGTAKLASLTSVYSFVVSTTEGATMTASVTDANGNPVEGIKVNFRGTSVTLSSTSVETDDRGFAEILVTSTEVGLKTVSASLADKPTEVISRLLNASADVNSATITSLEIPEGQVMVAQDVAVKAHVNDQFGNPVAHQPVTFSAEPSSQMIISQNTVSTNTQGVAEVTMTPERNGSYMVKASLPNGASLEKQLEAIDEKLTLTASSPLIGVYAPTGATLTATLTSANGTPVEGQVINFSVTPEGATLSGGKVRTNSSGQAPVVLTSNKVGTYTVTASFHNGVTIQTQTTVKVTGNSSTAHVASFIADPSTIAATNTDLSTLKATVEDGSGNLIEGLTVYFALKSGSATLTSLTAVTDQNGIATTSVKGAMTGSVTVSAVTTAGGMQTVDITLVAGPADTSQSVLKSNRSSLKGDYTDSAELRLVLHDISGNPIKVSEGMEFVQSGTNVPYIKISAIDYSLNINGDYKATVTGGGEGIATLIPVLNGVHQAGLSTTIQFTRAEDKIMSGTVSVNGTDLPTTTFPSQGFTGAYYQLNNDNFAPGKTAADYEFSSSASWVDVDATGKVTFKNVGSNSERITATPKSGGPSYVYEIRVKSWWVNAGEAFMIYSLAENFCSSNGYTLPRANYLNHCSSRGIGSLYSEWGDMGHYTTDAGFQSNMYWSSSPANSSEQYVVSLATGDQSVFEKLGFAYATCYKNL" [] ["CCO-OUTER-MEM"] 0 [] {} 0 +"G7064-MONOMER" "inverse autotransporter adhesin" ["YeeJ"] "MGIKLRRLTAGICLITQLAFPMAAAAQGVVNAATQQPVPAQIAIANANTVPYTLGALESAQSVAERFGISVAELRKLNQFRTFARGFDNVRQGDELDVPAQVSEKKLTPPPGNSSDNLEQQIASTSQQIGSLLAEDMNSEQAANMARGWASSQASGAMTDWLSRFGTARITLGVDEDFSLKNSQFDFLHPWYETPDNLFFSQHTLHRTDERTQINNGLGWRHFTPTWMSGINFFFDHDLSRYHSRAGIGAEYWRDYLKLSSNGYLRLTNWRSAPELDNDYEARPANGWDVRAESWLPAWPHLGGKLVYEQYYGDEVALFDKDDRQSNPHAITAGLNYTPFPLMTFSAEQRQGKQGENDTRFAVDFTWQPGSAMQKQLDPNEVAARRSLAGSRYDLVDRNNNIVLEYRKKELVRLTLTDPVTGKSGEVKSLVSSLQTKYALKGYNVEATALEAAGGKVVTTGKDILVTLPAYRFTSTPETDNTWPIEVTAEDVKGNLSNREQSMVVVQAPTLSQKDSSVSLSTQTLNADSHSTATLTFIAHDAAGNPVVGLVLSTRHEGVQDITLSDWKDNGDGSYTQILTTGAMSGTLTLMPQLNGVDAAKAPAVVNIISVSSSRTHSSIKIDKDRYLSGNPIEVTVELRDENDKPVKEQKQQLNNAVSIDNVKPGVTTDWKETADGVYKATYTAYTKGSGLTAKLLMQNWNEDLHTAGFIIDANPQSAKIATLSASNNGVLANENAANTVSVNVADEGSNPINDHTVTFAVLSGSATSFNNQNTAKTDVNGLATFDLKSSKQEDNTVEVTLENGVKQTLIVSFVGDSSTAQVDLQKSKNEVVADGNDSVTMTATVRDAKGNLLNDVMVTFNVNSAEAKLSQTEVNSHDGIATATLTSLKNGDYRVTASVSSGSQANQQVNFIGDQSTAALTLSVPSGDITVTNTAPQYMTATLQDKNGNPLKDKEITFSVPNDVASKFSISNGGKGMTDSNGVAIASLTGTLAGTHMIMARLANSNVSDAQPMTFVADKDRAVVVLQTSKAEIIGNGVDETTLTATVKDPSNHPVAGITVNFTMPQDVAANFTLENNGIAITQANGEAHVTLKGKKAGTHTVTATLGNNNTSDSQPVTFVADKASAQVVLQISKDEITGNGVDSATLTATVKDQFDNEVNNLPVTFSSASSGLTLTPGVSNTNESGIAQATLAGVAFGEKTVTASLANNGASDNKTVHFIGDTAAAKIIELAPVPDSIIAGTPQNSSGSVITATVVDNNGFPVKGVTVNFTSNAATAEMTNGGQAVTNEQGKATVTYTNTRSSIESGARPDTVEASLENGSSTLSTSINVNADASTAHLTLLQALFDTVSAGETTSLYIEVKDNYGNGVPQQEVTLSVSPSEGVTPSNNAIYTTNHDGNFYASFTATKAGVYQLTATLENGDSMQQTVTYVPNVANAEITLAASKDPVIADNNDLTTLTATVADTEGNAIANTEVTFTLPEDVKANFTLSDGGKVITDAEGKAKVTLKGTKAGAHTVTASMTGGKSEQLVVNFIADTLTAQVNLNVTEDNFIANNVGMTRLQATVTDGNGNPLANEAVTFTLPADVSASFTLGQGGSAITDINGKAEVTLSGTKSGTYPVTVSVNNYGVSDTKQVTLIADAGTAKLASLTSVYSFVVSTTEGATMTASVTDANGNPVEGIKVNFRGTSVTLSSTSVETDDRGFAEILVTSTEVGLKTVSASLADKPTEVISRLLNASADVNSATITSLEIPEGQVMVAQDVAVKAHVNDQFGNPVAHQPVTFSAEPSSQMIISQNTVSTNTQGVAEVTMTPERNGSYMVKASLPNGASLEKQLEAIDEKLTLTASSPLIGVYAPTGATLTATLTSANGTPVEGQVINFSVTPEGATLSGGKVRTNSSGQAPVVLTSNKVGTYTVTASFHNGVTIQTQTTVKVTGNSSTAHVASFIADPSTIAATNTDLSTLKATVEDGSGNLIEGLTVYFALKSGSATLTSLTAVTDQNGIATTSVKGAMTGSVTVSAVTTAGGMQTVDITLVAGPADTSQSVLKSNRSSLKGDYTDSAELRLVLHDISGNPIKVSEGMEFVQSGTNVPYIKISAIDYSLNINGDYKATVTGGGEGIATLIPVLNGVHQAGLSTTIQFTRAEDKIMSGTVSVNGTDLPTTTFPSQGFTGAYYQLNNDNFAPGKTAADYEFSSSASWVDVDATGKVTFKNVGSNSERITATPKSGGPSYVYEIRVKSWWVNAGEAFMIYSLAENFCSSNGYTLPRANYLNHCSSRGIGSLYSEWGDMGHYTTDAGFQSNMYWSSSPANSSEQYVVSLATGDQSVFEKLGFAYATCYKNL" [] ["CCO-OUTER-MEM"] 0 [] {} 0 "G7066-MONOMER" "putative glycosyltransferase, N-terminal fragment" ["YeeK", "YeeL_1", "YeeL"] "MFLASLLRRIAFSYYDYKAYNFNIEKTDFVVIHIPDQIGDAMAIFPVIRALELHKIKHLLIVTSTINLEVFNALKLEQTKLTLVTMTMQDHATLKEIKDLAKNITQQYGTPDLCIEGMRKKNLKTMLFISQLKAKTNFQVVGITMNCFSPLCKNASSMDQKLRAPVPMTWAFMMREAGFPAVRPIYELPLSEDVLDEVREEMRSLGSYIAFNLEGSSQERTFSLSIAENLIAKI*SETDIPIVIVHGPKGEDKARALVDCYNNVYRLSLPPSIKRSAAIIKDAYIAITPDTSILHMASAYNTPVVAIYADYKTRWPAMADVSESVVVGQKIDNISLDEFAKALKSVLARI" [] [] 0 [] {} 0 "G7068-MONOMER" "putative transcriptional regulator YeeN" ["YeeN"] "MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVPKHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGNIGAAGSVSYMFDNTGVIVFKGTDPDHIFEILLEAEVDVRDVTEEEGNIVIYTEPTDLHKGIAALKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDVQKVYHNVANL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G7071-MONOMER" "DNA-binding transcriptional activator Cbl" ["Cbl"] "MNFQQLKIIREAARQDYNLTEVANMLFTSQSGVSRHIRELEDELGIEIFVRRGKRLLGMTEPGKALLVIAERILNEASNVRRLADLFTNDTSGVLTIATTHTQARYSLPEVIKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLVAFPWFRWHHSLLVPHDHPLTQISPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALGLGIGLVAEQSSGEQEEENLIRLDTRHLFDANTVWLGLKRGQLQRNYVWRFLELCNAGLSVEDIKRQVMESSEEEIDYQI" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7072-MONOMER" "DNA-binding transcriptional dual regulator Nac" ["Nac"] "MNFRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGELNQQLLIRTKRGVTPTDAGKILYTHARAILRQCEQAQLAVHNVGQALSGQVSIGFAPGTAASSITMPLLQAVRAEFPEIVIYLHENSGAVLNEKLINHQLDMAVIYEHSPVAGVSSQALLKEDLFLVGTQDCPGQSVDVNAIAQMNLFLPSDYSAIRLRVDEAFSLRRLTAKVIGEIESIATLTAAIASGMGVAVLPESAARSLCGAVNGWMSRITTPSMSLSLSLNLPARANLSPQAQAVKELLMSVISSPVMEKRQWQLVS" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7073-MONOMER" "L,D-transpeptidase LdtA" ["LdtA", "YzzT", "YeeG", "ErfK"] "MRRVNILCSFALLFASHTSLAVTYPLPPEGSRLVGQSFTVTVPDHNTQPLETFAAQYGQGLSNMLEANPGADVFLPKSGSQLTIPQQLILPDTVRKGIVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRREYAKRGESLPAFVPAGPDNPMGLYAIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKYLFDNVPVGTRVQIIDQPVKYTTEPDGSNWLEVHEPLSRNRAEYESDRKVPLPVTPSLRAFINGQEVDVNRANAALQRRSGMPVQISSGSRQMF" [] ["CCO-PERI-BAC"] 0 [] {} 0 +"G7073-MONOMER" "L,D-transpeptidase LdtA" ["LdtA", "YzzT", "YeeG", "ErfK"] "MRRVNILCSFALLFASHTSLAVTYPLPPEGSRLVGQSFTVTVPDHNTQPLETFAAQYGQGLSNMLEANPGADVFLPKSGSQLTIPQQLILPDTVRKGIVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRREYAKRGESLPAFVPAGPDNPMGLYAIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKYLFDNVPVGTRVQIIDQPVKYTTEPDGSNWLEVHEPLSRNRAEYESDRKVPLPVTPSLRAFINGQEVDVNRANAALQRRSGMPVQISSGSRQMF" [] ["CCO-EXTRACELLULAR", "CCO-PERI-BAC"] 0 [] {} 0 "G7074-MONOMER" "CP4-44 prophage; IS5 transposase and trans-activator" ["InsH6", "Trs5-6", "Yi52_6"] "MSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMVEVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRAKVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRADQMIRQWERSH" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7075-MONOMER" "CP4-44 prophage; TonB-dependent receptor plug domain-containing protein YoeA" ["YoeE", "YoeA", "YoeA_1"] "MLYNIPCRIYILSTLSLCISGIVSTATATSSETKISNEETLVVTTNRSASNLWESPATIQVIDQQTLQNSTNASIADNLQDIPGVEITDNSLAGRKQIRIRGEASSRVLILIDGQEVTYQRAGDNYGVGLLIDESALERVEVVKGPYSVLYGSQAIGGIVNFITKKG" [] ["CCO-MEMBRANE"] 0 [] {} 0 "G7079-MONOMER" "CP4-44 prophage; putative GTP-binding protein" ["YeeP"] "MVTQADKTEPCHEWDMAGIQPSPAQAQNIREKTEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQAREQFTGAVDRIFDTAESVCIASVARTVLRAVRDTVVSVARAVWNWIFF" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -2604,7 +2604,7 @@ "G7119-MONOMER" "prophage P2 late control protein OgrK" ["OgrK"] "MFHCPLCQHAAHARTSRYITDTTKERYHQCQNVNCSATFITYESVQRYIVKPGEVHVVRPHPLPSGQQIMWM" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7120-MONOMER" "phage protein D" ["YegZ", "putative protein fragment"] "MRVAEFSISLATGRADIYTETPVKVSGFKRVIDEQDWTITKVTHFLNNSGFTTSLELEVRLSDVGYETEDNE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7122-MONOMER" "uncharacterized protein YegR" ["YegR"] "MKKIAAISLISIFIMSGCAVHNDETSIGKFGLAYKSNIQRKLDNQYYTEAEASLARGRISGAENIVKNDATHFCVTQGKKMQIVELKTEGVGLHGVARLTFKCGE" [] [] 0 [] {} 0 -"G7123-MONOMER" "lipid kinase YegS" ["YegS"] "MAEFPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFATSVGIPEALDKALKLAIAGDAIAIDMAQVNKQTCFINMATGGFGTRITTETPEKLKAALGSVSYIIHGLMRMDTLQPDRCEIRGENFHWQGDALVIGIGNGRQAGGGQQLCPNALINDGLLQLRIFTGDEILPALVSTLKSDEDNPNIIEGASSWFDIQAPHDITFNLDGEPLSGQNFHIEILPAALRCRLPPDCPLLR" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 +"G7123-MONOMER" "lipid kinase YegS" ["YegS"] "MAEFPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFATSVGIPEALDKALKLAIAGDAIAIDMAQVNKQTCFINMATGGFGTRITTETPEKLKAALGSVSYIIHGLMRMDTLQPDRCEIRGENFHWQGDALVIGIGNGRQAGGGQQLCPNALINDGLLQLRIFTGDEILPALVSTLKSDEDNPNIIEGASSWFDIQAPHDITFNLDGEPLSGQNFHIEILPAALRCRLPPDCPLLR" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "G7126-MONOMER" "IS3 element protein InsF" ["Tra5-5", "InsF1"] "MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQFRQHCDSVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASRKFSPVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSMSAKGCCYDNACVESFFHSLKVECIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGGLSPEQFENKNLA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7128-MONOMER" "putative tagatose-1,6-bisphosphate aldolase 2 chaperone" ["GatZ"] "MKTLIARHKAGEHIGICSVCSAHPLVIEAALAFDRNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVFTIADKVGFARERIILGGDHLGPNCWQQENADAAMEKSVELVKEYVRAGFSKIHLDASMSCAGDPIPLAPETVAERAAVLCFAAESVATDCQREQLSYVIGTEVPVPGGEASAIQSVHITHVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEAQPLAQWIENTRMVYEAHSTDYQTRTAYWELVRDHFAILKVGPALTFALREAIFALAQIEQELIAPENRSGCLAVIEEVMLDEPQYWKKYYRTGFNDSLLDIRYSLSDRIRYYWPHSRIKNSVETMMVNLEGVDIPLGMISQYLPKQFERIQSGELSAIPHQLIMDKIYDVLRAYRYGCAE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7131-MONOMER" "putative ADP-ribosylglycohydrolase YegU" ["YegU"] "MKTERILGALYGQALGDAMGMPSELWPRSRVKAHFGWIDRFLPGPKENNAACYFNRAEFTDDTSMALCLADALLEREGKIDPDLIGRNILDWALRFDAFNKNVLGPTSKIALNAIRDGKPVAELENNGVTNGAAMRVSPLGCLLPARDVDSFIDDVALASSPTHKSDLAVAGAVVIAWAISRAIDGESWSAIVDSLPSIARHAQQKRITTFSASLAARLEIALKIVRNADGTESASEQLYQVVGAGTSTIESVPCAIALVELAQTDPNRCAVLCANLGGDTDTIGAMATAICGALHGVNAIDPALKAELDAVNQLDFNRYATALAKYRQQREAV" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -2706,7 +2706,7 @@ "G7246-MONOMER" "putative PTS multiphosphoryl transfer protein FryA" ["FryA", "YpdD", "TTP", "triphosphoryl transfer protein"] "MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEITFINHRQNAKADAKSSLALIGTGTLFNDSCSLNISGSDEEQARRVLEEYIQVRFIDSDSVQPTQAELTAHPLPRSLSRLNPDLLYGNVLASGVGVGTLTLLQSDSLDSYRAIPASAQDSTRLEHSLATLAEQLNQQLRERDGESKTILSAHLSLIQDDEFAGNIRRLMTEQHQGLGAAIISNMEQVCAKLSASASDYLRERVSDIRDISEQLLHITWPELKPRNKLVLEKPTILVAEDLTPSQFLSLDLKNLAGMILEKTGRTSHTLILARASAIPVLSGLPLDAIARYAGQPAVLDAQCGVLAINPNDAVSGYYQVAQTLADKRQKQQAQAAAQLAYSRDNKRIDIAANIGTALEAPGAFANGAEGVGLFRTEMLYMDRDSAPDEQEQFEAYQQVLLAAGDKPIIFRTMDIGGDKSIPYLNIPQEENPFLGYRAVRIYPEFAGLFRTQLRAILRAASFGNAQLMIPMVHSLDQILWVKGEIQKAIVELKRDGLRHAETITLGIMVEVPSVCYIIDHFCDEVDFFSIGSNDMTQYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVTTAHQRGKWVGICGELGGESRYLPLLLGLGLDELSMSSPRIPAVKSQLRQLDSEACRELARQACECRSAQEIEALLTAFTPEEDVRPLLALENIFVDQDFSNKEQAIQFLCGNLGVNGRTEHPFELEEDVWQREEIVTTGVGFGVAIPHTKSQWIRHSSISIARLAKPIGWQSEMGEVELVIMLTLGANEGMNHVKVFSQLARKLVNKNFRQSLFAAQDAQSILTLLETELTF" [] ["CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "G7247-MONOMER" "aminopeptidase YpdE" ["YpdE", "broad-specificity exoaminopeptidase"] "MDLSLLKALSEADAIASSEQEVRQILLEEADRLQKEVRFDGLGSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLDGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMGKAFDDRLGCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPMLVLSDKSLIAPPKLTAWVETVAAEIGVPLQADMFSNGGTDGGAVHLTGTGVPTVVMGPATRHGHCAASIADCRDILQMQQLLSALIQRLTRETVVQLTDFR" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "G7248-MONOMER" "aminopeptidase YpdF" ["YpdF"] "MTLLASLRDWLKAQQLDAVLLSSRQNKQPHLGISTGSGYVVISRESAHILVDSRYYVEVEARAQGYQLHLLDATNTLTTIVNQIIADEQLQTLGFEGQQVSWETAHRWQSELNAKLVSATPDVLRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKASFDTIVASGWRGALPHGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHLLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDYFGHNTGHAIGIEVHEDPRFSPRDTTTLQPGMLLTVEPGIYLPGQGGVRIEDVVLVTPQGAEVLYAMPKTVLLTGEA" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G7250-MONOMER" "putative PTS enzyme IIB component FryB" ["YpdH", "FryB", "Enzyme IIBFry", "EIIBFry"] "MSKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAVTPEDNERFESRDVYEITLQDAIKNAAGIIKEIEEMIASEQQ" [] ["CCO-CYTOSOL"] 0 [] {} 1 +"G7250-MONOMER" "putative PTS enzyme IIB component FryB" ["YpdH", "FryB", "Enzyme IIBFry", "EIIBFry"] "MSKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAVTPEDNERFESRDVYEITLQDAIKNAAGIIKEIEEMIASEQQ" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 "G7251-MONOMER" "putative transport protein YfeO" ["YfeO"] "MLHPRARTMLLLSLPAVAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLWIIGVLTLTGIAVGLVIRFSQGHAGPDPACEPLIGAPVPPSALPGLIVALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLPRVNRMEWTILASAGTIGALFGTPVAAALIFSQTLNGSSEVPLWDRLFAPLMAAAAGALTTGLFFHPHFSLPIAHYGQMEMTDILSGAIVAAIAIAAGMVAVWCLPRLHAMMHQMKNPVLVLGIGGFILGILGVIGGPVSLFKGLDEMQQMVANQAFSTSDYFLLAVIKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHEHVPAVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPNTTLLPLLCIVMLPAWLLLAGKPMMMVNRPKQQPPHDNV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7252-MONOMER" "DUF2502 domain-containing protein YpeC" ["YpeC"] "MFRSLFLAAALMAFTPLAANAGEITLLPSIKLQIGDRDHYGNYWDGGHWRDRDYWHRNYEWRKNRWWRHDNGYHRGWDKRKAYERGYREGWRDRDDHRGKGRGHGHRH" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7255-MONOMER" "putative IS186/IS421 transposase" ["InsL3"] "MNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLLRLGLAYGPGGMSLREVTAWAQLHDVATLSDVALLKRLRNAADWFGILAAQTLAVRAAVTGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELTDSRDAERLDRFAQTADEIRIADRGFGSRPECIRSLAFGEADYIVRVHWRGLRWLTAEGMRFDMMGFLRGLDCGKNGETTVMIGNSGNKKAGAPFPARLIAVSLPPEKALISKTRLLSENRRKGRVVQAETLEAAGHVLLLTSLPEDEYSAEQVADCYRLRWQIELAFKRLKSLLHLDALRAKEPELAKAWIFANLLAAFLIDDIIQPSLDFPPRSAGSEKKN" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -2775,11 +2775,11 @@ "G7337-MONOMER" "putative inner membrane protein" ["YphA"] "MNTLRYFDFGAARPVLLLIARIAVVLIFIIFGFPKMMGFDGTVQYMASLGAPMPMLAAIIAVVMEVPAAILIVLGFFTRPLAVLFIFYTLGTAVIGHHYWDMTGDAVGPNMINFWKNVSIAGAFLLLAITGPGAISLDRR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7338-MONOMER" "putative aldose 1-epimerase YphB" ["YphB", "putative sulfoquinovose mutarotase YphB"] "MTIYTLSHGSLKLDVSDQGGVIEGFWRDTTPLLRPGKKSGVATDASCFPLVPFANRVSGNRFVWQGREYQLQPNVEWDAHYLHGDGWLGEWQCVSHSDDSLCLVYEHRSGVYHYRVSQAFHLTADTLTVTLSVTNQGAETLPFGTGWHPYFPLSPQTRIQAQASGYWLEREQWLAGEFCEQLPQELDFNQPAPLPRQWVNNGFAGWNGQARIEQPQEGYAIIMETTPPAPCYFIFVSDPAFDKGYAFDFFCLEPMSHAPDDHHRPEGGDLIALAPGESTTSEMSLRVEWL" [] [] 0 [] {} 0 "G7342-MONOMER" "putative ABC transporter periplasmic binding protein YphF" ["YphF"] "MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHVDGLP" [] ["CCO-PERI-BAC"] 0 [] {} 1 -"G7343-MONOMER" "DUF5107 domain-containing protein YphG" ["YphG"] "MTPVKVWQERVEIPTYETGPQDIHPMFLENRVYQGSSGAVYPYGVTDTLSEQKTLKSWQAVWLENDYIKVMILPELGGRVHRAWDKVKQRDFVYHNEVIKPALVGLLGPWISGGIEFNWPQHHRPTTFMPVDFTLEAHEDGAQTVWVGETEPMHGLQVMTGFTLRPDRAALEIASRVYNGNATPRHFLWWANPAVKGGEGHQSVFPPDVTAVFDHGKRAVSAFPIATGTYYKVDYSAGVDISRYKNVPVPTSYMAEKSQYDFVGAWCHDEDGGLLHVANHHIAPGKKQWSWGHSEFGQAWDKSLTDNNGPYIELMTGIFADNQPDFTWLDAYEEKRFEQYFLPYHSLGMVQNASRDAVIKLQRSKRGIEWGLYAISPLNGYRLAIREIGKCNALLDDAVALMPATAIQGVLHGINPERLTIELSDADGNIVLSYQEHQPQALPLPDVAKAPLAAQDITSTDEAWFIGQHLEQYHHASRSPFDYYLRGVALDPLDYRCNLALAMLEYNRADFPQAVAYATQALKRAHALNKNPQCGQASLIRASAYERQGQYQQAEEDFWRAVWSGNSKAGGYYGLARLAARNGNFDAGLDFCQQSLRACPTNQEVLCLHNLLLVLSGRQDNARVQREKLLRDYPLNATLWWLNWFDGRSESALAQWRGLCQGRDVNALMTAGQLINWGMPTLAAEMLNALDCQRTLPLYLQASLLPKAERGELVAKAIDVFPQFVRFPNTLEEVAALESIEECWFARHLLACFYYNKRSYNKAIAFWQRCVEMSPEFADGWRGLAIHAWNKQHDYELAARYLDNAYQLAPQDARLLFERDLLDKLSGATPEKRLARLENNLEIALKRDDMTAELLNLWHLTGQADKAADILATRKFHPWEGGEGKVTSQFILNQLLRAWQHLDARQPQQACELLHAALHYPENLSEGRLPGQTDNDIWFWQAICANAQGDETEATRCLRLAATGDRTINIHSYYNDQPVDYLFWQGMALRLLGEQQTAQQLFSEMKQWAQEMAKTSIEADFFAVSQPDLLSLYGDLQQQHKEKCLMVAMLASAGLGEVAQYESARAELTAINPAWPKAALFTTVMPFIFNRVH" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"G7343-MONOMER" "DUF5107 domain-containing protein YphG" ["YphG"] "MTPVKVWQERVEIPTYETGPQDIHPMFLENRVYQGSSGAVYPYGVTDTLSEQKTLKSWQAVWLENDYIKVMILPELGGRVHRAWDKVKQRDFVYHNEVIKPALVGLLGPWISGGIEFNWPQHHRPTTFMPVDFTLEAHEDGAQTVWVGETEPMHGLQVMTGFTLRPDRAALEIASRVYNGNATPRHFLWWANPAVKGGEGHQSVFPPDVTAVFDHGKRAVSAFPIATGTYYKVDYSAGVDISRYKNVPVPTSYMAEKSQYDFVGAWCHDEDGGLLHVANHHIAPGKKQWSWGHSEFGQAWDKSLTDNNGPYIELMTGIFADNQPDFTWLDAYEEKRFEQYFLPYHSLGMVQNASRDAVIKLQRSKRGIEWGLYAISPLNGYRLAIREIGKCNALLDDAVALMPATAIQGVLHGINPERLTIELSDADGNIVLSYQEHQPQALPLPDVAKAPLAAQDITSTDEAWFIGQHLEQYHHASRSPFDYYLRGVALDPLDYRCNLALAMLEYNRADFPQAVAYATQALKRAHALNKNPQCGQASLIRASAYERQGQYQQAEEDFWRAVWSGNSKAGGYYGLARLAARNGNFDAGLDFCQQSLRACPTNQEVLCLHNLLLVLSGRQDNARVQREKLLRDYPLNATLWWLNWFDGRSESALAQWRGLCQGRDVNALMTAGQLINWGMPTLAAEMLNALDCQRTLPLYLQASLLPKAERGELVAKAIDVFPQFVRFPNTLEEVAALESIEECWFARHLLACFYYNKRSYNKAIAFWQRCVEMSPEFADGWRGLAIHAWNKQHDYELAARYLDNAYQLAPQDARLLFERDLLDKLSGATPEKRLARLENNLEIALKRDDMTAELLNLWHLTGQADKAADILATRKFHPWEGGEGKVTSQFILNQLLRAWQHLDARQPQQACELLHAALHYPENLSEGRLPGQTDNDIWFWQAICANAQGDETEATRCLRLAATGDRTINIHSYYNDQPVDYLFWQGMALRLLGEQQTAQQLFSEMKQWAQEMAKTSIEADFFAVSQPDLLSLYGDLQQQHKEKCLMVAMLASAGLGEVAQYESARAELTAINPAWPKAALFTTVMPFIFNRVH" [] ["CCO-OUTER-MEM", "CCO-CYTOSOL"] 0 [] {} 0 "G7344-MONOMER" "putative DNA-binding transcriptional regulator, NAGC-like" ["YphH"] "MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7345-MONOMER" "histidine kinase GlrK" ["QseE", "GlrK", "YfhZ", "YfhK"] "MKRWPVFPRSLRQLVMLAFLLILLPLLVLAWQAWQSLNALSDQAALVNRTTLIDARRSEAMTNAALEMERSYRQYCVLDDPTLAKVYQSQRKRYSEMLDAHAGVLPDDKLYQALRQDLHNLAQLQCNNSGPDAAAAARLEAFASANTEMVQATRTVVFSRGQQLQREIAERGQYFGWQSLVLFLVSLVMVLLFTRMIIGPVKNIERMINRLGEGRSLGNSVSFSGPSELRSVGQRILWLSERLSWLESQRHQFLRHLSHELKTPLASMREGTELLADQVVGPLTPEQKEVVSILDSSSRNLQKLIEQLLDYNRKQADSAVELENVELAPLVETVVSAHSLPARAKMMHTDVDLKATACLAEPMLLMSVLDNLYSNAVHYGAESGNICLRSSLHGARVYIDVINTGTPIPQEERAMIFEPFFQGSHQRKGAVKGSGLGLSIARDCIRRMQGELYLVDESGQDVCFRIELPSSKNTK" [] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 1 "G7346-MONOMER" "putative 4Fe-4S cluster-containing protein YfhL" ["YfhL"] "MALLITKKCINCDMCEPECPNEAISMGDHIYEINSDKCTECVGHYETPTCQKVCPIPNTIVKDPAHVETEEQLWDKFVLMHHADKI" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 2} 0 -"G7347-MONOMER" "protein RseC" ["RseC", "SoxR and σE factor regulatory protein RseC"] "MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7347-MONOMER" "protein RseC" ["RseC", "SoxR and σE factor regulatory protein RseC"] "MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "G7348-MONOMER" "anti-sigma factor stabilizing protein RseB" ["RseB"] "MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFGAAQ" ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "G7349-MONOMER" "tRNA 3-amino-3-carboxypropyltransferase" ["TuaA", "TapT", "YfiP", "tRNA aminocarboxypropyltransferase", "DTW domain-containing protein YfiP"] "MTENAVLQLRAERIARATRPFLARGNRVRRCQRCLLPEKLCLCSTITPAQAKSRFCLLMFDTEPMKPSNTGRLIADILPDTVAFQWSRTEPSQDLLELVQNPDYQPMVVFPASYADEQREVIFTPPAGKPPLFIMLDGTWPEARKMFRKSPYLDNLPVISVDLSRLSAYRLREAQAEGQYCTAEVAIALLDMAGDTGAAAGLGEHFTRFKTRYLAGKTQHLGSITAEQLESV" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 "G7350-MONOMER" "peptidyl-lysine N-acetyltransferase" ["PatZ", "Pka", "YfiQ"] "MSQRGLEALLRPKSIAVIGASMKPNRAGYLMMRNLLAGGFNGPVLPVTPAWKAVLGVLAWPDIASLPFTPDLAVLCTNASRNLALLEELGEKGCKTCIILSAPASQHEDLRACALRHNMRLLGPNSLGLLAPWQGLNASFSPVPIKRGKLAFISQSAAVSNTILDWAQQRKMGFSYFIALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFVSAARSASRNKPILVIKSGRSPAAQRLLNTTAGMDPAWDAAIQRAGLLRVQDTHELFSAVETLSHMRPLRGDRLMIISNGAAPAALALDALWSRNGKLATLSEETCQKLRDALPEHVAISNPLDLRDDASSEHYIKTLDILLHSQDFDALMVIHSPSAAAPATESAQVLIEAVKHHPRSKYVSLLTNWCGEHSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRRNQKQLRETPALPSNLTSNTAEAHLLLQQAIAEGATSLDTHEVQPILQAYGMNTLPTWIASDSTEAVHIAEQIGYPVALKLRSPDIPHKSEVQGVMLYLRTANEVQQAANAIFDRVKMAWPQARVHGLLVQSMANRAGAQELRVVVEHDPVFGPLIMLGEGGVEWRPEDQAVVALPPLNMNLARYLVIQGIKSKKIRARSALRPLDVAGLSQLLVQVSNLIVDCPEIQRLDIHPLLASGSEFTALDVTLDISPFEGDNESRLAVRPYPHQLEEWVELKNGERCLFRPILPEDEPQLQQFISRVTKEDLYYRYFSEINEFTHEDLANMTQIDYDREMAFVAVRRIDQTEEILGVTRAISDPDNIDAEFAVLVRSDLKGLGLGRRLMEKLITYTRDHGLQRLNGITMPNNRGMVALARKLGFNVDIQLEEGIVGLTLNLAQREES" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 @@ -2814,7 +2814,7 @@ "G7383-MONOMER" "putative invertase fragment" ["YpjG", "PinH"] "MRGRRSGLKKLVRTSSAGNALLVCKLNRLGRSMWHLVVLLEELCERGINFRALAQSIFAQQWGDECCKSKTICDLKVIV" [] ["CCO-MEMBRANE"] 0 [] {} 0 "G7384-MONOMER" "DUF5508 domain-containing protein YpjB" ["YpjB"] "MESRNSYENKIDEISSLSESKEHPIDIQEKKDAFVNEFKGVLFDKNTRSSELLFNFYECCYKFLPRAQPQDKIDSYNSALQAFSIFCSSTLTHNNIGFDFKLFPEVKLSGEHLETVFKYKNGDDVREIAKINITLQKEEGGLYNLRGLDFKGCFFSGQNFSNYDIQYVNWGTSLFDVDTPCIFNAPAYNKSNEKSLKPVSENGLSGVLTDRNNKIKLITGVAPFDDILFMDDDFDDSSSEDDPVENSPVVTSPVVSSSKSSFQ" [] ["CCO-OUTER-MEM"] 0 [] {} 0 "G7385-MONOMER" "DUF5507 domain-containing protein YpjC" ["YpjC"] "MLVSKSNGFNASAVLGSGSYNENKSSKHMELLAHSILKLICKEAASETYRGALETLQKMMSECIYQEGNAFVIMGAGEQLKRIKYEVGENNLKVFNVHFNNNHELVSSGEPDVICLSKQVWENLLIKLKLENNENVFSETKKLSNKNNADQFFECAKRNE" [] [] 0 [] {} 0 -"G7389-MONOMER" "putative uncharacterized protein YgaQ" [] "MFSIKPGPRNLPIDNPTLLSWNITDGDLNSKLNTLEYLNCITNIINSCGVYPQGLKDREIISTFHAEKVINDLLKNDYKISLSPDTTYRELNKAAQRSITAPDRIGERKT*VYQRDTMIERGDNSGVYQYGRAEHFTHIISDKPSPKDKYVAYAINIPDYELAADVYNINVTSPSGQQETFKILINLEHLRQTLERKSLTAVQKSQCEIITPKKPGEAILHAFNATYQQIRENMSEFARCHYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMGDLQDFIALVKDAKKFGIDIIPDYTFNFMGIGGSGKNDLDYPSADIRAKISKDIEGGIPGY*QGQVLIPFIKDPVTKERKQIHPEDIHLTAKDFEASKDNISKDEWENLHALKEKRLNGMPKTTPKSDQVIMLQNQYVREMRKYGVRGLRYDAAKHSKHEQIERSITPPLKNYNERLHNTNLFNPKYHKKAVMNYMEYLVTCQLDEQQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGDLQTLASKPGSTISSIPSERRILININHDFPNNGNLFNDFLFNHQQDEQLAMAYIAALPFSRPLVYWDGQVLKSTTEIKNYDGSTRVGGEA*LNKGCSTYQQLYNEFHALYIDKAGIWSAFEGVSATKNVLAFSRGDSVNINHSPHDGLVIINKGNEEVEGTWPNKLQPGIYKNMGSNSVNIIINNTRKIIPPGKVFTLRGGTLNINIPGRSALLLGKTGEPPNYLYL" [] [] 0 [] {} 0 +"G7389-MONOMER" "putative uncharacterized protein YgaQ" [] "MFSIKPGPRNLPIDNPTLLSWNITDGDLNSKLNTLEYLNCITNIINSCGVYPQGLKDREIISTFHAEKVINDLLKNDYKISLSPDTTYRELNKAAQRSITAPDRIGERKT*VYQRDTMIERGDNSGVYQYGRAEHFTHIISDKPSPKDKYVAYAINIPDYELAADVYNINVTSPSGQQETFKILINLEHLRQTLERKSLTAVQKSQCEIITPKKPGEAILHAFNATYQQIRENMSEFARCHYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMGDLQDFIALVKDAKKFGIDIIPDYTFNFMGIGGSGKNDLDYPSADIRAKISKDIEGGIPGY*QGQVLIPFIKDPVTKERKQIHPEDIHLTAKDFEASKDNISKDEWENLHALKEKRLNGMPKTTPKSDQVIMLQNQYVREMRKYGVRGLRYDAAKHSKHEQIERSITPPLKNYNERLHNTNLFNPKYHKKAVMNYMEYLVTCQLDEQQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGDLQTLASKPGSTISSIPSERRILININHDFPNNGNLFNDFLFNHQQDEQLAMAYIAALPFSRPLVYWDGQVLKSTTEIKNYDGSTRVGGEA*LNKGCSTYQQLYNEFHALYIDKAGIWSAFEGVSATKNVLAFSRGDSVNINHSPHDGLVIINKGNEEVEGTWPNKLQPGIYKNMGSNSVNIIINNTRKIIPPGKVFTLRGGTLNINIPGRSALLLGKTGEPPNYLYL" [] ["CCO-EXTRACELLULAR"] 0 [] {} 0 "G7394-MONOMER" "glutarate dioxygenase GlaH" ["GlaH", "YgaT", "CsiD"] "MNALTAVQNNAVDSGQDYSGFTLTPSAQSPRLLELTFTEQTTKQFLEQVAEWPVQALEYKSFLRFRVAKILDDLCANQLQPLLLKTLLNRAEGALLINAVGVDDVKQADEMVKLATAVAHLIGRSNFDAMSGQYYARFVVKNVDNSDSYLRQPHRVMELHNDGTYVEEITDYVLMMKIDEQNMQGGNSLLLHLDDWEHLDNYFRHPLARRPMRFAAPPSKNVSKDVFHPVFDVDQQGRPVMRYIDQFVQPKDFEEGVWLSELSDAIETSKGILSVPVPVGKFLLINNLFWLHGRDRFTPHPDLRRELMRQRGYFAYASNHYQTHQ" [] ["CCO-CYTOSOL"] 0 [] {"FE+2": 1} 1 "G7395-MONOMER" "K+ binding protein" ["Kbp", "YzzM", "YgaU"] "MGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLNKTGIPDADKVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGIASVDDQVKTATPATASQFYTVKSGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIPEE" [] ["CCO-CYTOSOL"] 1 [] {} 0 "G7396-MONOMER" "Pmp3 family protein YqaE" ["YqaE"] "MGFWRIVITIILPPLGVLLGKGFGWAFIINILLTLLGYIPGLIHAFWVQTRD" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -2852,13 +2852,13 @@ "G7434-MONOMER" "putative anti-terminator regulatory protein" ["YgcP"] "MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7435-MONOMER" "putative flavoprotein" ["YgcQ"] "MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ" [] ["CCO-MEMBRANE"] 0 [] {} 0 "G7436-MONOMER" "putative flavoprotein" ["YgcR"] "MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 -"G7439-MONOMER" "putative FAD-containing dehydrogenase" ["YgcV", "YgcU", "YgcT"] "MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKVTGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK" [] ["CCO-PEROXISOME", "CCO-CYTOSOL"] 0 [] {} 0 +"G7439-MONOMER" "putative FAD-containing dehydrogenase" ["YgcV", "YgcU", "YgcT"] "MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKVTGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7440-MONOMER" "putative deoxygluconate dehydrogenase" ["YgcW"] "MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVGITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7442-MONOMER" "putative sugar kinase YgcE" ["YgcE"] "MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDNMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7443-MONOMER" "putative 7-carboxy-7-deazaguanine synthase QueE" ["QueE", "YgcF", "putative CDG synthase"] "MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1, "MG+2": 1} 0 "G7444-MONOMER" "TPM domain-containing protein YgcG" ["YgcG"] "MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIVVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAKGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7446-MONOMER" "glucarate dehydratase-related protein" ["GudX", "YgcY", "GlucDRP"] "MATQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTDNAGHTGIGEAPGGDVIYQTLVDAIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGAWTFELRVNAVAALEAALLDLLGKALNVPVCELLGPGKQREAITVLGYLFYIGDRTKTDLPYVENTPGNHEWYQLRHQKAMNSEAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDTVRALKKRFPDARITVDPNGAWLLDEAISLCKGLNDVLTYAEDPCGAEQGFSGREVMAEFRRATGLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLTWGCHSNNHFDISLAMFTHVGAAAPGNPTAIDTHWIWQEGDCRLTQNPLEIKNGKIAVPDAPGLGVELDWEQVQKAHEAYKRLPGGARNDAGPMQYLIPGWTFDRKRPVFGRH" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 -"G7448-MONOMER" "putative flavodoxin YqcA" ["YqcA"] "MAEIGIFVGTMYGNSLLVAEEAEAILTAQGHKATVFEDPELSDWLPYQDKYVLVVTSTTGQGDLPDSIVPLFQGIKDSLGFQPNLRYGVIALGDSSYVNFCNGGKQFDALLQEQSAQRVGEMLLIDASENPEPETESNPWVEQWGTLLS" [] [] 0 [] {} 0 +"G7448-MONOMER" "putative flavodoxin YqcA" ["YqcA"] "MAEIGIFVGTMYGNSLLVAEEAEAILTAQGHKATVFEDPELSDWLPYQDKYVLVVTSTTGQGDLPDSIVPLFQGIKDSLGFQPNLRYGVIALGDSSYVNFCNGGKQFDALLQEQSAQRVGEMLLIDASENPEPETESNPWVEQWGTLLS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7449-MONOMER" "tRNA pseudouridine65 synthase" ["TruC", "YqcB"] "MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLLPENERVEFSAPSGQDGEISS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G7450-MONOMER" "DUF446 domain-containing protein YqcC" ["YqcC"] "MTTHDRVRLQLQALEALLREHQHWRNDEPQPHQFNSTQPFFMDTMEPLEWLQWVLIPRMHDLLDNKQPLPGAFAVAPYYEMALATDHPQRALILAELEKLDALFADDAS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7451-MONOMER" "SecY-interacting protein" ["Ydr", "Syd"] "MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPLL" ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 @@ -2883,7 +2883,7 @@ "G7471-MONOMER" "TPR repeat-containing putative chaperone YgeG" ["YgeG"] "MSTETIEIFNNSDEWANQLKHALSKGENLALLHGLTPDILDRIYAYAFDYHEKGNITDAEIYYKFLCIYAFENHEYLKDFASVCQPKKKYQQAYDLYKLSYNYFPYDDYSVIYRMGQCQIGAKNIDNAMQCFYHIINNCEDDSVKSKAQAYIELLNDNSEDNG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7472-MONOMER" "putative transcriptional regulator YgeH" ["YgeH"] "MDLENKFSYHFLEGLTLTEDGILTQGNEQVYIPQKELGVLIVLLESAGHVVLKDMIIESVWKNIIVSDESLTRCIYSLRCIFEKIGYDRCIETIYRKGYRFSGQVFKTKINEDNTSDYSIAIFPFTTSLNTLDPLILNQELVQIISNKKIDGLYTYPMAATNFCNDHISQNSFLSRFKPDYFVTGRINQNNAVNTLYIELIDAKNLFLIASNHLPVDELHNTSQFIIDNILQTVHKPERSVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESESHRVIIDNILKLKQLTRICMR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G7473-MONOMER" "protein YgeI" ["YgeI"] "MTNPIGINNLSQSSNIANATGDEVVSLDKHINTSATDTDQIQAFIVSTWMAPFQNDMYSEDNPISPYYKIEW" [] [] 0 [] {} 0 -"G7474-MONOMER" "transglycosylase domain-containing protein Pbl" ["YgeJ", "Pbl"] "MRSPKVKFLTIFTFCIFITKMSFASNSCSNEAGTMFRIEPNLIKAIALVESNLKKDSIGKNRDKNNNIKSLDYWLMQINQMHIPLLKKRGIIKDERDLLDNPCLNIKIGTEILYNHFSRCGVTWQCLGTYNAGFAMDNQKKRQQYAPKYILYIPGLMN*TIVRLQQ" [] [] 0 [] {} 0 +"G7474-MONOMER" "transglycosylase domain-containing protein Pbl" ["YgeJ", "Pbl"] "MRSPKVKFLTIFTFCIFITKMSFASNSCSNEAGTMFRIEPNLIKAIALVESNLKKDSIGKNRDKNNNIKSLDYWLMQINQMHIPLLKKRGIIKDERDLLDNPCLNIKIGTEILYNHFSRCGVTWQCLGTYNAGFAMDNQKKRQQYAPKYILYIPGLMN*TIVRLQQ" [] ["CCO-PERI-BAC"] 0 [] {} 0 "G7475-MONOMER" "putative DNA-binding transcriptional regulator YgeK" ["YgeK"] "MGAELVKWVKSHKIDAHIITFVAKMPYIDSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMDCEKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMGVCTI" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7476-MONOMER" "protein YgeL" ["YgeL"] "MGKIKIVVSDQQPFMIDGIIGFLGHYPDLYEVVGGYKDLKKAIAECNKSTA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7478-MONOMER" "putative type III secretion system protein YgeN" ["YgeM", "YgeN"] "MRKKIEMSLIKSPANGVVIKRKISDGLKEIVSLKEKILLETTAKIQSIEEKREEKFIQGYYDGYTKGIIDEMDNFIPLISLLCSELEKKE*T**TI*RVYC*NLQKKLMFLSKFLKVG*QNYHQYQVL*ISIYLPVSKISLLK*SHILSTNQYGMSILHFMMISVLCFLPINLLLNLVRRNLWIIVSNI*LIIIVSPLTRLTKSANKPDII*LKKCLKHILWI*IILFWQALRT" [] [] 0 [] {} 0 @@ -2996,7 +2996,7 @@ "G7609-MONOMER" "DedA family protein YqjA" ["EcfL", "YqjA"] "MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVLIAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPVFLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7610-MONOMER" "modulator protein MzrA" ["EcfM", "YqjB", "MzrA"] "MQIPRMSLRQLAWSGAVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHRFG" ["CCO-MEMBRANE"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7611-MONOMER" "DUF1090 domain-containing protein YqjC" ["YqjC"] "MKYRIALAVSLFALSAGSYATTLCQEKEQNILKEISYAEKHQNQNRIDGLNKALSEVRANCSDSQLRADHQKKIAKQKDEVAERQQDLAEAKQKGDADKIAKRERKLAEAQEELKKLEARDY" [] [] 0 [] {} 0 -"G7612-MONOMER" "ribosome- and membrane-associated DUF883 domain-containing protein YqjD" ["YqjD", "inner membrane protein associated with the ribosome"] "MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAEQALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7612-MONOMER" "ribosome- and membrane-associated DUF883 domain-containing protein YqjD" ["YqjD", "ribosome modulation factor"] "MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAEQALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7613-MONOMER" "inner membrane protein YqjE" ["YqjE"] "MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEKANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIWTLRKSRKSTLLRHTRHELANDRQLLEEESREQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7614-MONOMER" "PF13997 family protein YqjK" ["YqjK"] "MSSKVERERRKAQLLSQIQQQRLDLSASRREWLETTGAYDRRWNMLLSLRSWALVGSSVMAIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG" ["CCO-CYTOSOL"] [] 0 [] {} 0 "G7615-MONOMER" "DoxX family protein" ["YqjF"] "MKKLEDVGVLVARILMPILFITAGWGKITGYAGTQQYMEAMGVPGFMLPLVILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSNFAEGVNSLMFMKNLTISGGFLLLAITGPGAYSIDRLLNKKW" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -3012,7 +3012,7 @@ "G7630-MONOMER" "DNA-binding transcriptional repressor AgaR" ["YhaW", "AgaR"] "MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEPSVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLEGLRKAGVEVILVGE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7631-MONOMER" "putative tagatose-1,6-bisphosphate aldolase 1 chaperone" ["YhaX", "KbaZ", "AgaZ"] "MKHLTEMVRQHKAGKTNGIYAVCSAHPLVLEAAIRYASANQTPLLIEATSNQVDQFGGYTGMTPADFRGFVCQLADSLNFPQDALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGFKKIHLDCSMSCQDDPIPLTDDIVAERAARLAKVAEETCLEHFGEADLEYVIGTEVPVPGGAHETLSELAVTTPDAARATLEAHRHAFEKQGLNAIWPRIIALVVQPGVEFDHTNVIDYQPAKASALSQMVENYETLIFEAHSTDYQTPQSLRQLVIDHFAILKVGPALTFALREALFSLAAIEEELVPAKACSGLRQVLEDVMLDRPEYWQSHYHGDGNARRLARGYSYSDRVRYYWPDSQIDDAFAHLVRNLADSPIPLPLISQYLPLQYVKVRSGELQPTPRELIINHIQDILAQYHTACEGQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7632-MONOMER" "N-acetyl-D-galactosamine specific PTS enzyme IIB component" ["YhaY", "AgaV", "EIIBAga", "EIIBGalNAc", "Enzyme IIBAga", "Enzyme IIBGalNAc"] "MPNIVLSRIDERLIHGQVGVQWVGFAGANLVLVANDEVAEDPVQQNLMEMVLAEGIAVRFWTLQKVIDNIHRAADRQKILLVCKTPADFLTLVKGGVPVNRINVGNMHYANGKQQIAKTVSVDAGDIAAFNDLKTAGVECFVQGVPTEPAVDLFKLL" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G7633-MONOMER" "N-acetyl-D-galactosamine specific PTS truncated enzyme IIC component" ["YhaZ", "AgaW", "EIIC'Aga", "EIIC'GalNAc", "Enzyme IIC'Aga", "Enzyme IIC'GalNAc"] "MEISLLQAFALGIIAFIAGLDMFNGLTHMHRPVVLGPLVGLVLGDLHTGILTGGTLELVWMGLAPLAGAQPPNVIIGTIVGTAFAITTGVKPDVAVGVAVPFAVAVQMGITFLFSVMSGVMSRCDLATNPRRI" [] [] 0 [] {} 1 +"G7633-MONOMER" "N-acetyl-D-galactosamine specific PTS truncated enzyme IIC component" ["YhaZ", "AgaW", "EIIC'Aga", "EIIC'GalNAc", "Enzyme IIC'Aga", "Enzyme IIC'GalNAc"] "MEISLLQAFALGIIAFIAGLDMFNGLTHMHRPVVLGPLVGLVLGDLHTGILTGGTLELVWMGLAPLAGAQPPNVIIGTIVGTAFAITTGVKPDVAVGVAVPFAVAVQMGITFLFSVMSGVMSRCDLATNPRRI" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 "G7634-MONOMER" "putative galactosamine-6-phosphate deaminase/isomerase" ["YraB", "AgaS"] "MPENYTPAAAATGTWTEEEIRHQPRAWIRSLTNIDALRSALNNFLEPLLRKENLRIILTGAGTSAFIGDIIAPWLASHTGKNFSAVPTTDLVTNPMDYLNPAHPLLLISFGRSGNSPESVAAVELANQFVPECYHLPITCNEAGALYQNAINSDNAFALLMPAETHDRGFAMTSSITTMMASCLAVFAPETINSQTFRDVADRCQAILTSLGDFSEGVFGYAPWKRIVYLGSGGLQGAARESALKVLELTAGKLAAFYDSPTGFRHGPKSLVDDETLVVVFVSSHPYTRQYDLDLLAELRRDNQAMRVIAIAAESSDIVAAGPHIILPPSRHFIDVEQAFCFLMYAQTFALMQSLHMGNTPDTPSASGTVNRVVQGVIIHPWQA" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "G7636-MONOMER" "putative deaminase AgaI" ["YraG", "AgaI"] "MERGTASGGASLLKEFHPVQTLQQVENYTALSERASEYLLAVIRSKPNAVICLATGATPLLTYHYLVEKIHQQQVDVSQLTFVKLDEWVDLPLTMPGTCETFLQQHIVQPLGLREDQLISFRSEEINETECERVTNLIARKGGLDLCVLGLGKNGHLGLNEPGESLQPACHISQLDARTQQHEMLKTAGRPVTRGITLGLKDILNAREVLLLVTGEGKQDATDRFLTAKVSTAIPASFLWLHSNFICLINT" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7637-MONOMER" "putative fimbrial protein YraH" ["YraH"] "MNKVTKTAIAGLLALFAGNAAATDGEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFRNIGERSPKIPFTIPLVNCPMTGWEHDNGNVEASFRLWLETRDNGTVPNFPNLAKVGSFAGIAATGVGIRIDDAESGNIMPLNAMGNDNTVYQIPAESNGIVNVDLIAYYVSTVVPSEITPGEADAIVNVTLDYR" [] ["CCO-EXTRACELLULAR", "CCO-PILUS"] 0 [] {} 0 @@ -3147,7 +3147,7 @@ "G7834-MONOMER" "DUF4156 domain-containing lipoprotein YjeI" ["YjeI"] "MHVKYLAGIVGAALLMAGCSSSNELSAAGQSVRIVDEQPGAECQLIGTATGKQSNWLSGQHGEEGGSMRGAANDLRNQAAAMGGNVIYGISSPSQGMLSSFVPTDSQIIGQVYKCPN" [] [] 0 [] {} 0 "G7835-MONOMER" "protein YjeJ" ["YjeJ"] "MAISIKGVNTGVIRKSNNFIALALKIKEPRNKESLFFMSVMELRDLLIALESRLHQKHKLDAAAHLQYEQARDKVIKKMAENIPEILVDELKNADINRRVNTLELTDNQGENLTFVLTLHDGSKCELVVNELQIEMLARAIIHAINNAEMRELALRITSLLDFLPLYDVDCQDNGNLEYDTYSQPEWKHNLFDHYLAVLYRFKDESGKEQFSGAVVKTREATPGKEIEAITRRMLDFSPRLKKLAGVPCQVYVRTVAANNAQPLTQDQCLRALHHLRVQSTSKTAPQAK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7836-MONOMER" "lysine 2,3-aminomutase" ["EpmB", "YjeK"] "MAHIVTLNTPSREDWLTQLADVVTDPDELLRLLNIDAEEKLLAGRSAKKLFALRVPRSFIDRMEKGNPDDPLLRQVLTSQDEFVIAPGFSTDPLEEQHSVVPGLLHKYHNRALLLVKGGCAVNCRYCFRRHFPYAENQGNKRNWQTALEYVAAHPELDEMIFSGGDPLMAKDHELDWLLTQLEAIPHIKRLRIHSRLPIVIPARITEALVECFARSTLQILLVNHINHANEVDETFRQAMAKLRRVGVTLLNQSVLLRDVNDNAQTLANLSNALFDAGVMPYYLHVLDKVQGAAHFMVSDDEARQIMRELLTLVSGYLVPKLAREIGGEPSKTPLDLQLRQQ" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 0 -"G7837-MONOMER" "outer membrane lipoprotein Blc" ["YjeL", "Blc", "outer membrane lipoprotein (lipocalin)"] "MRLLPLVAAATAAFLVVACSSPTPPRGVTVVNNFDAKRYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTGAPTRAALKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSKFIWVQQPGS" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"G7837-MONOMER" "outer membrane lipoprotein Blc" ["YjeL", "Blc", "outer membrane lipoprotein (lipocalin)"] "MRLLPLVAAATAAFLVVACSSPTPPRGVTVVNNFDAKRYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTGAPTRAALKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSKFIWVQQPGS" [] ["CCO-CYTOSOL", "CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 "G7838-MONOMER" "uncharacterized protein YjeN" ["YjeN"] "MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDGKRWGNLPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKRPVTL" [] [] 0 [] {} 0 "G7839-MONOMER" "DUF2645 domain-containing inner membrane protein YjeO" ["YjeO"] "MSARMFVLCCIWFIVAFLWITITSALDKEWMIDGRGINNVCDVLMYLEEDDTRDVGVIMTLPLFFPFLWFALWRKKRGWFMYATALAIFGYWLWQFFLRYQFCL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7840-MONOMER" "miniconductance mechanosensitive channel MscM" ["YjeP", "MscM"] "MRLIITFLMAWCLSWGAYAATAPDSKQITQELEQAKAAKPAQPEVVEALQSALNALEERKGSLERIKQYQQVIDNYPKLSATLRAQLNNMRDEPRSVSPGMSTDALNQEILQVSSQLLDKSRQAQQEQERAREIADSLNQLPQQQTDARRQLNEIERRLGTLTGNTPLNQAQNFALQSDSARLKALVDELELAQLSANNRQELARLRSELAEKESQQLDAYLQALRNQLNSQRQLEAERALESTELLAENSADLPKDIVAQFKINRELSAALNQQAQRMDLVASQQRQAASQTLQVRQALNTLREQSQWLGSSNLLGEALRAQVARLPEMPKPQQLDTEMAQLRVQRLRYEDLLNKQPLLRQIHQADGQPLTAEQNRILEAQLRTQRELLNSLLQGGDTLLLELTKLKVSNGQLEDALKEVNEATHRYLFWTSDVRPMTIAWPLEIAQDLRRLISLDTFSQLGKASVMMLTSKETILPLFGALILVGCSIYSRRYFTRFLERSAAKVGKVTQDHFWLTLRTLFWSILVASPLPVLWMTLGYGLREAWPYPLAVAIGDGVTATVPLLWVVMICATFARPNGLFIAHFGWPRERVSRGMRYYLMSIGLIVPLIMALMMFDNLDDREFSGSLGRLCFILICGALAVVTLSLKKAGIPLYLNKEGSGDNITNHMLWNMMIGAPLVAILASAVGYLATAQALLARLETSVAIWFLLLVVYHVIRRWMLIQRRRLAFDRAKHRRAEMLAQRARGEEEAHHHSSPEGAIEVDESEVDLDAISAQSLRLVRSILMLIALLSVIVLWSEIHSAFGFLENISLWDVTSTVQGVESLEPITLGAVLIAILVFIITTQLVRNLPALLELAILQHLDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEIIVPNKAFITEQFINWSLSDSVTRVVLTIPAPADANSEEVTEILLTAARRCSLVIDNPAPEVFLVDLQQGIQIFELRIYAAEMGHRMPLRHEIHQLILAGFHAHGIDMPFPPFQMRLESLNGKQTGRTLTSAGKGRQAGSL" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 @@ -3198,12 +3198,12 @@ "G7889-MONOMER" "lipopolysaccharide transport system protein LptG" ["YjgQ"] "MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "G7890-MONOMER" "DUF853 domain-containing protein YjgR" ["YjgR"] "MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAQAGTVSEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDEVDRESAYEMLQKGFQASTEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR" [] [] 0 [] {} 0 "G7891-MONOMER" "DNA-binding transcriptional dual regulator IdnR" ["GntH", "YjgS", "IdnR"] "MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSEHNYQTLIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLEKRVRHKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G7898-MONOMER" "KpLE2 phage-like element; putative phosphoethanolamine transferase YjgX, N-terminal fragment" ["YjgX", "YjgY"] "MNRPVFPVYHFLVSAAILVFVVIFWRTHHRDHRNWLALRLFVLCSVNRWPLRMVKGTVVGTTDTLREMQRYEQLSSTGLTTGKSSREHRYMIRLLLSLVRVCAGIICQCMTIPYQPHRG*IRHPVYLLTIIPRQPPVQCLP*AGH*FMTMSRTLIPATMWWRWQQKQDTAHGGYPIKENWGSMTHASLLLLLMRSMPLSSRKAASLPVKQMTNCCYRKQNVRWRIHPLRR*FSCT*WVLIQIRVTALTPSRIITWSSIPEKLPVTSPASVNWITFLASLMVSFAGTHVISPCFTFLALGCRSATVPILFIIMVMCREATVCH*LLPPVT*RLISPSVEKSVPVISQVFFSG*PVFVLKIYRHSIR*QTKITNLLWFLRERGIYRQTV*NLSHLFFLIT" [] [] 0 [] {} 0 +"G7898-MONOMER" "KpLE2 phage-like element; putative phosphoethanolamine transferase YjgX, N-terminal fragment" ["YjgX", "YjgY"] "MNRPVFPVYHFLVSAAILVFVVIFWRTHHRDHRNWLALRLFVLCSVNRWPLRMVKGTVVGTTDTLREMQRYEQLSSTGLTTGKSSREHRYMIRLLLSLVRVCAGIICQCMTIPYQPHRG*IRHPVYLLTIIPRQPPVQCLP*AGH*FMTMSRTLIPATMWWRWQQKQDTAHGGYPIKENWGSMTHASLLLLLMRSMPLSSRKAASLPVKQMTNCCYRKQNVRWRIHPLRR*FSCT*WVLIQIRVTALTPSRIITWSSIPEKLPVTSPASVNWITFLASLMVSFAGTHVISPCFTFLALGCRSATVPILFIIMVMCREATVCH*LLPPVT*RLISPSVEKSVPVISQVFFSG*PVFVLKIYRHSIR*QTKITNLLWFLRERGIYRQTV*NLSHLFFLIT" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7899-MONOMER" "KpLE2 phage-like element; uncharacterized protein YjgZ" ["YjgZ"] "MLPPGPLLVLPVGARVSRGGLSPTERSCISRHTQQYLRACYPSGRYGTKGLVVRWFTGGREPRGTDNEPSGNRSLEPHAWLTDVLTRLPEWPEERLAELLPLEGFTFFG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7900-MONOMER" "KpLE2 phage-like element; IS4 putative transposase" ["InsG"] "MHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQARQRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTHAGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGYYSLGLLNAWSLAGEHRHWMIPLRKGAQYEEIRKLGKGDHLVKLKTSPQARKKWPGLGNEVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMGDLYSHRWEIELGYREIKQTMQRSRLTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELMRDLASMGQLVKLPTRRERAFPRVVKERPWKYPTAPKKSQSVA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7901-MONOMER" "KpLE2 phage-like element; 2,7-anhydro-N-acetylneuraminate hydratase" ["NanY", "YjhC", "KpLE2 phage-like element; putative sialic acid oxidoreductase YjhC", "KpLE2 phage-like element; N-acetylneuraminate dehydratase"] "MINYGVVGVGYFGAELARFMNMHDNAKITCVYDPENGENIARELQCINMSSLDALVSSKLVDCVIVATPNYLHKEPVIKAAKNKKHVFCEKPIALSYEDCVDMVKACKEAGVTFMAGHIMNFFNGVQYARKLIKEGVIGEILSCHTKRNGWENKQERLSWKKMKEQSGGHLYHHIHELDCVQHLLGEIPETVTMIGGNLAHSGPGFGNEDDMLFMTLEFPSGKLATLEWGSAFNWPEHYVIINGTKGSIKIDMQETAGSLRIGGQTKHFLVHETQEEDDDRRKGNMTSEMDGAIAYGHPGKKTPLWLASLIRKETLFLHNILCGAKPEEDYIDLLNGEAAMSAIATADAATLSRSQDRKVKISEIIKHTSVM" [] [] 0 [] {} 1 "G7902-MONOMER" "KpLE2 phage-like element; surface adhesin E-like protein" ["YjhD"] "MNCETKQRTQFECIYFSQYWAKGDFIAKRAPIGQWEPYSEESLLGIIVTSVCRIKVAMLKPEPPRDPHIPLMGDFN" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7903-MONOMER" "KpLE2 phage-like element; putative membrane protein (pseudogene)" ["YjhE"] "MLADELTIGPIRAVPMDITPKYVGIASGLMNAGSAVADIISPIAFGIIIDKTGNWSLPFYGSVALLVIGIFLTFFMRPDKSL" [] ["CCO-MEMBRANE"] 0 [] {} 0 +"G7903-MONOMER" "KpLE2 phage-like element; putative membrane protein (pseudogene)" ["YjhE"] "MLADELTIGPIRAVPMDITPKYVGIASGLMNAGSAVADIISPIAFGIIIDKTGNWSLPFYGSVALLVIGIFLTFFMRPDKSL" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 "G7904-MONOMER" "KpLE2 phage-like element; IS911B regulator fragment" ["YjhW", "InsO", "InsN2"] "MKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRKLRKKLQRIEMENEILKKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPVGVMFQSDQGSHYTSRQFRQLLWRYRIRQSMSRRGNCWDNSPMERFFRSLKNEWVPATGYVSFSDAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNAEASFS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7907-MONOMER" "KpLE2 phage-like element; putative uncharacterized protein YjhV" ["YjhV"] "MPEGSRGRLAVAVAGDHPAAVQVTMTLVNDTGFDPVFSGSIAESWRQQPCTPSYCCDWEAATMLRAFPLAKKGEGRARLPSLYASFGKLGETPTHEDIIDNNRSINWPV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7908-MONOMER" "KpLE2 phage-like element; IS1 repressor protein InsA" ["InsA7"] "MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSPCRKTWQLQFTYTASQPGKHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -3218,7 +3218,7 @@ "G7917-MONOMER" "KpLE2 phage-like element; putative acetyltransferase TopAI antitoxin YjhQ" ["YjhQ", "KpLE2 phage-like element; antitoxin of the TopAI-YjhQ toxin-antitoxin system; putative acetyltransferase"] "MTVHHFTFHITDKSDASDIREVETRAFGFSKEADLVASLLEDESARPALSLLARYEGKAVGHILFTRATFKGEMDSPLMHILAPLAVIPEYQGMGVGGRLIRTGIEHLRLMGCQTVFVLGHATYYPRHGFEPCAGDKGYPAPYPIPEEHKACWMMQSLTAQPMTLTGHIRCADPDETGALT" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7918-MONOMER" "KpLE2 phage-like element; PLD-like domain-containing protein YjhR" ["YjhR", "KpLE2 phage-like element; putative frameshift suppressor"] "MGYLHIDGRGMKPNGGSRHNPLEAETIAAWLVAHKDDIERHYGEPLYKVVGVVTPFSAQVNAIKMSLRKLEINGKDEQGLLTVGTVHSLQGAERAIVLFSPVYSKHEDGRFLDSNSTILNVAVSRAKDSFLVFGDMDLIEMQPAFSPRGLLAKYLFSSDNNALQFEFQKRQDLISAHTQISTLHGVEQHDEFLNKTLAGAQKKITIISPWLSWQKVEQTGFLASMALARSRGIDITVVTDKNCNIAHVDDDKRQEKQHLLNDAVEKLNKMGIATKLVNRVHSKIVIEDEELLCVGSFNWFSATREDKYQRYDTSLVYRGEGVKNEIKAIYGSLDQRQL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7919-MONOMER" "N-acetyl-9-O-acetylneuraminate esterase" ["YjhS", "NanS"] "MNAIISPDYYYVLTVAGQSNAMAYGEGLPLPDREDAPHPRIKQLARFAHTHPGGPPCHFNDIIPLTHCPHDVQDMQGYHHPLATNHQTQYGTVGQALHIARKLLPFIPDNAGILIVPCCRGGSAFTAGSEGTYSERHGASHDACRWGTDTPLYQDLVSRTRAALAKNPQNKFLGACWMQGEFDLMTSDYASHPQHFNHMVEAFRRDLKQYHSQLNNITDAPWFCGDTTWYWKENFPHSYEAIYGNYQNNVLANIIFVDFQQQGERGLTNAPDEDPDDLSTGYYGSAYRSPENWTTALRSSHFSTAARRGIISDRFVEAILQFWRER" [] ["CCO-PERI-BAC"] 0 [] {} 0 -"G7920-MONOMER" "N-acetylneuraminate mutarotase" ["YjhT", "NanM"] "MNKTITALAIMMASFAANASVLPETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 +"G7920-MONOMER" "N-acetylneuraminate mutarotase" ["YjhT", "NanM"] "MNKTITALAIMMASFAANASVLPETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN" ["CCO-PERI-BAC"] ["CCO-CYTOSOL", "CCO-PERI-BAC"] 0 [] {} 1 "G7921-MONOMER" "N-acetylneuraminate outer membrane channel" ["NanC", "YjhA"] "MKKAKILSGVLLLCFSSPLISQAATLDVRGGYRSGSHAYETRLKVSEGWQNGWWASMESNTWNTIHDNKKENAALNDVQVEVNYAIKLDDQWTVRPGMLTHFSSNGTRYGPYVKLSWDATKDLNFGIRYRYDWKAYRQQDLSGDMSRDNVHRWDGYVTYHINSDFTFAWQTTLYSKQNDYRYANHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGVYNGRDNLSENSYRIGVSFKL" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 "G7922-MONOMER" "DUF2686 domain-containing protein YjiC" ["YjiC"] "MSMPLSNALQSQIITDAHFLHHPIVDSEFTRKLKYARMDSENIYLPPLTRGNNHNYDGKSVVEIRKLDISKEPWPFNYVTGACRESDGITTTGRMLYRNLKITSALDEIYGGICKKAHATTELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGCNVPGYAGTTIGYISTLPASQAKRWTNEQPRIDIYIDQIMTVTGVANSSGFALAALLNANIELGNDPIIGIEAYPGTAEIHAKMGYKVIPGDENAPLKRMTLQPSSLPELFELKNGEWNYIGK" [] [] 0 [] {} 0 "G7923-MONOMER" "anti-adaptor protein IraD" ["YjiD", "IraD", "anti-adaptor protein IraD inhibitor of σS proteolysis"] "MMRQSLQAVLPEISGNKTSSLRKSVCSDLLTLFNSPHSALPSLLVSGMPEWQVHNPSDKHLQSWYCRQLRSALLFHEPRIAALQVNLKEAYCHTLAISLEIMLYHDDEPLTFDLVWDNGGWRSATLENVS" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -3327,10 +3327,10 @@ "GLYCOGENSYN-MONOMER" "glycogen synthase" ["GlgA"] "MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "GLYCOPHOSPHORYL-MONOMER" "glycogen phosphorylase" ["GlgY", "GlgP"] "MNAPFTYSSPTLSVEALKHSIAYKLMFTIGKDPVVANKHEWLNATLFAVRDRLVERWLRSNRAQLSQETRQVYYLSMEFLIGRTLSNAMLSLGIYEDVQGALEAMGLNLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNIVNGSQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRIQQEGKKTRWIETEEILGVAYDQIIPGYDTDATNTLRLWSAQASSEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSSTIQDILSRHYQLHKTYDNLADKIAIHLNDTHPVLSIPEMMRLLIDEHQFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYFLKTLQEQYPNDTDLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLFADFAKIFPGRFTNVTNGVTPRRWLAVANPSLSAVLDEHLGRNWRTDLSLLNELQQHCDFPMVNHAVHQAKLENKKRLAEYIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFGGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLDHVGADNIFIFGNTAEEVEELRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEDPGRYRDLVDSLINFGDHYQVLADYRSYVDCQDKVDELYELQEEWTAKAMLNIANMGYFSSDRTIKEYADHIWHIDPVRL" [] ["CCO-CYTOSOL"] 0 [] {} 1 "GLYCPDIESTER-CYTO-MONOMER" "glycerophosphodiester phosphodiesterase UgpQ" ["UgpQ", "glycerophosphodiester phosphodiesterase, cytosolic"] "MSNWPYPRIVAHRGGGKLAPENTLASIDVGAKYGHKMIEFDAKLSKDGEIFLLHDDNLERTSNGWGVAGELNWQDLLRVDAGSWYSKMFKGEPLPLLSQVAERCREHGMMANIEIKPTTGTGPLTGKMVALAARELWAGMTPPLLSSFEIDALEAAQQAAPELPRGLLLDEWRDDWRELTARLGCVSIHLNHKLLNKARVMQLKDAGLRILVYTVNKPQRAAELLRWGVDCICTDAIDVIGPNFTAQ" [] ["CCO-CYTOSOL"] 1 [] {} 0 -"GLYCPDIESTER-PERI-MONOMER" "glycerophosphoryl diester phosphodiesterase GlpQ" ["GlpQ", "glycerophosphoryl diester phosphodiesterase, periplasmic"] "MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {"CA+2": 1} 1 +"GLYCPDIESTER-PERI-MONOMER" "glycerophosphoryl diester phosphodiesterase GlpQ" ["GlpQ", "glycerophosphoryl diester phosphodiesterase, periplasmic"] "MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE" ["CCO-PERI-BAC"] ["CCO-VACUOLE", "CCO-PERI-BAC"] 0 [] {"CA+2": 1} 1 "GLYCRIBONUCSYN-MONOMER" null ["PurD"] "MKVLVIGNGGREHALAWKAAQSPLVETVFVAPGNAGTALEPALQNVAIGVTDIPALLDFAQNEKIDLTIVGPEAPLVKGVVDTFRAAGLKIFGPTAGAAQLEGSKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVTDDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQGNPKVIEFNCRFGDPETQPIMLRMKSDLVELCLAACESKLDEKTSEWDERASLGVVMAAGGYPGDYRTGDVIHGLPLEEVAGGKVFHAGTKLADDEQVVTNGGRVLCVTALGHTVAEAQKRAYALMTDIHWDDCFCRKDIGWRAIEREQN" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "GLYOCARBOLIG-MONOMER" "glyoxylate carboligase" ["Gcl"] "MAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFDVQVAEIEFDPDMYEPLPVYKPAASRMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQEMQKAGRLPCRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVILERVTNISMGSELDNVMEFEDIADNAADAPTETCFMHYE" [] ["CCO-CYTOSOL"] 1 [] {} 1 -"GLYOHMETRANS-MONOMER" "serine hydroxymethyltransferase" ["GlyA"] "MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDSINDEAVIERIKGKVLDICARYPVYA" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 +"GLYOHMETRANS-MONOMER" "serine hydroxymethyltransferase" ["GlyA", "SHMT"] "MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDSINDEAVIERIKGKVLDICARYPVYA" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "GLYOXI-MONOMER" "lactoylglutathione lyase" ["GloA", "glyoxalase I"] "MRLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAGRGLGN" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"NI+2": 1} 1 "GLYOXII-MONOMER" "hydroxyacylglutathione hydrolase GloB" ["YafR", "GloB", "glyoxalase II"] "MNLNSIPAFDDNYIWVLNDEAGRCLIVDPGDAEPVLNAIAANNWQPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQDKGTTQVVKDGETAFVLGHEFSVIATPGHTLGHICYFSKPYLFCGDTLFSGGCGRLFEGTASQMYQSLKKLSALPDDTLVCCAHEYTLSNMKFALSILPHDLSINDYYRKVKELRAKNQITLPVILKNERQINVFLRTEDIDLINVINEETLLQQPEERFAWLRSKKDRF" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 2} 0 "GLYQ-MONOMER" "glycine—tRNA ligase subunit α" ["CfcA", "GlyQ", "GlyS(A)"] "MQKFDTRTFQGLILTLQDYWARQGCTIVQPLDMEVGAGTSHPMTCLRELGPEPMAAAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLGSLKELGMDPTIHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVTGEITYGLERLAMYIQGVDSVYDLVWSDGPLGKTTYGDVFHQNEVEQSTYNFEYADVDFLFTCFEQYEKEAQQLLALENPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILRIRTLTKAVAEAYYASREALGFPMCNKDK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -3377,7 +3377,7 @@ "HMP-KIN-MONOMER" "protein/nucleic acid deglycase 3" ["YajL", "ThiJ", "chaperone, protecting proteins in response to oxidative stress", "Maillard deglycase 3"] "MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMAAGIYNYYE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "HMP-P-KIN-MONOMER" "bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase" ["ThiJ", "ThiA", "ThiD"] "MKRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAQNTRGVQSVYRIEPDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRYQIQNVVLDTVMLAKSGDPLLSPSAVATLRSRLLPQVSLITPNLPEAAALLDAPHARTEQEMLEQGRSLLAMGCGAVLMKGGHLDDEQSPDWLFTREGEQRFTAPRIMTKNTHGTGCTLSAALAALRPRHTNWADTVQEAKSWLSSALAQADTLEVGHGIGPVHHFHAWW" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "HOLO-ACP-SYNTH-MONOMER" "holo-[acyl-carrier-protein] synthase" ["AcpS", "Dpj", "AcpSholo"] "MAILGLGTDIVEIARIEAVIARSGDRLARRVLSDNEWAIWKTHHQPVRFLAKRFAVKEAAAKAFGTGIRNGLAFNQFEVFNDELGKPRLRLWGEALKLAEKLGVANMHVTLADERHYACATVIIES" [] ["CCO-CYTOSOL"] 1 [] {"MG+2": 1} 1 -"HOMOCYSMET-MONOMER" null ["MetE"] "MTILNHTLGFPRVGLRRELKKAQESYWAGNSTREELLAVGRELRARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNKDGSVDIDTLFRIGRGRAPTGEPAAAAEMTKWFNTNYHYMVPEFVKGQQFKLTWTQLLDEVDEALALGHKVKPVLLGPVTWLWLGKVKGEQFDRLSLLNDILPVYQQVLAELAKRGIEWVQIDEPALVLELPQAWLDAYKPAYDALQGQVKLLLTTYFEGVTPNLDTITALPVQGLHVDLVHGKDDVAELHKRLPSDWLLSAGLINGRNVWRADLTEKYAQIKDIVGKRDLWVASSCSLLHSPIDLSVETRLDAEVKSWFAFALQKCHELALLRDALNSGDTAALAEWSAPIQARRHSTRVHNPAVEKRLAAITAQDSQRANVYEVRAEAQRARFKLPAWPTTTIGSFPQTTEIRTLRLDFKKGNLDANNYRTGIAEHIKQAIVEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGWVQSYGSRCVKPPIVIGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLQWGVEAFRINAAVAKDDTQIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMELLESFEEFDYPNEIGPGVYDIHSPNVPSVEWIEALLKKAAKRIPAERLWVNPDCGLKTRGWPETRAALANMVQAAQNLRRG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"ZN+2": 1} 0 +"HOMOCYSMET-MONOMER" null ["MetE"] "MTILNHTLGFPRVGLRRELKKAQESYWAGNSTREELLAVGRELRARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNKDGSVDIDTLFRIGRGRAPTGEPAAAAEMTKWFNTNYHYMVPEFVKGQQFKLTWTQLLDEVDEALALGHKVKPVLLGPVTWLWLGKVKGEQFDRLSLLNDILPVYQQVLAELAKRGIEWVQIDEPALVLELPQAWLDAYKPAYDALQGQVKLLLTTYFEGVTPNLDTITALPVQGLHVDLVHGKDDVAELHKRLPSDWLLSAGLINGRNVWRADLTEKYAQIKDIVGKRDLWVASSCSLLHSPIDLSVETRLDAEVKSWFAFALQKCHELALLRDALNSGDTAALAEWSAPIQARRHSTRVHNPAVEKRLAAITAQDSQRANVYEVRAEAQRARFKLPAWPTTTIGSFPQTTEIRTLRLDFKKGNLDANNYRTGIAEHIKQAIVEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGWVQSYGSRCVKPPIVIGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLQWGVEAFRINAAVAKDDTQIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMELLESFEEFDYPNEIGPGVYDIHSPNVPSVEWIEALLKKAAKRIPAERLWVNPDCGLKTRGWPETRAALANMVQAAQNLRRG" ["CCO-CYTOSOL"] ["CCO-EXTRACELLULAR", "CCO-CYTOSOL"] 1 [] {"ZN+2": 1} 0 "HOMOCYSMETB12-MONOMER" "cobalamin-dependent methionine synthase" ["MetH"] "MSSKVEQLRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFADWPCDLKGNNDLLVLSKPEVIAAIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINFAAAKLARACADEWTARTPEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYRESTKALVEGGADLILIETVFDTLNAKAAVFAVKTEFEALGVELPIMISGTITDASGRTLSGQTTEAFYNSLRHAEALTFGLNCALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYDLDADTMAKQIREWAQAGFLNIVGGCCGTTPQHIAAMSRAVEGLAPRKLPEIPVACRLSGLEPLNIGEDSLFVNVGERTNVTGSAKFKRLIKEEKYSEALDVARQQVENGAQIIDINMDEGMLDAEAAMVRFLNLIAGEPDIARVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMKEGVDAFIHHAKLLRRYGAAVVVMAFDEQGQADTRARKIEICRRAYKILTEEVGFPPEDIIFDPNIFAVATGIEEHNNYAQDFIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAGQLAIYDDLPAELRDAVEDVILNRRDDGTERLLELAEKYRGSKTDDTANAQQAEWRSWEVNKRLEYSLVKGITEFIEQDTEEARQQATRPIEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFIEASKEQGKTNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNASRTVGVVAALLSDTQRDDFVARTRKEYETVRIQHGRKKPRTPPVTLEAARDNDFAFDWQAYTPPVAHRLGVQEVEASIETLRNYIDWTPFFMTWSLAGKYPRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNPRGVVGLFPANRVGDDIEIYRDETRTHVINVSHHLRQQTEKTGFANYCLADFVAPKLSGKADYIGAFAVTGGLEEDALADAFEAQHDDYNKIMVKALADRLAEAFAEYLHERVRKVYWGYAPNENLSNEELIRENYQGIRPAPGYPACPEHTEKATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQVEDYARRKGMSVTEVERWLAPNLGYDAD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"ADENOSYLCOBALAMIN": 1, "MG+2": 1, "ZN+2": 1} 0 "HOMOSERKIN-MONOMER" "homoserine kinase" ["ThrB"] "MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAETFSLNNLGRFADKLPSEPRENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDIISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPELAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPETAQRVADWLGKNYLQNQEGFVHICRLDTAGARVLEN" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "HOMSUCTRAN-MONOMER" "homoserine O-succinyltransferase" ["MetA"] "MPIRVPDELPAVNFLREENVFVMTTSRASGQEIRPLKVLILNLMPKKIETENQFLRLLSNSPLQVDIQLLRIDSRESRNTPAEHLNNFYCNFEDIQDQNFDGLIVTGAPLGLVEFNDVAYWPQIKQVLEWSKDHVTSTLFVCWAVQAALNILYGIPKQTRTEKLSGVYEHHILHPHALLTRGFDDSFLAPHSRYADFPAALIRDYTDLEILAETEEGDAYLFASKDKRIAFVTGHPEYDAQTLAQEFFRDVEAGLDPDVPYNYFPHNDPQNTPRASWRSHGNLLFTNWLNYYVYQITPYDLRHMNPTLD" [] ["CCO-CYTOSOL"] 1 [] {} 1 @@ -3405,7 +3405,7 @@ "IMP-DEHYDROG-MONOMER" "inosine 5'-monophosphate dehydrogenase" ["GuaR", "GuaB"] "MLRIAKEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPMLSAAMDTVTEARLAIALAQEGGIGFIHKNMSIERQAEEVRRVKKHESGVVTDPQTVLPTTTLREVKELTERNGFAGYPVVTEENELVGIITGRDVRFVTDLNQPVSVYMTPKERLVTVREGEAREVVLAKMHEKRVEKALVVDDEFHLIGMITVKDFQKAERKPNACKDEQGRLRVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGGNVATAAGARALAEAGCSAVKVGIGPGSICTTRIVTGVGVPQITAVADAVEALEGTGIPVIADGGIRFSGDIAKAIAAGASAVMVGSMLAGTEESPGEIELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSDNAADKLVPEGIEGRVAYKGRLKEIIHQQMGGLRSCMGLTGCGTIDELRTKAEFVRISGAGIQESHVHDVTITKESPNYRLGS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"K+": 1} 1 "INORGPYROPHOSPHAT-MONOMER" "inorganic pyrophosphatase" ["Ppa"] "MSLLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEIVASFERAKNK" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MG+2": 2} 1 "IPPISOM-MONOMER" "isopentenyl-diphosphate Δ-isomerase" ["YgfV", "Idi"] "MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGIDATPWAFSPWMVMQATNREARKRLSAFTQLK" [] ["CCO-CYTOSOL"] 0 [] {"MN+2": 1, "MG+2": 1} 0 -"ISOCIT-LYASE-MONOMER" "isocitrate lyase" ["Icl", "AceA"] "MKTRTQQIEELQKEWTQPRWEGITRPYSAEDVVKLRGSVNPECTLAQLGAAKMWRLLHGESKKGYINSLGALTGGQALQQAKAGIEAVYLSGWQVAADANLAASMYPDQSLYPANSVPAVVERINNTFRRADQIQWSAGIEPGDPRYVDYFLPIVADAEAGFGGVLNAFELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARLAADVTGVPTLLVARTDADAADLITSDCDPYDSEFITGERTSEGFFRTHAGIEQAISRGLAYAPYADLVWCETSTPDLELARRFAQAIHAKYPGKLLAYNCSPSFNWQKNLDDKTIASFQQQLSDMGYKFQFITLAGIHSMWFNMFDLANAYAQGEGMKHYVEKVQQPEFAAAKDGYTFVSHQQEVGTGYFDKVTTIIQGGTSSVTALTGSTEESQF" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MG+2": 1} 1 +"ISOCIT-LYASE-MONOMER" "isocitrate lyase" ["Icl", "AceA"] "MKTRTQQIEELQKEWTQPRWEGITRPYSAEDVVKLRGSVNPECTLAQLGAAKMWRLLHGESKKGYINSLGALTGGQALQQAKAGIEAVYLSGWQVAADANLAASMYPDQSLYPANSVPAVVERINNTFRRADQIQWSAGIEPGDPRYVDYFLPIVADAEAGFGGVLNAFELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARLAADVTGVPTLLVARTDADAADLITSDCDPYDSEFITGERTSEGFFRTHAGIEQAISRGLAYAPYADLVWCETSTPDLELARRFAQAIHAKYPGKLLAYNCSPSFNWQKNLDDKTIASFQQQLSDMGYKFQFITLAGIHSMWFNMFDLANAYAQGEGMKHYVEKVQQPEFAAAKDGYTFVSHQQEVGTGYFDKVTTIIQGGTSSVTALTGSTEESQF" ["CCO-CYTOSOL"] ["CCO-GLYOXYSOME", "CCO-CYTOSOL"] 1 [] {"MG+2": 1} 1 "ISOCITDEH-SUBUNIT" "isocitrate dehydrogenase" ["IcdE", "IcdA", "Icd"] "MESKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMDGAKLLKCSEFGDAIIENM" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "KCH-MONOMER" "K+ channel Kch" ["Kch"] "MSHWATFKQTATNLWVTLRHDILALAVFLNGLLIFKTIYGMSVNLLDIFHIKAFSELDLSLLANAPLFMLGVFLVLNSIGLLFRAKLAWAISIILLLIALIYTLHFYPWLKFSIGFCIFTLVFLLILRKDFSHSSAAAGTIFAFISFTTLLFYSTYGALYLSEGFNPRIESLMTAFYFSIETMSTVGYGDIVPVSESARLFTISVIISGITVFATSMTSIFGPLIRGGFNKLVKGNNHTMHRKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLNGEEINNDMLVSMLLNSGHGIFSDNDELETKADSKESAQK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "KDGALDOL-MONOMER" "α-dehydro-β-deoxy-D-glucarate aldolase" ["YhaF", "GarL"] "MNNDVFPNKFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAPVEADARRYLEWGATFVAVGSDLGVFRSATQKLADTFKK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 @@ -3450,8 +3450,8 @@ "LUMAZINESYN-MONOMER" "6,7-dimethyl-8-ribityllumazine synthase" ["YbaF", "RibH", "RibE"] "MNIIEANVATPDARVAITIARFNNFINDSLLEGAIDALKRIGQVKDENITVVWVPGAYELPLAAGALAKTGKYDAVIALGTVIRGGTAHFEYVAGGASNGLAHVAQDSEIPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "LYSDECARBOX-MONOMER" "lysine decarboxylase 1" ["LdcI", "CadA"] "MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDKYNLELCEEISKMNENLPLYAFANTYSTLDVSLNDLRLQISFFEYALGAAEDIANKIKQTTDEYINTILPPLTKALFKYVREGKYTFCTPGHMGGTAFQKSPVGSLFYDFFGPNTMKSDISISVSELGSLLDHSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKSIHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKRAFDLNLRVKNMLPSLYREDPEFYENMRIQELAQNIHKLIVHHNLPDLMYRAFEVLPTMVMTPYAAFQKELHGMTEEVYLDEMVGRINANMILPYPPGVPLVMPGEMITEESRPVLEFLQMLCEIGAHYPGFETDIHGAYRQADGRYTVKVLKEESKK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "LYSP-MONOMER" null ["CadR", "LysP", "lysine:proton symporter", "lysine transporter", "lysine specific permease"] "MVSETKTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAQPAGWSNWTIGEAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDINDLPYRSGFFPLGPIFAFILCLIITLGQNYEAFLKDTIDWGGVAATYIGIPLFLIIWFGYKLIKGTHFVRYSEMKFPQNDKK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 1 [] {} 0 -"LYSS-MONOMER" "lysine—tRNA ligase" ["HerC", "AsuD", "LysS", "LysRSs"] "MSEQHAQGADAVVDLNNELKTRREKLANLREQGIAFPNDFRRDHTSDQLHAEFDGKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDDLPEGVYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGLQDQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGAAARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAMRPVK" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MG+2": 2} 1 -"LYSU-MONOMER" "lysyl-tRNA synthetase" ["LysU"] "MSEQETRGANEAIDFNDELRNRREKLAALRQQGVAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRPQK" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MG+2": 2} 1 +"LYSS-MONOMER" "lysine—tRNA ligase" ["HerC", "AsuD", "LysS", "LysRSs"] "MSEQHAQGADAVVDLNNELKTRREKLANLREQGIAFPNDFRRDHTSDQLHAEFDGKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDDLPEGVYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGLQDQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGAAARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAMRPVK" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-EXTRACELLULAR", "CCO-CYTOSOL"] 1 [] {"MG+2": 2} 1 +"LYSU-MONOMER" "lysyl-tRNA synthetase" ["LysU"] "MSEQETRGANEAIDFNDELRNRREKLAALRQQGVAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRPQK" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-EXTRACELLULAR", "CCO-CYTOSOL"] 1 [] {"MG+2": 2} 1 "LYXK-MONOMER" "L-xylulose kinase" ["XylK", "Lyx", "YiaP", "SgbK", "LyxK"] "MTQYWLGLDCGGSWLKAGLYDREGREAGVQRLPLCALSPQPGWAERDMAELWQCCMAVIRALLTHSGVSGEQIVGIGISAQGKGLFLLDKNDKPLGNAILSSDRRAMEIVRRWQEDGIPEKLYPLTRQTLWTGHPVSLLRWLKEHEPERYAQIGCVMMTHDYLRWCLTGVKGCEESNISESNLYNMSLGEYDPCLTDWLGIAEINHALPPVVGSAEICGEITAQTAALTGLKAGTPVVGGLFDVVSTALCAGIEDEFTLNAVMGTWAVTSGITRGLRDGEAHPYVYGRYVNDGEFIVHEASPTSSGNLEWFTAQWGEISFDEINQAVASLPKAGGDLFFLPFLYGSNAGLEMTSGFYGMQAIHTRAHLLQAIYEGVVFSHMTHLNRMRERFTDVHTLRVTGGPAHSDVWMQMLADVSGLRIELPQVEETGCFGAALAARVGTGVYHNFSEAQRDLRHPVRTLLPDMTAHQLYQKKYQRYQHLIAALQGFHARIKEHTL" [] ["CCO-CYTOSOL"] 0 [] {} 1 "MACA" "ABC-type tripartite efflux pump membrane fusion protein" ["YbjY", "MacA", "macrolide efflux pump - membrane fusion protein"] "MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "MACB" "ABC-type tripartite efflux pump ATP binding/membrane subunit" ["YbjZ"] "MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNVTGGTEPVVNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 @@ -4102,7 +4102,7 @@ "RED-GLUTAREDOXIN" "reduced glutaredoxin 1" ["Grx", "GrxA", "glutaredoxin 1", "Grx1"] "MQTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYTDFAAWVKENLDA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "RED-THIOREDOXIN-MONOMER" "reduced thioredoxin 1" ["DasC", "TsnC", "FipA", "TrxA", "thioredoxin(SH)2", "TRX1"] "MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "RED-THIOREDOXIN2-MONOMER" "reduced thioredoxin 2" ["YfiG", "TrxC", "Trx2"] "MNTVCTHCQAINRIPDDRIEDAAKCGRCGHDLFDGEVINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"RELA-MONOMER" "GDP/GTP pyrophosphokinase" ["RelA", "stringent factor", "ppGpp synthetase I", "PSI", "ppGpp synthase I", "(p)ppGpp synthetase I"] "MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 +"RELA-MONOMER" "GDP/GTP pyrophosphokinase" ["RelA", "stringent factor", "ppGpp synthetase I", "PSI", "ppGpp synthase I", "(p)ppGpp synthetase I"] "MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "RFBX-MONOMER" "polyisoprenol-linked O16-antigen repeat unit flippase" ["Wzx", "WzxB", "RfbX"] "MNTNKLSLRRNVIYLAVVQGSNYLLPLLTFPYLVRTLGPENFGIFGFCQATMLYMIMFVEYGFNLTATQSIAKAADSKDKVTSIFWAVIFSKIVLIVITLIFLTSMTLLVPEYNKHAVIIWSFVPALVGNLIYPIWLFQGKEKMKWLTLSSILSRLAIIPLTFIFVNTKSDIAIAGFIQSSANLVAGIIALAIVVHEGWIGKVTLSLHNVRRSLADGFHVFISTSAISLYSTGIVIILGFISGPTSVGNFNAANTIRNALQGLLNPITQAIYPRISSTLVLNRVKGVILIKKSLTCLSLIGGAFSLILLLGASILVKISIGPGYDNAVIVLMIISPLPFLISLSNVYGIQVMLTHNYKKEFSKILIAAGLLSLLLIFPLTTLFKEIGAAITLLATECLVTSLMLMFVRNNKLLVC" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "RFFTRANS-MONOMER" "dTDP-4-dehydro-6-deoxy-D-glucose transaminase" ["Rff", "YifI", "RffA", "FcnA", "WecE"] "MIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRFGSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRPDTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLALWQNYYDALAPLAKAGRIELPSIPDGCVQNAHMFYIKLRDIDDRSALINFLKEAEIMAVFHYIPLHGCPAGEHFGEFHGEDRYTTKESERLLRLPLFYNLSPVNQRTVIATLLNYFS" [] ["CCO-CYTOSOL"] 0 [] {} 1 "RHAMNISOM-MONOMER" "L-rhamnose isomerase" ["RhaA"] "MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRRG" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1, "MN+2": 1} 1 @@ -4143,7 +4143,7 @@ "SARCOX-MONOMER" null ["SolA"] "MKYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKYVPLVLRAQTLWDELSRHNEEDPIFVRSGVINLGPADSTFLANVAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADGEYQAKKAIVCAGTWVKDLLPELPVQPVRKVFAWYQADGRYSVKNKFPAFTGELPNGDQYYGFPAENDALKIGKHNGGQVIHSADERVPFAEVASDGSEAFPFLRNVLPGIGCCLYGAACTYDNSPDEDFIIDTLPGHDNTLLITGLSGHGFKFASVLGEIAADFAQDKKSDFDLTPFRLSRFQ" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "SBMA-MONOMER" "peptide antibiotic/peptide nucleic acid transporter" ["SbmA"] "MFKSFFPKPGTFFLSAFVWALIAVIFWQAGGGDWVARITGASGQIPISAARFWSLDFLIFYAYYIVCVGLFALFWFIYSPHRWQYWSILGTALIIFVTWFLVEVGVAVNAWYAPFYDLIQTALSSPHKVTIEQFYREVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMANWQQLRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLIAFLPVLVTLSAHVPELPIIGHIPYGLVIAAIVWSLMGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDATRATPPTVRELFSAVRKNYFRLYFHYMYFNIARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGAFQYLINSWTTLVELMSIYKRLRSFEHELDGDKIQEVTHTLS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "SBP-MONOMER" "sulfate/thiosulfate ABC transporter periplasmic binding protein Sbp" [] "MNKWGVGLTFLLAATSVMAKDIQLLNVSYDPTRELYEQYNKAFSAHWKQQTGDNVVIRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKEWIKRLPDNSAPYTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAWGYALHHNNNDQAKAQDFVRALYKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLAANELGKDKFEIVTPSESILAEPTVSVVDKVVEKKGTKEVAEAYLKYLYSPEGQEIAAKNYYRPRDAEVAKKYENAFPKLKLFTIDEEFGGWTKAQKEHFANGGTFDQISKR" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 -"SDAC-MONOMER" null ["DcrA", "SdaC"] "METTQTSTIASKDSRSAWRKTDTMWMLGLYGTAIGAGVLFLPINAGVGGMIPLIIMAILAFPMTFFAHRGLTRFVLSGKNPGEDITEVVEEHFGIGAGKLITLLYFFAIYPILLVYSVAITNTVESFMSHQLGMTPPPRAILSLILIVGMMTIVRFGEQMIVKAMSILVFPFVGVLMLLALYLIPQWNGAALETLSLDTASATGNGLWMTLWLAIPVMVFSFNHSPIISSFAVAKREEYGDMAEQKCSKILAFAHIMMVLTVMFFVFSCVLSLTPADLAAAKEQNISILSYLANHFNAPVIAWMAPIIAIIAITKSFLGHYLGAREGFNGMVIKSLRGKGKSIEINKLNRITALFMLVTTWIVATLNPSILGMIETLGGPIIAMILFLMPMYAIQKVPAMRKYSGHISNVFVVVMGLIAISAIFYSLFS" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"SDAC-MONOMER" null ["DcrA", "SdaC", "L-serine transporter"] "METTQTSTIASKDSRSAWRKTDTMWMLGLYGTAIGAGVLFLPINAGVGGMIPLIIMAILAFPMTFFAHRGLTRFVLSGKNPGEDITEVVEEHFGIGAGKLITLLYFFAIYPILLVYSVAITNTVESFMSHQLGMTPPPRAILSLILIVGMMTIVRFGEQMIVKAMSILVFPFVGVLMLLALYLIPQWNGAALETLSLDTASATGNGLWMTLWLAIPVMVFSFNHSPIISSFAVAKREEYGDMAEQKCSKILAFAHIMMVLTVMFFVFSCVLSLTPADLAAAKEQNISILSYLANHFNAPVIAWMAPIIAIIAITKSFLGHYLGAREGFNGMVIKSLRGKGKSIEINKLNRITALFMLVTTWIVATLNPSILGMIETLGGPIIAMILFLMPMYAIQKVPAMRKYSGHISNVFVVVMGLIAISAIFYSLFS" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "SDH-FE-S" "succinate:quinone oxidoreductase, iron-sulfur cluster binding protein" ["DhsB", "SdhB"] "MRLEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {"CPD-6": 1, "CPD-7": 1, "3FE-4S": 1} 1 "SDH-FLAVO" "succinate:quinone oxidoreductase, FAD binding protein" ["DhsA", "SdhA"] "MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESMTRRSVNMEPKLRPAFPPKIRTY" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "SDH-MEMB1" "succinate:quinone oxidoreductase, membrane protein SdhC" ["DhsC", "CybA", "SdhC", "large subunit of cytochrome b556", "CybL"] "MIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLVW" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"PROTOHEME": 1} 1 @@ -4172,7 +4172,7 @@ "SPED-MONOMER" "S-adenosylmethionine decarboxylase proenzyme" ["SpeD"] "MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYNANRLTEILSETCSIIGANILNIARQDYEPQGASVTILVSEEPVDPKLIDKTEHPGPLPETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDIVTIDYRVRGFTRDINGMKHFIDHEINSIQNFMSDDMKALYDMVDVNVYQENIFHTKMLLKEFDLKHYMFHTKPEDLTDSERQEITAALWKEMREIYYGRNMPAV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "SPERMACTRAN-MONOMER" "spermidine N-acetyltransferase" ["SpeG"] "MPSAHSVKLRPLEREDLRYVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVECDGEKAGLVELVEINHVHRRAEFQIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFSVEGELMHEFFINGQYRNAIRMCIFQHQYLAEHKTPGQTLLKPTAQ" [] ["CCO-CYTOSOL"] 1 [] {"MG+2": 1} 1 "SPERMIDINESYN-MONOMER" "spermidine synthase" ["SpeE"] "MAEKKQWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDNDALRHLSTEIIQARFLASGLKCRYYNPAIHTAAFALPQYLQDALASQPS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 -"SPOT-MONOMER" "bifunctional (p)ppGpp synthase/hydrolase SpoT" ["SpoT"] "MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPGARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLNEIPQENIQRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQHGDASIPPATQSHGHLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDKETAQEFITEIKVEMFNHQGALANLTAAINTTTSNIQSLNTEEKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRNRN" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 +"SPOT-MONOMER" "bifunctional (p)ppGpp synthase/hydrolase SpoT" ["SpoT"] "MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPGARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLNEIPQENIQRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQHGDASIPPATQSHGHLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDKETAQEFITEIKVEMFNHQGALANLTAAINTTTSNIQSLNTEEKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRNRN" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "SUCCARGDIHYDRO-MONOMER" "N-succinylarginine dihydrolase" ["YdjT", "AstB"] "MNAWEVNFDGLVGLTHHYAGLSFGNEASTRHRFQVSNPRLAAKQGLLKMKALADAGFPQAVIPPHERPFIPVLRQLGFSGSDEQVLEKVARQAPHWLSSVSSASPMWVANAATIAPSADTLDGKVHLTVANLNNKFHRSLEAPVTESLLKAIFNDEEKFSVHSALPQVALLGDEGAANHNRLGGHYGEPGMQLFVYGREEGNDTRPSRYPARQTREASEAVARLNQVNPQQVIFAQQNPDVIDQGVFHNDVIAVSNRQVLFCHQQAFARQSQLLANLRARVNGFMAIEVPATQVSVSDTVSTYLFNSQLLSRDDGSMMLVLPQECREHAGVWGYLNELLAADNPISELKVFDLRESMANGGGPACLRLRVVLTEEERRAVNPAVMMNDTLFNALNDWVDRYYRDRLTAADLADPQLLREGREALDVLSQLLNLGSVYPFQREGGGNG" [] ["CCO-CYTOSOL"] 0 [] {} 1 "SUCCCOASYN-ALPHA" "succinyl-CoA synthetase subunit α" ["SucD", "α subunit"] "MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "SUCCCOASYN-BETA" "succinyl-CoA synthetase subunit β" ["SucC", "β subunit"] "MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEGK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 @@ -4182,7 +4182,7 @@ "SUCCSEMIALDDEHYDROG-MONOMER" "succinate-semialdehyde dehydrogenase (NADP+) GabD" ["GabD", "NADP+-dependent succinate-semialdehyde dehydrogenase"] "MKLNDSNLFRQQALINGEWLDANNGEAIDVTNPANGDKLGSVPKMGADETRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFAEEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQLMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAVSKLHIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYMCIGL" [] ["CCO-CYTOSOL"] 0 [] {} 1 "SUGE-MONOMER" "guanidinium exporter" ["SugE", "Gdx"] "MSWIILVIAGLLEVVWAVGLKYTHGFSRLTPSVITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESANPMRLASLALIVLGIIGLKLSTH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "SUPEROX-DISMUTFE-MONOMER" "superoxide dismutase (Fe)" ["SodB"] "MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA" ["CCO-MEMBRANE", "CCO-CYTOSOL"] [] 1 [] {"FE+2": 1} 1 -"SUPEROX-DISMUTMN-MONOMER" "superoxide dismutase (Mn)" ["SodA", "MnSOD"] "MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFAAKK" ["CCO-CYTOSOL"] [] 1 [] {"MN+2": 1} 1 +"SUPEROX-DISMUTMN-MONOMER" "superoxide dismutase (Mn)" ["SodA", "MnSOD"] "MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFAAKK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MN+2": 1} 1 "TAGAALDOL1-MONOMER" "tagatose-1,6-bisphosphate aldolase 1" ["Kba", "YraC", "AgaY", "KbaY"] "MSIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRISA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 "TAGAALDOL2-MONOMER" "tagatose-1,6-bisphosphate aldolase 2" ["YegF", "GatY"] "MYVVSTKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAANLHAPVIIAGTPGTFTHAGTENLLALVSAMAKQYHHPLAIHLDHHTKFDDIAQKVRSGVRSVMIDASHLPFAQNISRVKEVVDFCHRFDVSVEAELGQLGGQEDDVQVNEADALYTNPAQAREFAEATGIDSLAVAIGTAHGMYASAPALDFSRLENIRQWVNLPLVLHGASGLSTKDIQQTIKLGICKINVATELKNAFSQALKNYLTEHPEATDPRDYLQSAKSAMRDVVSKVIADCGCEGRA" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 "TAP-MONOMER" "methyl-accepting chemotaxis protein Tap" ["Tap", "Tap dimer", "MCP-IV", "dipeptide chemoreceptor protein", "chemotaxis signaling protein IV"] "MFNRIRISTTLFLILILCGILQIGSNGMSFWAFRDDLQRLNQVEQSNQQRAALAQTRAVMLQASTALNKAGTLTALSYPADDIKTLMTTARASLTQSTTLFKSFMAMTAGNEHVRGLQKETEKSFARWHNDLEHQATWLESNQLSDFLTAPVQGSQNAFDVNFEAWQLEINHVLEAASAQSQRNYQISALVFISMIIVAAIYISSALWWTRKMIVQPLAIIGSHFDSIAAGNLARPIAVYGRNEITAIFASLKTMQQALRGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQTAASMEQLTATVGQNADNARQASELAKNAATTAQAGGVQVSTMTHTMQEIATSSQKIGDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKGLIEESVNRVQQGSKLVNNAAATMIDIVSSVTRVNDIMGEIASASEEQQRGIEQVAQAVSQMDQVTQQNASLVEEAAVATEQLANQADHLSSRVAVFTLEEHEVARHESVQLQIAPVVS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 @@ -4251,7 +4251,7 @@ "UDK-MONOMER" "uridine/cytidine kinase" ["Udk"] "MTDQSHQCVIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDCYYKDQSHLSMEERVKTNYDHPSAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTRMKETVTVEPKKVIILEGILLLTDARLRDELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQYADIIVPRGGKNRIAIDILKAKISQFFE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "UDP-NACMUR-ALA-LIG-MONOMER" "UDP-N-acetylmuramate—L-alanine ligase" ["MurC"] "MNTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRGRGKIDPILVPDPARVAEMLAPVLTGNDLILVQGAGNIGKIARSLAEIKLKPQTPEEEQHD" [] ["CCO-CYTOSOL"] 0 [] {} 1 "UDP-NACMURALA-GLU-LIG-MONOMER" "UDP-N-acetylmuramoyl-L-alanine—D-glutamate ligase" ["MurD"] "MADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDECELYVLELSSFQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKELG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 -"UDP-NACMURALGLDAPAALIG-MONOMER" null ["Mra", "MurF"] "MISVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTASGVGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQENGTC" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 +"UDP-NACMURALGLDAPAALIG-MONOMER" "UDP-N-acetylmuramoyl-tripeptide—D-alanyl-D-alanine ligase" ["Mra", "MurF"] "MISVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTASGVGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQENGTC" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "UDP-NACMURALGLDAPLIG-MONOMER" null ["MurE"] "MADRNLRDLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLLGVIA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "UDPACYLGLCNACDEACETYL-MONOMER" null ["EnvA", "AsmB", "LpxC"] "MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIPIMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNHPAIDSSNQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVLAKQEAWEYVTFQDDAELPLAFKAPSAVLA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 "UDPGLCNACEPIM-MONOMER" "UDP-N-acetylglucosamine 2-epimerase" ["MnaA", "YifF", "RffE", "NfrC", "WecB"] "MKVLTVFGTRPEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQACSRILEALKNNRISL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -4273,7 +4273,7 @@ "UHPT-MONOMER" "hexose-6-phosphate:phosphate antiporter" ["UhpT", "UhpT-hexose phosphate MFS transporter"] "MLAFLNQVRKPTLDLPLEVRRKMWFKPFMQSYLVVFIGYLTMYLIRKNFNIAQNDMISTYGLSMTQLGMIGLGFSITYGVGKTLVSYYADGKNTKQFLPFMLILSAICMLGFSASMGSGSVSLFLMIAFYALSGFFQSTGGSCSYSTITKWTPRRKRGTFLGFWNISHNLGGAGAAGVALFGANYLFDGHVIGMFIFPSIIALIVGFIGLRYGSDSPESYGLGKAEELFGEEISEEDKETESTDMTKWQIFVEYVLKNKVIWLLCFANIFLYVVRIGIDQWSTVYAFQELKLSKAVAIQGFTLFEAGALVGTLLWGWLSDLANGRRGLVACIALALIIATLGVYQHASNEYIYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGAADGIKGTFAYLIGDSFAKLGLGMIADGTPVFGLTGWAGTFAALDIAAIGCICLMAIVAVMEERKIRREKKIQQLTVA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "UIDB-MONOMER" "glucuronide:H+ symporter" ["UidP", "GusB", "UidB", "glucuronide GPH transporter"] "MNQQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVLTDWSHGSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQPSLNISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQTPEVIMGIRTSIALVPCGFMLLAFVIIWFYPLTDKKFKEIVVEIDNRKKVQQQLISDITN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "UMPKI-MONOMER" "UMP kinase" ["Umk", "SmbA", "PyrH"] "MATNAKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADVVLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLITE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 -"UPPSYN-MONOMER" "ditrans,polycis-undecaprenyl-diphosphate synthase [(2E,6E)-farnesyl-diphosphate specific]" ["IspU", "Rth", "YaeS", "UppS"] "MMLSATQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFGGTEPGDETA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 +"UPPSYN-MONOMER" "ditrans,polycis-undecaprenyl-diphosphate synthase [(2E,6E)-farnesyl-diphosphate specific]" ["IspU", "Rth", "YaeS", "UppS"] "MMLSATQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFGGTEPGDETA" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "URAA-MONOMER" "uracil:H+ symporter UraA" ["UraA", "uracil NCS2 transporter"] "MTRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTLYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGMALATIVGIGLSLIFKLISVLRPEEVVLDAEDADITDK" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 "URACIL-PRIBOSYLTRANS-MONOMER" "uracil phosphoribosyltransferase" ["UraP", "Upp"] "MKIVEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWNGPVEIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSNIDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLVAAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "UROGENDECARBOX-MONOMER" "uroporphyrinogen decarboxylase" ["HemE"] "MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVEAVHRLSEQYHR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -4354,14 +4354,14 @@ "YEJE-MONOMER" "putative oligopeptide ABC transporter membrane subunit YejE" [] "MSRLSPVNQARWARFRHNRRGYWSLWIFLVLFGLSLCSELIANDKPLLVRYDGSWYFPLLKNYSESDFGGPLASQADYQDPWLKQRLENNGWVLWAPIRFGATSINFATNKPFPSPPSRQNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSITTLTSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLGITAFLSVAILLSLLIFIGEAVRDAFDPNKAV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "YEJF-MONOMER" "putative oligopeptide ABC transporter ATP binding subunit YejF" [] "MTQTLLAIENLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVEYLSGDIRFHGESLLHASDQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLSIVRKLAHRVAVMQNGRCVEQNYAATLFASPTHPYTQKLLNSEPSGDPVPLPEPASTLLDVEQLQVAFPIRKGILKRIVDHNVVVKNISFTLRAGETLGLVGESGSGKSTTGLALLRLINSQGSIIFDGQPLQNLNRRQLLPIRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMHEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILTLLKSLQQKHQLAYLFISHDLHVVRALCHQVIILRQGEVVEQGPCARVFATPQQEYTRQLLALS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "YFEP-MONOMER" "Mn2+ : H+ symporter" ["MntA", "MntH", "YfeP"] "MTNYRVESSSGRAARKMRLALMGPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGLLLFVAAAYIVELIFSQPNLAQLGKGMVIPSLPTSEAVFLAAGVLGATIMPHVIYLHSSLTQHLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAYLTLQPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVTMLPSFIVILMGLDPTRILVMSQVLLSFGIALALVPLLIFTSDSKLMGDLVNSKRVKQTGWVIVVLVVALNIWLLVGTALGL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"YGAY-MONOMER" "putative transporter YgaY, N-terminal fragment" ["YgaY", "YgaX", "YgaY_1"] "MTKPNHELSPALIVLMSIATGLAVASNYYAQPLLDTIARNFSLSASSAGFIVTAAQLGYAAGLLFLVPLGDMFERRRLIVSMTLLAAC*LPPAVSRWR**SSVRH*PVYSQSWHKFWFRWQRRWLHRINAAKWLALL*AVCCWGSCWHGQLPDCWRISAAGAPSFGLLRC*WH*WRWHYGVVCHK*NQKPTSTTHSCWVPFSVCLSAIKFCVPARCWAA*PLPISAFSGPQWPFCLPLHLLTTAMVSLVCLDLRELPERWALVRRAVLPIRANRTTPQLSVCCCYYFHGWRSGLVTLPYWR*LSESWCWISPCRACISLTRR*FIGYILMRAIA*PQVT*LATLLAVPPVR*FQPQPGNMAVGLAFVWLARRLPWLTYWSGGEVFIVRKPQ" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"YGAY-MONOMER" "putative transporter YgaY, N-terminal fragment" ["YgaY", "YgaX", "YgaY_1"] "MTKPNHELSPALIVLMSIATGLAVASNYYAQPLLDTIARNFSLSASSAGFIVTAAQLGYAAGLLFLVPLGDMFERRRLIVSMTLLAAC*LPPAVSRWR**SSVRH*PVYSQSWHKFWFRWQRRWLHRINAAKWLALL*AVCCWGSCWHGQLPDCWRISAAGAPSFGLLRC*WH*WRWHYGVVCHK*NQKPTSTTHSCWVPFSVCLSAIKFCVPARCWAA*PLPISAFSGPQWPFCLPLHLLTTAMVSLVCLDLRELPERWALVRRAVLPIRANRTTPQLSVCCCYYFHGWRSGLVTLPYWR*LSESWCWISPCRACISLTRR*FIGYILMRAIA*PQVT*LATLLAVPPVR*FQPQPGNMAVGLAFVWLARRLPWLTYWSGGEVFIVRKPQ" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YGFO-MONOMER" null ["XanQ", "YgfO", "xanthine NCS2 transporter"] "MSDINHAGSDLIFELEDRPPFHQALVGAITHLLAIFVPMVTPALIVGAALQLSAETTAYLVSMAMIASGIGTWLQVNRYGIVGSGLLSIQSVNFSFVTVMIALGSSMKSDGFHEELIMSSLLGVSFVGAFLVVGSSFILPYLRRVITPTVSGIVVLMIGLSLIKVGIIDFGGGFAAKSSGTFGNYEHLGVGLLVLIVVIGFNCCRSPLLRMGGIAIGLCVGYIASLCLGMVDFSSMRNLPLITIPHPFKYGFSFSFHQFLVVGTIYLLSVLEAVGDITATAMVSRRPIQGEEYQSRLKGGVLADGLVSVIASAVGSLPLTTFAQNNGVIQMTGVASRYVGRTIAVMLVILGLFPMIGGFFTTIPSAVLGGAMTLMFSMIAIAGIRIIITNGLKRRETLIVATSLGLGLGVSYDPEIFKILPASIYVLVENPICAGGLTAILLNIILPGGYRQENVLPGITSAEEMD" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YGFU-MONOMER" "urate:H+ symporter" ["UacT", "YgfU"] "MSAIDSQLPSSSGQDRPTDEVDRILSPGKLIILGLQHVLVMYAGAVAVPLMIGDRLGLSKEAIAMLISSDLFCCGIVTLLQCIGIGRFMGIRLPVIMSVTFAAVTPMIAIGMNPDIGLLGIFGATIAAGFITTLLAPLIGRLMPLFPPLVTGVVITSIGLSIIQVGIDWAAGGKGNPQYGNPVYLGISFAVLIFILLITRYAKGFMSNVAVLLGIVFGFLLSWMMNEVNLSGLHDASWFAIVTPMSFGMPIFDPVSILTMTAVLIIVFIESMGMFLALGEIVGRKLSSHDIIRGLRVDGVGTMIGGTFNSFPHTSFSQNVGLVSVTRVHSRWVCISSGIILILFGMVPKMAVLVASIPQFVLGGAGLVMFGMVLATGIRILSRCNYTTNRYNLYIVAISLGVGMTPTLSHDFFSKLPAVLQPLLHSGIMLATLSAVVLNVFFNGYQHHADLVKESVSDKDLKVRTVRMWLLMRKLKKNEHGE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YGGA-MONOMER" "L-arginine exporter" ["YggA", "ArgO"] "MFSYYFQGLALGAAMILPLGPQNAFVMNQGIRRQYHIMIALLCAISDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFKTAMSSNIELASAEVMKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQLDVEPKRWFALGTISASFLWFFGLALLAAWLAPRLRTAKAQRIINLVVGCVMWFIALQLARDGIAHAQALFS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YGIS-MONOMER" "putative deoxycholate binding periplasmic protein" ["YgiS"] "MYTRNLLWLVSLVSAAPLYAADVPANTPLAPQQVFRYNNHSDPGTLDPQKVEENTAAQIVLDLFEGLVWMDGEGQVQPAQAERWEILDGGKRYIFHLRSGLQWSDGQPLTAEDFVLGWQRAVDPKTASPFAGYLAQAHINNAAAIVAGKADVTSLGVKATDDRTLEVTLEQPVPWFTTMLAWPTLFPVPHHVIAKHGDSWSKPENMVYNGAFVLDQWVVNEKITARKNPKYRDAQHTVLQQVEYLALDNSVTGYNRYRAGEVDLTWVPAQQIPAIEKSLPGELRIIPRLNSEYYNFNLEKPPFNDVRVRRALYLTVDRQLIAQKVLGLRTPATTLTPPEVKGFSATTFDELQKPMSERVAMAKALLKQAGYDASHPLRFELFYNKYDLHEKTAIALSSEWKKWLGAQVTLRTMEWKTYLDARRAGDFMLSRQSWDATYNDASSFLNTLKSDSEENVGHWKNAQYDALLNQATQITDATKRNALYQQAEVIINQQAPLIPIYYQPLIKLLKPYVGGFPLHNPQDYVYSKELYIKAH" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 "YGJE-MONOMER" null ["YgjC", "YgjE", "TtdT", "TtdT tartrate/succinate DASS transporter"] "MKPSTEWWRYLAPLAVIAIIALLPVPAGLENHTWLYFAVFTGVIVGLILEPVPGAVVAMVGISIIAILSPWLLFSPEQLAQPGFKFTAKSLSWAVSGFSNSVIWLIFAAFMFGTGYEKTGLGRRIALILVKKMGHRTLFLGYAVMFSELILAPVTPSNSARGAGIIYPIIRNLPPLYQSQPNDSSSRSIGSYIMWMGIVADCVTSAIFLTAMAPNLLLIGLMKSASHATLSWGDWFLGMLPLSILLVLLVPWLAYVLYPPVLKSGDQVPRWAETELQAMGPLCSREKRMLGLMVGALVLWIFGGDYIDAAMVGYSVVALMLLLRIISWDDIVSNKAAWNVFFWLASLITLATGLNNTGFISWFGKLLAGSLSGYSPTMVMVALIVVFYLLRYFFASATAYTSALAPMMIAAALAMPEIPLPVFCLMVGAAIGLGSILTPYATGPSPIYYGSGYLPTADYWRLGAIFGLIFLVLLVITGLLWMPVVLL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YGJI-MONOMER" "putative transporter YgjI" ["YgjI"] "MSDTKRNTIGKFGLLSLTFAAVYSFNNVINNNIELGLASAPMFFLATIFYFIPFCLIIAEFVSLNKNSEAGVYAWVKSSLGGRWAFITAYTYWFVNLFFFTSLLPRVIAYASYAFLGYEYIMTPVATTIISMVLFAFSTWVSTNGAKMLGPITSVTSTLMLLLTLSYILLAGTALVGGVQPADAITVDAMIPNFNWAFLGVTTWIFMAAGGAESVAVYVNDVKGGSKSFVKVIILAGIFIGVLYSVSSVLINVFVSSKELKFTGGSVQVFHGMAAYFGLPEALMNRFVGLVSFTAMFGSLLMWTATPVKIFFSEIPEGIFGKKTVELNENGVPARAAWIQFLIVIPLMIIPMLGSNTVQDLMNTIINMTAAASMLPPLFIMLAYLNLRAKLDHLPRDFRMGSRRTGIIVVSMLIAIFAVGFVASTFPTGANILTIIFYNVGGIVIFLGFAWWKYSKYIKGLTAEERHIEATPASNVD" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"YGJU-MONOMER" null ["YgjU", "SstT"] "MTTQRSPGLFRRLAHGSLVKQILVGLVLGILLAWISKPAAEAVGLLGTLFVGALKAVAPILVLMLVMASIANHQHGQKTNIRPILFLYLLGTFSAALAAVVFSFAFPSTLHLSSSAGDISPPSGIVEVMRGLVMSMVSNPIDALLKGNYIGILVWAIGLGFALRHGNETTKNLVNDMSNAVTFMVKLVIRFAPIGIFGLVSSTLATTGFSTLWGYAQLLVVLVGCMLLVALVVNPLLVWWKIRRNPFPLVLLCLRESGVYAFFTRSSAANIPVNMALCEKLNLDRDTYSVSIPLGATINMAGAAITITVLTLAAVNTLGIPVDLPTALLLSVVASLCACGASGVAGGSLLLIPLACNMFGISNDIAMQVVAVGFIIGVLQDSCETALNSSTDVLFTAAACQAEDDRLANSALRN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 1 [] {} 0 +"YGJU-MONOMER" null ["YgjU", "SstT", "serine/threonine transporter"] "MTTQRSPGLFRRLAHGSLVKQILVGLVLGILLAWISKPAAEAVGLLGTLFVGALKAVAPILVLMLVMASIANHQHGQKTNIRPILFLYLLGTFSAALAAVVFSFAFPSTLHLSSSAGDISPPSGIVEVMRGLVMSMVSNPIDALLKGNYIGILVWAIGLGFALRHGNETTKNLVNDMSNAVTFMVKLVIRFAPIGIFGLVSSTLATTGFSTLWGYAQLLVVLVGCMLLVALVVNPLLVWWKIRRNPFPLVLLCLRESGVYAFFTRSSAANIPVNMALCEKLNLDRDTYSVSIPLGATINMAGAAITITVLTLAAVNTLGIPVDLPTALLLSVVASLCACGASGVAGGSLLLIPLACNMFGISNDIAMQVVAVGFIIGVLQDSCETALNSSTDVLFTAAACQAEDDRLANSALRN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 1 [] {} 0 "YHAO-MONOMER" "L-cysteine importer" ["CyuP", "DlsT", "YhaO"] "MEIASNKGVIADASTPAGRAGMSESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKISTGMVLTKLLVVAALGVSMVGMWHLYNVGSLPPLGLLVKNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGILFVTVFFYAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAAWVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKINENLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYKGMSLYLIIVTGLLLCVSPFLAFS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YHAU-MONOMER" "galactarate/D-glucarate transporter GarP" ["GarP", "YhaU"] "MILDTVDEKKKGVHTRYLILLIIFIVTAVNYADRATLSIAGTEVAKELQLSAVSMGYIFSAFGWAYLLMQIPGGWLLDKFGSKKVYTYSLFFWSLFTFLQGFVDMFPLAWAGISMFFMRFMLGFSEAPSFPANARIVAAWFPTKERGTASAIFNSAQYFSLALFSPLLGWLTFAWGWEHVFTVMGVIGFVLTALWIKLIHNPTDHPRMSAEELKFISENGAVVDMDHKKPGSAAASGPKLHYIKQLLSNRMMLGVFFGQYFINTITWFFLTWFPIYLVQEKGMSILKVGLVASIPALCGFAGGVLGGVFSDYLIKRGLSLTLARKLPIVLGMLLASTIILCNYTNNTTLVVMLMALAFFGKGFGALGWPVISDTAPKEIVGLCGGVFNVFGNVASIVTPLVIGYLVSELHSFNAALVFVGCSALMAMVCYLFVVGDIKRMELQK" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YHBG-MONOMER" "lipopolysaccharide transport system ATP binding protein LptB" ["YhbG"] "MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVYLGEDFRL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 1 [] {} 1 @@ -4391,7 +4391,7 @@ "YIDT-MONOMER" "D-galactonate:H+ symporter" ["YidT", "DgoT"] "MDIPVNAAKPGRRRYLTLVMIFITVVICYVDRANLAVASAHIQEEFGITKAEMGYVFSAFAWLYTLCQIPGGWFLDRVGSRVTYFIAIFGWSVATLFQGFATGLMSLIGLRAITGIFEAPAFPTNNRMVTSWFPEHERASAVGFYTSGQFVGLAFLTPLLIWIQEMLSWHWVFIVTGGIGIIWSLIWFKVYQPPRLTKGISKAELDYIRDGGGLVDGDAPVKKEARQPLTAKDWKLVFHRKLIGVYLGQFAVASTLWFFLTWFPNYLTQEKGITALKAGFMTTVPFLAAFVGVLLSGWVADLLVRKGFSLGFARKTPIICGLLISTCIMGANYTNDPMMIMCLMALAFFGNGFASITWSLVSSLAPMRLIGLTGGVFNFAGGLGGITVPLVVGYLAQGYGFAPALVYISAVALIGALSYILLVGDVKRVG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YIDY-MONOMER" "efflux pump MdtL" ["MdtL", "YidY", "YidY drug MFS transporter", "MdtL multidrug efflux pump"] "MSRFLICSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKVADRSGRKPVAIPGAALFIIASVFCSLAETSTLFLAGRFLQGLGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFWAMAMMGIAVLMLSLFILKETRPAAPAASDKPRENSESLLNRFFLSRVVITTLSVSVILTFVNTSPVLLMEIMGFERGEYATIMALTAGVSMTVSFSTPFALGIFKPRTLMITSQVLFLAAGITLAVSPSHAVSLFGITLICAGFSVGFGVAMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVVGIGAWNMLIGILIACSIVSLLLIMFVAPGRPVAAHEEIHHHA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YIEO-MONOMER" "putative transporter HsrA" ["YieO", "HsrA", "multidrug efflux pump HsrA"] "MSDKKKRSMAGLPWIAAMAFFMQALDATILNTALPAIAHSLNRSPLAMQSAIISYTLTVAMLIPVSGWLADRFGTRRIFTLAVSLFTLGSLACALSNSLPQLVVFRVIQGIGGAMMMPVARLALLRAYPRNELLPVLNFVAMPGLVGPILGPVLGGVLVTWATWHWIFLINIPIGIAGLLYARKHMPNFTTARRRFDITGFLLFGLSLVLFSSGIELFGEKIVASWIALTVIVTSIGLLLLYILHARRTPNPLISLDLFKTRTFSIGIVGNIATRLGTGCVPFLMPLMLQVGFGYQAFIAGCMMAPTALGSIIAKSMVTQVLRRLGYRHTLVGITVIIGLMIAQFSLQSPAMAIWMLILPLFILGMAMSTQFTAMNTITLADLTDDNASSGNSVLAVTQQLSISLGVAVSAAVLRVYEGMEGTTTVEQFHYTFITMGIITVASAAMFMLLKTTDGNNLIKRQRKSKPNRVPSESE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"YIFK-MONOMER" "threonine/serine:H+ symporter ThrP" ["ThrP", "YifK"] "MADNKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSIAILLIGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAAIASHPFRSILFPWANYVTMAFLICVLIGMYFNEDTRMSLFVGIIFMLAVTAIYKVFGLNRHGKAHKLEE" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"YIFK-MONOMER" "threonine/serine:H+ symporter ThrP" ["ThrP", "YifK", "threonine/serine transporter"] "MADNKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSIAILLIGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAAIASHPFRSILFPWANYVTMAFLICVLIGMYFNEDTRMSLFVGIIFMLAVTAIYKVFGLNRHGKAHKLEE" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YIHN-MONOMER" "putative transporter YihN" ["YihN"] "MLTKKKWALFSLLTLCGGTIYKLPSLKDAFYIPMQEYFHLTNGQIGNAMSVNSFVTTVGFFLSIYFADKLPRRYTMSFSLIATGLLGVYLTTMPGYWGILFVWALFGVTCDMMNWPVLLKSVSRLGNSEQQGRLFGFFETGRGIVDTVVAFSALAVFTWFGSGLLGFKAGIWFYSLIVIAVGIIIFFVLNDKEEAPSVEVKKEDGASKNTSMTSVLKDKTIWLIAFNVFFVYAVYCGLTFFIPFLKNIYLLPVALVGAYGIINQYCLKMIGGPIGGMISDKILKSPSKYLCYTFIISTAALVLLIMLPHESMPVYLGMACTLGFGAIVFTQRAVFFAPIGEAKIAENKTGAAMALGSFIGYAPAMFCFSLYGYILDLNPGIIGYKIVFGIMACFAFSGAVVSVMLVKRISQRKKEMLAAEA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YIHO-MONOMER" "putative sulfoquinovose transporter" ["SquO", "YihO"] "MSDHNPLTLKLNLREKIAYGMGDVGSNLMLCIGTLYLLKFYTDELGMPAYYGGIIFLVAKFFTAFTDMLTGFLLDSRKNIGPKGKFRPFILYAAVPAALIATLQFIATTFCLPVKTTIATALFMMFGLSYSLMNCSYGAMIPAITKNPNERAQLAAYRQGGATIGLLICTVAFIPLQSLFSDSTVGYACAALMFSIGGFIFMMLCYRGVKEHYVDTTPTGHKASILKSFCAIFRNPPLLVLCIANLCTLAAFNIKLAIQVYYTQYVLNDINLLSWMGFFSMGCILIGVLLVPLTVKCFGKKQVYLAGMVLWAVGDILNYFWGSNSFTFVMFSCVAFFGTAFVNSLNWALVPDTVDYGEWKTGIRAEGSVYTGYTFFRKISAALAGFLPGIMLTQIGYVPNIAQSDATLQGLRQLIFIWPCALAIIAALTMGFFYTLNEKRFALIIEEINQRKNKEMATEEKTASVTL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YIHP-MONOMER" "putative 2,3-dihydroxypropane-1-sulfonate export protein" ["YihP"] "MSHITTEDPATLRLPFKEKLSYGIGDLASNILLDIGTLYLLKFYTDVLGLPGTYGGIIFLISKFFTAFTDMGTGIMLDSRRKIGPKGKFRPFILYASFPVTLLAIANFVGTPFDVTGKTVMATILFMLYGLFFSMMNCSYGAMVPAITKNPNERASLAAWRQGGATLGLLLCTVGFVPVMNLIEGNQQLGYIFAATLFSLFGLLFMWICYSGVKERYVETQPANPAQKPGLLQSFRAIAGNRPLFILCIANLCTLGAFNVKLAIQVYYTQYVLNDPILLSYMGFFSMGCIFIGVFLMPASVRRFGKKKVYIGGLLIWVLGDLLNYFFGGGSVSFVAFSCLAFFGSAFVNSLNWALVSDTVEYGEWRTGVRSEGTVYTGFTFFRKVSQALAGFFPGWMLTQIGYVPNVAQADHTIEGLRQLIFIYPSALAVVTIVAMGCFYSLNEKMYVRIVEEIEARKRTA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 diff --git a/reconstruction/ecoli/flat/rnas.tsv b/reconstruction/ecoli/flat/rnas.tsv index fcf8ab463..ae0effde8 100644 --- a/reconstruction/ecoli/flat/rnas.tsv +++ b/reconstruction/ecoli/flat/rnas.tsv @@ -1,7 +1,7 @@ # Organism: Escherichia coli K-12 substr. MG1655 # Database: EcoCyc -# Version: 28.0 -# Date and time generated: October 30, 2023, 10:07:19 +# Version: 28.1 +# Date and time generated: March 7, 2024, 13:56:42 "id" "common_name" "synonyms" "type" "modified_forms" "gene_id" "monomer_ids" "anticodon" "coding_segments" "EG10001_RNA" "alr" ["alr", "alr5", "b4053", "ECK4045"] "mRNA" [] "EG10001" ["ALARACEBIOSYN-MONOMER"] null [] "EG10002_RNA" "modB" ["modB", "chlJ", "tslJ", "b0764", "ECK0753"] "mRNA" [] "EG10002" ["MODB-MONOMER"] null [] diff --git a/reconstruction/ecoli/flat/transcription_units.tsv b/reconstruction/ecoli/flat/transcription_units.tsv index 5ebc9deac..6d2fd55e1 100644 --- a/reconstruction/ecoli/flat/transcription_units.tsv +++ b/reconstruction/ecoli/flat/transcription_units.tsv @@ -1,14 +1,14 @@ # Organism: Escherichia coli K-12 substr. MG1655 # Database: EcoCyc -# Version: 28.0 -# Date and time generated: October 30, 2023, 10:07:21 +# Version: 28.1 +# Date and time generated: March 7, 2024, 13:56:51 "id" "common_name" "genes" "left_end_pos" "right_end_pos" "direction" "evidence" "TU-8381" "spy" ["G6939"] 1825057 1825688 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU-8382" "ycaC" ["EG11241"] 944931 945557 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU-8383" "yfeKS" ["G7261", "G7260"] 2537315 2538483 "+" ["EV-EXP-IEP-COREGULATION"] "TU-8384" "bepA-yfgD" ["G7312", "G7311"] 2616068 2617937 "+" ["EV-EXP-IEP-COREGULATION"] "TU-8385" "bamB-der" ["G7319", "G7320"] 2635884 2638975 "-" ["EV-EXP-IEP-COREGULATION"] -"TU-8387" "qseBC" ["EG12658", "G7575"] 3169287 3171833 "+" ["EV-EXP-IEP-COREGULATION"] +"TU-8387" "qseBC" ["EG12658", "G7575"] 3169749 3171833 "+" ["EV-EXP-IEP-COREGULATION"] "TU-8388" "recC" ["EG10825"] 2959060 2962507 "-" [] "TU-8389" "infA" ["EG10504"] 926162 926479 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU-8390" "infA" ["EG10504"] 926162 926685 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] @@ -19,12 +19,12 @@ "TU-8396" "dolP" ["G7644"] 3296072 3296984 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU-8397" "greA" ["EG10415"] 3328239 3328853 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU-8398" "lptB-rpoN-hpf-ptsN-yhbJ" ["EG12146", "EG11682", "EG11681", "EG10898", "EG11680"] 3343396 3347969 "+" ["EV-EXP-IEP-COREGULATION"] -"TU-8399" "yecR" ["G7035"] 1988145 1988545 "+" [] -"TU-8401" "yejO" ["EG12051"] 2286390 2290180 "-" [] +"TU-8399" "yecR" ["G7035"] 1988200 1988545 "+" [] +"TU-8401" "yejO" ["EG12051"] 2286390 2289176 "-" [] "TU-8405" "flhBAE" ["G7027", "G370", "G7028"] 1962580 1966216 "-" ["EV-EXP-IEP-COREGULATION"] "TU-8407" "rne" ["EG10859"] 1141182 1144728 "-" ["EV-COMP-AINF-SINGLE-DIRECTON", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU-8408" "fliE" ["EG11346"] 2012700 2013036 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] -"TU-8411" "fliFGHIJK" ["G379", "G378", "G377", "EG11656", "EG11654", "EG11347"] 2013091 2019513 "+" [] +"TU-8411" "fliFGHIJK" ["G379", "G378", "G377", "EG11656", "EG11654", "EG11347"] 2013146 2019513 "+" [] "TU-8412" "gltIJKL-sroC" ["G0-9383", "EG12663", "EG12662", "EG12661", "G6359"] 684530 687896 "-" [] "TU-8414" "malQ" ["EG10561"] 3547986 3550399 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU-8417" "yhjJ" ["EG12254"] 3680444 3682016 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] @@ -49,27 +49,27 @@ "TU0-1003" "astCADBE" ["G6940", "G6941", "G6942", "G6943", "G6944"] 1825955 1832044 "-" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-1004" "astCADBE" ["G6940", "G6941", "G6942", "G6943", "G6944"] 1825955 1832039 "-" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-1021" "pyrH" ["EG11539"] 191812 192580 "+" ["EV-COMP-AINF"] -"TU0-1022" "nrdHIEF" ["G7401", "G7402", "EG12381", "EG20257"] 2800595 2804461 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-1041" "cpxPQ" ["G0-16649", "G7816"] 4105733 4106387 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-1061" "srkA-dsbA" ["EG11297", "EG11831"] 4042342 4044044 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION"] +"TU0-1022" "nrdHIEF" ["G7401", "G7402", "EG12381", "EG20257"] 2800656 2804461 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-1041" "cpxPQ" ["G0-16649", "G7816"] 4105785 4106387 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-1061" "srkA-dsbA" ["EG11297", "EG11831"] 4042391 4044044 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION"] "TU0-1062" "dsbA" ["EG11297"] 4043377 4044044 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-1063" "fkpA" ["G7716"] 3476607 3477525 "-" ["EV-EXP-IEP"] "TU0-1064" "fkpA" ["G7716"] 3476607 3477499 "-" ["EV-COMP-AINF", "EV-EXP-IEP"] "TU0-1106" "aqpZ" ["EG13270"] 915352 916047 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-1122" "dmsABC" ["EG10234", "EG10233", "EG10232"] 940856 944896 "+" [] -"TU0-1123" "moaABCDE" ["EG11598", "EG11597", "EG11666", "EG11596", "EG11595"] 816856 819747 "+" [] -"TU0-1141" "ptsG" ["EG10787"] 1157621 1159302 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-1142" "ptsG" ["EG10787"] 1157591 1159302 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-1122" "dmsABC" ["EG10234", "EG10233", "EG10232"] 940878 944896 "+" [] +"TU0-1123" "moaABCDE" ["EG11598", "EG11597", "EG11666", "EG11596", "EG11595"] 816914 819747 "+" [] +"TU0-1141" "ptsG" ["EG10787"] 1157766 1159302 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-1142" "ptsG" ["EG10787"] 1157626 1159302 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-1143" "grcA" ["EG11784"] 2716066 2716523 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-1161" "ldcC" ["G6094"] 209649 211820 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-1181" "rrsA-ileT-alaT-rrlA-rrfA" ["EG30070", "EG30077", "EG30008", "EG30043", "EG30084"] 4035106 4040636 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-1182" "rrsB-gltT-rrlB-rrfB" ["EG30071", "EG30078", "EG30032", "EG30085"] 4166224 4171962 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-1183" "rrsC-gltU-rrlC-rrfC" ["EG30072", "EG30079", "EG30033", "EG30086"] 3941395 3947067 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-1161" "ldcC" ["G6094"] 209679 211820 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-1181" "rrsA-ileT-alaT-rrlA-rrfA" ["EG30070", "EG30077", "EG30008", "EG30043", "EG30084"] 4035239 4040636 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-1182" "rrsB-gltT-rrlB-rrfB" ["EG30071", "EG30078", "EG30032", "EG30085"] 4166367 4171962 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-1183" "rrsC-gltU-rrlC-rrfC" ["EG30072", "EG30079", "EG30033", "EG30086"] 3941516 3947067 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-1184" "rrsC-gltU-rrlC-rrfC" ["EG30072", "EG30079", "EG30033", "EG30086"] 3941633 3947067 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-1186" "rrsE-gltV-rrlE-rrfE" ["EG30074", "EG30081", "EG30034", "EG30088"] 4207693 4213209 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-1186" "rrsE-gltV-rrlE-rrfE" ["EG30074", "EG30081", "EG30034", "EG30088"] 4207863 4213209 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-1187" "rrsG-gltW-rrlG-rrfG" ["EG30075", "EG30082", "EG30035", "EG30089"] 2726069 2731448 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-1188" "rrsG-gltW-rrlG-rrfG" ["EG30075", "EG30082", "EG30035", "EG30089"] 2726069 2731332 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-1189" "rrsH-ileV-alaV-rrlH-rrfH" ["EG30076", "EG30083", "EG30010", "EG30045", "EG30090"] 223304 228875 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-1189" "rrsH-ileV-alaV-rrlH-rrfH" ["EG30076", "EG30083", "EG30010", "EG30045", "EG30090"] 223485 228875 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-1190" "rrsH-ileV-alaV-rrlH-rrfH" ["EG30076", "EG30083", "EG30010", "EG30045", "EG30090"] 223593 228875 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-1191" "rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF" ["EG30091", "EG30103", "EG30073", "EG30080", "EG30009", "EG30044", "EG30087"] 3423371 3429047 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-1192" "rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF" ["EG30091", "EG30103", "EG30073", "EG30080", "EG30009", "EG30044", "EG30087"] 3423371 3428940 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] @@ -78,7 +78,7 @@ "TU0-1195" "dnaN-recF" ["EG10828", "EG10242"] 3880148 3882562 "-" ["EV-EXP-IMP-POLAR-MUTATION"] "TU0-1196" "dnaN-recF" ["EG10828", "EG10242"] 3880148 3882348 "-" ["EV-EXP-IMP-POLAR-MUTATION"] "TU0-1198" "uspB" ["EG12231"] 3639385 3639848 "-" [] -"TU0-1201" "gdhA" ["EG10372"] 1842227 1843714 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-1201" "gdhA" ["EG10372"] 1842308 1843714 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-1222" "efp" ["EG12099"] 4375567 4376265 "+" ["EV-COMP-AINF"] "TU0-1241" "sugE" ["EG11616"] 4376794 4377192 "+" [] "TU0-1261" "chpSB" ["EG12096", "EG11250"] 4448428 4449042 "+" [] @@ -101,7 +101,7 @@ "TU0-12802" "yabPQ" ["EG12611", "EG12610"] 58474 59279 "+" ["EV-COMP-AINF"] "TU0-12804" "yabI" ["EG11571"] 71271 72115 "+" ["EV-COMP-AINF"] "TU0-12805" "sgrR-sroA-thiBPQ" ["EG12094", "G0-9381", "EG11574", "EG11573", "EG11572"] 72229 77338 "-" ["EV-COMP-AINF"] -"TU0-12806" "sgrST-setA" ["G0-10617", "EG11754", "G0-9941"] 77313 78799 "+" ["EV-COMP-AINF", "EV-COMP-AINF-SINGLE-DIRECTON", "EV-EXP-IEP-COREGULATION"] +"TU0-12806" "sgrST-setA" ["G0-10617", "EG11754", "G0-9941"] 77367 78799 "+" ["EV-COMP-AINF", "EV-COMP-AINF-SINGLE-DIRECTON", "EV-EXP-IEP-COREGULATION"] "TU0-12807" "leuO" ["EG10531"] 84188 85312 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-12808" "cra" ["EG10338"] 87947 89032 "+" ["EV-COMP-AINF"] "TU0-12809" "lpxC" ["EG10265"] 106508 107544 "+" ["EV-COMP-AINF"] @@ -113,7 +113,7 @@ "TU0-12815" "yadGH" ["EG12321", "EG12320"] 142779 144472 "+" ["EV-COMP-AINF"] "TU0-12816" "yadI" ["EG12322"] 144577 145017 "+" ["EV-COMP-AINF"] "TU0-12817" "yadE" ["EG11749"] 145081 146310 "+" ["EV-COMP-AINF"] -"TU0-12818" "yadC" ["EG11678"] 149715 150983 "-" ["EV-COMP-AINF"] +"TU0-12818" "yadC" ["EG11678"] 149715 150953 "-" ["EV-COMP-AINF"] "TU0-12819" "hrpB" ["EG12329"] 162105 164534 "+" ["EV-COMP-AINF"] "TU0-1282" "fldA-uof-fur" ["G0-10580", "EG10359", "EG10318"] 710118 711521 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-12820" "mrcB" ["EG10605"] 164721 167264 "+" ["EV-COMP-AINF"] @@ -122,7 +122,7 @@ "TU0-12823" "dgt" ["EG10225"] 179196 180754 "+" ["EV-COMP-AINF"] "TU0-12825" "yaeH" ["EG12336"] 183709 184095 "-" ["EV-COMP-AINF"] "TU0-12826" "yaeI" ["EG12337"] 184257 185069 "-" ["EV-COMP-AINF"] -"TU0-12827" "map-glnD-dapD" ["EG10570", "EG11411", "EG10207"] 185123 189506 "-" ["EV-COMP-AINF"] +"TU0-12827" "map-glnD-dapD" ["EG10570", "EG11411", "EG10207"] 185123 189519 "-" ["EV-COMP-AINF"] "TU0-1283" "fur" ["EG10359"] 710118 710723 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-12831" "dxr-uppS-cdsA" ["EG10139", "G6092", "EG12715"] 193521 196534 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-12832" "yaeR" ["G6095"] 211877 212266 "+" ["EV-COMP-AINF"] @@ -179,7 +179,7 @@ "TU0-12886" "rclR" ["G6175"] 320227 321081 "+" ["EV-COMP-AINF"] "TU0-12887" "ykgEFG" ["G6178", "G6177", "G6176"] 321608 324453 "+" ["EV-COMP-AINF"] "TU0-12888" "ykgH" ["G6180"] 324696 325364 "-" ["EV-COMP-AINF"] -"TU0-12889" "pdeL" ["EG11236"] 331879 333459 "+" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-12889" "pdeL" ["EG11236"] 332039 333459 "+" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-12890" "yahB" ["G6181"] 333501 334433 "-" ["EV-COMP-AINF"] "TU0-12891" "yahC" ["G6182"] 334525 335022 "-" ["EV-COMP-AINF"] "TU0-12892" "yahDEFG" ["G6186", "G6185", "G6184", "G6183"] 335280 339743 "+" ["EV-COMP-AINF"] @@ -191,7 +191,7 @@ "TU0-12900" "mhpT" ["G6206"] 375386 376670 "+" ["EV-COMP-AINF"] "TU0-12901" "yaiL" ["G6207"] 376772 377311 "+" ["EV-COMP-AINF"] "TU0-12902" "frmRAB" ["G6209", "EG50010", "G6208"] 377535 379881 "-" ["EV-COMP-AINF"] -"TU0-12903" "yaiO" ["G6210"] 380069 381260 "-" ["EV-COMP-AINF"] +"TU0-12903" "yaiO" ["G6210"] 380069 380842 "-" ["EV-COMP-AINF"] "TU0-12904" "insC1CD1D1" ["G6213", "G6212", "G0-10541"] 381351 382579 "+" ["EV-COMP-AINF"] "TU0-12905" "yaiX" ["G6214"] 380844 382872 "-" ["EV-COMP-AINF"] "TU0-12906" "yaiP" ["G6215"] 382739 383935 "-" ["EV-COMP-AINF"] @@ -230,7 +230,7 @@ "TU0-12946" "ybaN" ["EG12843"] 490882 491259 "+" ["EV-COMP-AINF"] "TU0-12947" "apt" ["EG10051"] 491310 491963 "+" ["EV-COMP-AINF"] "TU0-12948" "dnaX" ["EG10245"] 492056 494023 "+" ["EV-COMP-AINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-12951" "hemH" ["EG10431"] 497998 499017 "+" ["EV-COMP-AINF"] +"TU0-12951" "hemH" ["EG10431"] 498031 499017 "+" ["EV-COMP-AINF"] "TU0-12952" "ybaL" ["EG12623"] 501562 503295 "-" ["EV-COMP-AINF"] "TU0-12953" "fsr" ["G6256"] 503476 504696 "-" ["EV-COMP-AINF"] "TU0-12955" "cueR" ["G6263"] 513993 514400 "+" ["EV-COMP-AINF"] @@ -337,7 +337,7 @@ "TU0-13064" "pdeI-dgcI" ["G6434", "G6433"] 872979 876663 "+" ["EV-COMP-AINF", "EV-EXP-IEP-COREGULATION"] "TU0-13065" "bssR" ["G6436"] 878248 878631 "+" ["EV-COMP-AINF"] "TU0-13066" "yliI" ["G6437"] 878742 879857 "+" ["EV-COMP-AINF"] -"TU0-13067" "deoR" ["EG10223"] 881976 882764 "-" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-13067" "deoR" ["EG10223"] 881976 882734 "-" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-13069" "ybjJI" ["G6443", "G6442"] 885316 887339 "-" ["EV-COMP-AINF"] "TU0-13070" "rybB" ["G0-8880"] 887979 888057 "-" ["EV-COMP-AINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-13071" "ybjL" ["G6445"] 888134 889819 "-" ["EV-COMP-AINF"] @@ -369,7 +369,7 @@ "TU0-13099" "yccFS" ["G6496", "G6495"] 1021730 1024365 "-" ["EV-COMP-AINF"] "TU0-13100" "mgsA" ["G6497"] 1026557 1027041 "-" ["EV-COMP-AINF"] "TU0-13101" "yccT" ["G6498"] 1027111 1027837 "-" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-13102" "hspQ" ["G6500"] 1028404 1028751 "-" ["EV-COMP-AINF"] +"TU0-13102" "hspQ" ["G6500"] 1028404 1028721 "-" ["EV-COMP-AINF"] "TU0-13103" "rlmI" ["G6501"] 1028779 1029969 "-" ["EV-COMP-AINF"] "TU0-13104" "tusE" ["EG12876"] 1030339 1030668 "-" ["EV-COMP-AINF"] "TU0-13105" "yccA" ["EG11113"] 1030701 1031443 "-" ["EV-COMP-AINF"] @@ -380,9 +380,9 @@ "TU0-13110" "ymcE-gnsA" ["G0-9662", "G6512"] 1051847 1052240 "+" ["EV-COMP-AINF"] "TU0-13111" "yccM" ["G6513"] 1052289 1053362 "-" ["EV-COMP-AINF"] "TU0-13112" "torS" ["G6514"] 1053434 1056178 "-" ["EV-COMP-AINF"] -"TU0-13113" "yccE" ["EG12196"] 1064006 1065292 "+" ["EV-COMP-AINF"] +"TU0-13113" "yccE" ["EG12196"] 1064036 1065292 "+" ["EV-COMP-AINF"] "TU0-13114" "wrbA-yccJ" ["EG11540", "EG12703"] 1066864 1067758 "-" ["EV-COMP-AINF"] -"TU0-13115" "efeU" ["G6525"] 1081252 1082185 "+" ["EV-COMP-AINF"] +"TU0-13115" "efeU" ["G6525"] 1081307 1082185 "+" ["EV-COMP-AINF"] "TU0-13116" "efeOB" ["EG11735", "G6527"] 1082243 1084647 "+" ["EV-COMP-AINF"] "TU0-13117" "insE4F4EF4" ["G6534", "G6533", "G0-10531"] 1094275 1095437 "-" ["EV-COMP-AINF"] "TU0-13118" "ymdE-ycdU" ["G6536", "G6535"] 1095544 1096829 "+" ["EV-COMP-AINF"] @@ -490,7 +490,7 @@ "TU0-13233" "trkG" ["EG11020"] 1423782 1425239 "+" ["EV-COMP-AINF"] "TU0-13234" "ynaK-ydaY" ["G6689", "G6688"] 1425377 1425980 "+" ["EV-COMP-AINF"] "TU0-13235" "ynaA-lomR" ["G6692", "G6691"] 1426454 1428984 "+" ["EV-COMP-AINF"] -"TU0-13236" "stfR-tfaR" ["G6696", "G6695"] 1428796 1432986 "+" ["EV-COMP-AINF"] +"TU0-13236" "stfR-tfaR" ["G6696", "G6695"] 1429049 1432986 "+" ["EV-COMP-AINF"] "TU0-13237" "pinR" ["G6697"] 1433084 1433674 "-" ["EV-COMP-AINF"] "TU0-13238" "ynaE" ["G6698"] 1433991 1434224 "-" ["EV-COMP-AINF"] "TU0-13239" "uspF" ["G6699"] 1435185 1435641 "-" ["EV-COMP-AINF"] @@ -536,13 +536,13 @@ "TU0-13284" "yddG" ["EG12713"] 1546288 1547205 "-" ["EV-COMP-AINF"] "TU0-13285" "yddM" ["G6774"] 1552398 1552682 "-" ["EV-COMP-AINF"] "TU0-13286" "adhP" ["G6775"] 1552828 1553838 "-" ["EV-COMP-AINF"] -"TU0-13287" "maeA" ["EG10948"] 1553972 1555669 "-" ["EV-COMP-AINF"] +"TU0-13287" "maeA" ["EG10948"] 1553972 1555690 "-" ["EV-COMP-AINF"] "TU0-13288" "digH" ["G6785"] 1567504 1568823 "-" ["EV-COMP-AINF"] "TU0-13289" "pqqL" ["EG11744"] 1572407 1575202 "-" ["EV-COMP-AINF"] "TU0-13290" "yddAB" ["EG11742", "EG11743"] 1575247 1579342 "-" ["EV-COMP-AINF"] "TU0-13291" "ydeM" ["G6787"] 1579633 1580790 "-" ["EV-COMP-AINF"] "TU0-13292" "ydeN" ["G6788"] 1580842 1582524 "-" ["EV-COMP-AINF"] -"TU0-13293" "ydeQ" ["G6792"] 1586820 1587764 "-" ["EV-COMP-AINF"] +"TU0-13293" "ydeQ" ["G6792"] 1586820 1587734 "-" ["EV-COMP-AINF"] "TU0-13294" "ydeTSR" ["G6795", "G6794", "G6793"] 1587793 1590001 "-" ["EV-COMP-AINF"] "TU0-13295" "yneL" ["G6796"] 1590334 1590536 "-" ["EV-COMP-AINF"] "TU0-13297" "yneO" ["EG11780"] 1592665 1598086 "-" ["EV-COMP-AINF"] @@ -567,7 +567,7 @@ "TU0-13318" "ynfO-ydfO" ["G6822", "G0-10452"] 1636756 1637457 "+" ["EV-COMP-AINF"] "TU0-13319" "gnsB" ["G6823"] 1637609 1637846 "-" ["EV-COMP-AINF"] "TU0-13320" "ynfN" ["G6824"] 1637954 1638109 "-" ["EV-COMP-AINF"] -"TU0-13321" "essQ-ydfR-rrrQ-rzpQ" ["G6829", "G6828", "G6827", "G6826"] 1639030 1640585 "-" ["EV-COMP-AINF"] +"TU0-13321" "essQ-ydfR-rrrQ-rzpQ-rzoQ" ["G0-16675", "G6829", "G6828", "G6827", "G6826"] 1639030 1640585 "-" ["EV-COMP-AINF"] "TU0-13322" "ydfUT" ["G6831", "G6830"] 1642489 1644304 "-" ["EV-COMP-AINF"] "TU0-13323" "rem" ["EG11129"] 1644651 1644902 "-" ["EV-COMP-AINF"] "TU0-13324" "hokD" ["EG11130"] 1645119 1645274 "-" ["EV-COMP-AINF"] @@ -650,11 +650,11 @@ "TU0-13406" "yeaQ" ["G6981"] 1879007 1879255 "-" ["EV-COMP-AINF"] "TU0-13407" "yeaR-yoaG" ["G6983", "G6982"] 1879403 1879994 "-" ["EV-COMP-AINF"] "TU0-13409" "dmlR" ["G6985"] 1880886 1881809 "-" ["EV-COMP-AINF"] -"TU0-1341" "argP" ["EG10490"] 3059703 3060680 "+" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-1341" "argP" ["EG10490"] 3059730 3060680 "+" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-13410" "dmlA" ["G6986"] 1881912 1882997 "+" ["EV-COMP-AINF"] "TU0-13411" "yeaVW" ["G6988", "G6987"] 1883188 1885789 "+" ["EV-COMP-AINF"] "TU0-13412" "yeaX" ["G6989"] 1885845 1886810 "+" ["EV-COMP-AINF"] -"TU0-13413" "tsaB-yeaY" ["G6991", "G6990"] 1889951 1891297 "-" ["EV-COMP-AINF"] +"TU0-13413" "tsaB-yeaY" ["G6991", "G6990"] 1889951 1891267 "-" ["EV-COMP-AINF"] "TU0-13414" "yoaA" ["G6992"] 1891325 1893235 "-" ["EV-COMP-AINF"] "TU0-13415" "yoaB" ["G6993"] 1893367 1893711 "+" ["EV-COMP-AINF"] "TU0-13416" "yoaC" ["G6994"] 1893966 1894432 "+" ["EV-COMP-AINF"] @@ -673,7 +673,7 @@ "TU0-13429" "yebV" ["G7009"] 1921780 1922016 "+" ["EV-COMP-AINF"] "TU0-13430" "yebW" ["G7010"] 1922121 1922312 "+" ["EV-COMP-AINF"] "TU0-13431" "sdsR" ["G0-8883"] 1923104 1923207 "-" ["EV-COMP-AINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-13432" "yobA-yebZY" ["G7014", "G7013", "G7012"] 1923365 1924969 "-" ["EV-COMP-AINF"] +"TU0-13432" "yobA-yebZY" ["G7014", "G7013", "G7012"] 1923365 1924986 "-" ["EV-COMP-AINF"] "TU0-13433" "holE" ["EG11505"] 1925108 1925338 "+" ["EV-COMP-AINF"] "TU0-13434" "yobB-exoX" ["G7016", "G7015"] 1925440 1926782 "+" ["EV-COMP-AINF"] "TU0-13435" "ptrB" ["EG11004"] 1926779 1928865 "-" ["EV-COMP-AINF"] @@ -691,7 +691,7 @@ "TU0-13447" "yecJ" ["G0-10455"] 1987507 1987758 "-" ["EV-COMP-AINF"] "TU0-13449" "ftnA" ["EG10921"] 1988682 1989213 "+" ["EV-COMP-AINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-13450" "yecA" ["EG11139"] 1990954 1991619 "-" ["EV-COMP-AINF"] -"TU0-13451" "pgsA" ["EG10706"] 1992269 1992847 "-" ["EV-COMP-AINF"] +"TU0-13451" "pgsA" ["EG10706"] 1992269 1992817 "-" ["EV-COMP-AINF"] "TU0-13452" "sdiA" ["EG10935"] 1996110 1996832 "-" ["EV-COMP-AINF"] "TU0-13453" "dcyD-tcyLN" ["G7038", "G7037", "EG12347"] 1997062 1999508 "-" ["EV-COMP-AINF"] "TU0-13455" "yedEF" ["EG11661", "EG11660"] 2008277 2009712 "+" ["EV-COMP-AINF"] @@ -709,7 +709,7 @@ "TU0-13469" "msrPQ" ["G7060", "G7059"] 2039478 2041118 "+" ["EV-COMP-AINF"] "TU0-13470" "yodB" ["G7062"] 2042368 2042898 "+" ["EV-COMP-AINF"] "TU0-13471" "mtfA" ["G7063"] 2043651 2044448 "+" ["EV-COMP-AINF"] -"TU0-13472" "yeeJ" ["G7064"] 2044938 2052014 "+" ["EV-COMP-AINF"] +"TU0-13472" "yeeJ" ["G7064"] 2044995 2052014 "+" ["EV-COMP-AINF"] "TU0-13473" "yeeL" ["G7066"] 2052276 2053328 "-" ["EV-COMP-AINF"] "TU0-13476" "yeeN" ["G7068"] 2056858 2057574 "+" ["EV-COMP-AINF"] "TU0-13477" "yeeO" ["G7070"] 2058203 2059846 "-" ["EV-COMP-AINF"] @@ -741,7 +741,7 @@ "TU0-13506" "cyaR" ["G0-8878"] 2167114 2167200 "+" ["EV-COMP-AINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-13507" "insE5EF5F5" ["G7126", "G7125", "G0-10528"] 2170236 2171398 "+" ["EV-COMP-AINF"] "TU0-13509" "yegTUV" ["G7132", "G7131", "G7130"] 2178781 2182061 "+" ["EV-COMP-AINF"] -"TU0-13510" "yegW" ["G7133"] 2182035 2182811 "-" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-13510" "yegW" ["G7133"] 2182035 2182781 "-" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-13511" "yegX" ["G7134"] 2182833 2183651 "-" ["EV-COMP-AINF"] "TU0-13512" "thiMD" ["M007", "G7135"] 2183716 2185451 "-" ["EV-COMP-AINF"] "TU0-13513" "rcnR" ["G7137"] 2185524 2185903 "-" ["EV-COMP-AINF"] @@ -754,8 +754,8 @@ "TU0-13521" "yehHI" ["G8208", "EG11995"] 2197410 2203911 "+" ["EV-COMP-AINF", "EV-IC"] "TU0-13522" "yehK" ["G0-10458"] 2203972 2204289 "+" ["EV-COMP-AINF"] "TU0-13523" "yehLMPQ" ["EG12003", "EG12002", "EG11999", "EG11998"] 2204596 2210944 "+" ["EV-COMP-AINF"] -"TU0-13524" "yehR" ["EG12004"] 2211195 2211686 "+" ["EV-COMP-AINF"] -"TU0-13525" "yehS" ["EG12005"] 2211726 2212226 "-" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-13524" "yehR" ["EG12004"] 2211225 2211686 "+" ["EV-COMP-AINF"] +"TU0-13525" "yehS" ["EG12005"] 2211726 2212196 "-" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-13526" "btsSR" ["EG12007", "EG12006"] 2212243 2214644 "-" ["EV-COMP-AINF", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU0-13527" "mlrA" ["EG12008"] 2214840 2215597 "+" ["EV-COMP-AINF"] "TU0-13528" "yohO" ["G0-10459"] 2215657 2215764 "+" ["EV-COMP-AINF"] @@ -811,11 +811,11 @@ "TU0-13582" "yfbU-hxpA" ["G7188", "G7187"] 2411439 2412594 "-" ["EV-COMP-AINF"] "TU0-13583" "yfbV" ["G7189"] 2412677 2413132 "-" ["EV-COMP-AINF"] "TU0-13584" "yfcC" ["G7190"] 2417081 2418601 "+" ["EV-COMP-AINF"] -"TU0-13585" "yfcD" ["G7191"] 2418634 2419206 "-" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-13586" "yfcE" ["G7192"] 2419234 2419818 "-" ["EV-COMP-AINF"] +"TU0-13585" "yfcD" ["G7191"] 2418634 2419176 "-" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-13586" "yfcE" ["G7192"] 2419234 2419788 "-" ["EV-COMP-AINF"] "TU0-13587" "yfcF" ["G7193"] 2419841 2420485 "-" ["EV-COMP-AINF"] "TU0-13588" "yfcG" ["G7194"] 2420621 2421268 "+" ["EV-COMP-AINF"] -"TU0-13589" "folX-yfcH" ["G7196", "G7195"] 2421295 2422601 "+" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-13589" "folX-yfcH" ["G7196", "G7195"] 2421301 2422601 "+" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-13590" "rpnB" ["G7197"] 2422649 2423539 "-" ["EV-COMP-AINF"] "TU0-13591" "folC-dedD" ["EG10327", "EG10218"] 2430850 2432942 "-" ["EV-COMP-AINF"] "TU0-13592" "yfcJ" ["G7198"] 2438942 2440120 "-" ["EV-COMP-AINF"] @@ -865,17 +865,17 @@ "TU0-13639" "nudK" ["EG12410"] 2582903 2583478 "-" ["EV-COMP-AINF"] "TU0-13640" "aegA" ["EG12409"] 2583546 2585525 "-" ["EV-COMP-AINF"] "TU0-13641" "narQ" ["EG11460"] 2585577 2587431 "+" ["EV-COMP-AINF"] -"TU0-13642" "yffB-dapE-ypfN" ["G0-10463", "EG10208", "EG11147"] 2591217 2592962 "+" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-13642" "yffB-dapE-ypfN" ["G0-10463", "EG10208", "EG11147"] 2591247 2592962 "+" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-13643" "ypfH" ["G7296"] 2593072 2593770 "-" ["EV-COMP-AINF"] "TU0-13644" "ypfJ-tmcA" ["G7298", "G7297"] 2593844 2596737 "-" ["EV-COMP-AINF"] -"TU0-13646" "hda" ["G7313"] 2618075 2618806 "-" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-13646" "hda" ["G7313"] 2618075 2618776 "-" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-13647" "yfgG" ["G7315"] 2629252 2629481 "+" ["EV-COMP-AINF"] "TU0-13648" "yfgHI" ["G7317", "G7316"] 2629792 2630865 "+" ["EV-COMP-AINF"] "TU0-13649" "yfgJ" ["G7318"] 2635599 2635814 "-" ["EV-COMP-AINF"] "TU0-13650" "rlmN" ["EG12401"] 2643129 2644283 "-" ["EV-COMP-AINF"] "TU0-13651" "ndk" ["EG10650"] 2644433 2644864 "-" ["EV-COMP-AINF"] "TU0-13652" "yfhM-pbpC" ["G7323", "G7322"] 2645013 2652324 "-" ["EV-COMP-AINF"] -"TU0-13654" "ryfA" ["G0-8879"] 2653855 2654158 "+" ["EV-COMP-AINF"] +"TU0-13654" "ryfA-timP" ["G0-17087", "G0-8879"] 2653855 2654158 "+" ["EV-COMP-AINF"] "TU0-13655" "sseB" ["EG11601"] 2654157 2654933 "-" ["EV-COMP-AINF"] "TU0-13656" "pepB" ["EG12310"] 2655075 2656358 "-" ["EV-COMP-AINF"] "TU0-13657" "trmJ" ["G7327"] 2662583 2663323 "-" ["EV-COMP-AINF"] @@ -889,12 +889,12 @@ "TU0-13666" "glmY" ["G0-8910"] 2691157 2691340 "-" ["EV-COMP-AINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-13667" "pgpC-tadA" ["EG11371", "EG11372"] 2697354 2698638 "-" ["EV-COMP-AINF"] "TU0-13668" "yfhH" ["EG12308"] 2698759 2699607 "+" ["EV-COMP-AINF"] -"TU0-13669" "yfhL" ["G7346"] 2699633 2699923 "+" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-13669" "yfhL" ["G7346"] 2699663 2699923 "+" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-13671" "tapT-patZ" ["G7350", "G7349"] 2719223 2722613 "+" ["EV-COMP-AINF"] -"TU0-13672" "pssA" ["EG10781"] 2722668 2724082 "+" ["EV-COMP-AINF"] +"TU0-13672" "pssLA" ["G0-17028", "EG10781"] 2722668 2724082 "+" ["EV-COMP-AINF"] "TU0-13673" "yfiM" ["EG12857"] 2724128 2724451 "+" ["EV-COMP-AINF"] -"TU0-13674" "kgtP" ["EG10522"] 2724448 2725746 "-" ["EV-COMP-AINF"] -"TU0-13675" "rluD-pgeF" ["EG12098", "EG12097"] 2734303 2736011 "-" ["EV-COMP-AINF"] +"TU0-13674" "kgtP" ["EG10522"] 2724448 2725758 "-" ["EV-COMP-AINF"] +"TU0-13675" "rluD-pgeF" ["EG12098", "EG12097"] 2734303 2736026 "-" ["EV-COMP-AINF"] "TU0-13677" "raiAZ" ["G0-17078", "EG11151"] 2737104 2737552 "+" ["EV-COMP-AINF"] "TU0-13678" "yfiL" ["EG12446"] 2741360 2741725 "+" ["EV-COMP-AINF"] "TU0-13679" "yfiR-dgcN-yfiB" ["EG11152", "EG12880", "G7354"] 2741824 2744169 "+" ["EV-COMP-AINF"] @@ -913,7 +913,7 @@ "TU0-13694" "yfjPQ" ["G7368", "G7367"] 2767710 2769486 "+" ["EV-COMP-AINF"] "TU0-13695" "yfjR-ypjK-yfjS-yfjT" ["G7372", "G7371", "G7370", "G7369"] 2769703 2771615 "+" ["EV-COMP-AINF"] "TU0-13696" "yfjU" ["G7373"] 2771840 2772154 "-" ["EV-COMP-AINF"] -"TU0-13697" "yfjV" ["G7376"] 2772167 2773212 "-" ["EV-COMP-AINF"] +"TU0-13697" "yfjV" ["G7376"] 2772167 2773182 "-" ["EV-COMP-AINF"] "TU0-13698" "yfjW" ["G7377"] 2773318 2775021 "+" ["EV-COMP-AINF"] "TU0-13699" "yfjXY-ypjJ-yfjZ-ypjF" ["G7381", "G7380", "G0-10464", "G7379", "G7378"] 2775919 2777782 "+" ["EV-COMP-AINF"] "TU0-13700" "ypjA" ["G7382"] 2778146 2782726 "-" ["EV-COMP-AINF"] @@ -939,7 +939,7 @@ "TU0-13723" "ygbN" ["G7421"] 2865101 2866465 "+" ["EV-COMP-AINF"] "TU0-13724" "ygbE" ["EG12707"] 2873014 2873337 "-" ["EV-COMP-AINF"] "TU0-13725" "casABCDE12" ["G7430", "G7429", "G7428", "G7427", "G7426", "G7425", "EG12845"] 2878569 2884319 "-" ["EV-COMP-AINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-13726" "cas3" ["EG12634"] 2884553 2887249 "-" ["EV-COMP-AINF"] +"TU0-13726" "cas3" ["EG12634"] 2884553 2887219 "-" ["EV-COMP-AINF"] "TU0-13727" "queD" ["G7431"] 2892214 2892579 "+" ["EV-COMP-AINF"] "TU0-13728" "ygcNOP" ["G7434", "G7433", "G7432"] 2892657 2894771 "+" ["EV-COMP-AINF"] "TU0-13729" "ygcRQ" ["G7436", "G7435"] 2894919 2896555 "-" ["EV-COMP-AINF"] @@ -1047,7 +1047,7 @@ "TU0-13839" "sroG-ribB" ["G0-9387", "EG10465"] 3183813 3184718 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-13841" "ubiK" ["G7582"] 3184840 3185130 "+" ["EV-COMP-AINF"] "TU0-13842" "ygiL" ["EG12363"] 3185414 3185965 "+" ["EV-COMP-AINF"] -"TU0-13843" "insC5CD5D5-yqiHIG" ["G7587", "G7586", "G7585", "G7584", "G7583", "G0-10545"] 3186025 3191696 "+" ["EV-COMP-AINF", "EV-EXP-IEP-COREGULATION"] +"TU0-13843" "insC5CD5D5-yqiHIG" ["G7587", "G7586", "G7585", "G7584", "G7583", "G0-10545"] 3186040 3191696 "+" ["EV-COMP-AINF", "EV-EXP-IEP-COREGULATION"] "TU0-13844" "yqiJK" ["G7589", "G7588"] 3192208 3194525 "+" ["EV-COMP-AINF"] "TU0-13845" "sibD" ["G0-8913"] 3194721 3194865 "-" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-13846" "hldE" ["G7590"] 3195320 3196753 "-" ["EV-COMP-AINF"] @@ -1062,10 +1062,10 @@ "TU0-13856" "ygjP" ["G7604"] 3235960 3236463 "+" ["EV-COMP-AINF"] "TU0-13857" "ygjQ" ["G7605"] 3236540 3237232 "+" ["EV-COMP-AINF"] "TU0-13858" "ygjR" ["G7606"] 3237282 3238297 "+" ["EV-COMP-AINF"] -"TU0-13859" "alx" ["G7607"] 3238580 3239545 "+" ["EV-COMP-AINF", "EV-EXP-IEP-COREGULATION"] +"TU0-13859" "alx" ["G7607"] 3238375 3239545 "+" ["EV-COMP-AINF", "EV-EXP-IEP-COREGULATION"] "TU0-13860" "sstT" ["EG12732"] 3239863 3241188 "+" ["EV-COMP-AINF"] "TU0-13861" "ygjV" ["G7608"] 3241193 3241744 "-" ["EV-COMP-AINF"] -"TU0-13863" "yqjCDEK" ["G7614", "G7613", "G7612", "G7611"] 3248969 3250376 "+" ["EV-COMP-AINF"] +"TU0-13863" "yqjCDEK" ["G7614", "G7613", "G7612", "G7611"] 3248887 3250376 "+" ["EV-COMP-AINF"] "TU0-13864" "yqjF" ["G7615"] 3250562 3250954 "+" ["EV-COMP-AINF"] "TU0-13865" "yqjG" ["G7616"] 3251024 3252010 "+" ["EV-COMP-AINF"] "TU0-13866" "yhaH" ["G7617"] 3252304 3252669 "+" ["EV-COMP-AINF"] @@ -1094,7 +1094,7 @@ "TU0-13890" "elbB-mtgA" ["EG11383", "G7668"] 3349081 3350459 "-" ["EV-COMP-AINF"] "TU0-13891" "yhcC" ["G7669"] 3353121 3354050 "-" ["EV-COMP-AINF"] "TU0-13892" "yhcADE" ["G7671", "G7670", "EG11515"] 3362112 3366929 "+" ["EV-COMP-AINF"] -"TU0-13893" "yhcF" ["G7673"] 3366755 3367642 "+" ["EV-COMP-AINF"] +"TU0-13893" "yhcF" ["G7673"] 3366926 3367642 "+" ["EV-COMP-AINF"] "TU0-13894" "yhcG" ["G7674"] 3367827 3368954 "+" ["EV-COMP-AINF"] "TU0-13895" "nanR" ["G7678"] 3373698 3374489 "-" ["EV-COMP-AINF"] "TU0-13896" "zapE" ["G7680"] 3378870 3379997 "-" ["EV-COMP-AINF"] @@ -1109,7 +1109,7 @@ "TU0-13905" "yhdJ" ["EG11498"] 3411653 3412537 "+" ["EV-COMP-AINF"] "TU0-13906" "yhdU" ["G7694"] 3412621 3412800 "+" ["EV-COMP-AINF"] "TU0-13907" "yhdV" ["G7695"] 3418390 3418611 "+" ["EV-COMP-AINF"] -"TU0-13908" "trkA" ["EG11019"] 3436488 3437894 "+" ["EV-COMP-AINF"] +"TU0-13908" "trkA" ["EG11019"] 3436518 3437894 "+" ["EV-COMP-AINF"] "TU0-13909" "mscL" ["EG11180"] 3438001 3438434 "+" ["EV-COMP-AINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-13910" "arfA" ["G0-10465"] 3438431 3438673 "-" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-13911" "yhdN-zntR" ["EG11970", "EG11969"] 3438705 3439546 "-" ["EV-COMP-AINF", "EV-EXP-IEP-COREGULATION"] @@ -1127,20 +1127,20 @@ "TU0-13926" "hofQ" ["EG12113"] 3519465 3520703 "-" ["EV-COMP-AINF"] "TU0-13927" "hofMNOP" ["G7739", "G7738", "G7737", "G7736"] 3520615 3522928 "-" ["EV-COMP-AINF"] "TU0-13928" "igaA" ["G7741"] 3526469 3528604 "+" ["EV-COMP-AINF"] -"TU0-13929" "yrfG-hslR" ["G7743", "G7742"] 3528639 3529749 "+" ["EV-COMP-AINF"] +"TU0-13929" "yrfG-hslR" ["G7743", "G7742"] 3528669 3529749 "+" ["EV-COMP-AINF"] "TU0-13930" "hslO" ["G7744"] 3529774 3530652 "+" ["EV-COMP-AINF"] "TU0-13931" "greB" ["EG11578"] 3536812 3537288 "+" ["EV-COMP-AINF"] "TU0-13932" "yhgF" ["G7746"] 3537385 3539706 "+" ["EV-COMP-AINF"] "TU0-13933" "rpnA" ["EG11750"] 3543167 3544045 "+" ["EV-COMP-AINF"] "TU0-13934" "yzgL" ["G7752"] 3563724 3564005 "-" ["EV-COMP-AINF"] -"TU0-13935" "asd" ["EG10088"] 3573775 3574878 "-" ["EV-COMP-AINF"] +"TU0-13935" "asd" ["EG10088"] 3573775 3574910 "-" ["EV-COMP-AINF"] "TU0-13936" "yhhW" ["G7756"] 3578950 3579645 "-" ["EV-COMP-AINF"] "TU0-13937" "yhhX" ["G7757"] 3579768 3580805 "-" ["EV-COMP-AINF"] "TU0-13940" "yhhZ-yrhA-insA6AB6B6" ["G7762", "G7761", "G0-10540", "G7760", "G7759"] 3581863 3584309 "+" ["EV-COMP-AINF"] "TU0-13941" "yrhB" ["G7763"] 3584759 3585043 "+" ["EV-COMP-AINF"] "TU0-13942" "rsmD-yhhL" ["EG12212", "EG10343"] 3604393 3605248 "+" ["EV-COMP-AINF"] "TU0-13943" "yhhN" ["EG12214"] 3605751 3606377 "+" ["EV-COMP-AINF"] -"TU0-13944" "yhhQ" ["EG12217"] 3609217 3609882 "+" ["EV-COMP-AINF"] +"TU0-13944" "yhhQ" ["EG12217"] 3609175 3609882 "+" ["EV-COMP-AINF"] "TU0-13945" "dcrB" ["G7767"] 3609955 3610512 "+" ["EV-COMP-AINF"] "TU0-13946" "yhhT" ["EG12220"] 3611865 3612914 "+" ["EV-COMP-AINF"] "TU0-13947" "acpT" ["EG12221"] 3612969 3613556 "+" ["EV-COMP-AINF"] @@ -1150,7 +1150,7 @@ "TU0-13951" "yhhI" ["EG11525"] 3624378 3625514 "+" ["EV-COMP-AINF"] "TU0-13952" "yhiI-rbbA-yhhJ" ["EG12224", "EG12223", "EG11767"] 3625679 3630602 "-" ["EV-COMP-AINF"] "TU0-13953" "yhiJ" ["EG12225"] 3630968 3632590 "-" ["EV-COMP-AINF"] -"TU0-13955" "yhiL" ["EG12227"] 3632852 3634488 "-" ["EV-COMP-AINF"] +"TU0-13955" "yhiL" ["EG12227"] 3632852 3634458 "-" ["EV-COMP-AINF"] "TU0-13956" "dtpB" ["EG12232"] 3640862 3642331 "+" ["EV-COMP-AINF"] "TU0-13957" "prlC-yhiQ" ["EG11441", "EG12233"] 3642380 3645238 "-" ["EV-COMP-AINF", "EV-EXP-IEP-COREGULATION"] "TU0-13958" "rlmJ" ["EG12234"] 3645350 3646227 "+" ["EV-COMP-AINF"] @@ -1172,7 +1172,7 @@ "TU0-13979" "yiaD" ["EG12271"] 3716547 3717206 "+" ["EV-COMP-AINF"] "TU0-13980" "ghrB" ["EG12272"] 3717310 3718284 "+" ["EV-COMP-AINF"] "TU0-13981" "ysaB" ["G0-10467"] 3725413 3725712 "-" ["EV-COMP-AINF"] -"TU0-13982" "yiaA" ["EG11186"] 3726924 3727391 "-" ["EV-COMP-AINF"] +"TU0-13982" "yiaA" ["EG11186"] 3726924 3727361 "-" ["EV-COMP-AINF"] "TU0-13983" "yiaB" ["EG11267"] 3727407 3727748 "-" ["EV-COMP-AINF"] "TU0-13984" "avtA" ["EG10107"] 3739674 3740958 "+" ["EV-COMP-AINF"] "TU0-13985" "ysaA" ["EG12277"] 3741109 3741582 "-" ["EV-COMP-AINF"] @@ -1303,10 +1303,10 @@ "TU0-14123" "ghxP" ["EG11939"] 4278321 4279828 "+" ["EV-COMP-AINF"] "TU0-14124" "yjcE" ["EG11940"] 4279980 4281629 "+" ["EV-COMP-AINF"] "TU0-14125" "yjcF" ["EG11941"] 4281783 4283075 "-" ["EV-COMP-AINF"] -"TU0-14126" "gltP" ["EG10405"] 4294481 4295794 "+" ["EV-COMP-AINF"] +"TU0-14126" "gltP" ["EG10405"] 4294389 4295794 "+" ["EV-COMP-AINF"] "TU0-14127" "yjcO" ["EG11951"] 4296436 4297125 "-" ["EV-COMP-AINF"] "TU0-14128" "mdtNOP" ["EG11954", "EG11953", "EG11952"] 4299564 4304109 "-" ["EV-COMP-AINF"] -"TU0-14129" "yjcS" ["EG11955"] 4304612 4306627 "-" ["EV-COMP-AINF"] +"TU0-14129" "yjcS" ["EG11955"] 4304612 4306597 "-" ["EV-COMP-AINF"] "TU0-14130" "yjdP" ["G0-9541"] 4313868 4314197 "+" ["EV-COMP-AINF"] "TU0-14131" "yjdN" ["EG10712"] 4325298 4325741 "-" ["EV-COMP-AINF"] "TU0-14132" "yjdM" ["EG10711"] 4326399 4326734 "-" ["EV-COMP-AINF"] @@ -1327,7 +1327,7 @@ "TU0-14151" "orn" ["G7842"] 4391604 4392149 "+" ["EV-COMP-AINF"] "TU0-14152" "yjeT" ["G7844"] 4404386 4404583 "+" ["EV-COMP-AINF"] "TU0-14153" "yjfIJ" ["G7847", "G7846"] 4410133 4411251 "+" ["EV-COMP-AINF"] -"TU0-14154" "yjfKLMC" ["EG11812", "G7850", "G7849", "G7848"] 4411272 4414191 "+" ["EV-COMP-AINF"] +"TU0-14154" "yjfKLMC" ["EG11812", "G7850", "G7849", "G7848"] 4411302 4414191 "+" ["EV-COMP-AINF"] "TU0-14155" "yjfN" ["G7851"] 4416017 4416292 "-" ["EV-COMP-AINF"] "TU0-14156" "bsmA" ["G7852"] 4416441 4416869 "-" ["EV-COMP-AINF"] "TU0-14157" "ulaR" ["G7854"] 4417698 4418453 "-" ["EV-COMP-AINF"] @@ -1356,9 +1356,9 @@ "TU0-14182" "yjgX" ["G7898"] 4499593 4500791 "-" ["EV-COMP-AINF"] "TU0-14183" "nanXY" ["G7901", "EG12544"] 4504020 4506405 "+" ["EV-COMP-AINF", "EV-EXP-IEP-COREGULATION"] "TU0-14184" "yjhE" ["G7903"] 4506861 4507109 "+" ["EV-COMP-AINF"] -"TU0-14185" "insN-2" ["G7904"] 4507167 4509793 "+" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-14185" "insN-2" ["G7904"] 4507197 4509793 "+" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-14186" "insMI3" ["G0-10567", "G7905"] 4507466 4508942 "-" ["EV-COMP-AINF"] -"TU0-14188" "yjhV" ["G7907"] 4509009 4510133 "+" ["EV-COMP-AINF"] +"TU0-14188" "yjhV" ["G7907"] 4509804 4510133 "+" ["EV-COMP-AINF"] "TU0-14189" "insB7" ["G0-10569"] 4518721 4519224 "+" ["EV-COMP-AINF"] "TU0-14190" "yjhU" ["G7909"] 4519338 4520324 "-" ["EV-COMP-AINF"] "TU0-14191" "yjhF" ["EG12548"] 4520671 4522020 "-" ["EV-COMP-AINF"] @@ -1375,9 +1375,9 @@ "TU0-14203" "mdtM-yjiN" ["EG12576", "G7933"] 4565966 4568519 "-" ["EV-COMP-AINF"] "TU0-14204" "rpnD" ["G7934"] 4568998 4569918 "+" ["EV-COMP-AINF"] "TU0-14205" "yjiS" ["G7937"] 4571751 4571915 "+" ["EV-COMP-AINF"] -"TU0-14206" "yjiT" ["G7938"] 4572384 4573931 "+" ["EV-COMP-AINF"] +"TU0-14206" "yjiT" ["G7938"] 4572414 4573931 "+" ["EV-COMP-AINF"] "TU0-14207" "yjiV" ["EG11386"] 4574135 4576855 "+" ["EV-COMP-AINF"] -"TU0-14208" "yjiXA" ["G7941", "EG10021"] 4587909 4589109 "-" ["EV-COMP-AINF"] +"TU0-14208" "yjiXA" ["G7941", "EG10021"] 4587909 4589079 "-" ["EV-COMP-AINF"] "TU0-1421" "ydeA" ["EG11636"] 1616955 1618218 "+" [] "TU0-14210" "lgoT" ["EG12587"] 4593361 4594722 "-" ["EV-COMP-AINF"] "TU0-14211" "lgoR" ["G7944"] 4594937 4595947 "-" ["EV-COMP-AINF"] @@ -1388,7 +1388,7 @@ "TU0-14217" "prfC" ["EG12114"] 4609358 4611003 "+" ["EV-COMP-AINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-14218" "ytjA" ["G0-10475"] 4612128 4612289 "+" ["EV-COMP-AINF"] "TU0-14219" "yjjUV" ["G7952", "G7951"] 4612411 4614260 "+" ["EV-COMP-AINF"] -"TU0-1422" "ftsAZ" ["EG10347", "EG10339"] 103517 106456 "+" [] +"TU0-1422" "ftsAZ" ["EG10347", "EG10339"] 103561 106456 "+" [] "TU0-14220" "yjjW" ["G7953"] 4614680 4615543 "-" ["EV-COMP-AINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-14221" "yjjI" ["EG12171"] 4615515 4617065 "-" ["EV-COMP-AINF"] "TU0-14222" "yjjJ" ["EG12342"] 4621769 4623100 "+" ["EV-COMP-AINF"] @@ -1431,10 +1431,10 @@ "TU0-14274" "smg" ["EG11605"] 3431991 3432464 "-" [] "TU0-14275" "ygbK" ["G7418"] 2862197 2863501 "+" [] "TU0-14276" "modABC" ["EG10152", "EG10002", "EG12427"] 794995 797612 "+" [] -"TU0-14278" "fliDST" ["EG11389", "EG11388", "EG10841"] 2003842 2006078 "+" [] -"TU0-14282" "ftnB" ["G7033"] 1986738 1987428 "+" [] -"TU0-14286" "yqjA-mzrA" ["G7610", "G7609"] 3247501 3248822 "+" ["EV-COMP-AINF"] -"TU0-14287" "yjbEFGH" ["EG11926", "EG11925", "EG11924", "EG11923"] 4235649 4239730 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IMP-POLAR-MUTATION", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU0-14278" "fliDST" ["EG11389", "EG11388", "EG10841"] 2003872 2006078 "+" [] +"TU0-14282" "ftnB" ["G7033"] 1986799 1987428 "+" [] +"TU0-14286" "yqjA-mzrA" ["G7610", "G7609"] 3247548 3248822 "+" ["EV-COMP-AINF"] +"TU0-14287" "yjbEFGH" ["EG11926", "EG11925", "EG11924", "EG11923"] 4235858 4239730 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IMP-POLAR-MUTATION", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU0-14288" "mtr" ["EG10617"] 3304573 3305932 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-14290" "yrbG-kdsD" ["G7662", "EG12802"] 3340211 3342252 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-14291" "kdsC-lptCAB" ["EG11680", "G7665", "G7664", "G7663"] 3342226 3344669 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] @@ -1444,7 +1444,7 @@ "TU0-14295" "ybbB" ["EG11768"] 530132 531226 "-" ["EV-COMP-HINF"] "TU0-14296" "rhaM" ["EG11865"] 4093124 4093438 "-" ["EV-COMP-HINF"] "TU0-14298" "macAB" ["G6462", "G6461"] 919235 922293 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS", "EV-EXP-IEP-COREGULATION"] -"TU0-14299" "nhaR" ["EG11078"] 18715 19620 "+" ["EV-COMP-HINF"] +"TU0-14299" "nhaR" ["EG11078"] 18654 19620 "+" ["EV-COMP-HINF"] "TU0-14300" "yadMLKC" ["EG11678", "EG12325", "EG12326", "EG12327"] 149715 152812 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS", "EV-COMP-HINF"] "TU0-14301" "yadN" ["EG12328"] 156299 156883 "-" ["EV-COMP-HINF"] "TU0-14302" "glgBXCAP" ["EG10380", "EG10377", "EG10379", "EG10381", "EG10378"] 3564082 3573657 "-" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] @@ -1453,7 +1453,7 @@ "TU0-14305" "yfaE" ["EG12360"] 2348514 2348768 "+" ["EV-COMP-HINF"] "TU0-14306" "rlmM" ["EG11794"] 2940143 2941243 "-" ["EV-COMP-HINF"] "TU0-14307" "ygdD" ["EG11793"] 2941236 2941631 "-" ["EV-COMP-HINF"] -"TU0-14308" "yhfK" ["G7721"] 3486761 3488893 "+" ["EV-COMP-HINF"] +"TU0-14308" "yhfK" ["G7721"] 3486791 3488893 "+" ["EV-COMP-HINF"] "TU0-14311" "frwD" ["EG11912"] 4147138 4147479 "+" ["EV-COMP-HINF"] "TU0-14312" "ftsB" ["G7424"] 2872509 2872820 "-" ["EV-COMP-HINF"] "TU0-14313" "ispDF" ["EG11816", "G7423"] 2871301 2872490 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS", "EV-COMP-HINF"] @@ -1465,7 +1465,7 @@ "TU0-14320" "yfhG" ["EG12139"] 2688793 2689506 "-" ["EV-COMP-HINF"] "TU0-14321" "yfhA" ["EG11285"] 2687469 2688803 "-" ["EV-COMP-HINF"] "TU0-14322" "holC" ["EG11413"] 4483837 4484280 "-" ["EV-COMP-HINF"] -"TU0-14323" "yjhA" ["G7921"] 4538785 4539501 "-" ["EV-COMP-HINF"] +"TU0-14323" "yjhA" ["G7921"] 4538785 4539534 "-" ["EV-COMP-HINF"] "TU0-14324" "yjaH" ["EG11917"] 4200566 4201261 "+" [] "TU0-14325" "ymbA" ["G6492"] 1014896 1015459 "+" ["EV-COMP-HINF"] "TU0-14326" "yqgB" ["G7521"] 3085920 3086051 "-" ["EV-COMP-HINF"] @@ -1497,20 +1497,20 @@ "TU0-14359" "rcsDB" ["EG10821", "EG12385"] 2313452 2316827 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS", "EV-COMP-HINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-14362" "insH-7" ["G7092"] 2101895 2102875 "-" ["EV-COMP-HINF"] "TU0-14363" "insH-2" ["G6308"] 574737 575717 "-" ["EV-COMP-HINF"] -"TU0-14364" "mnmA" ["EG11344"] 1192667 1193803 "-" ["EV-COMP-HINF"] +"TU0-14364" "mnmA" ["EG11344"] 1192667 1193773 "-" ["EV-COMP-HINF"] "TU0-14365" "ybcH" ["EG12448"] 587091 587981 "-" ["EV-COMP-HINF"] "TU0-14366" "ybgTE" ["EG12395", "G0-10441"] 774196 774602 "+" ["EV-COMP-HINF"] "TU0-14368" "ybiB" ["EG11580"] 835248 836210 "+" ["EV-COMP-HINF"] "TU0-14369" "yebA" ["EG10013"] 1940313 1941635 "-" ["EV-COMP-HINF"] "TU0-14370" "aspT" ["EG30023"] 3946872 3946948 "+" ["EV-COMP-HINF"] "TU0-14371" "trpt" ["EG30105"] 3946957 3947032 "+" ["EV-COMP-HINF"] -"TU0-14372" "aspU" ["EG30024"] 228898 229052 "+" ["EV-COMP-HINF"] +"TU0-14372" "aspU" ["EG30024"] 228928 229052 "+" ["EV-COMP-HINF"] "TU0-14373" "gspCDEFGHIJKLMO" ["EG11359", "EG12173", "G7711", "G7710", "G7709", "G7708", "G7707", "G7706", "G7705", "G7704", "G7703", "G7702"] 3455527 3466220 "+" ["EV-COMP-AINF"] "TU0-14374" "gspCDEFGHIJKLMO" ["EG11359", "EG12173", "G7711", "G7710", "G7709", "G7708", "G7707", "G7706", "G7705", "G7704", "G7703", "G7702"] 3455482 3466220 "+" ["EV-COMP-AINF"] "TU0-14375" "gspAB" ["EG11263", "G7701"] 3453508 3455495 "-" ["EV-COMP-AINF"] "TU0-14376" "gspAB" ["EG11263", "G7701"] 3453508 3455519 "-" ["EV-COMP-AINF"] "TU0-14377" "gspAB" ["EG11263", "G7701"] 3453508 3455510 "-" ["EV-COMP-AINF"] -"TU0-14378" "cynTS" ["EG10175", "EG10176"] 358704 360278 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-14378" "cynTS" ["EG10175", "EG10176"] 358773 360278 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-14381" "relBE-hokD" ["EG11130", "EG11131", "EG10836"] 1645034 1645903 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-14385" "insJ" ["G7776"] 3720680 3721201 "+" ["EV-COMP-HINF"] "TU0-14386" "mreBCD" ["EG10610", "EG10609", "EG10608"] 3398387 3401193 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IMP-POLAR-MUTATION"] @@ -1522,13 +1522,13 @@ "TU0-14393" "dgt" ["EG10225"] 179214 180754 "+" ["EV-COMP-AINF"] "TU0-14394" "ileS-lspA-fkpB-ispH" ["EG11081", "EG11080", "EG10548", "EG10492"] 21833 27279 "+" ["EV-EXP-IEP", "EV-EXP-IMP-POLAR-MUTATION"] "TU0-14395" "ileS-lspA-fkpB-ispH" ["EG11081", "EG11080", "EG10548", "EG10492"] 22034 27279 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP"] -"TU0-14396" "crp" ["EG10164"] 3485861 3486792 "+" [] -"TU0-14398" "crp" ["EG10164"] 3485861 3486792 "+" [] +"TU0-14396" "crp" ["EG10164"] 3486025 3486792 "+" [] +"TU0-14398" "crp" ["EG10164"] 3486031 3486792 "+" [] "TU0-14399" "dapB" ["EG10206"] 28288 29272 "+" ["EV-COMP-HINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-14402" "cyaA" ["EG10170"] 3990790 3993699 "+" [] "TU0-14403" "cyaA" ["EG10170"] 3990774 3993699 "+" [] "TU0-14404" "dapE-ypfN" ["G0-10463", "EG10208"] 2591560 2592962 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-14405" "hypF" ["EG11551"] 2835173 2837455 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-14405" "hypF" ["EG11551"] 2835173 2837425 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-14406" "hypF" ["EG11551"] 2835173 2838014 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-14407" "hypF" ["EG11551"] 2835173 2838105 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-14408" "pdeL" ["EG11236"] 331873 333459 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] @@ -1548,13 +1548,13 @@ "TU0-14429" "csgDEFG" ["G6543", "G6544", "G6545", "G6546"] 1100851 1103335 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU0-14431" "dcuR" ["G7826"] 4349315 4350565 "-" [] "TU0-14433" "gadXW" ["EG12242", "EG12243"] 3663541 3665839 "-" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-14439" "rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC" ["EG10265", "EG10347", "EG10339", "EG10342", "EG10214", "EG10619", "EG10623", "EG10344", "EG10620", "EG10604", "EG10622", "EG10621", "EG10341", "EG11086", "EG11085"] 90010 107474 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU0-14443" "ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC" ["EG10265", "EG10347", "EG10339", "EG10342", "EG10214", "EG10619", "EG10623", "EG10344", "EG10620", "EG10604", "EG10622", "EG10621", "EG10341", "EG11086"] 90688 107474 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU0-14445" "ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC" ["EG10265", "EG10347", "EG10339", "EG10342", "EG10214", "EG10619", "EG10623", "EG10344", "EG10620", "EG10604", "EG10622", "EG10621", "EG10341", "EG11086"] 91012 107474 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU0-14439" "rsmH-ftsLIO-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC" ["G0-17085", "EG10265", "EG10347", "EG10339", "EG10342", "EG10214", "EG10619", "EG10623", "EG10344", "EG10620", "EG10604", "EG10622", "EG10621", "EG10341", "EG11086", "EG11085"] 90010 107474 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU0-14443" "ftsLIO-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC" ["G0-17085", "EG10265", "EG10347", "EG10339", "EG10342", "EG10214", "EG10619", "EG10623", "EG10344", "EG10620", "EG10604", "EG10622", "EG10621", "EG10341", "EG11086"] 90688 107474 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU0-14445" "ftsLIO-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC" ["G0-17085", "EG10265", "EG10347", "EG10339", "EG10342", "EG10214", "EG10619", "EG10623", "EG10344", "EG10620", "EG10604", "EG10622", "EG10621", "EG10341", "EG11086"] 91012 107474 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU0-14447" "ftsK" ["G6464"] 933138 937213 "+" [] "TU0-14448" "ftsK" ["G6464"] 932929 937213 "+" [] "TU0-14451" "hcp-hcr" ["G6456", "G6457"] 911182 914129 "-" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IMP-POLAR-MUTATION"] -"TU0-14452" "wzbc" ["G7107", "G7105", "G7106"] 2133490 2137243 "-" ["EV-EXP-IEP-COREGULATION"] +"TU0-14452" "wzbc" ["G7107", "G7105", "G7106"] 2133490 2137193 "-" ["EV-EXP-IEP-COREGULATION"] "TU0-14454" "yiaKLMNO-lyx-sgbHUE" ["EG12287", "EG12286", "EG12285", "EG12284", "EG12283", "EG12282", "EG12281", "EG12280", "EG12279"] 3742720 3750781 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-14455" "clpX-lon" ["EG10542", "EG10159"] 457202 461242 "+" ["EV-EXP-IEP-COREGULATION"] "TU0-14458" "chaC" ["EG12403"] 1272422 1273202 "+" ["EV-IC", "EV-EXP-IDA-BOUNDARIES-DEFINED"] @@ -1571,7 +1571,7 @@ "TU0-14471" "ybeZYX-lnt" ["EG10168", "G6361", "G6362", "G6363"] 689343 693469 "-" ["EV-EXP-IEP-COREGULATION"] "TU0-14472" "yciSM-pyrF-yciH" ["EG11128", "EG10809", "EG12691", "G6637"] 1340135 1342984 "+" ["EV-EXP-IEP-COREGULATION"] "TU0-14473" "ycjXF-tyrR" ["EG11042", "EG12870", "G6659"] 1384069 1388261 "+" ["EV-EXP-IEP-COREGULATION"] -"TU0-14474" "holC-valS" ["EG11067", "EG11413"] 4480982 4484280 "-" ["EV-EXP-IEP-COREGULATION"] +"TU0-14474" "holC-valS" ["EG11067", "EG11413"] 4480982 4484273 "-" ["EV-EXP-IEP-COREGULATION"] "TU0-14475" "creABC" ["EG10730", "EG11218", "EG11217"] 4635243 4638120 "+" ["EV-EXP-IEP-COREGULATION"] "TU0-14478" "nfuA" ["G7748"] 3545458 3546199 "+" [] "TU0-14479" "hslR-hslO" ["G7744", "G7743"] 3529110 3530652 "+" ["EV-EXP-IEP-COREGULATION"] @@ -1582,61 +1582,61 @@ "TU0-14489" "xerD-dsbC-recJ" ["EG10830", "EG11070", "EG11071"] 3036373 3039851 "-" ["EV-EXP-IEP-COREGULATION"] "TU0-14490" "clpPX" ["EG10159", "EG10158"] 456605 458755 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-14491" "rdgB-yggW" ["G7531", "G7530"] 3096620 3098403 "+" ["EV-EXP-IEP-COREGULATION"] -"TU0-14492" "dcd" ["EG11418"] 2141634 2142245 "-" [] -"TU0-14493" "yggDC" ["EG11161", "EG11162"] 3073976 3075225 "-" [] +"TU0-14492" "dcd" ["EG11418"] 2141634 2142215 "-" [] +"TU0-14493" "yggDC" ["EG11161", "EG11162"] 3073976 3075195 "-" [] "TU0-14494" "dksA-yadB" ["EG11362", "EG10230"] 159186 160722 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-14495" "yacG" ["EG12314"] 111649 111876 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-14496" "pdxY" ["G6879"] 1715026 1715919 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-14499" "pspE" ["EG10780"] 1369659 1370003 "+" [] -"TU0-14500" "yajO" ["G6236"] 437161 438165 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-14501" "nrdG" ["G812"] 4459900 4460394 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-14502" "fucR" ["EG10353"] 2939338 2940099 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-14503" "aceK" ["EG10026"] 4218566 4220332 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-14506" "glxK" ["G6283"] 541858 543033 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-14509" "gcvP" ["EG11810"] 3046126 3049071 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-14510" "rrfG" ["EG30075"] 2726069 2726218 "-" [] -"TU0-14511" "cysH" ["EG10189"] 2887578 2888342 "-" [] -"TU0-14512" "argQ" ["EG30013"] 2817784 2817890 "-" [] -"TU0-14513" "cadA" ["EG10131"] 4356470 4358647 "-" [] -"TU0-14514" "csgC" ["G6548"] 1104931 1105293 "+" [] +"TU0-14495" "yacG" ["EG12314"] 111649 111846 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-14496" "pdxY" ["G6879"] 1715026 1715889 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-14499" "pspE" ["EG10780"] 1369689 1370003 "+" [] +"TU0-14500" "yajO" ["G6236"] 437161 438135 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-14501" "nrdG" ["G812"] 4459900 4460364 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-14502" "fucR" ["EG10353"] 2939368 2940099 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-14503" "aceK" ["EG10026"] 4218596 4220332 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-14506" "glxK" ["G6283"] 541888 543033 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-14509" "gcvP" ["EG11810"] 3046126 3049041 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-14510" "rrfG" ["EG30075"] 2726069 2726188 "-" [] +"TU0-14511" "cysH" ["EG10189"] 2887578 2888312 "-" [] +"TU0-14512" "argQ" ["EG30013"] 2817784 2817860 "-" [] +"TU0-14513" "cadA" ["EG10131"] 4356470 4358632 "-" [] +"TU0-14514" "csgC" ["G6548"] 1104961 1105293 "+" [] "TU0-14515" "tcyJ" ["G7039"] 1999541 2000410 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-14516" "ybjN" ["G6447"] 892927 893433 "+" [] -"TU0-14518" "dhaM" ["EG12399"] 1247696 1249144 "-" [] +"TU0-14516" "ybjN" ["G6447"] 892957 893433 "+" [] +"TU0-14518" "dhaM" ["EG12399"] 1247696 1249114 "-" [] "TU0-14519" "tufA" ["EG11036"] 3470145 3471724 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-14520" "ubiX" ["EG11044"] 2428030 2428656 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-14521" "lacYA" ["EG10524", "EG10526"] 361140 363209 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-14523" "rfbACX" ["EG11980", "EG11979", "EG11978"] 2108337 2111049 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU0-14524" "rrlH-rrfH" ["EG30076", "EG30083"] 225729 228875 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU0-14525" "rfaZ-waaU" ["EG11423", "EG11426"] 3798239 3800226 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU0-14520" "ubiX" ["EG11044"] 2428030 2428626 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-14521" "lacYA" ["EG10524", "EG10526"] 361140 363179 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-14523" "rfbACX" ["EG11980", "EG11979", "EG11978"] 2108337 2111019 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU0-14524" "rrlH-rrfH" ["EG30076", "EG30083"] 225759 228875 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU0-14525" "rfaZ-waaU" ["EG11423", "EG11426"] 3798239 3800196 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU0-14527" "selD-topB" ["EG11014", "EG10943"] 1844932 1848024 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-14528" "rrlB-rrfB" ["EG30071", "EG30078"] 4168611 4171962 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU0-14529" "caiCDE" ["EG12608", "EG11557", "EG11558"] 34781 37854 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-14530" "rrlE-rrfE" ["EG30074", "EG30081"] 4210013 4213209 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU0-14531" "nuoMN" ["EG12093", "EG11773"] 2390005 2393071 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU0-14532" "mreCD" ["EG10610", "EG10609"] 3398387 3400008 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU0-14533" "rrlA-rrfA" ["EG30070", "EG30077"] 4037489 4040636 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU0-14535" "ykfGH-yafW-ykfI" ["G6120", "G6121", "G0-10432", "G6122"] 263328 264762 "-" [] -"TU0-14536" "glcBA" ["G7542", "EG20080"] 3119597 3123835 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU0-14537" "deoABD" ["EG10222", "EG10220", "EG10219"] 4618199 4621602 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU0-14538" "menD-yfbB-menBCE" ["EG12437", "EG11532", "EG11368", "EG12438", "EG10579"] 2373648 2379289 "-" [] +"TU0-14528" "rrlB-rrfB" ["EG30071", "EG30078"] 4168641 4171962 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU0-14529" "caiCDE" ["EG12608", "EG11557", "EG11558"] 34781 37824 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-14530" "rrlE-rrfE" ["EG30074", "EG30081"] 4210043 4213209 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU0-14531" "nuoMN" ["EG12093", "EG11773"] 2390005 2393041 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU0-14532" "mreCD" ["EG10610", "EG10609"] 3398387 3399978 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU0-14533" "rrlA-rrfA" ["EG30070", "EG30077"] 4037519 4040636 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU0-14535" "ykfGH-yafW-ykfI" ["G6120", "G6121", "G0-10432", "G6122"] 263328 264732 "-" [] +"TU0-14536" "glcBA" ["G7542", "EG20080"] 3119597 3123805 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU0-14537" "deoABD" ["EG10222", "EG10220", "EG10219"] 4618229 4621602 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU0-14538" "menD-yfbB-menBCE" ["EG12437", "EG11532", "EG11368", "EG12438", "EG10579"] 2373648 2379259 "-" [] "TU0-14540" "rutR" ["EG12301"] 1074113 1074880 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-14545" "safA-ydeO" ["G6789", "G6790"] 1582926 1584028 "-" ["EV-EXP-IEP-COREGULATION"] -"TU0-14546" "yaiA-aroM" ["EG10083", "EG11093"] 406949 408105 "+" [] -"TU0-14547" "alsBACE" ["EG11957", "EG11958", "EG11959", "EG12458"] 4307783 4312072 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU0-14546" "yaiA-aroM" ["EG10083", "EG11093"] 406979 408105 "+" [] +"TU0-14547" "alsBACE" ["EG11957", "EG11958", "EG11959", "EG12458"] 4307783 4312042 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU0-14548" "hfq-hflXKC" ["EG10435", "EG10436", "EG10437", "EG10438"] 4399801 4404304 "+" ["EV-EXP-IEP-COREGULATION"] -"TU0-14549" "tyrV-tpr" ["EG11016", "EG30108"] 1287009 1287358 "-" [] -"TU0-14550" "pspBCDE" ["EG10780", "EG10779", "EG10778", "EG10777"] 1368771 1370003 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU0-14551" "tdcBCDEFG" ["G7624", "G7626", "G7627", "EG11172", "EG10991", "EG10990"] 3258285 3266058 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU0-14552" "phnLMNOP" ["EG10725", "EG10724", "EG10723", "EG10722", "EG10721"] 4314344 4317925 "-" [] -"TU0-14553" "glnW-metU-glnVX" ["EG30031", "EG30029", "EG30059", "EG30030"] 696392 696860 "-" [] -"TU0-14555" "yibA" ["EG11187"] 3766307 3767179 "+" [] -"TU0-14558" "casDE-ygbTF" ["EG12845", "G7425", "G7426", "G7427"] 2878569 2881078 "-" ["EV-IC"] -"TU0-14559" "osmF-yehYXW" ["EG12009", "EG12010", "EG12011", "EG12012"] 2215745 2219511 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU0-14549" "tyrV-tpr" ["EG11016", "EG30108"] 1287009 1287328 "-" [] +"TU0-14550" "pspBCDE" ["EG10780", "EG10779", "EG10778", "EG10777"] 1368801 1370003 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU0-14551" "tdcBCDEFG" ["G7624", "G7626", "G7627", "EG11172", "EG10991", "EG10990"] 3258285 3266028 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU0-14552" "phnLMNOP" ["EG10725", "EG10724", "EG10723", "EG10722", "EG10721"] 4314344 4317895 "-" [] +"TU0-14553" "glnW-metU-glnVX" ["EG30031", "EG30029", "EG30059", "EG30030"] 696392 696830 "-" [] +"TU0-14555" "yibA" ["EG11187"] 3766337 3767179 "+" [] +"TU0-14558" "casDE-ygbTF" ["EG12845", "G7425", "G7426", "G7427"] 2878569 2881048 "-" ["EV-IC"] +"TU0-14559" "osmF-yehYXW" ["EG12009", "EG12010", "EG12011", "EG12012"] 2215745 2219481 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU0-14561" "mutL-miaA-hfq-hflXKC" ["EG10435", "EG10436", "EG10437", "EG10438", "EG10595", "EG11281"] 4397046 4404304 "+" [] "TU0-14562" "mutL-miaA-hfq-hflXKC" ["EG10435", "EG10436", "EG10437", "EG10438", "EG10595", "EG11281"] 4397100 4404304 "+" [] "TU0-14563" "miaA-hfq-hflXKC" ["EG10435", "EG10436", "EG10437", "EG10438", "EG10595"] 4398982 4404304 "+" ["EV-EXP-IEP-COREGULATION"] "TU0-14565" "miaA-hfq-hflXKC" ["EG10435", "EG10436", "EG10437", "EG10438", "EG10595"] 4399052 4404304 "+" ["EV-EXP-IEP-COREGULATION"] -"TU0-14567" "hfq-hflXKC" ["EG10435", "EG10436", "EG10437", "EG10438"] 4400258 4404304 "+" ["EV-EXP-IEP-COREGULATION"] +"TU0-14567" "hfq-hflXKC" ["EG10435", "EG10436", "EG10437", "EG10438"] 4400288 4404304 "+" ["EV-EXP-IEP-COREGULATION"] "TU0-14568" "hfq-hflXKC" ["EG10435", "EG10436", "EG10437", "EG10438"] 4400220 4404304 "+" ["EV-EXP-IEP-COREGULATION"] "TU0-14571" "yjjQ-bglJ" ["G7948", "G7947"] 4603319 4604837 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-14573" "secG-leuU" ["EG30050", "EG12095"] 3322035 3322587 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] @@ -1740,13 +1740,13 @@ "TU0-14749" "exuT" ["EG12738"] 3245043 3246522 "+" [] "TU0-14750" "citCDEFXG" ["G6339", "G6340", "G6341", "G6342", "G6343", "G6344"] 646631 652039 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU0-14751" "dpiBA" ["G6346", "G6345"] 652172 654542 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-14759" "tsaE-amiB-mutL-miaA-hfq-hflXKC" ["EG10435", "EG10436", "EG10437", "EG10438", "EG10595", "EG11281", "EG11363", "EG11757"] 4395555 4404304 "+" [] +"TU0-14759" "tsaE-amiB-mutL-miaA-hfq-hflXKC" ["EG10435", "EG10436", "EG10437", "EG10438", "EG10595", "EG11281", "EG11363", "EG11757"] 4395585 4404304 "+" [] "TU0-14761" "ahpCF" ["EG11385", "EG11384"] 638693 641318 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU0-14762" "ycgZ-ymgA-ariR-ymgC" ["G6607", "G6606", "G6605", "G6604"] 1215752 1216996 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-14763" "yrbN-deaD" ["EG10215", "G0-10651"] 3305971 3308086 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-14764" "ivbL-ilvBN-uhpABC" ["EG11053", "EG11052", "EG11051", "EG10502", "EG10494", "EG11275"] 3847305 3852988 "-" ["EV-EXP-IEP-COREGULATION"] +"TU0-14764" "ivbL-ilvBN-uhpABC" ["EG11053", "EG11052", "EG11051", "EG10502", "EG10494", "EG11275"] 3847305 3853019 "-" ["EV-EXP-IEP-COREGULATION"] "TU0-14765" "yfiRN" ["EG12880", "G7354"] 2741875 2743609 "+" ["EV-EXP-IMP-POLAR-MUTATION"] -"TU0-14766" "iraD" ["G0-16685", "G0-16687", "G0-16686", "G7923"] 4556574 4557385 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-14766" "iraD" ["G0-16685", "G0-16687", "G0-16686", "G7923"] 4556576 4557385 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-14767" "azuCR" ["G0-17112", "G0-10653"] 1987843 1988001 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION-NORTHERN"] "TU0-14769" "ykgR" ["G0-10654"] 313141 313285 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-14771" "yobF-cspC" ["EG12204", "G7000"] 1907226 1907793 "-" [] @@ -1791,41 +1791,41 @@ "TU0-1547" "tar-tap-cheRBYZ" ["EG10151", "EG10150", "EG10147", "EG10148", "EG10987", "EG10988"] 1966393 1972716 "-" ["EV-EXP-IMP-POLAR-MUTATION"] "TU0-1548" "ycgR" ["G6623"] 1243793 1244556 "-" [] "TU0-1549" "yhjH" ["EG12252"] 3678420 3679229 "-" ["EV-COMP-AINF"] -"TU0-1581" "cspA" ["EG10166"] 3719889 3720313 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-1581" "cspA" ["EG10166"] 3719889 3720316 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-1582" "cspA" ["EG10166"] 3719940 3720313 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-1601" "nanATEK-yhcH" ["G7675", "G7676", "G7677", "G436", "EG10637"] 3369014 3373620 "-" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IEP-COREGULATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-1603" "dcuC" ["G6347"] 654583 656083 "-" [] -"TU0-1681" "sodB" ["EG10954"] 1735262 1736114 "+" [] -"TU0-1701" "asr" ["G6855"] 1671297 1671720 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-1681" "sodB" ["EG10954"] 1735323 1736114 "+" [] +"TU0-1701" "asr" ["G6855"] 1671327 1671720 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-1721" "fxsA" ["G7832"] 4368603 4369140 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-1741" "ribA" ["EG11331"] 1338512 1339190 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-1742" "ribA" ["EG11331"] 1338512 1339234 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-1761" "osmC" ["EG10680"] 1556544 1557056 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] -"TU0-1762" "osmC" ["EG10680"] 1556544 1557056 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] +"TU0-1761" "osmC" ["EG10680"] 1556596 1557056 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] +"TU0-1762" "osmC" ["EG10680"] 1556606 1557056 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-1781" "pth-ychF" ["EG11404", "EG10785"] 1256721 1258542 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-1782" "ychF" ["EG11404"] 1256721 1257882 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-1783" "metK" ["EG10589"] 3086516 3087860 "+" ["EV-COMP-AINF"] +"TU0-1783" "metK" ["EG10589"] 3086577 3087860 "+" ["EV-COMP-AINF"] "TU0-1802" "pspF" ["EG12344"] 1366818 1367945 "-" ["EV-COMP-AINF-SINGLE-DIRECTON", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-1803" "pspF" ["EG12344"] 1366818 1367929 "-" ["EV-COMP-AINF-SINGLE-DIRECTON", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-1805" "pspF" ["EG12344"] 1366818 1368040 "-" ["EV-COMP-AINF-SINGLE-DIRECTON", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-1821" "cusCFBA" ["EG12367", "G6322", "G6321", "G6320"] 595519 601857 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-1821" "cusCFBA" ["EG12367", "G6322", "G6321", "G6320"] 595573 601857 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-1822" "cusRS" ["G6318", "G6319"] 593328 595462 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-1841" "inaA" ["EG11422"] 2348822 2349499 "-" [] "TU0-1881" "iscRSUA" ["EG12132", "G7324", "G7325", "G7326"] 2659563 2662199 "-" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP", "EV-EXP-IMP-POLAR-MUTATION"] "TU0-1902" "dcuD" ["G7679"] 3374766 3376236 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] -"TU0-1921" "gabDTP" ["EG11330", "EG10361", "EG11329"] 2791128 2795653 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IEP-COREGULATION"] +"TU0-1921" "gabDTP" ["EG11330", "EG10361", "EG11329"] 2791172 2795653 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IEP-COREGULATION"] "TU0-194009" "narUZYWV" ["EG10644", "EG10645", "EG10647", "EG10648", "EG12153"] 1535937 1544060 "-" ["EV-HTP-HEP"] "TU0-194010" "citR-ybdNM" ["G6330", "G6331", "G6332"] 634747 637618 "-" ["EV-EXP-IEP-COREGULATION"] "TU0-1962" "glcDEFGBA" ["G7542", "EG20080", "G7543", "G0-8601", "G7544", "G7545"] 3119597 3128076 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-1963" "glcC" ["G7546"] 3128187 3129036 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-1981" "osmY" ["EG11391"] 4610967 4612001 "+" [] +"TU0-1963" "glcC" ["G7546"] 3128206 3129036 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-1981" "osmY" ["EG11391"] 4611153 4612001 "+" [] "TU0-198686" "asflhD" ["G0-17119"] 1978176 1978395 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION-NORTHERN"] "TU0-198687" "stfZ" ["G0-17120"] 104948 105499 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION-NORTHERN", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-198689" "stfZ" ["G0-17120"] 104948 105499 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION-NORTHERN", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-198690" "stfZ" ["G0-17120"] 104948 105499 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION-NORTHERN", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-198689" "stfZ" ["G0-17120"] 104948 105421 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION-NORTHERN", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-198690" "stfZ" ["G0-17120"] 104948 105313 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION-NORTHERN", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-198692" "ameF" ["G0-17125"] 2911051 2911450 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION-NORTHERN"] "TU0-198693" "mazE" ["EG10571"] 2911091 2911339 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION-NORTHERN"] -"TU0-198694" "mazEF" ["EG11249", "EG10571"] 2910756 2911339 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION-NORTHERN"] +"TU0-198694" "mazEF" ["EG11249", "EG10571"] 2910756 2911450 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION-NORTHERN"] "TU0-198695" "xtpA" ["G0-17126"] 345252 345434 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION-NORTHERN"] "TU0-198696" "sfmAC" ["G6291", "G6290"] 558212 559666 "+" ["EV-EXP-IEP-MICROARRAY", "EV-EXP-IEP-RTPCR"] "TU0-198697" "oppA" ["EG10674"] 1300916 1302813 "+" ["EV-IC"] @@ -1833,46 +1833,70 @@ "TU0-198701" "yjcH-actP" ["EG11942", "EG11943"] 4283253 4285213 "-" ["EV-EXP-IEP-COREGULATION"] "TU0-198702" "argF-xynR" ["G6144", "EG10067"] 288404 290305 "-" ["EV-EXP-IEP-COREGULATION"] "TU0-198703" "dmsABC" ["EG10234", "EG10233", "EG10232"] 940959 944896 "+" ["EV-EXP-IEP-COREGULATION"] -"TU0-198704" "glpFK" ["EG10398", "EG10396"] 4115714 4118090 "-" ["EV-EXP-IEP-COREGULATION", "EV-IC"] -"TU0-198705" "sdhCDAB" ["EG10932", "EG10931", "EG10934", "EG10933"] 755177 758405 "+" ["EV-EXP-IEP-RNA-SEQ"] -"TU0-198707" "manXYZ-yobD" ["G6998", "EG10569", "EG10568", "EG10567"] 1902048 1905259 "+" ["EV-EXP-IEP-COREGULATION"] +"TU0-198704" "glpFK" ["EG10398", "EG10396"] 4115714 4118098 "-" ["EV-EXP-IEP-COREGULATION", "EV-IC"] +"TU0-198705" "sdhCDAB" ["EG10932", "EG10931", "EG10934", "EG10933"] 755122 758405 "+" ["EV-EXP-IEP-RNA-SEQ"] +"TU0-198707" "manXYZ-yobD" ["G6998", "EG10569", "EG10568", "EG10567"] 1902029 1905259 "+" ["EV-EXP-IEP-COREGULATION"] "TU0-198708" "tauABC" ["G6219", "G6218", "G6217"] 385232 387798 "+" ["EV-EXP-IEP-RNA-SEQ"] "TU0-198710" "ydfABC-dicFB-ydfD" ["EG11303", "EG10227", "EG31115", "EG11302", "EG11301", "EG11300"] 1648508 1649985 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION-NORTHERN"] "TU0-198711" "fepA-entD" ["EG10262", "EG10293"] 609459 612494 "-" ["EV-EXP-IEP-COREGULATION"] "TU0-198712" "fhuACDB" ["EG10303", "EG10305", "EG10304", "EG10302"] 167484 173444 "+" ["EV-EXP-IEP-COREGULATION"] "TU0-198713" "glnLG" ["EG10385", "EG10387"] 4053869 4056339 "-" ["EV-EXP-IEP-COREGULATION"] "TU0-198714" "dppBCDF" ["EG12628", "EG12627", "EG12626", "EG12625"] 3701864 3705790 "-" ["EV-EXP-IEP-COREGULATION"] -"TU0-2" "recN" ["EG10831"] 2751736 2753456 "+" ["EV-COMP-AINF"] +"TU0-198717" "asphoP" ["G0-17124"] 1190165 1190508 "+" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198718" "och5" ["G0-10701"] 3067187 3067344 "+" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198719" "sokE" ["G0-17110"] 607733 607792 "-" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198720" "yecV" ["G0-17024"] 1961837 1961881 "-" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198721" "yjbS" ["G0-10607"] 4268809 4269012 "-" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198722" "yjbT" ["G0-10606"] 4239777 4240055 "-" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198723" "ykgS" ["G0-16674"] 290510 290638 "+" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198724" "ykiC" ["G0-16726"] 383960 384079 "+" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198725" "ylcI" ["G0-10585"] 580251 580445 "-" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198726" "ymdG" ["G0-16732"] 1079120 1079146 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-IC"] +"TU0-198727" "ymiB" ["G0-16673"] 1346796 1346900 "+" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198728" "ymiD" ["G0-17018"] 1344647 1344775 "+" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198729" "ynbG" ["G0-10646"] 1465165 1465230 "-" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198730" "yncO" ["G0-16739"] 1530319 1530504 "-" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198731" "yneP" ["G0-16741"] 1579545 1579667 "+" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198732" "yfiS" ["G0-17029"] 2725925 2725987 "+" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198733" "ynfU" ["G0-17022"] 1640805 1640975 "+" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198734" "yoaM" ["G0-17025"] 2347350 2347385 "-" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198735" "yohP" ["G0-10652"] 2228982 2229065 "+" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198736" "yqfH" ["G0-16747"] 3032939 3033010 "-" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198737" "yqfI" ["G0-16748"] 3050958 3051041 "+" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198738" "yqhJ" ["G0-17032"] 3111266 3111325 "+" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198739" "ysdE" ["G0-17044"] 3853766 3853840 "-" ["EV-COMP-HINF-IGC", "EV-IC"] +"TU0-198740" "yqjD" ["G7612"] 3249270 3249680 "+" [] +"TU0-2" "recN" ["EG10831"] 2751759 2753456 "+" ["EV-COMP-AINF"] "TU0-2001" "rlmL-uup" ["G6488", "G6489"] 1007672 1011871 "+" ["EV-EXP-IMP-POLAR-MUTATION"] -"TU0-2021" "psiE" ["EG11209"] 4240247 4240735 "+" [] -"TU0-2041" "hpt" ["EG20098"] 141294 141967 "+" [] +"TU0-2021" "psiE" ["EG11209"] 4240300 4240735 "+" [] +"TU0-2041" "hpt" ["EG20098"] 141360 141967 "+" [] "TU0-2042" "gcd" ["EG10369"] 138801 141263 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-2081" "mfd" ["EG11619"] 1170518 1174028 "-" ["EV-COMP-AINF"] "TU0-2082" "mfd" ["EG11619"] 1170518 1173992 "-" ["EV-COMP-AINF"] -"TU0-2101" "ybjC-nfsA-rimK-ybjN" ["G6447", "EG10852", "EG11261", "EG12842"] 890835 893433 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-2101" "ybjC-nfsA-rimK-ybjN" ["G6447", "EG10852", "EG11261", "EG12842"] 890892 893433 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-2121" "rimK-ybjN" ["G6447", "EG10852"] 891876 893433 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-2261" "gadX" ["EG12243"] 3664915 3665839 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-2302" "metNIQ" ["EG11504", "EG11737", "EG11621"] 220113 222714 "-" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP"] "TU0-2342" "serA" ["EG10944"] 3057178 3058549 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-2402" "mhpABCDFE" ["M014", "G6205", "M013", "M012", "M011", "M010"] 368423 374881 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP"] +"TU0-2402" "mhpABCDFE" ["M014", "G6205", "M013", "M012", "M011", "M010"] 368519 374881 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP"] "TU0-2405" "mhpR-lacI" ["EG10525", "G6201"] 366428 368528 "-" ["EV-COMP-AINF"] "TU0-2421" "mgtA" ["G0-10689", "EG12525"] 4467280 4470321 "+" [] -"TU0-2422" "mgtA" ["G0-10689", "EG12525"] 4467329 4470321 "+" [] +"TU0-2422" "mgtA" ["G0-10689", "EG12525"] 4467363 4470321 "+" [] "TU0-2441" "treR" ["EG12202"] 4466284 4467275 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-2442" "treR" ["EG12202"] 4466284 4467279 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-2443" "treR" ["EG12202"] 4466284 4467347 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-2447" "mgrB" ["G7002"] 1908623 1908792 "-" ["EV-COMP-AINF"] -"TU0-2501" "topA" ["EG11013"] 1330724 1333645 "+" ["EV-COMP-AINF"] +"TU0-2501" "topA" ["EG11013"] 1330980 1333645 "+" ["EV-COMP-AINF"] "TU0-2502" "topA" ["EG11013"] 1330883 1333645 "+" ["EV-COMP-AINF"] "TU0-2503" "topA" ["EG11013"] 1330848 1333645 "+" ["EV-COMP-AINF"] -"TU0-2504" "topA" ["EG11013"] 1330724 1333645 "+" ["EV-COMP-AINF"] +"TU0-2504" "topA" ["EG11013"] 1330818 1333645 "+" ["EV-COMP-AINF"] "TU0-2505" "topA" ["EG11013"] 1330789 1333645 "+" ["EV-COMP-AINF"] "TU0-2521" "fiu" ["G6414"] 839249 841648 "-" ["EV-COMP-AINF"] "TU0-2562" "exbD" ["EG10272"] 3150552 3151390 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-2581" "fhuE" ["EG10306"] 1159325 1161647 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-2603" "gyrB" ["EG10424"] 3877532 3880150 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-2621" "sufABCDSE" ["G6905", "G6906", "G6907", "G6908", "G6909", "EG11378"] 1758874 1764418 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS", "EV-EXP-IEP-COREGULATION"] -"TU0-2644" "micF" ["EG30063"] 2312964 2313176 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-2644" "micF" ["EG30063"] 2313084 2313176 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-2649" "narU" ["EG12153"] 1542672 1544124 "-" ["EV-COMP-AINF"] "TU0-2661" "narU" ["EG12153"] 1542672 1544163 "-" ["EV-COMP-AINF"] "TU0-2701" "isrC-flu" ["G0-8905", "G7080"] 2071317 2074658 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] @@ -1883,23 +1907,23 @@ "TU0-2742" "hemF" ["EG12189"] 2553205 2554124 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-3" "cpxRA" ["EG10163", "EG10020"] 4103602 4105686 "-" ["EV-IC"] "TU0-3101" "emrKY" ["EG13283", "G7233"] 2480638 2483448 "-" ["EV-EXP-IEP-COREGULATION"] -"TU0-3102" "trxA" ["EG11031"] 3965623 3966136 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-3102" "trxA" ["EG11031"] 3965647 3966136 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-3103" "trxA" ["EG11031"] 3965687 3966136 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-3104" "trxC" ["EG11887"] 2718618 2719154 "+" ["EV-COMP-AINF"] +"TU0-3104" "trxC" ["EG11887"] 2718675 2719154 "+" ["EV-COMP-AINF"] "TU0-3122" "copA" ["G6260"] 508875 511411 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-3123" "glsA-ybaT" ["G6262", "G6261"] 511573 513868 "+" ["EV-COMP-HINF", "EV-EXP-IEP"] -"TU0-3124" "cueO" ["EG12318"] 137020 138633 "+" [] +"TU0-3124" "cueO" ["EG12318"] 137045 138633 "+" [] "TU0-3141" "chiA" ["EG11237"] 3467160 3469896 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-3145" "xdhABC" ["G7486", "G7487", "G7485"] 3000257 3003968 "+" ["EV-COMP-AINF"] -"TU0-3161" "cydAB" ["EG10174", "EG10173"] 771116 774181 "+" [] -"TU0-3162" "cydAB" ["EG10174", "EG10173"] 771116 774181 "+" [] +"TU0-3161" "cydAB" ["EG10174", "EG10173"] 771202 774181 "+" [] +"TU0-3162" "cydAB" ["EG10174", "EG10173"] 771213 774181 "+" [] "TU0-3163" "cydAB" ["EG10174", "EG10173"] 771368 774181 "+" [] -"TU0-3202" "fldB" ["EG12697"] 3039773 3040376 "+" [] +"TU0-3202" "fldB" ["EG12697"] 3039822 3040376 "+" [] "TU0-3301" "recF" ["EG10828"] 3880148 3881841 "-" [] "TU0-3302" "recF" ["EG10828"] 3880148 3881861 "-" [] "TU0-3304" "infC" ["EG10506"] 1800035 1801346 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-3305" "infC-rpmI-rplT" ["EG10881", "EG11231", "EG10506"] 1799363 1800818 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-3341" "patA" ["G7596"] 3219202 3220873 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-3341" "patA" ["G7596"] 3219458 3220873 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-3364" "rrsB-gltT-rrlB-rrfB" ["EG30071", "EG30078", "EG30032", "EG30085"] 4166484 4171962 "+" [] "TU0-3382" "gpmA" ["EG11699"] 786843 787632 "-" [] "TU0-3401" "ryhB" ["G0-8872"] 3580922 3581016 "-" ["EV-COMP-AINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] @@ -1918,9 +1942,9 @@ "TU0-3501" "argR" ["EG10070"] 3384602 3385173 "+" [] "TU0-3561" "asnW" ["G7069"] 2057926 2058102 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-3581" "argT-hisJQMP" ["EG10452", "EG10007", "EG12125", "EG12124", "EG10072"] 2423736 2427849 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU0-3602" "prpBCDE" ["G6200", "G6199", "G6198", "G6196"] 348498 354592 "+" ["EV-COMP-AINF"] +"TU0-3602" "prpBCDE" ["G6200", "G6199", "G6198", "G6196"] 348646 354592 "+" ["EV-COMP-AINF"] "TU0-3621" "yeaGH" ["G6970", "G6969"] 1866815 1870238 "+" [] -"TU0-3622" "yhdWXYZ" ["EG12837", "EG12836", "EG12835", "EG12834"] 3418846 3423194 "+" [] +"TU0-3622" "yhdWXYZ" ["EG12837", "EG12836", "EG12835", "EG12834"] 3418972 3423194 "+" [] "TU0-3623" "ddpXABCDF" ["G6777", "G6778", "G6779", "G6780", "G6781", "G6782"] 1557112 1563107 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU0-36398" "glnD" ["EG11411"] 185978 188655 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-36399" "glrR-glnB" ["EG10384", "EG11285"] 2687070 2688803 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] @@ -1954,20 +1978,20 @@ "TU0-3645" "rutABCDEFG" ["G6523", "G6522", "G6521", "G6520", "G6519", "G6518", "G6517"] 1068511 1074026 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU0-3721" "acs-yjcHG" ["EG11942", "EG11943", "EG11448"] 4283253 4287595 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-3723" "acs-yjcHG" ["EG11942", "EG11943", "EG11448"] 4283253 4287391 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-3741" "metBL" ["EG10590", "EG10582"] 4128579 4132456 "+" ["EV-EXP-IMP-POLAR-MUTATION"] +"TU0-3741" "metBL" ["EG10590", "EG10582"] 4128636 4132456 "+" ["EV-EXP-IMP-POLAR-MUTATION"] "TU0-3841" "rapA-rluA" ["EG12609", "EG11083"] 59687 63358 "-" ["EV-COMP-AINF"] "TU0-3862" "nhaAR" ["EG11078", "EG10652"] 17317 19620 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-3882" "proP" ["EG11612"] 4330284 4332004 "+" [] +"TU0-3882" "proP" ["EG11612"] 4330407 4332004 "+" [] "TU0-3901" "sra" ["EG11508"] 1555826 1556046 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-3941" "ftsQ" ["EG10342"] 102705 103985 "+" ["EV-EXP-IEP"] +"TU0-3941" "ftsQ" ["EG10342"] 102742 103985 "+" ["EV-EXP-IEP"] "TU0-3963" "fepDGC" ["EG10295", "EG10298", "EG10296"] 619384 622192 "-" [] -"TU0-3982" "csiE" ["G7329"] 2665358 2666715 "+" [] +"TU0-3982" "csiE" ["G7329"] 2665401 2666715 "+" [] "TU0-4" "yggN" ["EG12705"] 3100904 3101640 "-" [] -"TU0-4001" "csiD-ygaF-gabDTP" ["EG11330", "EG10361", "EG11329", "EG12387", "G7394"] 2788858 2795653 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IMP-POLAR-MUTATION"] +"TU0-4001" "csiD-ygaF-gabDTP" ["EG11330", "EG10361", "EG11329", "EG12387", "G7394"] 2788927 2795653 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IMP-POLAR-MUTATION"] "TU0-4021" "pdeR" ["G6639"] 1344757 1346843 "-" ["EV-COMP-AINF"] "TU0-4141" "dsbC" ["EG11070"] 3038112 3038834 "-" [] "TU0-4143" "mdoGH" ["EG11886", "EG11885"] 1109257 1113560 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IEP-COREGULATION"] -"TU0-4146" "hlpA-lpxD-fabZ-lpxA" ["EG10545", "EG11284", "EG10316", "EG10455"] 200354 203348 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-4146" "hlpA-lpxD-fabZ-lpxA" ["EG10545", "EG11284", "EG10316", "EG10455"] 200455 203348 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-4161" "bamC" ["EG10658"] 2597803 2599014 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-41656" "yceI" ["EG11820"] 1117901 1118476 "-" ["EV-IC"] "TU0-41673" "bhsA" ["G6570"] 1169019 1169330 "+" ["EV-IC"] @@ -1988,7 +2012,7 @@ "TU0-41901" "sdiA" ["EG10935"] 1996110 1996897 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-4191" "yggN" ["EG12705"] 3100904 3101744 "-" [] "TU0-4192" "ygiM" ["EG12434"] 3201104 3201827 "+" [] -"TU0-4201" "hemA-prfA-prmC" ["EG12424", "EG10761", "EG10427"] 1263651 1266927 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-4201" "hemA-prfA-prmC" ["EG12424", "EG10761", "EG10427"] 1263676 1266927 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-4202" "hemA" ["EG10427"] 1263583 1264970 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-4204" "bamA" ["G6093"] 197821 200360 "+" [] "TU0-4205" "yqjA-mzrA" ["G7610", "G7609"] 3247643 3248822 "+" ["EV-COMP-AINF"] @@ -1996,7 +2020,7 @@ "TU0-4221" "bamD" ["G7352"] 2736006 2736883 "+" ["EV-COMP-AINF"] "TU0-4222" "rseP" ["EG12436"] 196470 197898 "+" [] "TU0-42252" "gntU" ["EG12631"] 3575688 3577061 "-" ["EV-IC", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-4242" "yghF" ["G7537"] 3112054 3113049 "-" ["EV-COMP-AINF"] +"TU0-4242" "yghF" ["G7537"] 3112054 3112899 "-" ["EV-COMP-AINF"] "TU0-42448" "yciT" ["G6638"] 1343597 1344510 "-" ["EV-EXP-IEP"] "TU0-42449" "yffO-yffP" ["G7277", "G7276"] 2562053 2563117 "+" ["EV-EXP-IEP-COREGULATION"] "TU0-42451" "araFGH" ["EG10059", "EG10058", "EG10057"] 1982554 1986148 "-" ["EV-EXP-IEP-COREGULATION"] @@ -2095,7 +2119,7 @@ "TU0-42589" "relA" ["EG10835"] 2911417 2913700 "-" ["EV-EXP-IEP"] "TU0-42590" "relA" ["EG10835"] 2911417 2914318 "-" ["EV-EXP-IEP"] "TU0-42593" "ariR" ["G6606"] 1216369 1216635 "+" [] -"TU0-42594" "gltI-sroC-gltJKL" ["EG12663", "EG12662", "EG12661", "G0-9383", "G6359"] 684530 687777 "-" [] +"TU0-42594" "gltI-sroC-gltJKL" ["EG12663", "EG12662", "EG12661", "G0-9383", "G6359"] 684530 687747 "-" [] "TU0-42595" "metG" ["EG10586"] 2193758 2196366 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-42596" "yibN-grxC-secB-gpsA" ["EG12294", "EG12295", "EG20091", "EG10937"] 3782642 3785195 "-" ["EV-EXP-IMP-POLAR-MUTATION"] "TU0-42599" "ascB" ["EG10085"] 2840942 2842414 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] @@ -2166,7 +2190,7 @@ "TU0-44207" "paaJ" ["G6718"] 1460644 1462098 "+" ["EV-EXP-IEP"] "TU0-44208" "nanY" ["G7901"] 4505266 4506405 "+" ["EV-EXP-IEP"] "TU0-44209" "nanY" ["G7901"] 4505260 4506405 "+" ["EV-EXP-IEP"] -"TU0-4421" "nagE" ["EG10635"] 703715 705965 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION"] +"TU0-4421" "nagE" ["EG10635"] 703840 705965 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION"] "TU0-44210" "xapB" ["EG13159"] 2522698 2524251 "-" ["EV-EXP-IEP"] "TU0-44211" "xapB" ["EG13159"] 2522698 2524303 "-" ["EV-EXP-IEP"] "TU0-44212" "xapB" ["EG13159"] 2522698 2524375 "-" ["EV-EXP-IEP"] @@ -2183,10 +2207,10 @@ "TU0-44224" "trxA" ["EG11031"] 3965650 3966136 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-44225" "infB" ["EG10505"] 3313185 3316027 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-44226" "nusA-infB" ["EG10505", "EG10665"] 3313185 3317602 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-4441" "norVW" ["EG12450", "G7413"] 2832298 2835045 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IEP"] +"TU0-4441" "norVW" ["EG12450", "G7413"] 2832439 2835045 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IEP"] "TU0-4444" "seqA-pgm" ["EG12144", "EG12197"] 712942 715242 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION"] -"TU0-4461" "garD" ["EG12522"] 3275252 3276853 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-4462" "gudPXD" ["G7445", "G7446", "G7447"] 2918045 2922130 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-4461" "garD" ["EG12522"] 3275282 3276853 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-4462" "gudPXD" ["G7445", "G7446", "G7447"] 2918045 2922100 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-4482" "mngAB" ["EG13236", "EG13235"] 765811 770611 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-4483" "rpiB" ["EG11827"] 4313257 4313827 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-4501" "cdaR" ["EG12335"] 182447 183620 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] @@ -2205,14 +2229,14 @@ "TU0-45158" "ibsD" ["G0-10630"] 3194701 3194825 "+" [] "TU0-45160" "yrbN-deaD" ["EG10215", "G0-10651"] 3305971 3308698 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-45163" "pykF" ["EG10804"] 1755600 1757110 "+" ["EV-IC"] -"TU0-45164" "micF" ["EG30063"] 2312964 2313176 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-45165" "rrsA-ileT-alaT-rrlA-rrfA" ["EG30070", "EG30077", "EG30008", "EG30043", "EG30084"] 4035106 4040636 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-45164" "micF" ["EG30063"] 2313084 2313176 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-45165" "rrsA-ileT-alaT-rrlA-rrfA" ["EG30070", "EG30077", "EG30008", "EG30043", "EG30084"] 4035239 4040636 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-45166" "ycgZ-ymgA-ariR-ymgC" ["G6607", "G6606", "G6605", "G6604"] 1215752 1216996 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-45167" "murR" ["G7262"] 2544752 2545793 "-" ["EV-COMP-AINF"] "TU0-45168" "mnmG-rsmG" ["EG10375", "EG10376"] 3923057 3925674 "-" ["EV-COMP-AINF", "EV-EXP-IMP-POLAR-MUTATION"] "TU0-45169" "acnA" ["G0-16736", "EG11325"] 1335424 1338506 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-45170" "glk" ["EG12957"] 2508424 2509461 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-45171" "hyaABCDEF" ["EG10468", "EG10469", "EG10470", "EG10471", "EG10472", "EG10473"] 1031917 1037634 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IEP-COREGULATION"] +"TU0-45171" "hyaABCDEF" ["EG10468", "EG10469", "EG10470", "EG10471", "EG10472", "EG10473"] 1031984 1037634 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IEP-COREGULATION"] "TU0-45172" "ssrS" ["EG30099"] 3055759 3056283 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-45173" "ssrS-ygfA" ["EG11158", "EG30099"] 3055759 3056789 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-45174" "mdoGH" ["EG11886", "EG11885"] 1109257 1113560 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IEP-COREGULATION"] @@ -2223,39 +2247,39 @@ "TU0-45179" "galETKM" ["EG11698", "EG10363", "EG10366", "EG10362"] 787689 792081 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-45180" "groSL" ["EG10599", "EG10600"] 4370616 4372671 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU0-45181" "adhE" ["EG10031"] 1295446 1298413 "-" ["EV-EXP-TAS"] -"TU0-45182" "gltBDF" ["EG10403", "EG10404", "EG11514"] 3354157 3361940 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-45182" "gltBDF" ["EG10403", "EG10404", "EG11514"] 3354509 3361940 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-45183" "araFGH" ["EG10059", "EG10058", "EG10057"] 1982554 1986238 "-" ["EV-EXP-IEP-COREGULATION"] "TU0-45184" "cyaR" ["G0-8878"] 2167114 2167200 "+" ["EV-COMP-AINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-45185" "cyaR" ["G0-8878"] 2167114 2167200 "+" ["EV-COMP-AINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-45186" "pqiABC" ["G6492", "G6491", "G6490"] 1011659 1015459 "+" ["EV-EXP-IMP-POLAR-MUTATION"] "TU0-45187" "dnaN-recF" ["EG10828", "EG10242"] 3880148 3882733 "-" ["EV-EXP-IMP-POLAR-MUTATION"] -"TU0-45188" "metK" ["EG10589"] 3086516 3087860 "+" ["EV-COMP-AINF"] +"TU0-45188" "metK" ["EG10589"] 3086577 3087860 "+" ["EV-COMP-AINF"] "TU0-45189" "eno" ["EG10258"] 2906643 2908152 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-45190" "sgrST-setA" ["G0-10617", "EG11754", "G0-9941"] 77313 78799 "+" ["EV-COMP-AINF", "EV-COMP-AINF-SINGLE-DIRECTON", "EV-EXP-IEP-COREGULATION"] -"TU0-45191" "aidB" ["EG11811"] 4414193 4415900 "+" [] +"TU0-45190" "sgrST-setA" ["G0-10617", "EG11754", "G0-9941"] 77367 78799 "+" ["EV-COMP-AINF", "EV-COMP-AINF-SINGLE-DIRECTON", "EV-EXP-IEP-COREGULATION"] +"TU0-45191" "aidB" ["EG11811"] 4414247 4415900 "+" [] "TU0-45192" "sixA" ["G7211"] 2456327 2456999 "-" ["EV-COMP-AINF"] "TU0-45193" "mlc-ynfK" ["G6851", "G6852"] 1666524 1668591 "-" ["EV-COMP-AINF", "EV-EXP-IEP-COREGULATION"] "TU0-45194" "arrS" ["G0-10694"] 3657985 3658054 "-" ["EV-COMP-AINF-SINGLE-DIRECTON", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-45195" "cbpA-cbpM" ["EG12194", "EG12193"] 1062550 1064037 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU0-45196" "dnaN-recF" ["EG10828", "EG10242"] 3880148 3882348 "-" ["EV-EXP-IMP-POLAR-MUTATION"] -"TU0-45197" "csiE" ["G7329"] 2665358 2666715 "+" [] +"TU0-45197" "csiE" ["G7329"] 2665401 2666715 "+" [] "TU0-45198" "rrsG-gltW-rrlG-rrfG" ["EG30075", "EG30082", "EG30035", "EG30089"] 2726069 2731448 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-45199" "xerD-dsbC-recJ" ["EG10830", "EG11070", "EG11071"] 3036373 3039851 "-" ["EV-EXP-IEP-COREGULATION"] "TU0-45200" "dps" ["EG11415"] 848408 848950 "-" [] "TU0-45201" "csgDEFG" ["G6543", "G6544", "G6545", "G6546"] 1100851 1103335 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU0-45202" "rhaSR" ["EG10843", "EG10842"] 4097599 4099494 "+" ["EV-EXP-IEP-COREGULATION"] +"TU0-45202" "rhaSR" ["EG10843", "EG10842"] 4097711 4099494 "+" ["EV-EXP-IEP-COREGULATION"] "TU0-45203" "tpiA" ["EG11015"] 4110740 4111569 "-" ["EV-IC"] "TU0-45204" "pstCAB-phoU" ["EG10735", "EG10783", "EG10782", "EG10784"] 3906853 3910542 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-45205" "poxB" ["EG10754"] 909331 911076 "-" ["EV-EXP-IEP"] "TU0-45206" "gyrB" ["EG10424"] 3877532 3880150 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-45207" "proVWX" ["EG10773", "EG10772", "EG10771"] 2804563 2808124 "+" ["EV-EXP-IMP-POLAR-MUTATION"] "TU0-45208" "gor" ["EG10412"] 3646112 3647651 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] -"TU0-45209" "rrsC-gltU-rrlC-rrfC" ["EG30072", "EG30079", "EG30033", "EG30086"] 3941395 3947067 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-45209" "rrsC-gltU-rrlC-rrfC" ["EG30072", "EG30079", "EG30033", "EG30086"] 3941516 3947067 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-4521" "gntR" ["EG12630"] 3577622 3578818 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-45210" "glnS" ["EG10390"] 705999 707978 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-45211" "murQP" ["G7264", "G7263"] 2545733 2548097 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU0-45212" "clpB" ["EG10157"] 2731557 2734205 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-45213" "mpl" ["EG12440"] 4455690 4457158 "+" [] +"TU0-45213" "mpl" ["EG12440"] 4455728 4457158 "+" [] "TU0-45214" "pstSCA" ["EG10782", "EG10784", "EG10734"] 3908495 3911568 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-45215" "pstS" ["EG10734"] 3910443 3911568 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-45216" "pstSCAB-phoU" ["EG10735", "EG10783", "EG10782", "EG10784", "EG10734"] 3906853 3911568 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] @@ -2265,9 +2289,9 @@ "TU0-4522" "gntR" ["EG12630"] 3577622 3578862 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-45220" "pykA" ["EG10803"] 1937494 1939091 "+" ["EV-COMP-AINF"] "TU0-45221" "csrA" ["EG11447"] 2818961 2819373 "-" ["EV-COMP-AINF"] -"TU0-45222" "pdhR-aceEF-lpdA" ["EG11088", "EG10024", "EG10025", "EG10543"] 121656 129394 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-45222" "pdhR-aceEF-lpdA" ["EG11088", "EG10024", "EG10025", "EG10543"] 122034 129394 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-45223" "topA" ["EG11013"] 1330789 1333645 "+" ["EV-COMP-AINF"] -"TU0-45224" "csgBAC" ["G6548", "G6547", "EG11489"] 1103821 1105293 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-45224" "csgBAC" ["G6548", "G6547", "EG11489"] 1103859 1105293 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-45225" "frdABCD" ["EG10333", "EG10332", "EG10331", "EG10330"] 4378966 4382412 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-45226" "xapAB" ["EG13159", "G85"] 2522698 2524910 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IEP-COREGULATION"] "TU0-45227" "rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF" ["EG30091", "EG30103", "EG30073", "EG30080", "EG30009", "EG30044", "EG30087"] 3423371 3429047 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] @@ -2276,13 +2300,13 @@ "TU0-4523" "gntR" ["EG12630"] 3577622 3578880 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-45230" "osmB" ["EG10679"] 1343110 1343369 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-45231" "gadBC" ["G6786", "EG11490"] 1568904 1572072 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-45232" "ptsHI-crr" ["EG10788", "EG10789", "EG10165"] 2533437 2536380 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-45232" "ptsHI-crr" ["EG10788", "EG10789", "EG10165"] 2533501 2536380 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-45233" "gpmA" ["EG11699"] 786843 787670 "-" [] -"TU0-45234" "osmY" ["EG11391"] 4610967 4612001 "+" [] +"TU0-45234" "osmY" ["EG11391"] 4611153 4612001 "+" [] "TU0-45235" "ilvY" ["EG10503"] 3956883 3957867 "-" [] -"TU0-45236" "pfkA" ["EG10699"] 4107438 4108732 "+" ["EV-COMP-AINF"] +"TU0-45236" "pfkA" ["EG10699"] 4107474 4108732 "+" ["EV-COMP-AINF"] "TU0-45237" "pstB-phoU" ["EG10735", "EG10783"] 3906853 3908556 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-45238" "gabDTP" ["EG11330", "EG10361", "EG11329"] 2791128 2795653 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IEP-COREGULATION"] +"TU0-45238" "gabDTP" ["EG11330", "EG10361", "EG11329"] 2791172 2795653 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IEP-COREGULATION"] "TU0-45239" "pfkA" ["EG10699"] 4107522 4108732 "+" ["EV-COMP-AINF"] "TU0-45240" "hepA" ["EG11083"] 60358 63588 "-" ["EV-EXP-IEP"] "TU0-45241" "acs-yjcHG" ["EG11942", "EG11943", "EG11448"] 4283253 4287391 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] @@ -2290,7 +2314,7 @@ "TU0-45243" "alkA" ["EG11222"] 2146692 2147559 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-45244" "pykF" ["EG10804"] 1755663 1757110 "+" ["EV-IC"] "TU0-45245" "pcnB-folK" ["EG11374", "EG10690"] 157253 159171 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-45246" "ynfEFGH-dmsD" ["G6849", "G6848", "G6847", "G6846", "G6845"] 1657962 1665120 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU0-45246" "ynfEFGH-dmsD" ["G6849", "G6848", "G6847", "G6846", "G6845"] 1658003 1665120 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU0-45247" "eptB" ["EG12267"] 3708784 3710581 "-" ["EV-COMP-AINF"] "TU0-45248" "ada-alkB" ["EG10037", "EG10029"] 2308691 2310427 "-" ["EV-EXP-IMP-POLAR-MUTATION"] "TU0-45249" "mlrA" ["EG12008"] 2214840 2215597 "+" ["EV-COMP-AINF"] @@ -2303,45 +2327,45 @@ "TU0-45255" "can" ["EG12319"] 142008 142703 "-" ["EV-COMP-AINF-SINGLE-DIRECTON", "EV-EXP-IEP"] "TU0-45256" "mglBAC" ["EG10594", "EG10592", "EG10593"] 2236743 2240566 "-" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IEP-COREGULATION"] "TU0-45257" "csgDEFG" ["G6543", "G6544", "G6545", "G6546"] 1100851 1103344 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-45258" "patA" ["G7596"] 3219202 3220873 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-45259" "pqiABC" ["G6492", "G6491", "G6490"] 1011623 1015459 "+" ["EV-EXP-IMP-POLAR-MUTATION"] +"TU0-45258" "patA" ["G7596"] 3219458 3220873 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-45259" "pqiABC" ["G6492", "G6491", "G6490"] 1011666 1015459 "+" ["EV-EXP-IMP-POLAR-MUTATION"] "TU0-45260" "pgi" ["EG10702"] 4233722 4235407 "+" ["EV-COMP-AINF"] "TU0-45261" "lapAB" ["EG12691", "G6637"] 1340135 1341727 "+" ["EV-COMP-AINF", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS", "EV-EXP-IEP-COREGULATION"] "TU0-45262" "yciSM-pyrF-yciH" ["EG11128", "EG10809", "EG12691", "G6637"] 1340135 1342984 "+" ["EV-EXP-IEP-COREGULATION"] -"TU0-45263" "gapA" ["EG10367"] 1862691 1863766 "+" ["EV-COMP-AINF"] +"TU0-45263" "gapA" ["EG10367"] 1862735 1863766 "+" ["EV-COMP-AINF"] "TU0-45264" "mnt-btuF-yadS" ["EG11090", "EG12334", "EG12333"] 177001 179183 "-" ["EV-COMP-AINF"] "TU0-45265" "appCBA-yccB" ["G0-10588", "EG11380", "EG11379", "EG10049"] 1037710 1041915 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IMP-POLAR-MUTATION"] "TU0-45266" "oxyR" ["EG10681"] 4158457 4159407 "+" [] "TU0-45267" "dnaN-recF" ["EG10828", "EG10242"] 3880148 3882590 "-" ["EV-EXP-IMP-POLAR-MUTATION"] "TU0-45268" "gadAX" ["EG12243", "EG50009"] 3664915 3667607 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-45269" "rrsH-ileV-alaV-rrlH-rrfH" ["EG30076", "EG30083", "EG30010", "EG30045", "EG30090"] 223304 228875 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-45269" "rrsH-ileV-alaV-rrlH-rrfH" ["EG30076", "EG30083", "EG30010", "EG30045", "EG30090"] 223485 228875 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-45270" "eno" ["EG10258"] 2906643 2907968 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-45271" "ftsQAZ" ["EG10342", "EG10339", "EG10347"] 102703 106456 "+" ["EV-EXP-IEP-COREGULATION"] +"TU0-45271" "ftsQAZ" ["EG10342", "EG10339", "EG10347"] 102867 106456 "+" ["EV-EXP-IEP-COREGULATION"] "TU0-45272" "ybeD-lipB" ["EG11591", "EG11592"] 661637 662706 "-" ["EV-EXP-IEP-COREGULATION"] "TU0-45273" "epd-pgk-fbaA" ["EG10282", "EG10703", "EG10368"] 3070165 3073823 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-45274" "epd-pgk" ["EG10703", "EG10368"] 3071431 3073823 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-45275" "rrsB-gltT-rrlB-rrfB" ["EG30071", "EG30078", "EG30032", "EG30085"] 4166224 4171962 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-45276" "asr" ["G6855"] 1671297 1671720 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-45277" "rrsE-gltV-rrlE-rrfE" ["EG30074", "EG30081", "EG30034", "EG30088"] 4207693 4213209 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-45275" "rrsB-gltT-rrlB-rrfB" ["EG30071", "EG30078", "EG30032", "EG30085"] 4166367 4171962 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-45276" "asr" ["G6855"] 1671327 1671720 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-45277" "rrsE-gltV-rrlE-rrfE" ["EG30074", "EG30081", "EG30034", "EG30088"] 4207863 4213209 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-45278" "rpoE-rseABC" ["G7347", "G7348", "EG12341", "EG11897"] 2707322 2710087 "-" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-45279" "hdeD" ["EG11495"] 3656960 3657567 "+" [] -"TU0-45280" "ihfB" ["EG10441"] 963429 964173 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-45280" "ihfB" ["EG10441"] 963749 964173 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-45281" "cpxRA" ["EG10163", "EG10020"] 4103602 4105686 "-" ["EV-IC"] "TU0-45282" "rseD-rpoE-rseABC" ["G0-16690", "G7347", "G7348", "EG12341", "EG11897"] 2707322 2710339 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IEP-COREGULATION"] "TU0-45283" "osmE" ["EG10044"] 1821865 1822283 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-45284" "bolA" ["EG10125"] 454386 454865 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-45284" "bolA" ["EG10125"] 454434 454865 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-45285" "lon" ["EG10542"] 458815 461242 "+" ["EV-COMP-AINF", "EV-EXP-IEP"] "TU0-45287" "C0293" ["G0-8897"] 1196711 1196782 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-45288" "hemF" ["EG12189"] 2552982 2554124 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-45289" "hemF" ["EG12189"] 2552952 2554124 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-45291" "tnaAB" ["EG11006", "EG11005"] 3888730 3891483 "+" ["EV-EXP-IEP-COREGULATION"] +"TU0-45291" "tnaAB" ["EG11006", "EG11005"] 3888513 3891483 "+" ["EV-EXP-IEP-COREGULATION"] "TU0-4545" "galETKM" ["EG11698", "EG10363", "EG10366", "EG10362"] 787689 792177 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-4562" "dcuB-fumB" ["EG10357", "EG10006"] 4345631 4349091 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-4604" "znuCB" ["EG12368", "G7018"] 1942624 1944199 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-4623" "zntA" ["EG12215"] 3606397 3608649 "+" [] +"TU0-4604" "znuCB" ["EG12368", "G7018"] 1942634 1944199 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-4623" "zntA" ["EG12215"] 3606422 3608649 "+" [] "TU0-4624" "nfsB" ["EG50005"] 604771 605453 "-" ["EV-COMP-AINF"] "TU0-4642" "znuA" ["G7017"] 1941651 1942661 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-4681" "idnK" ["EG12152"] 4494476 4495186 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-4681" "idnK" ["EG12152"] 4494597 4495186 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-4682" "idnDOTR" ["G7891", "EG12539", "G7892", "G7893"] 4490141 4494435 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-4701" "lacZYA" ["EG10524", "EG10526", "EG10527"] 361140 366358 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IEP-COREGULATION"] "TU0-4702" "lacZYA" ["EG10524", "EG10526", "EG10527"] 361140 366365 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IEP-COREGULATION"] @@ -2358,45 +2382,45 @@ "TU0-4901" "gadEF" ["G0-16680", "EG11544"] 3658242 3659082 "+" [] "TU0-4903" "hdeD" ["EG11495"] 3656960 3657567 "+" [] "TU0-4904" "gapA-yeaD" ["G6966", "EG10367"] 1862618 1864734 "+" ["EV-EXP-IEP-COREGULATION"] -"TU0-4905" "gapA" ["EG10367"] 1862691 1863766 "+" ["EV-COMP-AINF"] -"TU0-4906" "gapA" ["EG10367"] 1862555 1863766 "+" ["EV-COMP-AINF"] +"TU0-4905" "gapA" ["EG10367"] 1862735 1863766 "+" ["EV-COMP-AINF"] +"TU0-4906" "gapA" ["EG10367"] 1862597 1863766 "+" ["EV-COMP-AINF"] "TU0-4907" "gapA" ["EG10367"] 1862526 1863766 "+" ["EV-COMP-AINF"] "TU0-4924" "idnR" ["G7891"] 4490141 4491182 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-4927" "gntT" ["EG12380"] 3546333 3547875 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-4928" "gntT" ["EG12380"] 3546333 3547875 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-4927" "gntT" ["EG12380"] 3546449 3547875 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-4928" "gntT" ["EG12380"] 3546446 3547875 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-4929" "asnB" ["EG10092"] 697513 699222 "-" ["EV-COMP-AINF"] "TU0-4931" "lon" ["EG10542"] 458815 461242 "+" ["EV-COMP-AINF", "EV-EXP-IEP"] "TU0-4961" "gntP" ["EG12563"] 4549922 4551334 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-4981" "gntXY" ["G7748", "G7747"] 3544625 3546199 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-4981" "gntXY" ["G7748", "G7747"] 3544667 3546199 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-5" "plsX-fabHDG" ["EG11318", "EG11317", "EG10277", "EG11437"] 1147577 1151404 "+" ["EV-EXP-IMP-POLAR-MUTATION"] "TU0-5001" "ibpB" ["EG11535"] 3866469 3866981 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-5003" "groSL" ["EG10599", "EG10600"] 4370616 4372671 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU0-5021" "uxaCA" ["EG12734", "G81"] 3241827 3244857 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IEP"] -"TU0-5041" "uxuR" ["EG20249"] 4554411 4555349 "+" ["EV-EXP-IEP", "EV-EXP-IMP"] +"TU0-5041" "uxuR" ["EG20249"] 4554458 4555349 "+" ["EV-EXP-IEP", "EV-EXP-IMP"] "TU0-5061" "metA" ["EG10581"] 4214159 4215209 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-5062" "yjaB" ["EG11207"] 4213680 4214123 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-5081" "uidABC" ["G6866", "EG11658", "EG11055"] 1691586 1696152 "-" [] "TU0-5082" "uidR" ["G6867"] 1696462 1697075 "-" ["EV-EXP-IMP", "EV-EXP-IEP"] -"TU0-5101" "gnd" ["EG10411"] 2099862 2101324 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-5101" "gnd-gndA" ["G0-16693", "EG10411"] 2099862 2101324 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-5121" "fusA-tufA" ["EG11036", "EG10360"] 3470145 3473685 "-" ["EV-IC"] -"TU0-5162" "ulaABCDEF" ["G7860", "G7859", "G7858", "EG12495", "EG12494", "G7856"] 4419866 4424386 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IEP-COREGULATION"] +"TU0-5162" "ulaABCDEF" ["G7860", "G7859", "G7858", "EG12495", "EG12494", "G7856"] 4419927 4424386 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IEP-COREGULATION"] "TU0-5163" "ulaG" ["G7855"] 4418561 4419675 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-5182" "pdxB-usg-truA-dedA" ["EG10216", "EG10454", "EG11059", "G0-9461"] 2434082 2437884 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-5183" "usg-truA-dedA" ["EG10216", "EG10454", "EG11059"] 2434082 2436890 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION"] "TU0-5184" "flk" ["EG10229"] 2437912 2438945 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-5186" "rsmA-apaGH" ["EG10048", "EG10047", "EG10523"] 50380 52588 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-5201" "pdxA-rsmA-apaGH" ["EG10048", "EG10047", "EG10523", "EG10691"] 50380 53446 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-5201" "pdxA-rsmA-apaGH" ["EG10048", "EG10047", "EG10523", "EG10691"] 50380 53416 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-5202" "apaGH" ["EG10048", "EG10047"] 50380 52034 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-5221" "pdxA-rsmA" ["EG10523", "EG10691"] 51609 53446 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-5221" "pdxA-rsmA" ["EG10523", "EG10691"] 51609 53416 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-52570" "aspX" ["G0-17100"] 4366839 4366951 "-" ["EV-EXP-IDA"] -"TU0-5261" "ccmABCDEFGH" ["EG12052", "EG12053", "EG12054", "EG12055", "EG12169", "EG12057", "EG12058", "EG12059"] 2291358 2297674 "-" [] +"TU0-5261" "ccmABCDEFGH" ["EG12052", "EG12053", "EG12054", "EG12055", "EG12169", "EG12057", "EG12058", "EG12059"] 2291358 2297644 "-" [] "TU0-5321" "fadIJ" ["G7212", "G7213"] 2457015 2460511 "-" [] "TU0-5322" "ydiQRST-fadK" ["EG12357", "G6923", "G6922", "G6921", "G6920"] 1779617 1784677 "+" [] "TU0-5341" "osmF-yehYXW" ["EG12009", "EG12010", "EG12011", "EG12012"] 2215745 2219523 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU0-5402" "malZ" ["EG10565"] 422421 424553 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-5402" "malZ" ["EG10565"] 422495 424553 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-5421" "aes" ["EG11101"] 498945 500051 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-5481" "ynfEFGH-dmsD" ["G6849", "G6848", "G6847", "G6846", "G6845"] 1657962 1665120 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU0-5501" "argG" ["EG10068"] 3318394 3319980 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] +"TU0-5481" "ynfEFGH-dmsD" ["G6849", "G6848", "G6847", "G6846", "G6845"] 1658003 1665120 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU0-5501" "argG" ["EG10068"] 3318562 3319980 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-55017" "ychJ-purU" ["EG11819", "EG12119"] 1287782 1289177 "-" ["EV-EXP-IDA"] "TU0-5522" "yicR-rpmBG-mutM" ["EG10329", "EG10891", "EG10886", "EG11312"] 3810343 3812577 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-5523" "mutM" ["EG10329"] 3810343 3811175 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] @@ -2411,8 +2435,8 @@ "TU0-5601" "yicR-rpmBG" ["EG10891", "EG10886", "EG11312"] 3811209 3812577 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-5621" "arcB" ["EG10062"] 3350689 3353049 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-5661" "mcrBC" ["EG10575", "EG10574"] 4576912 4579337 "-" ["EV-EXP-IMP-POLAR-MUTATION"] -"TU0-5682" "gadEF-mdtEF" ["G0-16680", "EG12241", "EG12240", "EG11544"] 3658146 3663527 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-5741" "pspG" ["G0-16700", "EG11933"] 4262729 4263249 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] +"TU0-5682" "gadEF-mdtEF" ["G0-16680", "EG12241", "EG12240", "EG11544"] 3658345 3663527 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-5741" "pspG" ["G0-16700", "EG11933"] 4262816 4263249 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-5761" "gadY" ["G0-8914"] 3664864 3664969 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-COMP-AINF-SINGLE-DIRECTON", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-5781" "mutY-yggX" ["G7532", "EG10627"] 3102911 3104368 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-5782" "mutY-yggX-mltC" ["G7533", "G7532", "EG10627"] 3102911 3105512 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] @@ -2421,19 +2445,19 @@ "TU0-5901" "glnAZ" ["G0-17117", "EG10383"] 4055990 4058222 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-5903" "glnAZ" ["G0-17117", "EG10383"] 4055990 4058107 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-5961" "cytR" ["EG10200"] 4123431 4124509 "-" ["EV-COMP-AINF"] -"TU0-5964" "serC" ["EG10946"] 957461 958741 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-5964" "serC" ["EG10946"] 957595 958741 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-5981" "ugpBAECQ" ["EG11050", "EG11048", "EG11049", "EG11046", "EG11047"] 3587370 3592378 "-" ["EV-IC"] "TU0-5982" "ugpBAECQ" ["EG11050", "EG11048", "EG11049", "EG11046", "EG11047"] 3587370 3592426 "-" ["EV-IC"] "TU0-6" "cysG" ["EG10188"] 3497793 3499201 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-6003" "yidQ" ["EG11712"] 3867290 3868060 "+" [] +"TU0-6003" "yidQ" ["EG11712"] 3867544 3868060 "+" [] "TU0-6021" "aspA-dcuA" ["EG11225", "EG10095"] 4365472 4368432 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-6042" "entS" ["EG11104"] 622214 623550 "+" [] +"TU0-6042" "entS" ["EG11104"] 622258 623550 "+" [] "TU0-6043" "entS" ["EG11104"] 622253 623550 "+" [] -"TU0-6184" "gcvB" ["G0-8867"] 2942653 2942901 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-6184" "gcvB" ["G0-8867"] 2942696 2942901 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-6223" "metY-yhbC-nusA-infB-rbfA-truB-rpsO-pnp" ["EG10743", "EG10914", "EG11177", "EG11178", "EG10505", "EG10665", "EG11179", "EG30061"] 3308999 3318297 "-" ["EV-EXP-IMP-POLAR-MUTATION"] -"TU0-6241" "tisB" ["G0-9962"] 3853309 3853689 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-6241" "tisB" ["G0-9962"] 3853337 3853689 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-6281" "btuB-murI" ["EG11204", "EG10126"] 4163399 4166285 "+" ["EV-COMP-AINF"] -"TU0-6301" "dinG-ybiB" ["EG11580", "EG11357"] 833045 836210 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IEP"] +"TU0-6301" "dinG-ybiB" ["EG11580", "EG11357"] 833073 836210 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IEP"] "TU0-6361" "dolP" ["G7644"] 3296349 3296984 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-6362" "ytfJ" ["G7871"] 4438708 4439286 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-6363" "ybhK" ["G6402"] 815739 816647 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] @@ -2471,7 +2495,7 @@ "TU0-6512" "rplKAJL-rpoBC" ["EG10895", "EG10894", "EG10873", "EG10871", "EG10864", "EG10872"] 4178354 4189613 "+" ["EV-EXP-IMP-POLAR-MUTATION"] "TU0-6513" "sbcB" ["EG10926"] 2082728 2084183 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-6514" "serB-radA" ["EG11296", "EG10945"] 4624856 4627294 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IEP-COREGULATION"] -"TU0-6515" "ung" ["EG11058"] 2716657 2717443 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-6515" "ung" ["EG11058"] 2716738 2717443 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-6550" "gltX" ["EG10407"] 2519208 2520776 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-6551" "gltX" ["EG10407"] 2519208 2520784 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-6552" "lysC" ["EG10550"] 4231884 4233539 "-" ["EV-COMP-AINF"] @@ -2481,14 +2505,14 @@ "TU0-6557" "pyrG-eno" ["EG10258", "EG10810"] 2906643 2909717 "-" ["EV-COMP-AINF"] "TU0-6559" "uvrC" ["EG11063"] 1992874 1994879 "-" [] "TU0-6562" "proS" ["EG10770"] 217020 218837 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-6563" "ssb" ["EG10976"] 4273938 4274661 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-6564" "ssb" ["EG10976"] 4273938 4274661 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-6563" "ssb" ["EG10976"] 4274080 4274661 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-6564" "ssb" ["EG10976"] 4274092 4274661 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-6569" "ansB" ["EG10046"] 3099654 3100790 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-6581" "kbaZ-agaVWA" ["EG12766", "G7633", "G7632", "G7631"] 3278790 3281625 "+" ["EV-EXP-IEP-COREGULATION"] +"TU0-6581" "kbaZ-agaVWA" ["EG12766", "G7633", "G7632", "G7631"] 3278866 3281625 "+" ["EV-EXP-IEP-COREGULATION"] "TU0-6582" "agaR" ["G7630"] 3277856 3278703 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] -"TU0-6583" "agaSYBCDI" ["G7636", "G7635", "EG12770", "EG12769", "EG12768", "G7634"] 3281614 3287025 "+" ["EV-EXP-IEP-COREGULATION"] +"TU0-6583" "agaSYBCDI" ["G7636", "G7635", "EG12770", "EG12769", "EG12768", "G7634"] 3281889 3287025 "+" ["EV-EXP-IEP-COREGULATION"] "TU0-6621" "ppiD" ["G6242"] 461838 463786 "+" ["EV-COMP-AINF"] -"TU0-6622" "ppiD" ["G6242"] 461654 463786 "+" ["EV-COMP-AINF"] +"TU0-6622" "ppiD" ["G6242"] 461819 463786 "+" ["EV-COMP-AINF"] "TU0-6623" "tesA-ybbO" ["G6269", "EG11542"] 518340 519949 "-" ["EV-COMP-AINF"] "TU0-6625" "speB" ["EG10960"] 3082877 3083946 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-6626" "pheMST-ihfA" ["EG10440", "EG11272", "EG10710", "EG10709"] 1795216 1799301 "-" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] @@ -2514,10 +2538,10 @@ "TU0-6685" "rnhA" ["EG10860"] 235535 236041 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-6686" "uvrYC" ["EG11063", "EG11140"] 1992874 1995406 "-" [] "TU0-6687" "valS" ["EG11067"] 4480932 4483919 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-6702" "sdhDAB" ["EG10932", "EG10931", "EG10934"] 755391 758450 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-6702" "sdhDAB" ["EG10932", "EG10931", "EG10934"] 755404 758450 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-6821" "cstA" ["EG10167"] 629873 632091 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-6822" "cstA" ["EG10167"] 629864 632091 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-6823" "cstA" ["EG10167"] 629765 632091 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-6823" "cstA" ["EG10167"] 629855 632091 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-6843" "nanCM" ["G7920", "G7921"] 4537659 4539928 "-" ["EV-COMP-AINF"] "TU0-6861" "ilvIH" ["EG10499", "EG10500"] 85453 87848 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-6881" "ilvIH" ["EG10499", "EG10500"] 85420 87848 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] @@ -2531,7 +2555,7 @@ "TU0-6981" "cspI" ["G6825"] 1638455 1638812 "-" [] "TU0-6982" "cspB" ["EG12203"] 1641339 1641715 "-" [] "TU0-6983" "cspG" ["G6511"] 1051461 1051673 "+" [] -"TU0-7" "tsr" ["EG11034"] 4591403 4593312 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] +"TU0-7" "tsr" ["EG11034"] 4591412 4593312 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-7001" "gcd" ["EG10369"] 138801 141279 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-7002" "rpoBC" ["EG10895", "EG10894"] 4181063 4189613 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-7021" "hcp-hcr" ["G6456", "G6457"] 911182 913845 "-" ["EV-EXP-IMP-POLAR-MUTATION"] @@ -2539,16 +2563,16 @@ "TU0-7043" "uvrD" ["EG11064"] 3997971 4000177 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-7044" "uvrB" ["EG11062"] 813152 815547 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-7061" "yzfA" ["EG11213"] 4447976 4448294 "-" [] -"TU0-7081" "galP" ["EG12148"] 3088193 3089678 "+" [] +"TU0-7081" "galP" ["EG12148"] 3088255 3089678 "+" [] "TU0-7141" "bdm-sra" ["EG11508", "G6776"] 1555826 1556340 "-" ["EV-EXP-IMP-POLAR-MUTATION"] "TU0-7161" "rirA-rfaQGPSBIJYZ-waaU" ["G0-16662", "EG11423", "EG11426", "EG11425", "EG11353", "EG11352", "EG11351", "EG11350", "EG11340", "EG11339", "EG11341"] 3798239 3808238 "-" [] "TU0-7162" "rfaQGPSBIJYZ-waaU" ["EG11423", "EG11426", "EG11425", "EG11353", "EG11352", "EG11351", "EG11350", "EG11340", "EG11339", "EG11341"] 3798239 3808180 "-" [] "TU0-7163" "waaA" ["EG10520"] 3808516 3809817 "+" [] "TU0-7164" "waaA" ["EG10520"] 3808256 3809817 "+" [] "TU0-7181" "istR-2" ["G0-10201"] 3853118 3853257 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-7182" "istR-1" ["G0-10201"] 3853118 3853257 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-7201" "hcaR" ["G7331"] 2668006 2668964 "-" [] -"TU0-7202" "hcaEFCBD" ["G7336", "G7335", "G7334", "M015", "M009"] 2668940 2673249 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-7182" "istR-1" ["G0-10201"] 3853118 3853192 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-7201" "hcaR-iroK" ["G0-10716", "G7331"] 2668006 2668964 "-" [] +"TU0-7202" "hcaEFCBD" ["G7336", "G7335", "G7334", "M015", "M009"] 2668982 2673249 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-7221" "prpR" ["G6195"] 346857 348471 "-" [] "TU0-7262" "moaBCDE" ["EG11598", "EG11597", "EG11666", "EG11596"] 817977 819747 "+" [] "TU0-7281" "yrdD-rimN-aroE-yrdB" ["G7697", "EG10077", "G7698", "G7699"] 3429766 3431962 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IMP-POLAR-MUTATION"] @@ -2558,49 +2582,49 @@ "TU0-7341" "rpiA" ["EG11443"] 3058644 3059353 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-7342" "tktB" ["EG12100"] 2579308 2581639 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-7361" "ves" ["G6938"] 1824362 1824984 "-" [] -"TU0-7401" "agp" ["EG10033"] 1065326 1066857 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-7401" "agp" ["EG10033"] 1065559 1066857 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-7421" "glk" ["EG12957"] 2508424 2509461 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-7441" "galU" ["EG11319"] 1291405 1292365 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-7461" "amyA" ["EG11387"] 2006115 2007674 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-7501" "bglX" ["EG12013"] 2219660 2222120 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-7521" "sthA" ["EG11428"] 4159390 4160802 "-" [] -"TU0-7541" "evgAS" ["EG11610", "EG11609"] 2483521 2487967 "+" ["EV-IC"] -"TU0-7561" "evgAS" ["EG11610", "EG11609"] 2483521 2487967 "+" ["EV-IC"] +"TU0-7541" "evgLAS" ["G0-17027", "EG11610", "EG11609"] 2483631 2487967 "+" ["EV-IC"] +"TU0-7561" "evgLAS" ["G0-17027", "EG11610", "EG11609"] 2483641 2487967 "+" ["EV-IC"] "TU0-7581" "polB" ["EG10747"] 63429 65803 "-" [] -"TU0-7601" "allA" ["G6275"] 532337 532933 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-7601" "allA" ["G6275"] 532390 532933 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-7602" "allS" ["G6274"] 531295 532300 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-7603" "gcl-hyi-glxR-ybbVW-allB-ybbY-glxK" ["G6283", "G6282", "G6281", "G6280", "G6278", "G6277", "EG11583"] 533887 543033 "+" ["EV-EXP-IEP-COREGULATION"] +"TU0-7603" "gcl-hyi-glxR-ybbVW-allB-ybbY-glxK" ["G6283", "G6282", "G6281", "G6280", "G6278", "G6277", "EG11583"] 533907 543033 "+" ["EV-EXP-IEP-COREGULATION"] "TU0-7622" "allDC-ylbA" ["G6284", "G6285", "G6286"] 543261 546411 "-" ["EV-EXP-IEP-COREGULATION"] -"TU0-7662" "yhhY" ["G7758"] 3581034 3581626 "+" ["EV-COMP-AINF"] +"TU0-7662" "yhhY" ["G7758"] 3581111 3581626 "+" ["EV-COMP-AINF"] "TU0-7681" "nohA-stfQ-tfaQ" ["G6820", "G6821", "EG11634"] 1634310 1636603 "-" ["EV-COMP-AINF"] "TU0-7701" "fhuF" ["G7949"] 4604875 4605694 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-7722" "otsBA" ["EG11752", "EG11751"] 1980096 1982442 "-" ["EV-EXP-IMP-POLAR-MUTATION"] "TU0-7741" "ydeP" ["G6791"] 1584207 1586664 "-" [] -"TU0-7743" "ydeO" ["G6789"] 1582926 1583717 "-" ["EV-EXP-IEP-COREGULATION"] +"TU0-7743" "ydeO" ["G6789"] 1582926 1583687 "-" ["EV-EXP-IEP-COREGULATION"] "TU0-7744" "yegRZ" ["G7120", "G7122"] 2167602 2168349 "-" ["EV-EXP-IEP-COREGULATION"] "TU0-7745" "frc" ["G7237"] 2492004 2493439 "-" [] "TU0-7746" "yfdX" ["G7234", "G7235", "G7236", "G7237", "G7238"] 2488023 2494433 "-" ["EV-EXP-IEP-COREGULATION"] -"TU0-7781" "yrbL" ["G7667"] 3348393 3349084 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-7781" "yrbL" ["G7667"] 3348421 3349084 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-7783" "borD" ["G6312"] 578600 578921 "-" [] -"TU0-7784" "rstAB" ["EG11233", "G6864"] 1682094 1684183 "+" [] -"TU0-7802" "slyB" ["G6881"] 1719744 1720343 "+" [] -"TU0-7803" "slyB" ["G6881"] 1719744 1720343 "+" [] +"TU0-7784" "rstAB" ["EG11233", "G6864"] 1682138 1684183 "+" [] +"TU0-7802" "slyB" ["G6881"] 1719777 1720343 "+" [] +"TU0-7803" "slyB" ["G6881"] 1719748 1720343 "+" [] "TU0-7804" "rob" ["EG11366"] 4634441 4635353 "-" ["EV-COMP-AINF-SINGLE-DIRECTON", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-7805" "nagA" ["EG10632"] 701603 703175 "-" [] "TU0-7806" "hemL" ["EG10432"] 173602 174921 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] -"TU0-7821" "pagP" ["EG12180"] 656494 657117 "+" [] +"TU0-7821" "pagP" ["EG12180"] 656526 657117 "+" [] "TU0-7822" "ybjG" ["G6439"] 882792 883508 "-" [] "TU0-7823" "ompT" ["EG10673"] 584680 585665 "-" [] "TU0-7842" "rpsT" ["EG10919"] 20771 21210 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-7844" "rpsT" ["EG10919"] 20771 21120 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-7861" "lsrACDBFG-tam" ["G6806", "G6805", "G6804", "G6803", "G6802", "G6801", "G6800"] 1601388 1608104 "+" ["EV-EXP-IEP-COREGULATION", "EV-COMP-HINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-7881" "mdtABCD-baeSR" ["EG11618", "EG11617", "EG12136", "G7115", "G7114", "G7113"] 2153850 2164998 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IEP-COREGULATION"] +"TU0-7861" "lsrACDBFG-tam" ["G6806", "G6805", "G6804", "G6803", "G6802", "G6801", "G6800"] 1601460 1608104 "+" ["EV-EXP-IEP-COREGULATION", "EV-COMP-HINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-7881" "mdtABCD-baeSR" ["EG11618", "EG11617", "EG12136", "G7115", "G7114", "G7113"] 2153979 2164998 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IEP-COREGULATION"] "TU0-7901" "mglAC" ["EG10594", "EG10592"] 2236743 2239391 "-" ["EV-EXP-IEP-COREGULATION"] "TU0-7962" "dhaR" ["G6628"] 1251003 1252985 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-7981" "dhaKLM" ["EG12399", "G6626", "G6627"] 1247696 1250944 "-" ["EV-EXP-IEP-COREGULATION"] "TU0-8001" "glnQ" ["EG10389"] 845741 846631 "-" [] -"TU0-8021" "acrD" ["EG10014"] 2587443 2590708 "+" [] -"TU0-8044" "gatR_2" ["EG12162"] 2169693 2171757 "-" [] +"TU0-8021" "acrD" ["EG10014"] 2587475 2590708 "+" [] +"TU0-8044" "gatR_2" ["EG12162"] 2169693 2171727 "-" [] "TU0-8061" "tpiA" ["EG11015"] 4110740 4111524 "-" [] "TU0-8081" "pgk-fbaA" ["EG10282", "EG10703"] 3070165 3072857 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-8082" "epd-pgk-fbaA" ["EG10282", "EG10703", "EG10368"] 3070165 3073823 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] @@ -2621,7 +2645,7 @@ "TU0-8201" "ybjP" ["G6450"] 903952 904523 "-" [] "TU0-8202" "yggE" ["EG11244"] 3067340 3068126 "-" [] "TU0-8203" "yggE" ["EG11244"] 3067340 3068185 "-" [] -"TU0-8221" "metE" ["EG10584"] 4012822 4015314 "+" [] +"TU0-8221" "metE" ["EG10584"] 4012884 4015314 "+" [] "TU0-8223" "metR" ["EG10591"] 4011863 4012855 "-" [] "TU0-8224" "metR" ["EG10591"] 4011863 4012837 "-" [] "TU0-8241" "yebC-ruvC" ["EG10925", "EG11137"] 1946815 1948185 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] @@ -2637,7 +2661,7 @@ "TU0-8266" "hokE" ["G0-9582"] 607731 607988 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-8267" "cho" ["G6937"] 1823492 1824402 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-8281" "rimJ" ["EG10851"] 1125522 1126146 "+" [] -"TU0-8301" "ackA-pta" ["EG20173", "EG10027"] 2413470 2416891 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU0-8301" "ackA-pta" ["EG20173", "EG10027"] 2413468 2416891 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-8302" "pta" ["EG20173"] 2414486 2416891 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-8321" "dut-slmA" ["EG11191", "EG10251"] 3813852 3815090 "+" ["EV-COMP-HINF", "EV-EXP-IMP-POLAR-MUTATION"] "TU0-8323" "lolB-ispE-prs" ["EG10774", "EG11294", "EG11293"] 1260895 1263556 "-" ["EV-EXP-IEP"] @@ -2656,7 +2680,7 @@ "TU0-8338" "ygcG" ["G7444"] 2905711 2906583 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8339" "queE" ["G7443"] 2904747 2905418 "-" [] "TU0-8340" "fliE" ["EG11346"] 2012700 2013093 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-COMP-AINF-SINGLE-DIRECTON"] -"TU0-8341" "rtcR" ["EG12356"] 3558238 3559866 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-8341" "rtcR" ["EG12356"] 3558268 3559866 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-8343" "scpA-argK-scpBC" ["G7517", "G7516", "EG11445", "EG11444"] 3060850 3066280 "+" ["EV-AS-NAS"] "TU0-8344" "hypABCDE-fhlA" ["EG10301", "EG10487", "EG10486", "EG10485", "EG10484", "EG10483"] 2850627 2856416 "+" ["EV-AS-NAS", "EV-EXP-IEP"] "TU0-8345" "hypBCDE-fhlA" ["EG10301", "EG10487", "EG10486", "EG10485", "EG10484"] 2850839 2856416 "+" ["EV-EXP-IEP", "EV-AS-NAS"] @@ -2686,18 +2710,18 @@ "TU0-8455" "ybgIJKL-nei" ["G6382", "G6383", "G6381", "G6380", "G6379"] 742798 746726 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-8456" "ydgK-rsxABCDGE-nth" ["EG10662", "G6876", "G6875", "G6874", "G6873", "G6872", "G6871", "G6870"] 1705207 1712158 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-8458" "rsxABCDGE-nth" ["EG10662", "G6876", "G6875", "G6874", "G6873", "G6872", "G6871"] 1705755 1712158 "+" [] -"TU0-8464" "rplL" ["EG10873"] 4180530 4180925 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-8464" "rplL" ["EG10873"] 4180560 4180925 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-8469" "fbaB" ["G7129"] 2177512 2178667 "-" ["EV-COMP-AINF"] "TU0-8471" "pgaABCD" ["G6528", "G6529", "G6530", "G6531"] 1086106 1092523 "-" ["EV-IC"] "TU0-8472" "argA" ["EG10063"] 2949156 2950573 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] -"TU0-8473" "tppB" ["G6877"] 1712625 1714271 "+" [] +"TU0-8473" "tppB" ["G6877"] 1712671 1714271 "+" [] "TU0-8474" "rpsO" ["EG10914"] 3311372 3311786 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-8475" "yciZT" ["G0-10591", "G6638"] 1343597 1344638 "-" ["EV-EXP-IEP-COREGULATION"] "TU0-8476" "metY" ["EG30061"] 3318031 3318375 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-8477" "cysS" ["EG10196"] 554577 555996 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8478" "dosCP" ["G6783", "G6784"] 1563276 1567140 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IEP-COREGULATION"] "TU0-8479" "appY" ["EG10050"] 583567 584430 "+" ["EV-COMP-AINF"] -"TU0-8480" "erpA" ["EG12332"] 176533 176954 "+" [] +"TU0-8480" "erpA" ["EG12332"] 176561 176954 "+" [] "TU0-8481" "nfuA" ["G7748"] 3545596 3546199 "+" [] "TU0-8482" "ydiU" ["G6924"] 1789808 1791254 "-" [] "TU0-8484" "napFDAGHBC" ["EG12060", "EG12061", "EG12062", "EG12064", "EG12067", "EG12143", "EG12068"] 2297657 2303695 "-" [] @@ -2728,7 +2752,7 @@ "TU0-8510" "tusA" ["EG12216"] 3608751 3608996 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8511" "slyA" ["G6882"] 1720390 1720824 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8512" "slyX" ["EG11664"] 3477640 3477858 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] -"TU0-8513" "ybjX" ["G6460"] 918128 919120 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] +"TU0-8513" "ybjX" ["G6460"] 918128 919103 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8514" "sraA" ["G0-8861"] 458728 458784 "-" ["EV-COMP-AINF-SINGLE-DIRECTON", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-8515" "micA" ["G0-8866"] 2814802 2814874 "+" ["EV-COMP-AINF-SINGLE-DIRECTON", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-8516" "sraG" ["G0-8870"] 3311183 3311398 "+" ["EV-COMP-AINF-SINGLE-DIRECTON", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] @@ -2756,7 +2780,7 @@ "TU0-8541" "yafC" ["EG11649"] 229967 230881 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8542" "yafF" ["G0-10431"] 239190 239378 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8543" "yafS" ["G6100"] 234816 235538 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] -"TU0-8544" "yafU" ["G6102"] 238746 239114 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] +"TU0-8544" "yafU" ["G6102"] 238746 239084 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8545" "yafV" ["G6103"] 239419 240216 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8546" "yagJ" ["G6147"] 291500 292231 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8547" "yagU" ["G6158"] 302991 303605 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] @@ -2865,7 +2889,7 @@ "TU0-8657" "yqhC" ["G7563"] 3154262 3155218 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8658" "nfeR" ["G7594"] 3216753 3217402 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8659" "yraL" ["G7641"] 3292475 3293335 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] -"TU0-8660" "yrdA" ["G7696"] 3429206 3429790 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] +"TU0-8660" "yrdA" ["G7696"] 3429236 3429790 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8661" "ysgA" ["G7804"] 4015354 4016343 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8662" "ytfA" ["G7863"] 4427694 4428095 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8663" "ytfB" ["G7864"] 4428079 4428819 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] @@ -2906,7 +2930,7 @@ "TU0-8702" "ydcO" ["G6744"] 1504905 1506080 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8703" "yddH" ["G6769"] 1533282 1533851 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8704" "eamA" ["EG11639"] 1620238 1621137 "-" ["EV-COMP-AINF-SINGLE-DIRECTON", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-8705" "ydeE" ["EG11640"] 1621332 1622519 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] +"TU0-8705" "ydeE" ["EG11640"] 1621322 1622519 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8706" "ydeJ" ["EG11645"] 1624688 1625291 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8707" "ydgC" ["G6863"] 1681695 1682030 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8708" "ydgJ" ["G6868"] 1703268 1704308 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] @@ -2960,7 +2984,7 @@ "TU0-8758" "ygiZ" ["G7577"] 3171879 3172323 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8759" "aaeR" ["G7688"] 3389496 3390449 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8760" "abgR" ["G6671"] 1404741 1405693 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] -"TU0-8761" "dcuD" ["G7679"] 3374539 3376236 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] +"TU0-8761" "dcuD" ["G7679"] 3374583 3376236 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8762" "omrB" ["G0-8882"] 2976304 2976385 "-" ["EV-COMP-AINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-8763" "omrA" ["G0-8868"] 2976102 2976189 "-" ["EV-COMP-AINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-8764" "acpH" ["EG11095"] 424337 424918 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] @@ -2988,7 +3012,7 @@ "TU0-8792" "envR" ["EG11741"] 3412803 3413465 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8793" "fadE" ["G6105"] 240859 243406 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8794" "fadR" ["EG10281"] 1234916 1235698 "+" ["EV-COMP-AINF-SINGLE-DIRECTON", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-8795" "feaB" ["G7961"] 1447428 1449063 "+" ["EV-COMP-AINF-SINGLE-DIRECTON", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-8795" "feaB" ["G7961"] 1447492 1449063 "+" ["EV-COMP-AINF-SINGLE-DIRECTON", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-8799" "fimZ" ["EG11103"] 563848 564480 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8800" "fsaA" ["G6428"] 863642 864304 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8802" "ggt" ["EG10374"] 3585081 3586823 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] @@ -3002,7 +3026,7 @@ "TU0-8810" "hokA" ["G0-9613"] 3720448 3720600 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8811" "iap" ["EG10488"] 2876581 2877618 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8812" "ompX" ["EG12117"] 850419 851009 "+" ["EV-COMP-AINF-SINGLE-DIRECTON", "EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU0-8813" "ompW" ["EG11124"] 1313909 1314658 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] +"TU0-8813" "ompW" ["EG11124"] 1313991 1314658 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8814" "nudG" ["G6954"] 1841490 1841897 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8815" "nudE" ["G7740"] 3525589 3526149 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU0-8816" "norR" ["EG12108"] 2830775 2832289 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] @@ -3048,40 +3072,40 @@ "TU0-8867" "yjjB-dnaTC-yjjA" ["EG11214", "EG10237", "EG10244", "EG11215"] 4599620 4602177 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IEP-COREGULATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-8868" "dnaTC" ["EG10237", "EG10244"] 4600139 4601615 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IEP-COREGULATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-8869" "yjjB-dnaTC" ["EG10237", "EG10244", "EG11215"] 4600139 4602177 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IEP-COREGULATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-8872" "adrA" ["EG11257"] 403621 404818 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU0-8873" "allR" ["G6276"] 532981 533826 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-8872" "adrA" ["EG11257"] 403687 404818 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-8873" "allR" ["G6276"] 533011 533826 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-8874" "pepD" ["EG10695"] 254259 255737 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-9" "yehF" ["EG11992"] 2196445 2197298 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-901" "lpxL" ["EG10464"] 1115662 1116709 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-921" "yceA" ["EG11116"] 1116772 1117859 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU0-93010" "ytfK" ["G7872"] 4439413 4439793 "+" ["EV-IC"] -"TU0-941" "mraZW-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC" ["EG10265", "EG10347", "EG10339", "EG10342", "EG10214", "EG10619", "EG10623", "EG10344", "EG10620", "EG10604", "EG10622", "EG10621", "EG10341", "EG11086", "EG11085", "EG11084"] 89596 107474 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU0-941" "mraZW-ftsLIO-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC" ["G0-17085", "EG10265", "EG10347", "EG10339", "EG10342", "EG10214", "EG10619", "EG10623", "EG10344", "EG10620", "EG10604", "EG10622", "EG10621", "EG10341", "EG11086", "EG11085", "EG11084"] 89596 107474 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU0-961" "sohB" ["EG10956"] 1329284 1330381 "+" [] "TU0-962" "sohB" ["EG10956"] 1329301 1330381 "+" [] -"TU0-963" "mpl" ["EG12440"] 4455690 4457158 "+" [] +"TU0-963" "mpl" ["EG12440"] 4455728 4457158 "+" [] "TU0-964" "mpl" ["EG12440"] 4455760 4457158 "+" [] "TU0-965" "menA-rraA" ["EG11879", "EG11880"] 4118845 4120406 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00001" "aceBAK" ["EG10023", "EG10022", "EG10026"] 4215235 4220332 "+" ["EV-EXP-IMP-POLAR-MUTATION"] +"TU00001" "aceBAK" ["EG10023", "EG10022", "EG10026"] 4215402 4220332 "+" ["EV-EXP-IMP-POLAR-MUTATION"] "TU00002" "alkA" ["EG11222"] 2146692 2147559 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] -"TU00003" "araC" ["EG10054"] 70118 71265 "+" [] -"TU00004" "argCBH" ["EG10065", "EG10064", "EG11223"] 4154881 4158223 "+" [] +"TU00003" "araC" ["EG10054"] 70223 71265 "+" [] +"TU00004" "argCBH" ["EG10065", "EG10064", "EG11223"] 4154885 4158223 "+" [] "TU00005" "argF" ["EG10067"] 289301 290340 "-" [] "TU00006" "argI" ["EG10069"] 4477307 4478344 "-" [] -"TU00007" "argR" ["EG10070"] 3384649 3385173 "+" [] +"TU00007" "argR" ["EG10070"] 3384677 3385173 "+" [] "TU00008" "aroF-tyrA" ["EG11039", "EG10078"] 2738912 2741201 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00009" "aroG" ["EG10079"] 785553 786821 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00010" "aroH" ["EG10080"] 1788280 1789510 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00011" "aroL-yaiA-aroM" ["EG10082", "EG11093", "EG10083"] 406235 408105 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00009" "aroG" ["EG10079"] 785591 786821 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00010" "aroH" ["EG10080"] 1788318 1789510 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00011" "aroL-yaiA-aroM" ["EG10082", "EG11093", "EG10083"] 406280 408105 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00012" "aroP" ["EG10084"] 120144 121671 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-COMP-AINF-SINGLE-DIRECTON"] "TU00013" "bioA" ["EG10117"] 807968 809292 "-" [] "TU00014" "cirA" ["EG10155"] 2244778 2246942 "-" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00015" "cirA" ["EG10155"] 2244778 2246929 "-" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00016" "cyaA" ["EG10170"] 3990997 3993699 "+" [] -"TU00017" "deoCABD" ["EG10221", "EG10219", "EG10220", "EG10222"] 4616071 4621659 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00018" "deoCABD" ["EG10221", "EG10219", "EG10220", "EG10222"] 4616391 4621659 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00019" "dmsABC" ["EG10232", "EG10233", "EG10234"] 940781 944896 "+" [] -"TU00020" "fhuACDB" ["EG10302", "EG10304", "EG10305", "EG10303"] 167439 173444 "+" [] -"TU00021" "dusB-fis" ["EG11311", "EG10317"] 3409993 3411626 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00016" "cyaA" ["EG10170"] 3990999 3993699 "+" [] +"TU00017" "deoCABD" ["EG10221", "EG10219", "EG10220", "EG10222"] 4616679 4621659 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00018" "deoCABD" ["EG10221", "EG10219", "EG10220", "EG10222"] 4617278 4621659 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00019" "dmsABC" ["EG10232", "EG10233", "EG10234"] 940823 944896 "+" [] +"TU00020" "fhuACDB" ["EG10302", "EG10304", "EG10305", "EG10303"] 167442 173444 "+" [] +"TU00021" "dusB-fis" ["EG11311", "EG10317"] 3410246 3411626 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00022" "fnr" ["EG10325"] 1398774 1399552 "-" [] "TU00023" "frdABCD" ["EG10333", "EG10332", "EG10331", "EG10330"] 4378966 4382412 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00024" "galS" ["EG10365"] 2240628 2241710 "-" [] @@ -3090,133 +3114,133 @@ "TU00027" "glnAZLG" ["G0-17117", "EG10385", "EG10387", "EG10383"] 4053869 4058222 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IEP-COREGULATION"] "TU00028" "glnLG" ["EG10385", "EG10387"] 4053869 4056371 "-" ["EV-EXP-IEP-COREGULATION"] "TU00029" "glnAZLG" ["G0-17117", "EG10385", "EG10387", "EG10383"] 4053869 4058107 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IEP-COREGULATION"] -"TU00030" "glpABC" ["EG10391", "EG10392", "EG10393"] 2352492 2356752 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00031" "glpD" ["EG10394"] 3561907 3563518 "+" [] +"TU00030" "glpABC" ["EG10391", "EG10392", "EG10393"] 2352583 2356752 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00031" "glpD" ["EG10394"] 3561971 3563518 "+" [] "TU00032" "ivbL-ilvBN" ["EG10502", "EG10494", "EG11275"] 3850746 3853023 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IEP-COREGULATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00033" "ilvY" ["EG10503"] 3956883 3957867 "-" [] -"TU00034" "katG" ["EG10511"] 4133699 4136015 "+" [] +"TU00034" "katG" ["EG10511"] 4133812 4136015 "+" [] "TU00035" "kdpFABC" ["G0-10439", "EG10515", "EG10514", "EG10513"] 724407 728849 "-" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IMP-POLAR-MUTATION", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU00036" "lacZYA" ["EG10524", "EG10526", "EG10527"] 361140 366343 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00037" "lexA-dinF" ["EG10533", "EG11491"] 4257078 4259121 "+" ["EV-EXP-IMP-POLAR-MUTATION"] +"TU00037" "lexA-dinF" ["EG10533", "EG11491"] 4257087 4259121 "+" ["EV-EXP-IMP-POLAR-MUTATION"] "TU00038" "malEFGH" ["G0-17082", "EG10556", "EG10555", "EG10554"] 4242531 4246464 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IEP-COREGULATION"] "TU00039" "malPQ" ["EG10561", "EG10560"] 3547986 3552510 "-" [] "TU00040" "melR" ["EG11230"] 4340720 4341650 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00041" "metA" ["EG10581"] 4214233 4215209 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00042" "metH" ["EG10587"] 4223659 4227511 "+" [] +"TU00042" "metH" ["EG10587"] 4223783 4227511 "+" [] "TU00043" "nagBACD" ["EG10634", "EG10636", "EG10632", "EG10633"] 699574 703708 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IMP-POLAR-MUTATION"] -"TU00044" "narGHJI" ["EG10638", "EG10639", "EG10641", "EG10640"] 1279599 1286579 "+" [] -"TU00045" "narK" ["G0-17088", "EG10642"] 1277718 1279520 "+" [] -"TU00046" "nirBDC-cysG" ["EG10653", "EG10655", "EG10654", "EG10188"] 3493690 3499201 "+" [] -"TU00047" "nrdAB-yfaE" ["EG12360", "EG10660", "EG10661"] 2344432 2348768 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU00044" "narGHJI" ["EG10638", "EG10639", "EG10641", "EG10640"] 1279807 1286579 "+" [] +"TU00045" "narK" ["G0-17088", "EG10642"] 1277932 1279520 "+" [] +"TU00046" "nirBDC-cysG" ["EG10653", "EG10655", "EG10654", "EG10188"] 3493987 3499201 "+" [] +"TU00047" "nrdAB-yfaE" ["EG12360", "EG10660", "EG10661"] 2344755 2348768 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU00048" "ompA" ["EG10669"] 1019013 1020191 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00049" "ompC" ["EG10670"] 2311610 2312830 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00050" "ompF" ["EG10671"] 985831 987092 "-" [] "TU00051" "oxyR" ["EG10681"] 4158457 4159407 "+" [] -"TU00052" "phoA-psiF" ["EG10727", "EG11401"] 401676 403601 "+" [] -"TU00053" "phoBR" ["EG10728", "EG10733"] 417070 419245 "+" [] +"TU00052" "phoA-psiF" ["EG10727", "EG11401"] 401707 403601 "+" [] +"TU00053" "phoBR" ["EG10728", "EG10733"] 417101 419245 "+" [] "TU00054" "hflD-purB" ["EG11314", "EG11345"] 1190616 1192686 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION"] "TU00055" "purC" ["EG10791"] 2596905 2597781 "-" [] "TU00056" "purHD" ["EG10792", "EG10795"] 4204642 4207627 "-" [] "TU00057" "purL" ["EG10797"] 2691656 2695589 "-" [] -"TU00058" "purMN" ["EG10798", "EG10799"] 2620960 2622872 "+" [] -"TU00059" "purR" ["EG10800"] 1737640 1738869 "+" [] +"TU00058" "purMN" ["EG10798", "EG10799"] 2621153 2622872 "+" [] +"TU00059" "purR" ["EG10800"] 1737689 1738869 "+" [] "TU00060" "pyrC" ["EG10806"] 1121561 1122643 "-" [] -"TU00061" "pyrD" ["EG10807"] 1004673 1005778 "+" [] +"TU00061" "pyrD" ["EG10807"] 1004732 1005778 "+" [] "TU00062" "recA" ["EG10823"] 2822670 2823819 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00063" "rhaSR" ["EG10843", "EG10842"] 4097599 4099494 "+" ["EV-EXP-IEP-COREGULATION"] -"TU00064" "sodA" ["EG10953"] 4100659 4101522 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00065" "ssb" ["EG10976"] 4273938 4274661 "+" [] +"TU00063" "rhaSR" ["EG10843", "EG10842"] 4097711 4099494 "+" ["EV-EXP-IEP-COREGULATION"] +"TU00064" "sodA" ["EG10953"] 4100759 4101522 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00065" "ssb" ["EG10976"] 4274011 4274661 "+" [] "TU00066" "sulA" ["EG10984"] 1020410 1020947 "-" [] "TU00067" "trpLEDCBA" ["EG11024", "EG11025", "EG11026", "EG11027", "EG11028", "EG11274"] 1316383 1323108 "-" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00068" "tyrR" ["EG11042"] 1386596 1388301 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00068" "tyrR" ["EG11042"] 1386692 1388301 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00069" "uvrA" ["EG11061"] 4271007 4273936 "-" [] "TU00070" "uvrB" ["EG11062"] 813462 815547 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00071" "uvrD" ["EG11064"] 3997907 4000177 "+" [] "TU00072" "ada-alkB" ["EG10037", "EG10029"] 2308691 2310427 "-" ["EV-EXP-IMP-POLAR-MUTATION"] "TU00073" "alkB" ["EG10037"] 2308691 2309445 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00074" "ahpCF" ["EG11384", "EG11385"] 638877 641318 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU00074" "ahpCF" ["EG11384", "EG11385"] 638921 641318 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU00075" "ansB" ["EG10046"] 3099654 3100751 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00076" "araE" ["EG10056"] 2980764 2982208 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00077" "cysB" ["EG10184"] 1333774 1334874 "+" [] +"TU00077" "cysB" ["EG10184"] 1333788 1334874 "+" [] "TU00078" "cysJIH" ["EG10189", "EG10190", "EG10191"] 2887578 2891964 "-" [] -"TU00079" "cysK" ["EG10192"] 2532324 2533424 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00080" "fadL" ["EG10280"] 2461013 2462646 "+" ["EV-COMP-HINF"] -"TU00081" "ilvIH" ["EG10500", "EG10499"] 85348 87848 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00079" "cysK" ["EG10192"] 2532377 2533424 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00080" "fadL" ["EG10280"] 2461205 2462646 "+" ["EV-COMP-HINF"] +"TU00081" "ilvIH" ["EG10500", "EG10499"] 85600 87848 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00082" "purEK" ["EG10796", "EG10793"] 551527 553142 "-" [] "TU00083" "rpoH" ["EG10897"] 3599887 3600849 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00084" "rpoH" ["EG10897"] 3599887 3600863 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00085" "tnaCAB" ["EG11276", "EG11005", "EG11006"] 3888308 3891483 "+" ["EV-EXP-IEP-COREGULATION", "EV-COMP-HINF"] +"TU00085" "tnaCAB" ["EG11276", "EG11005", "EG11006"] 3888411 3891483 "+" ["EV-EXP-IEP-COREGULATION", "EV-COMP-HINF"] "TU00086" "phoE" ["EG10729"] 259045 260158 "-" [] "TU00087" "tyrB" ["EG11040"] 4267082 4268340 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00088" "tyrP" ["EG11041"] 1989580 1990892 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-COMP-AINF-SINGLE-DIRECTON"] +"TU00088" "tyrP" ["EG11041"] 1989645 1990892 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-COMP-AINF-SINGLE-DIRECTON"] "TU00089" "glnB" ["EG10384"] 2687070 2687503 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00090" "ilvC" ["EG10495"] 3957851 3959445 "+" [] -"TU00091" "malT" ["EG10562"] 3552953 3555820 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00090" "ilvC" ["EG10495"] 3957912 3959445 "+" [] +"TU00091" "malT" ["EG10562"] 3553024 3555820 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00092" "fabA" ["EG10273"] 1015952 1016498 "-" [] "TU00093" "mtr" ["EG10617"] 3304573 3305860 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00094" "purA" ["EG10790"] 4404573 4405985 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00095" "aidB" ["EG11811"] 4414193 4415900 "+" [] +"TU00094" "purA" ["EG10790"] 4404664 4405985 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00095" "aidB" ["EG11811"] 4414247 4415900 "+" [] "TU00096" "slp-dctR" ["EG11889", "EG11890"] 3653936 3655213 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IEP-COREGULATION"] "TU00097" "appCBA-yccB" ["G0-10588", "EG11380", "EG11379", "EG10049"] 1037710 1041915 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IMP-POLAR-MUTATION"] "TU00098" "araFGH" ["EG10059", "EG10058", "EG10057"] 1982554 1986238 "-" ["EV-EXP-IEP-COREGULATION"] "TU00099" "araJ" ["EG10060"] 411297 412529 "-" [] -"TU00100" "cydAB" ["EG10173", "EG10174"] 770855 774181 "+" ["EV-AS-TAS"] +"TU00100" "cydAB" ["EG10173", "EG10174"] 771170 774181 "+" ["EV-AS-TAS"] "TU00101" "cyoABCDE" ["EG10182", "EG10181", "EG10180", "EG10179", "EG10178"] 446815 451653 "-" [] "TU00103" "sucABCD-sdhX" ["G0-17009", "EG10979", "EG10980", "EG10981", "EG10982"] 758586 765150 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00104" "fumA" ["EG10356"] 1686705 1688440 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-COMP-AINF"] "TU00105" "fumC" ["EG10358"] 1685185 1686709 "-" [] "TU00106" "gltA" ["EG10402"] 753126 754767 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00107" "icd" ["EG10489"] 1195005 1196373 "+" [] +"TU00107" "icd" ["EG10489"] 1195008 1196373 "+" [] "TU00108" "mdh" ["EG10576"] 3383330 3384313 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] -"TU00109" "carAB" ["EG10134", "EG10135"] 29610 34120 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00110" "carAB" ["EG10134", "EG10135"] 29246 34120 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00109" "carAB" ["EG10134", "EG10135"] 29619 34120 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00110" "carAB" ["EG10134", "EG10135"] 29551 34120 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00111" "argD" ["EG10066"] 3488960 3490221 "-" [] -"TU00112" "asnA" ["EG10091"] 3927019 3928147 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] +"TU00112" "asnA" ["EG10091"] 3927129 3928147 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU00113" "asnC" ["EG10093"] 3926545 3927031 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00114" "atoDAEB" ["EG11672", "EG11669", "EG11670", "EG11671"] 2323273 2327293 "+" [] +"TU00114" "atoDAEB" ["EG11672", "EG11669", "EG11670", "EG11671"] 2323412 2327293 "+" [] "TU00115" "betIBA" ["EG10109", "EG10110", "EG10111"] 325577 329361 "-" [] -"TU00116" "betT" ["EG10112"] 329391 331496 "+" [] -"TU00117" "bioBFCD" ["EG10118", "EG10121", "EG10119", "EG10120"] 809281 812947 "+" [] +"TU00116" "betT" ["EG10112"] 329421 331496 "+" [] +"TU00117" "bioBFCD" ["EG10118", "EG10121", "EG10119", "EG10120"] 809302 812947 "+" [] "TU00118" "cadC" ["EG10133"] 4360396 4361963 "-" [] -"TU00119" "crp" ["EG10164"] 3485861 3486792 "+" [] +"TU00119" "crp" ["EG10164"] 3485953 3486792 "+" [] "TU00120" "cpdB" ["EG10160"] 4434622 4436629 "-" [] "TU00121" "fur" ["EG10359"] 710118 710716 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00122" "glgCAP" ["EG10380", "EG10377", "EG10379"] 3564082 3569389 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU00123" "malK-lamB-malM" ["EG10558", "EG10528", "EG10559"] 4246505 4250474 "+" [] +"TU00123" "malK-lamB-malM" ["EG10558", "EG10528", "EG10559"] 4246736 4250474 "+" [] "TU00124" "speC" ["EG10961"] 3107020 3109175 "-" [] "TU00125" "tdcABCDEFG" ["G7624", "G7626", "G7627", "EG11172", "EG10991", "EG10990", "EG10989"] 3258285 3267093 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00126" "ubiG" ["EG11143"] 2339539 2340289 "+" [] "TU00127" "ebgAC" ["EG10252", "EG10253"] 3222551 3226171 "+" [] -"TU00128" "fucPIKUR" ["EG10352", "EG10349", "EG10350", "EG10355", "EG10353"] 2934038 2940099 "+" [] -"TU00129" "nupG" ["EG10664"] 3105558 3106970 "+" [] -"TU00130" "uhpT" ["EG11054"] 3845776 3847198 "-" [] -"TU00131" "melAB" ["EG10577", "EG10578"] 4341648 4344790 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00132" "malXY" ["EG10563", "EG10564"] 1699211 1702129 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION"] -"TU00133" "srlAEBD-gutM-srlR-gutQ" ["G8210", "EG10969", "EG10970", "EG10971", "EG10972", "EG10974", "EG10973"] 2825449 2830778 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00134" "udp" ["EG11045"] 4016297 4017192 "+" [] +"TU00128" "fucPIKUR" ["EG10352", "EG10349", "EG10350", "EG10355", "EG10353"] 2934119 2940099 "+" [] +"TU00129" "nupG" ["EG10664"] 3105651 3106970 "+" [] +"TU00130" "uhpTU" ["G0-17104", "EG11054"] 3845730 3847198 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-IC"] +"TU00131" "melAB" ["EG10577", "EG10578"] 4341887 4344790 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00132" "malXY" ["EG10563", "EG10564"] 1699313 1702129 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION"] +"TU00133" "srlAEBD-gutM-srlR-gutQ" ["G8210", "EG10969", "EG10970", "EG10971", "EG10972", "EG10974", "EG10973"] 2825791 2830778 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00134" "udp" ["EG11045"] 4016391 4017192 "+" [] "TU00135" "fucAO" ["EG10351", "EG10348"] 2931865 2933854 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00136" "flhDC" ["EG10319", "EG10320"] 1977200 1978395 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00137" "malS" ["EG11316"] 3737238 3739620 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] +"TU00137" "malS" ["EG11316"] 3737470 3739620 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU00138" "aldB" ["EG12292"] 3754906 3756535 "-" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP"] "TU00139" "hns" ["EG10457"] 1292461 1292958 "-" [] "TU00140" "gyrA" ["EG10423"] 2336793 2339457 "-" [] -"TU00141" "pck" ["EG10688"] 3532539 3534440 "+" [] -"TU00142" "cynTSX" ["EG10176", "EG10175", "EG10177"] 358742 361236 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00141" "pck" ["EG10688"] 3532679 3534440 "+" [] +"TU00142" "cynTSX" ["EG10176", "EG10175", "EG10177"] 358773 361236 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00143" "cynR" ["EG11421"] 357791 358709 "-" [] "TU00144" "cysPUWAM" ["EG10193", "EG10183", "EG10198", "EG10197", "EG10195"] 2538672 2543557 "-" [] "TU00146" "cysDNC" ["EG10185", "EG10194", "EG10186"] 2873234 2876368 "-" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP", "EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION"] -"TU00147" "nupC" ["EG11971"] 2512919 2514244 "+" [] -"TU00148" "dsdXA" ["EG10250", "EG10249"] 2477703 2480530 "+" [] +"TU00147" "nupC" ["EG11971"] 2513009 2514244 "+" [] +"TU00148" "dsdXA" ["EG10250", "EG10249"] 2477821 2480530 "+" [] "TU00149" "dsdC" ["EG13161"] 2476694 2477746 "-" [] -"TU00150" "exuT" ["EG12738"] 3244962 3246522 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP"] +"TU00150" "exuT" ["EG12738"] 3245002 3246522 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP"] "TU00151" "fecABCDE" ["EG10290", "EG10289", "EG10288", "EG10287", "EG10286"] 4510690 4516727 "-" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP", "EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00152" "fdhF" ["EG10285"] 4297178 4299407 "-" [] "TU00153" "hycABCDEFGHI" ["G7414", "EG10481", "EG10480", "EG10479", "EG10478", "EG10477", "EG10476", "EG10475", "EG10474"] 2842477 2850461 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00154" "hypABCDE" ["EG10483", "EG10484", "EG10485", "EG10486", "EG10487"] 2849875 2854321 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00155" "proP" ["EG11612"] 4330285 4332004 "+" [] +"TU00154" "hypABCDE" ["EG10483", "EG10484", "EG10485", "EG10486", "EG10487"] 2850627 2854321 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00155" "proP" ["EG11612"] 4330320 4332004 "+" [] "TU00156" "narXL" ["EG10643", "EG10646"] 1275179 1277777 "-" [] -"TU00157" "fdnGHI" ["EG11227", "EG11228", "EG11229"] 1547248 1551991 "+" [] -"TU00158" "ndh" ["EG10649"] 1165869 1167389 "+" [] +"TU00157" "fdnGHI" ["EG11227", "EG11228", "EG11229"] 1547372 1551991 "+" [] +"TU00158" "ndh" ["EG10649"] 1165992 1167389 "+" [] "TU00159" "fumB" ["EG10357"] 4345631 4347348 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00160" "aspA" ["EG10095"] 4366844 4368432 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00161" "fruBKA" ["EG10336", "EG10337", "G7990"] 2259719 2263597 "-" ["EV-AS-TAS"] @@ -3224,8 +3248,8 @@ "TU00163" "fepA-entD" ["EG10262", "EG10293"] 609459 612667 "-" [] "TU00164" "fepB" ["EG10294"] 623554 624727 "-" [] "TU00165" "fepDGC" ["EG10295", "EG10298", "EG10296"] 619384 622234 "-" [] -"TU00166" "entCEBA-ybdB" ["EG10261", "EG10263", "EG10260", "EG10259", "EG11105"] 624563 629713 "+" ["EV-EXP-IMP-POLAR-MUTATION"] -"TU00167" "tonB" ["EG11012"] 1311029 1311846 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00166" "entCEBA-ybdB" ["EG10261", "EG10263", "EG10260", "EG10259", "EG11105"] 624831 629713 "+" ["EV-EXP-IMP-POLAR-MUTATION"] +"TU00167" "tonB" ["EG11012"] 1311054 1311846 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00168" "mglBAC" ["EG10594", "EG10592", "EG10593"] 2236743 2240566 "-" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IEP-COREGULATION"] "TU00169" "gatYZABCD" ["EG12417", "EG12416", "EG12415", "EG12414", "G7128", "EG12419"] 2171833 2177234 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00170" "gcvTHP" ["EG11810", "EG10371", "EG11442"] 3046126 3050772 "-" [] @@ -3233,60 +3257,60 @@ "TU00172" "glnHPQ" ["EG10389", "EG10388", "EG10386"] 845741 848047 "-" [] "TU00173" "glpFKX" ["EG11517", "EG10398", "EG10396"] 4114527 4118161 "-" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00174" "ihfA" ["EG10440"] 1795216 1795721 "-" [] -"TU00175" "ihfB" ["EG10441"] 963429 964173 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00175" "ihfB" ["EG10441"] 963749 964173 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00176" "dps" ["EG11415"] 848408 848950 "-" [] "TU00177" "ompR-envZ" ["EG10269", "EG10672"] 3534473 3536685 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00178" "thrLABC" ["EG11277", "EG10998", "EG10999", "EG11000"] 148 5086 "+" ["EV-EXP-IMP-POLAR-MUTATION"] "TU00179" "leuLABCD" ["EG11575", "EG11576", "EG11577", "EG11226", "EG11280"] 78848 83735 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU00180" "umuDC" ["EG11057", "EG11056"] 1230717 1232454 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00181" "lrp" ["EG10547"] 932272 933089 "+" [] -"TU00182" "gltBDF" ["EG10403", "EG10404", "EG11514"] 3354157 3361940 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00180" "umuDC" ["EG11057", "EG11056"] 1230738 1232454 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00181" "lrp" ["EG10547"] 932328 933089 "+" [] +"TU00182" "gltBDF" ["EG10403", "EG10404", "EG11514"] 3354509 3361940 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00183" "livJ" ["EG10539"] 3598555 3599762 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00184" "livKHMGF" ["EG10536", "EG10537", "EG10541", "EG10538", "EG10540"] 3592724 3597755 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION"] "TU00185" "lysA" ["EG10549"] 2977637 2978951 "-" [] "TU00186" "lysR" ["EG10551"] 2978950 2979956 "+" [] "TU00187" "malI" ["EG10557"] 1698136 1699228 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00188" "fpr" ["EG10628"] 4113726 4114499 "-" [] -"TU00189" "nfo" ["EG10651"] 2250767 2251697 "+" [] -"TU00190" "marRAB" ["EG11435", "EG11434", "EG11599"] 1619012 1620207 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP", "EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00189" "nfo" ["EG10651"] 2250806 2251697 "+" [] +"TU00190" "marRAB" ["EG11435", "EG11434", "EG11599"] 1619093 1620207 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP", "EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00191" "metC" ["EG10583"] 3152075 3153423 "+" [] "TU00192" "glyA" ["EG10408"] 2684075 2685574 "-" [] -"TU00193" "mtlADR" ["EG10615", "EG10616", "EG11965"] 3771926 3776419 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00193" "mtlADR" ["EG10615", "EG10616", "EG11965"] 3772188 3776419 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00194" "nadB" ["EG10631"] 2710357 2712042 "+" [] "TU00195" "pncB" ["EG10742"] 989154 990414 "-" [] -"TU00196" "manXYZ" ["EG10567", "EG10568", "EG10569"] 1901840 1904746 "+" [] -"TU00197" "codBA" ["EG11327", "EG11326"] 354826 357454 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IEP-COREGULATION"] +"TU00196" "manXYZ" ["EG10567", "EG10568", "EG10569"] 1901933 1904746 "+" [] +"TU00197" "codBA" ["EG11327", "EG11326"] 354884 357454 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IEP-COREGULATION"] "TU00198" "adhE" ["EG10031"] 1295446 1298413 "-" ["EV-EXP-TAS"] -"TU00199" "nrfABCDEFG" ["EG11781", "EG11945", "EG11946", "EG11947", "EG11948", "EG11949", "EG11950"] 4287544 4294139 "+" [] -"TU00200" "nhaAR" ["EG11078", "EG10652"] 17414 19620 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00199" "nrfABCDEFG" ["EG11781", "EG11945", "EG11946", "EG11947", "EG11948", "EG11949", "EG11950"] 4287671 4294139 "+" [] +"TU00200" "nhaAR" ["EG11078", "EG10652"] 17458 19620 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00201" "phnCDEEFGHIJKLMNOP" ["EG10725", "EG10724", "EG10723", "EG10722", "EG10721", "EG10720", "EG10719", "EG10718", "EG10717", "EG10716", "EG10715", "EG11283", "EG10714", "EG10713"] 4314344 4325206 "-" [] "TU00202" "pstSCAB-phoU" ["EG10735", "EG10783", "EG10782", "EG10784", "EG10734"] 3906853 3911568 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00203" "prs" ["EG10774"] 1260895 1262177 "-" [] "TU00204" "speAB" ["EG10960", "EG10959"] 3082877 3086048 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00205" "guaBA" ["EG10420", "EG10421"] 2630906 2634107 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU00206" "rbsDACBKR" ["EG10819", "EG10817", "EG10814", "EG10816", "EG10815", "EG10818"] 3933259 3939219 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00206" "rbsDACBZKR" ["G0-17077", "EG10819", "EG10817", "EG10814", "EG10816", "EG10815", "EG10818"] 3933322 3939219 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00207" "wza-wzb-wzc-wcaAB" ["G7103", "G7104", "G7105", "G7106", "G7107"] 2132067 2137583 "-" [] "TU00208" "rhaT" ["EG11313"] 4099491 4100566 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00209" "zwf" ["EG11221"] 1934839 1936376 "-" [] -"TU00210" "ftsQAZ" ["EG10342", "EG10339", "EG10347"] 102703 106456 "+" ["EV-EXP-IEP-COREGULATION"] +"TU00210" "ftsQAZ" ["EG10342", "EG10339", "EG10347"] 102867 106456 "+" ["EV-EXP-IEP-COREGULATION"] "TU00211" "soxS" ["EG10958"] 4277060 4277423 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00212" "torCAD" ["EG11815", "EG11814", "EG12195"] 1057977 1062398 "+" [] +"TU00212" "torCAD" ["EG11815", "EG11814", "EG12195"] 1058056 1062398 "+" [] "TU00213" "treBC" ["EG11402", "EG12127"] 4463054 4466210 "-" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP", "EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00214" "araBAD" ["EG10055", "EG10052", "EG10053"] 65800 70075 "-" [] "TU00215" "fadBA" ["EG10278", "EG10279"] 4027609 4031013 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU00216" "glpTQ" ["EG10399", "EG10401"] 2349935 2352451 "-" [] -"TU00218" "metF" ["EG10585"] 4132537 4133506 "+" [] +"TU00218" "metF" ["EG10585"] 4132546 4133506 "+" [] "TU00219" "rhaBAD" ["EG11866", "EG11867", "EG11868"] 4093448 4097472 "-" ["EV-EXP-IEP-COREGULATION"] -"TU00220" "trpR" ["EG11029"] 4632703 4633144 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00220" "trpR" ["EG11029"] 4632704 4633144 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00221" "lysU" ["EG10553"] 4353200 4354805 "-" [] -"TU00222" "oppABCDF" ["EG10674", "EG10675", "EG10676", "EG10677", "EG10678"] 1299267 1306768 "+" ["EV-EXP-IEP-COREGULATION"] +"TU00222" "oppABCDF" ["EG10674", "EG10675", "EG10676", "EG10677", "EG10678"] 1301085 1306768 "+" ["EV-EXP-IEP-COREGULATION"] "TU00223" "sdaA" ["EG10930"] 1896809 1898331 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00224" "serA" ["EG10944"] 3057178 3058456 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00225" "kbl-tdh" ["EG10993", "EG10512"] 3790320 3792577 "-" [] "TU00226" "argE" ["EG11286"] 4153696 4154897 "-" [] "TU00227" "edd-eda" ["EG10256", "EG10257"] 1932085 1934713 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00228" "gntKU" ["EG12631", "EG12629"] 3575688 3577645 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00229" "gntT" ["EG12380"] 3546333 3547875 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00229" "gntT" ["EG12380"] 3546405 3547875 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00230" "accA" ["EG11647"] 208411 209580 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00231" "accBC" ["EG10275", "EG10276"] 3405140 3407302 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00232" "accD" ["EG10217"] 2432963 2434015 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] @@ -3296,9 +3320,9 @@ "TU00236" "yjeFE-amiB-mutL-miaA-hfq-hflXKC" ["EG11757", "EG11758", "EG11363", "EG11281", "EG10595", "EG10438", "EG10437", "EG10436", "EG10435"] 4393677 4404304 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00237" "ampDE" ["EG10041", "EG10042"] 118703 120135 "+" [] "TU00238" "ansA-pncA" ["EG11135", "EG10045"] 1850860 1852528 "+" ["EV-EXP-IMP-POLAR-MUTATION"] -"TU00239" "arsRBC" ["EG12235", "EG12236", "EG12237"] 3648470 3650662 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-COMP-HINF"] +"TU00239" "arsRBC" ["EG12235", "EG12236", "EG12237"] 3648512 3650662 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-COMP-HINF"] "TU00240" "artPIQM" ["EG11627", "EG11626", "EG11625", "EG11624"] 900695 903769 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00241" "ascFB" ["EG10086", "EG10085"] 2839356 2842414 "+" [] +"TU00241" "ascFB" ["EG10086", "EG10085"] 2839429 2842414 "+" [] "TU00242" "ascG" ["EG10087"] 2838254 2839264 "-" [] "TU00243" "atpIBEFHAGDC" ["EG10100", "EG10101", "EG10104", "EG10098", "EG10105", "EG10103", "EG10102", "EG10099", "EG10106"] 3915508 3922525 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IMP-POLAR-MUTATION"] "TU00244" "baeSR" ["EG11617", "EG11618"] 2162876 2164998 "+" [] @@ -3312,7 +3336,7 @@ "TU00252" "cobUST" ["EG12151", "EG12150", "EG13238"] 2063388 2065874 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00253" "creABCD" ["EG11217", "EG11218", "EG10730", "EG10145"] 4635477 4639572 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00254" "cydDC" ["EG10012", "EG11405"] 927474 931031 "-" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00255" "dadAX" ["EG11407", "EG11408"] 1237457 1239949 "+" ["EV-EXP-IEP-COREGULATION", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU00255" "dadAX" ["EG11407", "EG11408"] 1237525 1239949 "+" ["EV-EXP-IEP-COREGULATION", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU00256" "dapA-nlpB" ["EG10658", "EG10205"] 2597803 2599784 "-" ["EV-EXP-IMP-POLAR-MUTATION"] "TU00257" "dcm-vsr" ["EG11068", "EG10211"] 2030448 2032317 "-" [] "TU00258" "def-fmt" ["EG11440", "EG11268"] 3433650 3435161 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] @@ -3325,14 +3349,14 @@ "TU00265" "exbBD" ["EG10272", "EG10271"] 3150552 3152014 "-" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00266" "fabHDG" ["EG10277", "EG11317", "EG11318"] 1148516 1151404 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU00267" "fabZ" ["EG11284"] 202101 202556 "+" [] -"TU00268" "fdoGHI-fdhE" ["EG10284", "EG11856", "EG11857", "EG11858"] 4080299 4085822 "-" [] -"TU00269" "feoABC" ["EG12933", "EG12101", "EG12102"] 3539966 3542964 "+" ["EV-EXP-IMP-POLAR-MUTATION"] -"TU00270" "fes-ybdZ-entF-fepE" ["G0-10437", "EG10299", "EG10264", "EG10297"] 612543 619387 "+" [] +"TU00268" "fdoGHI-fdhE" ["EG10284", "EG11856", "EG11857", "EG11858"] 4080299 4085848 "-" [] +"TU00269" "feoABC" ["EG12933", "EG12101", "EG12102"] 3540057 3542964 "+" ["EV-EXP-IMP-POLAR-MUTATION"] +"TU00270" "fes-ybdZ-entF-fepE" ["G0-10437", "EG10299", "EG10264", "EG10297"] 612687 619387 "+" [] "TU00272" "flgAMN" ["G6562", "G369", "G357"] 1129414 1130885 "-" [] -"TU00273" "flgBCDEFGHIJ" ["G358", "G359", "G360", "G361", "G362", "G363", "G364", "G365", "G366"] 1130938 1138312 "+" [] -"TU00274" "fliDST" ["EG10841", "EG11388", "EG11389"] 2003762 2006165 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00273" "flgBCDEFGHIJ" ["G358", "G359", "G360", "G361", "G362", "G363", "G364", "G365", "G366"] 1130993 1138312 "+" [] +"TU00274" "fliDST" ["EG10841", "EG11388", "EG11389"] 2003817 2006165 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00275" "fliFGHIJK" ["EG11347", "EG11654", "EG11656", "G377", "G378", "G379"] 2013205 2019513 "+" [] -"TU00276" "fliLMNOPQR" ["EG10322", "EG10323", "EG10324", "EG11224", "EG11975", "EG11976", "EG11977"] 2019533 2023678 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU00276" "fliLMNOPQR" ["EG10322", "EG10323", "EG10324", "EG11224", "EG11975", "EG11976", "EG11977"] 2019584 2023678 "+" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU00277" "rlmE-ftsH" ["EG11506", "EG11507"] 3324942 3327760 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00278" "ftsYEX" ["EG10345", "EG10340", "EG10346"] 3601028 3604243 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU00279" "glgS" ["EG11381"] 3191716 3192012 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-COMP-AINF-SINGLE-DIRECTON"] @@ -3344,7 +3368,7 @@ "TU00285" "hisLGDCBHAFI" ["EG11269", "EG10449", "EG10447", "EG10446", "EG10445", "EG10450", "EG10444", "EG10448", "EG10451"] 2089965 2097225 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IEP-COREGULATION"] "TU00286" "hsdMS" ["EG10460", "EG10458"] 4580068 4583048 "-" [] "TU00287" "hslVU" ["EG11881", "EG11676"] 4120368 4122354 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00288" "hyaABCDEF" ["EG10468", "EG10469", "EG10470", "EG10471", "EG10472", "EG10473"] 1031917 1037634 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IEP-COREGULATION"] +"TU00288" "hyaABCDEF" ["EG10468", "EG10469", "EG10470", "EG10471", "EG10472", "EG10473"] 1031984 1037634 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IEP-COREGULATION"] "TU00289" "hybOABCDEFG" ["G7554", "EG11805", "EG11804", "EG11803", "EG11802", "EG11801", "EG11800", "EG11799"] 3139716 3146363 "-" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IEP"] "TU00291" "ribF-ileS-lspA-fkpB-ispH" ["EG11079", "EG10492", "EG10548", "EG11080", "EG11081"] 21383 27279 "+" ["EV-EXP-IEP"] "TU00292" "kdpDE" ["EG10517", "EG10516"] 721056 724414 "-" [] @@ -3353,15 +3377,15 @@ "TU00297" "mdoGH" ["EG11885", "EG11886"] 1109278 1113560 "+" ["EV-EXP-IMP-POLAR-MUTATION"] "TU00298" "menFD-yfbB-menBCE" ["EG12437", "EG11532", "EG11368", "EG12438", "EG10579", "EG12362"] 2373648 2380643 "-" [] "TU00299" "minCDE" ["EG10598", "EG10597", "EG10596"] 1224279 1226080 "-" [] -"TU00300" "moaABCDE" ["EG11595", "EG11596", "EG11666", "EG11597", "EG11598"] 816787 819747 "+" [] -"TU00301" "modABC" ["EG12427", "EG10002", "EG10152"] 794999 797612 "+" [] +"TU00300" "moaABCDE" ["EG11595", "EG11596", "EG11666", "EG11597", "EG11598"] 816827 819747 "+" [] +"TU00301" "modABC" ["EG12427", "EG10002", "EG10152"] 795062 797612 "+" [] "TU00302" "moeAB" ["EG10154", "EG10153"] 864380 866394 "-" [] "TU00303" "motRAB-cheAW" ["G0-17103", "EG10149", "EG10146", "EG10602", "EG10601"] 1972771 1977302 "-" [] "TU00304" "mreBCD" ["EG10610", "EG10609", "EG10608"] 3398387 3401129 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IMP-POLAR-MUTATION"] "TU00305" "napFDAGHBC-ccmABCDEFGH" ["EG12052", "EG12053", "EG12054", "EG12055", "EG12169", "EG12057", "EG12058", "EG12059", "EG12060", "EG12061", "EG12062", "EG12064", "EG12067", "EG12143", "EG12068"] 2291358 2303574 "-" [] "TU00306" "narZYWV" ["EG10644", "EG10645", "EG10647", "EG10648"] 1535937 1542590 "-" [] "TU00307" "nfrBA" ["EG11740", "EG11739"] 587982 593178 "-" [] -"TU00308" "nikABCDER" ["EG11519", "EG12075", "EG12076", "EG12077", "EG12078", "EG12079"] 3613587 3618989 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP", "EV-EXP-IMP-POLAR-MUTATION"] +"TU00308" "nikABCDER" ["EG11519", "EG12075", "EG12076", "EG12077", "EG12078", "EG12079"] 3613628 3618989 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP", "EV-EXP-IMP-POLAR-MUTATION"] "TU00309" "nlpD-rpoS" ["EG10510", "EG12111"] 2866559 2868829 "-" ["EV-EXP-IMP-POLAR-MUTATION"] "TU00310" "nuoABCEFGHIJKLMN" ["EG12093", "EG11773", "EG12092", "EG12091", "EG12090", "EG12089", "EG12088", "EG12087", "EG11774", "EG12086", "EG12084", "EG12083", "EG12082"] 2390005 2405162 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00311" "rimP-nusA-infB" ["EG11179", "EG10505", "EG10665"] 3313185 3318175 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] @@ -3377,7 +3401,7 @@ "TU00323" "ppk-ppx" ["EG11403", "EG11510"] 2623044 2626656 "+" ["EV-EXP-IMP-POLAR-MUTATION"] "TU00324" "prfB-lysS" ["EG10552", "EG10762"] 3033657 3036282 "-" [] "TU00325" "proBA" ["EG10768", "EG10767"] 260388 262756 "+" [] -"TU00326" "pspABCDE" ["EG10776", "EG10777", "EG10778", "EG10779", "EG10780"] 1367919 1370003 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00326" "pspABCDE" ["EG10776", "EG10777", "EG10778", "EG10779", "EG10780"] 1368038 1370003 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00327" "rcsB" ["EG10821"] 2315695 2316827 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00328" "rcsC" ["EG10822"] 2317027 2319876 "-" [] "TU00329" "rfaDFCL" ["EG10838", "EG12210", "EG11189", "EG11424"] 3793865 3798207 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] @@ -3404,24 +3428,24 @@ "TU00354" "secE-nusG" ["EG10939", "EG10667"] 4177177 4178356 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00355" "selAB" ["EG10942", "EG10941"] 3758017 3761297 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IEP-COREGULATION"] "TU00356" "ydjA-selD-topB" ["EG11014", "EG11134", "EG10943"] 1844932 1848700 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00357" "serC-aroA" ["EG10946", "EG10073"] 957461 960095 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00357" "serC-aroA" ["EG10946", "EG10073"] 957595 960095 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00358" "sfsA-dksA" ["EG10230", "EG10949"] 160149 161515 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00359" "yacC-speED" ["EG11089", "EG10962", "EG10963"] 134756 136940 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00360" "speF-potE" ["G0-17074", "EG10753", "EG10964"] 716946 720822 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00361" "sspAB" ["EG10978", "EG10977"] 3376249 3377569 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00362" "surA-pdxA-rsmA-apaGH" ["EG10048", "EG10047", "EG10523", "EG10691", "EG10985"] 50380 54732 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION"] +"TU00362" "surA-pdxA-rsmA-apaGH" ["EG10048", "EG10047", "EG10523", "EG10691", "EG10985"] 50380 54702 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION"] "TU00363" "umpG-pcm" ["EG10689", "EG11817"] 2868893 2870686 "-" ["EV-EXP-IMP-POLAR-MUTATION", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU00364" "tehAB" ["EG11883", "EG11884"] 1500535 1502155 "+" ["EV-EXP-TAS"] +"TU00364" "tehAB" ["EG11883", "EG11884"] 1500536 1502155 "+" ["EV-EXP-TAS"] "TU00365" "thiCEFSGH" ["G1", "EG11590", "EG11589", "EG11587", "EG11586", "EG11585"] 4190735 4196281 "-" [] "TU00366" "thrS-infC" ["EG10506", "EG11001"] 1800035 1802733 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00367" "ybgC-tolQRA" ["EG11110", "EG11010", "EG11011", "EG11007"] 774752 777607 "+" ["EV-EXP-IMP-POLAR-MUTATION"] "TU00368" "ttdABT" ["EG12393", "EG11168", "EG11169"] 3206424 3209487 "+" ["EV-EXP-IEP-COREGULATION", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00369" "ubiCA" ["EG11369", "EG11370"] 4252431 4253888 "+" [] +"TU00369" "ubiCA" ["EG11369", "EG11370"] 4252443 4253888 "+" [] "TU00370" "udk-dcd" ["EG11418", "EG11701"] 2141634 2142948 "-" [] "TU00371" "uhpABC" ["EG11053", "EG11052", "EG11051"] 3847305 3850726 "-" [] "TU00372" "uxaB" ["EG11065"] 1609229 1610680 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP"] "TU00373" "xseB-ispA-dxs-yajO" ["G6236", "G6237", "EG10508", "EG11098"] 437161 441373 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00374" "xylFGHR" ["EG20252", "EG12275", "EG12276", "EG20253"] 3730888 3736157 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IEP-COREGULATION"] +"TU00374" "xylFGHR" ["EG20252", "EG12275", "EG12276", "EG20253"] 3731069 3736157 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IEP-COREGULATION"] "TU00375" "dsdA" ["EG10249"] 2479121 2480530 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00377" "focA-pflB" ["EG10701", "EG11258"] 951207 954493 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00378" "focA-pflB" ["EG10701", "EG11258"] 951207 954503 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] @@ -3432,11 +3456,11 @@ "TU00383" "pflB" ["EG10701"] 951207 953851 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00384" "pflB" ["EG10701"] 951207 953925 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00385" "ackA" ["EG10027"] 2413459 2414672 "+" [] -"TU00386" "bolA" ["EG10125"] 454386 454865 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00386" "bolA" ["EG10125"] 454434 454865 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00387" "cbpAM" ["EG12194", "EG12193"] 1062550 1063833 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU00388" "osmB" ["EG10679"] 1343110 1343476 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00389" "osmB" ["EG10679"] 1343110 1343369 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00390" "csgBAC" ["G6548", "G6547", "EG11489"] 1103821 1105293 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00390" "csgBAC" ["G6548", "G6547", "EG11489"] 1103859 1105293 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00391" "otsA" ["EG11751"] 1980096 1981651 "-" ["EV-EXP-IMP-POLAR-MUTATION"] "TU00392" "csgDEFG" ["G6543", "G6544", "G6545", "G6546"] 1100851 1103344 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00393" "stpA" ["EG11554"] 2798091 2798536 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] @@ -3458,7 +3482,7 @@ "TU00409" "fimB" ["EG10309"] 4540809 4541559 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00410" "fimB" ["EG10309"] 4540667 4541559 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00411" "grpE" ["EG10416"] 2750115 2750747 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00412" "fimB" ["EG10309"] 4540927 4541559 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00412" "fimB" ["EG10309"] 4540942 4541559 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00414" "rlmE-ftsH" ["EG11506", "EG11507"] 3324942 3327731 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00415" "fliAZY" ["G7039", "EG11356", "EG11355"] 1999541 2001819 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00416" "gltA" ["EG10402"] 753126 754670 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] @@ -3468,8 +3492,8 @@ "TU00420" "glgS" ["EG11381"] 3191716 3192002 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-COMP-AINF-SINGLE-DIRECTON"] "TU00421" "clpB" ["EG10157"] 2731557 2734205 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00423" "hscBA-fdx-iscX" ["EG12311", "EG11328", "EG12130", "EG12131"] 2656506 2659524 "-" ["EV-IC-ADJ-GENES-SAME-BIO-PROCESS", "EV-EXP-IEP-COREGULATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00424" "hypBCDE" ["EG10484", "EG10485", "EG10486", "EG10487"] 2850689 2854321 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00425" "icd" ["EG10489"] 1194884 1196373 "+" ["EV-EXP-IEP-COREGULATION"] +"TU00424" "hypBCDE" ["EG10484", "EG10485", "EG10486", "EG10487"] 2850839 2854321 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00425" "icd" ["EG10489"] 1194961 1196373 "+" ["EV-EXP-IEP-COREGULATION"] "TU00426" "rpoH" ["EG10897"] 3599887 3601003 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00427" "rpoH" ["EG10897"] 3599887 3600870 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00428" "lrhA" ["EG12123"] 2405703 2406656 "-" [] @@ -3501,7 +3525,7 @@ "TU00455" "corA" ["EG11463"] 4001194 4002376 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00456" "soxR" ["EG10957"] 4277447 4277957 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00457" "livKHMGF" ["EG10536", "EG10537", "EG10541", "EG10538", "EG10540"] 3592724 3597730 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION"] -"TU00459" "emrRAB" ["EG10603", "EG11354", "EG11439"] 2810737 2814154 "+" ["EV-EXP-IMP-POLAR-MUTATION"] +"TU00459" "emrRAB" ["EG10603", "EG11354", "EG11439"] 2810747 2814154 "+" ["EV-EXP-IMP-POLAR-MUTATION"] "TU00460" "fecIR" ["EG10292", "EG10291"] 4516764 4518282 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00461" "appA" ["EG10049"] 1040599 1041915 "+" [] "TU00463" "ppiA" ["EG10757"] 3491725 3492335 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] @@ -3520,34 +3544,34 @@ "TU00476" "ompC" ["EG10670"] 2311610 2312864 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00477" "ompC" ["EG10670"] 2311610 2312887 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00478" "yhfA" ["EG11182"] 3485414 3485951 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00479" "ptsHI-crr" ["EG10788", "EG10789", "EG10165"] 2533437 2536380 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00480" "ptsHI-crr" ["EG10788", "EG10789", "EG10165"] 2533437 2536380 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00479" "ptsHI-crr" ["EG10788", "EG10789", "EG10165"] 2533501 2536380 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00480" "ptsHI-crr" ["EG10788", "EG10789", "EG10165"] 2533498 2536380 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00481" "ptsHI-crr" ["EG10788", "EG10789", "EG10165"] 2533507 2536380 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00482" "ptsHI-crr" ["EG10788", "EG10789", "EG10165"] 2533552 2536380 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00483" "ptsHI-crr" ["EG10788", "EG10789", "EG10165"] 2533552 2536380 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00482" "ptsHI-crr" ["EG10788", "EG10789", "EG10165"] 2533601 2536380 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00483" "ptsHI-crr" ["EG10788", "EG10789", "EG10165"] 2533608 2536380 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00484" "pyrLBI" ["EG11279", "EG10811", "EG10805"] 4470986 4472553 "-" ["EV-EXP-IEP-COREGULATION"] "TU00485" "pyrLBI" ["EG11279", "EG10811", "EG10805"] 4470986 4472745 "-" ["EV-EXP-IEP-COREGULATION"] -"TU00486" "rcsA" ["EG10820"] 2023664 2024591 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00486" "rcsA" ["EG10820"] 2023836 2024591 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00487" "rpoN-hpf-ptsN-yhbJ-npr" ["EG10898", "EG11681", "EG11682", "EG12146", "EG12147"] 3344662 3348289 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00488" "glmUS" ["EG10382", "EG11198"] 3911810 3915326 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU00489" "aspV" ["EG30025"] 236837 237067 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00490" "thrW" ["EG30104"] 262775 262946 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00491" "argU" ["EG30014"] 564638 564799 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00492" "lysT-valT-lysW" ["EG30055", "EG30109", "EG30057"] 780440 780918 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00489" "aspV" ["EG30025"] 236913 237067 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00490" "thrW" ["EG30104"] 262841 262946 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00491" "argU" ["EG30014"] 564703 564799 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00492" "lysT-valT-lysW" ["EG30055", "EG30109", "EG30057"] 780514 780918 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00493" "valVW" ["EG30111", "EG30112"] 1746415 1746592 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00494" "proL" ["EG30067"] 2286141 2286331 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00494" "proL" ["EG30067"] 2286207 2286331 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00495" "valUXY-lysV" ["EG30110", "EG30113", "EG30114", "EG30056"] 2520924 2521519 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00496" "metZWV" ["EG30062", "EG31117", "EG30060"] 2947382 2947756 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00497" "asnT" ["EG30020"] 2044541 2044750 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00498" "asnU" ["EG30021"] 2059845 2059966 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00499" "asnV" ["EG30022"] 2062252 2062335 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00500" "argW" ["EG30016"] 2466234 2466383 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00501" "pheV" ["EG30065"] 3110290 3110477 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00500" "argW" ["EG30016"] 2466308 2466383 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00501" "pheV" ["EG30065"] 3110365 3110477 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00502" "ileX" ["EG30046"] 3215597 3215716 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00503" "argX-hisR-leuT-proM" ["EG30017", "EG30042", "EG30049", "EG30068"] 3982289 3982841 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00504" "thrU-tyrU-glyT-thrT-tufB" ["EG11037", "EG30102", "EG30107", "EG30036", "EG30101"] 4175258 4177185 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IEP-COREGULATION"] +"TU00503" "argX-hisR-leuT-proM" ["EG30017", "EG30042", "EG30049", "EG30068"] 3982364 3982841 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00504" "thrU-tyrU-glyT-thrT-tufB" ["EG11037", "EG30102", "EG30107", "EG30036", "EG30101"] 4175381 4177185 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IEP-COREGULATION"] "TU00505" "glyVXY" ["EG30038", "EG30040", "EG30041"] 4392313 4392658 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU00506" "leuX" ["EG30053"] 4496311 4496529 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU00506" "leuX" ["EG30053"] 4496386 4496529 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00507" "metT-leuW-glnUW-metU-glnVX" ["EG30031", "EG30029", "EG30059", "EG30030", "EG30028", "EG30052", "EG30058"] 696392 697163 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00508" "serW" ["EG30096"] 925843 926006 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00509" "serT" ["EG30093"] 1031551 1031719 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] @@ -3563,25 +3587,25 @@ "TU00519" "proK" ["EG30066"] 3708409 3708694 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU00520" "pheU" ["EG30064"] 4362509 4362627 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00521" "leuQPV" ["EG30051", "EG30047", "EG30048"] 4606079 4606432 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00522" "pdhR-aceEF-lpdA" ["EG11088", "EG10024", "EG10025", "EG10543"] 121656 129394 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00523" "lpdA" ["EG10543"] 127688 129394 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00524" "sdhCDAB-sucABCD-sdhX" ["G0-17009", "EG10933", "EG10934", "EG10931", "EG10932", "EG10979", "EG10980", "EG10981", "EG10982"] 754747 765150 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00522" "pdhR-aceEF-lpdA" ["EG11088", "EG10024", "EG10025", "EG10543"] 122034 129394 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00523" "lpdA" ["EG10543"] 127717 129394 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00524" "sdhCDAB-sucABCD-sdhX" ["G0-17009", "EG10933", "EG10934", "EG10931", "EG10932", "EG10979", "EG10980", "EG10981", "EG10982"] 754958 765150 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00526" "rseABC" ["G7347", "G7348", "EG12341"] 2707322 2709632 "-" ["EV-EXP-IEP-COREGULATION"] "TU00527" "pykF" ["EG10804"] 1755467 1757110 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU101" "uxuAB" ["EG20248", "EG11066"] 4551358 4554361 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP"] -"TU102" "aldA" ["EG10035"] 1488033 1489671 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU101" "uxuAB" ["EG20248", "EG11066"] 4551518 4554361 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP"] +"TU102" "aldA" ["EG10035"] 1488190 1489671 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU103" "putP" ["EG10802"] 1079168 1080838 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU104" "putP" ["EG10802"] 1079179 1080838 "+" [] "TU121" "putP" ["EG10802"] 1079185 1080838 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU122" "putP" ["EG10802"] 1079104 1080838 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU122" "putP" ["EG10802"] 1079210 1080838 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU123" "putP" ["EG10802"] 1079291 1080838 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU141" "caiF" ["G6088"] 34162 34695 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU142" "fixABCX" ["EG11565", "EG11564", "EG11563", "EG11562"] 42127 45750 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU141" "caiF" ["G6088"] 34218 34695 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU142" "fixABCX" ["EG11565", "EG11564", "EG11563", "EG11562"] 42325 45750 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU161" "ompR-envZ" ["EG10269", "EG10672"] 3534473 3536707 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU162" "ompR-envZ" ["EG10269", "EG10672"] 3534473 3536639 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU163" "ompR-envZ" ["EG10269", "EG10672"] 3534473 3536755 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU164" "lldPRD" ["EG11963", "EG11962", "EG11961"] 3777271 3781017 "+" ["EV-EXP-IEP-COREGULATION"] -"TU182" "fimAICDFGH" ["G0-17115", "EG10311", "EG10315", "EG10314", "EG10313", "EG10310", "EG11974", "EG10308"] 4542642 4549710 "+" ["EV-EXP-IMP-POLAR-MUTATION"] +"TU164" "lldPRD" ["EG11963", "EG11962", "EG11961"] 3777289 3781017 "+" ["EV-EXP-IEP-COREGULATION"] +"TU182" "fimAICDFGH" ["G0-17115", "EG10311", "EG10315", "EG10314", "EG10313", "EG10310", "EG11974", "EG10308"] 4542694 4549710 "+" ["EV-EXP-IMP-POLAR-MUTATION"] "TU183" "fimE" ["EG10312"] 4541871 4542902 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU21" "tolB-pal-ybgF" ["EG12854", "EG10684", "EG11008"] 777740 780389 "+" ["EV-EXP-IMP-POLAR-MUTATION"] "TU221" "rpoH" ["EG10897"] 3599887 3600813 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] @@ -3596,7 +3620,7 @@ "TU281" "rseD-rpoE-rseABC" ["G0-16690", "G7347", "G7348", "EG12341", "EG11897"] 2707322 2710186 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU3" "trpCBA" ["EG11024", "EG11025", "EG11026"] 1316416 1319944 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION"] "TU301" "xapAB" ["EG13159", "G85"] 2522698 2524910 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IEP-COREGULATION"] -"TU302" "tauABCD" ["EG12423", "G6219", "G6218", "G6217"] 385003 388646 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION"] +"TU302" "tauABCD" ["EG12423", "G6219", "G6218", "G6217"] 385205 388646 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION"] "TU305" "ychQA-kdsA" ["EG10518", "EG11251", "G6630"] 1266899 1269067 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU306" "kdsA" ["EG10518"] 1267854 1269067 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU341" "metY-yhbC-nusA-infB-rbfA-truB-rpsO-pnp" ["EG10743", "EG10914", "EG11177", "EG11178", "EG10505", "EG10665", "EG11179", "EG30061"] 3308999 3318375 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION"] @@ -3610,12 +3634,12 @@ "TU354" "arcA" ["EG10061"] 4639539 4640681 "-" [] "TU355" "putA" ["EG10801"] 1074920 1078925 "-" [] "TU356" "nmpC" ["EG10659"] 574529 576870 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU358" "cydAB" ["EG10174", "EG10173"] 771116 774181 "+" [] +"TU358" "cydAB" ["EG10174", "EG10173"] 771284 774181 "+" [] "TU359" "cutA" ["EG12177"] 4365018 4365392 "-" ["EV-EXP-IMP-POLAR-MUTATION"] "TU361" "cmk-rpsA" ["EG10900", "EG11265"] 961165 963716 "+" ["EV-EXP-IMP-POLAR-MUTATION"] "TU362" "ybgA-phr" ["EG10736", "EG11108"] 738980 740925 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU363" "napFDAGHBC-ccmABCDEFGH" ["EG12052", "EG12053", "EG12054", "EG12055", "EG12169", "EG12057", "EG12058", "EG12059", "EG12060", "EG12061", "EG12062", "EG12064", "EG12067", "EG12143", "EG12068"] 2291358 2303577 "-" [] -"TU365" "phr" ["EG10736"] 739354 740925 "+" [] +"TU365" "phr" ["EG10736"] 739421 740925 "+" [] "TU368" "plaR" ["EG12278"] 3741684 3742618 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU369" "gadBC" ["G6786", "EG11490"] 1568904 1572072 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU4" "paaZ" ["G6708"] 1451597 1453670 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] @@ -3628,43 +3652,43 @@ "TU441" "acpP-fabF" ["EG12606", "EG50003"] 1151575 1153180 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU442" "fabDG-acpP" ["EG50003", "EG11318", "EG11317"] 1149728 1151851 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU443" "fabG-acpP" ["EG50003", "EG11318"] 1150670 1151851 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU461" "dadAX" ["EG11408", "EG11407"] 1237457 1239949 "+" ["EV-EXP-IEP-COREGULATION", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] -"TU462" "dadAX" ["EG11408", "EG11407"] 1237457 1239949 "+" ["EV-EXP-IEP-COREGULATION", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU461" "dadAX" ["EG11408", "EG11407"] 1237509 1239949 "+" ["EV-EXP-IEP-COREGULATION", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] +"TU462" "dadAX" ["EG11408", "EG11407"] 1237538 1239949 "+" ["EV-EXP-IEP-COREGULATION", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU482" "garPLRK-rnpB" ["EG30069", "EG11175", "EG11176", "EG10016", "EG12760"] 3269959 3274934 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU483" "rnc-era-recO-pdxJ-acpS" ["EG10247", "EG10693", "EG10832", "EG10270", "EG10857"] 2700618 2704223 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU484" "pdxJ-acpS" ["EG10247", "EG10693"] 2700618 2701813 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU486" "hupA" ["EG10466"] 4199921 4200601 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU486" "hupA" ["EG10466"] 4200176 4200601 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU487" "hupB" ["EG10467"] 461442 461778 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU488" "hupB" ["EG10467"] 461187 461778 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU489" "hupB" ["EG10467"] 461187 461778 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU488" "hupB" ["EG10467"] 461395 461778 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU489" "hupB" ["EG10467"] 461332 461778 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU490" "hupB" ["EG10467"] 461305 461778 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU491" "xseA" ["EG11072"] 2634197 2635602 "+" [] -"TU5" "paaABCDEFGHIJK" ["G6719", "G6718", "G6717", "G6716", "G6715", "G6714", "G6713", "G6712", "G6711", "G6710", "G6709"] 1453750 1463438 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP", "EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION"] +"TU5" "paaABCDEFGHIJK" ["G6719", "G6718", "G6717", "G6716", "G6715", "G6714", "G6713", "G6712", "G6711", "G6710", "G6709"] 1453865 1463438 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP", "EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION"] "TU501" "feaR" ["G6706"] 1446378 1447367 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU502" "cfa" ["EG11531"] 1741201 1742561 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU503" "cfa" ["EG11531"] 1741379 1742561 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU521" "relA-mazEF" ["EG11249", "EG10571", "EG10835"] 2910756 2913829 "-" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP"] "TU522" "mazEFG" ["EG10572", "EG11249", "EG10571"] 2909894 2911368 "-" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS"] "TU523" "mazEFG" ["EG10572", "EG11249", "EG10571"] 2909894 2911355 "-" ["EV-EXP-IEP-COREGULATION", "EV-IC-ADJ-GENES-SAME-BIO-PROCESS", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU524" "ilvLXG_1G_2MEDA" ["G0-10641", "G8221", "EG10493", "EG10496", "EG10497", "EG10501", "EG11270"] 3950201 3957123 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU525" "ilvLXG_1G_2MEDA" ["G0-10641", "G8221", "EG10493", "EG10496", "EG10497", "EG10501", "EG11270"] 3950201 3957123 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU524" "ilvLXG_1G_2MEDA" ["G0-10641", "G8221", "EG10493", "EG10496", "EG10497", "EG10501", "EG11270"] 3950218 3957123 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU525" "ilvLXG_1G_2MEDA" ["G0-10641", "G8221", "EG10493", "EG10496", "EG10497", "EG10501", "EG11270"] 3950290 3957123 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU526" "ilvEDA" ["EG10493", "EG10496", "EG10497"] 3952388 3957123 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU541" "poxB" ["EG10754"] 909331 911076 "-" ["EV-EXP-IEP"] "TU542" "xthA" ["EG11073"] 1832399 1833234 "+" ["EV-COMP-AINF"] "TU543" "rnpB" ["EG30069"] 3269962 3270592 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU544" "tpx" ["G6660"] 1388305 1388844 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU546" "adhE" ["EG10031"] 1295446 1298309 "-" [] -"TU561" "pqiABC" ["G6492", "G6491", "G6490"] 1011623 1015459 "+" ["EV-EXP-IMP-POLAR-MUTATION"] +"TU561" "pqiABC" ["G6492", "G6491", "G6490"] 1011666 1015459 "+" ["EV-EXP-IMP-POLAR-MUTATION"] "TU562" "pqiABC" ["G6492", "G6491", "G6490"] 1011659 1015459 "+" ["EV-EXP-IMP-POLAR-MUTATION"] "TU564" "rpsA-ihfB" ["EG10441", "EG10900"] 961717 964173 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU565" "rpsA-ihfB" ["EG10441", "EG10900"] 961859 964173 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU581" "hlyE" ["G6619"] 1229483 1230466 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU582" "rnb" ["EG11620"] 1346942 1349129 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU583" "rnb" ["EG11620"] 1346942 1348944 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU584" "degP" ["EG10463"] 180622 182308 "+" ["EV-COMP-AINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU584" "degP" ["EG10463"] 180845 182308 "+" ["EV-COMP-AINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU586" "gadAX" ["EG12243", "EG50009"] 3664915 3667607 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU587" "glnK-amtB" ["EG11821", "EG12191"] 472469 474301 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU592" "yiaKLMNO-lyx-sgbHUE" ["EG12281", "EG12287", "EG12286", "EG12285", "EG12284", "EG12283", "EG12282", "EG12280", "EG12279"] 3742568 3750781 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU587" "glnK-amtB" ["EG11821", "EG12191"] 472556 474301 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU592" "yiaKLMNO-lyx-sgbHUE" ["EG12281", "EG12287", "EG12286", "EG12285", "EG12284", "EG12283", "EG12282", "EG12280", "EG12279"] 3742674 3750781 "+" ["EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU593" "dnaAN-recF" ["EG10828", "EG10242", "EG10235"] 3880148 3883882 "-" [] "TU601" "yceD-rpmF" ["EG10890", "EG11119"] 1146649 1147540 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU602" "yceD-rpmF" ["EG10890", "EG11119"] 1146791 1147540 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] @@ -3673,48 +3697,48 @@ "TU641" "aroP" ["EG10084"] 120144 121650 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-COMP-AINF-SINGLE-DIRECTON"] "TU65" "nac" ["G7072"] 2061016 2061978 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU66" "phoPQ" ["EG10732", "EG10731"] 1188316 1190508 "-" [] -"TU661" "polA" ["EG10746"] 4046839 4049752 "+" ["EV-COMP-AINF"] +"TU661" "polA" ["EG10746"] 4046940 4049752 "+" ["EV-COMP-AINF"] "TU67" "xylAB" ["EG11075", "EG11074"] 3727917 3730807 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IEP-COREGULATION"] "TU68" "xylR" ["EG20253"] 3734906 3736157 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU681" "hmp" ["EG10456"] 2685797 2687025 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-COMP-AINF-SINGLE-DIRECTON"] "TU682" "rpmH-rnpA" ["EG10862", "EG10892"] 3884237 3884852 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU684" "torYZ" ["G7022", "G7023"] 1954578 1958132 "-" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP"] "TU685" "nikR" ["EG11519"] 3618537 3618989 "+" [] -"TU686" "hyfABCDEFGHIJR-focB" ["G7309", "G7308", "G7307", "G7306", "G7305", "G7304", "G7303", "G7302", "G7301", "G7300", "EG11282", "EG11150"] 2601010 2614782 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP", "EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU686" "hyfABCDEFGHIJR-focB" ["G7309", "G7308", "G7307", "G7306", "G7305", "G7304", "G7303", "G7302", "G7301", "G7300", "EG11282", "EG11150"] 2601171 2614782 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU7" "paaXY" ["G6721", "G6720"] 1463509 1465061 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU701" "proVWX" ["EG10773", "EG10772", "EG10771"] 2804563 2808124 "+" ["EV-EXP-IMP-POLAR-MUTATION"] -"TU702" "proVWX" ["EG10773", "EG10772", "EG10771"] 2804722 2808124 "+" ["EV-EXP-IMP-POLAR-MUTATION"] +"TU702" "proVWX" ["EG10773", "EG10772", "EG10771"] 2804755 2808124 "+" ["EV-EXP-IMP-POLAR-MUTATION"] "TU704" "proVWX" ["EG10773", "EG10772", "EG10771"] 2804599 2808124 "+" [] "TU721" "grxA" ["EG10417"] 890496 890776 "-" [] "TU723" "mutS" ["EG10625"] 2857019 2859654 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IMP-POLAR-MUTATION", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU743" "rpmH-rnpA" ["EG10862", "EG10892"] 3884065 3884852 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU781" "cedA" ["G6936"] 1813421 1813742 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU782" "zraP" ["EG11918"] 4201263 4201712 "-" [] -"TU783" "zraSR" ["EG10482", "EG10008"] 4201681 4204645 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP"] +"TU783" "zraSR" ["EG10482", "EG10008"] 4201905 4204645 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP"] "TU784" "rsd" ["EG11738"] 4196332 4196954 "-" ["EV-COMP-AINF"] "TU787" "rsd" ["EG11738"] 4196332 4196859 "-" ["EV-COMP-AINF"] -"TU788" "pfkA" ["EG10699"] 4107438 4108732 "+" ["EV-COMP-AINF"] +"TU788" "pfkA" ["EG10699"] 4107474 4108732 "+" ["EV-COMP-AINF"] "TU789" "mlc" ["G6852"] 1667344 1668603 "-" ["EV-COMP-AINF"] "TU790" "mlc-ynfK" ["G6851", "G6852"] 1666524 1668591 "-" ["EV-COMP-AINF", "EV-EXP-IEP-COREGULATION"] "TU791" "xapR" ["EG11146"] 2521334 2522505 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU792" "xapR" ["EG11146"] 2521334 2522563 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU793" "torR" ["EG12615"] 1057262 1057984 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] -"TU794" "acnA" ["EG11325"] 1335740 1338506 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU794" "acnA" ["EG11325"] 1335781 1338506 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU795" "acnA" ["G0-16736", "EG11325"] 1335424 1338506 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU796" "acnB" ["EG12316"] 131347 134272 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU797" "spf" ["EG30098"] 4049814 4050016 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] +"TU796" "acnB" ["EG12316"] 131519 134272 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU797" "spf-spfP" ["G0-17114", "EG30098"] 4049899 4050016 "+" ["EV-COMP-AINF-SINGLE-DIRECTON"] "TU801" "yjeFE-amiB-mutL-miaA-hfq-hflXKC" ["EG10435", "EG10436", "EG10437", "EG10438", "EG10595", "EG11281", "EG11363", "EG11757", "EG11758"] 4393937 4404304 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU802" "yjeFE-amiB-mutL-miaA-hfq-hflXKC" ["EG10435", "EG10436", "EG10437", "EG10438", "EG10595", "EG11281", "EG11363", "EG11757", "EG11758"] 4394035 4404304 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU821" "adiY" ["EG11966"] 4337168 4338042 "-" ["EV-COMP-AINF"] -"TU841" "cdd" ["EG10137"] 2231724 2232728 "+" ["EV-COMP-AINF"] -"TU861" "yeiL" ["EG12031"] 2255063 2256014 "+" [] +"TU841" "cdd" ["EG10137"] 2231819 2232728 "+" ["EV-COMP-AINF"] +"TU861" "yeiL" ["EG12031"] 2255290 2256014 "+" [] "TU862" "rihB" ["EG12030"] 2254245 2255252 "-" ["EV-COMP-AINF"] "TU863" "clsA-yciU" ["G6633", "EG11608"] 1306821 1308673 "-" ["EV-COMP-AINF"] -"TU864" "phoH" ["EG11734"] 1084834 1086095 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU864" "phoH" ["EG11734"] 1084865 1086095 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU866" "phoH" ["EG11734"] 1084938 1086095 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU869" "yajC-secDF" ["EG10940", "EG10938", "EG11096"] 427205 430476 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU870" "tgt-yajC" ["EG11096", "EG10996"] 426055 427786 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU871" "queA" ["EG10812"] 424927 426081 "+" [] +"TU871" "queA" ["EG10812"] 424985 426081 "+" [] "TU872" "aroKB-damX-dam-rpe-gph-trpS" ["EG11030", "EG11871", "M004", "EG10204", "EG11183", "EG10074", "EG10081"] 3512634 3519380 "-" ["EV-EXP-IMP-POLAR-MUTATION"] "TU873" "aroKB-damX-dam-rpe-gph-trpS" ["EG11030", "EG11871", "M004", "EG10204", "EG11183", "EG10074", "EG10081"] 3512634 3519167 "-" ["EV-EXP-IMP-POLAR-MUTATION"] "TU874" "damX-dam-rpe-gph-trpS" ["EG11030", "EG11871", "M004", "EG10204", "EG11183"] 3512634 3517600 "-" ["EV-EXP-IMP-POLAR-MUTATION"] diff --git a/reconstruction/ecoli/flat/transcription_units_removed.tsv b/reconstruction/ecoli/flat/transcription_units_removed.tsv index 1040270c6..bc6216946 100644 --- a/reconstruction/ecoli/flat/transcription_units_removed.tsv +++ b/reconstruction/ecoli/flat/transcription_units_removed.tsv @@ -42,15 +42,24 @@ "TU00524" "Transcription unit type not supported (mRNA-miscRNA)" "TU341" "Transcription unit type not supported (mRNA-tRNA)" "TU482" "Transcription unit type not supported (mRNA-miscRNA)" +"TU797" "Transcription unit type not supported (mRNA-miscRNA)" "TU0-14767" "Transcription unit type not supported (mRNA-miscRNA)" "TU0-5901" "Transcription unit type not supported (mRNA-miscRNA)" "TU0-5903" "Transcription unit type not supported (mRNA-miscRNA)" "TU00027" "Transcription unit type not supported (mRNA-miscRNA)" "TU00029" "Transcription unit type not supported (mRNA-miscRNA)" +"TU00206" "Transcription unit type not supported (mRNA-miscRNA)" "TU182" "Transcription unit type not supported (mRNA-miscRNA)" "TU0-198710" "Transcription unit type not supported (mRNA-miscRNA)" +"TU0-13654" "Transcription unit type not supported (mRNA-miscRNA)" +"TU0-14439" "Transcription unit type not supported (mRNA-miscRNA)" +"TU0-14443" "Transcription unit type not supported (mRNA-miscRNA)" +"TU0-14445" "Transcription unit type not supported (mRNA-miscRNA)" +"TU0-941" "Transcription unit type not supported (mRNA-miscRNA)" "TU0-14510" "Non-canonical rRNA transcription unit" "TU0-14524" "Non-canonical rRNA transcription unit" "TU0-14528" "Non-canonical rRNA transcription unit" "TU0-14530" "Non-canonical rRNA transcription unit" "TU0-14533" "Non-canonical rRNA transcription unit" +"TU0-4242" "Transcription unit ends before gene does" +"TU0-8513" "Transcription unit ends before gene does" diff --git a/reconstruction/ecoli/flat/trna_charging_reactions.tsv b/reconstruction/ecoli/flat/trna_charging_reactions.tsv index 1b41cfb3e..b22864d5f 100644 --- a/reconstruction/ecoli/flat/trna_charging_reactions.tsv +++ b/reconstruction/ecoli/flat/trna_charging_reactions.tsv @@ -1,7 +1,7 @@ # Organism: Escherichia coli K-12 substr. MG1655 # Database: EcoCyc -# Version: 28.0 -# Date and time generated: October 30, 2023, 10:07:22 +# Version: 28.1 +# Date and time generated: March 7, 2024, 13:56:53 "id" "stoichiometry" "catalyzed_by" "common_name" "ALANINE--TRNA-LIGASE-RXN_alaT-tRNA" {"L-ALPHA-ALANINE": -1, "ATP": -1, "alaT-tRNA": -1, "PPI": 1, "AMP": 1, "charged-alaT-tRNA": 1} ["ALAS-CPLX"] "ALANYL-TRNA SYNTHETASE" "ALANINE--TRNA-LIGASE-RXN_alaU-tRNA" {"L-ALPHA-ALANINE": -1, "ATP": -1, "alaU-tRNA": -1, "PPI": 1, "AMP": 1, "charged-alaU-tRNA": 1} ["ALAS-CPLX"] "ALANYL-TRNA SYNTHETASE" From 9b27fa563dc0283718e506e786b0a3b7da17a0c8 Mon Sep 17 00:00:00 2001 From: Riley Juenemann <39416387+rjuenemann@users.noreply.github.com> Date: Tue, 16 Apr 2024 12:59:34 -0700 Subject: [PATCH 15/34] Activate fewer ribosomes to resolve overcrowding if rescaling fails (#1446) * initial implementation of activating fewer ribosomes (if needed) * initial implementation for inter ribosome distance analysis * change estimation of number of RNA init events per copy * change estimation of number of ribosomes per cistron * add more print statements for analyzing impact of activating fewer ribos * move setting protein init prob for overcrowded proteins inside rescaling check * add ppgpp_concentration single analysis plot * add comments to single ppgpp conc plot * remove debugging statements from process that activates fewer ribosomes * add listener for whether n active ribos had to be reduced to prevent crowding * change mRNA_is_overcrowded listener to bool data type * change tu_is_overcrowded listener initialization to bool * add marker for monomers with close ribosomes but low cistron counts --- .../single/inter_ribosome_distance.py | 122 ++++++++++++++++++ .../analysis/single/inter_rnap_distance.py | 7 +- .../analysis/single/ppgpp_concentration.py | 34 +++++ models/ecoli/listeners/ribosome_data.py | 4 +- models/ecoli/listeners/rna_synth_prob.py | 2 +- .../ecoli/processes/polypeptide_initiation.py | 52 ++++++-- 6 files changed, 206 insertions(+), 15 deletions(-) create mode 100644 models/ecoli/analysis/single/inter_ribosome_distance.py create mode 100644 models/ecoli/analysis/single/ppgpp_concentration.py diff --git a/models/ecoli/analysis/single/inter_ribosome_distance.py b/models/ecoli/analysis/single/inter_ribosome_distance.py new file mode 100644 index 000000000..f84a95460 --- /dev/null +++ b/models/ecoli/analysis/single/inter_ribosome_distance.py @@ -0,0 +1,122 @@ +""" +Computes the average distance between translating ribosomes for each +mRNA, and compares the distance to the known size of the +molecular footprint of ribosomes. +""" + +import os +import pickle + +from matplotlib import pyplot as plt +import numpy as np + +from models.ecoli.analysis import singleAnalysisPlot +from wholecell.analysis.analysis_tools import exportFigure +from wholecell.io.tablereader import TableReader +from wholecell.utils import units + + +SAMPLE_SIZE = 25 # Number of genes to plot + + +class Plot(singleAnalysisPlot.SingleAnalysisPlot): + _suppress_numpy_warnings = True + + def do_plot(self, simOutDir, plotOutDir, plotOutFileName, simDataFile, validationDataFile, metadata): + with open(simDataFile, 'rb') as f: + sim_data = pickle.load(f) + + # Get ribosome footprint size + ribosome_footprint_size = sim_data.process.translation.active_ribosome_footprint_size.asNumber(units.nt) + + # Listeners used + main_reader = TableReader(os.path.join(simOutDir, 'Main')) + ribosome_data_reader = TableReader(os.path.join(simOutDir, 'RibosomeData')) + mRNA_counts_reader = TableReader(os.path.join(simOutDir, 'RNACounts')) + monomer_counts_reader = TableReader(os.path.join(simOutDir, 'MonomerCounts')) + + # Load data + initial_time = main_reader.readAttribute('initialTime') + time = (units.s)*(main_reader.readColumn('time') - initial_time) + ribosome_init_event_per_monomer = ribosome_data_reader.readColumn('ribosome_init_event_per_monomer') + cistron_counts = mRNA_counts_reader.readColumn('mRNA_cistron_counts') + monomer_ids = monomer_counts_reader.readAttribute('monomerIds') + + # Map monomer ids to cistron indices + monomer_sim_data = sim_data.process.translation.monomer_data.struct_array + monomer_to_cistron_id_dict = dict( + zip(monomer_sim_data['id'], monomer_sim_data['cistron_id'])) + cistron_idx_dict = {rna: i for i, rna in + enumerate(mRNA_counts_reader.readAttribute('mRNA_cistron_ids'))} + cistron_indices_for_monomers = [ + cistron_idx_dict[monomer_to_cistron_id_dict[monomer_id]] + for monomer_id in monomer_ids] + cistron_counts_for_monomers = cistron_counts[:, cistron_indices_for_monomers] + + # Get ribosome elongation rate for this sim condition + nutrients = sim_data.conditions[sim_data.condition]["nutrients"] + ribosome_elong_rate = sim_data.process.translation.ribosomeElongationRateDict[nutrients] + + # Calculate the total number of initiation events that happen to each + # transcript per mRNA throughout the cell cycle + sum_ribosome_init_event_per_monomer = ( + ribosome_init_event_per_monomer[1:, :].astype(np.float64).sum(axis=0)) + avg_cistron_count_per_monomer = np.mean( + cistron_counts_for_monomers[1:, :], axis=0) + n_total_ribosome_init_events_per_mRNA = ( + sum_ribosome_init_event_per_monomer / avg_cistron_count_per_monomer) + + # Data filtering + mask = np.logical_and( + (sum_ribosome_init_event_per_monomer >= 10), # filter out monomers with few ribosome init events + (avg_cistron_count_per_monomer > 0)) # filter out monomers with no cistrons + n_total_ribosome_init_events_per_mRNA_filtered = n_total_ribosome_init_events_per_mRNA[mask] + monomer_ids_filtered = np.array(monomer_ids)[mask] + + # Divide by length of cell cycle to get average initiation rate + avg_init_rate = (1. / time[-1]) * n_total_ribosome_init_events_per_mRNA_filtered + + # Divide elongation rate with initiation rate to get average distance + # between ribosomes in nucleotides + avg_inter_ribosome_distance = ( + ribosome_elong_rate / avg_init_rate).asNumber(units.nt) + + # Sort from shortest to longest + sorted_index = avg_inter_ribosome_distance.argsort() + sorted_monomer_ids = np.array([monomer_ids_filtered[i] for i in sorted_index]) + avg_inter_ribosome_distance.sort() + + # Mark genes with ribosomes that are too close to each other + n_too_close = ( + avg_inter_ribosome_distance[:SAMPLE_SIZE] < ribosome_footprint_size).sum() + bar_colors = ["r"]*n_too_close + ["b"]*(SAMPLE_SIZE - n_too_close) + + # Add an asterisk before the name of any mononomers that + # have ribosomes too close together and also have a small number of + # cistrons. This is to highlight that the average distance between + # ribosomes is not statistically representative for these monomers. + low_cistron_counts_and_too_close = ( + avg_cistron_count_per_monomer[sorted_index][:n_too_close] < 20) + sorted_monomer_ids[:n_too_close][low_cistron_counts_and_too_close] = np.char.add( + '* ', sorted_monomer_ids[:n_too_close][low_cistron_counts_and_too_close]) + + # Plot the first n monomers with shortest distances + plt.figure(figsize=(8, 6)) + plt.barh(np.arange(SAMPLE_SIZE), avg_inter_ribosome_distance[:SAMPLE_SIZE], + tick_label=sorted_monomer_ids[:SAMPLE_SIZE], + color=bar_colors) + plt.xlabel("Average distance between ribosomes (nt)") + plt.axvline(ribosome_footprint_size, linestyle='--', color='k') + + # Add values to each bar + for i, v in enumerate(avg_inter_ribosome_distance[:SAMPLE_SIZE]): + if np.isfinite(v): + plt.text(v - 1, i, "{0:.1f}".format(v), color='white', fontsize=5, + horizontalalignment='right', verticalalignment='center') + + plt.tight_layout() + exportFigure(plt, plotOutDir, plotOutFileName, metadata) + plt.close('all') + +if __name__ == '__main__': + Plot().cli() diff --git a/models/ecoli/analysis/single/inter_rnap_distance.py b/models/ecoli/analysis/single/inter_rnap_distance.py index d5e1ac718..4369c54e0 100644 --- a/models/ecoli/analysis/single/inter_rnap_distance.py +++ b/models/ecoli/analysis/single/inter_rnap_distance.py @@ -47,10 +47,9 @@ def do_plot(self, simOutDir, plotOutDir, plotOutFileName, simDataFile, validatio # Calculate the total number of initiation events that happen to each # gene per gene copy throughout the cell cycle - n_total_rna_init_events_per_copy = np.divide( - n_rna_init_events[1:, :].astype(np.float64), - promoter_copy_numbers[1:, :] - ).sum(axis=0) + sum_n_rna_init_events = n_rna_init_events[1:, :].astype(np.float64).sum(axis=0) + avg_promoter_copy_number = np.mean(promoter_copy_numbers[1:, :], axis=0) + n_total_rna_init_events_per_copy = sum_n_rna_init_events / avg_promoter_copy_number # Divide by length of cell cycle to get average initiation rate avg_init_rate = (1./time[-1])*n_total_rna_init_events_per_copy diff --git a/models/ecoli/analysis/single/ppgpp_concentration.py b/models/ecoli/analysis/single/ppgpp_concentration.py new file mode 100644 index 000000000..792427dc3 --- /dev/null +++ b/models/ecoli/analysis/single/ppgpp_concentration.py @@ -0,0 +1,34 @@ +""" +Plot ppGpp concentration +""" +import os + +from matplotlib import pyplot as plt + +from models.ecoli.analysis import singleAnalysisPlot +from wholecell.analysis.analysis_tools import exportFigure +from wholecell.io.tablereader import TableReader + + +class Plot(singleAnalysisPlot.SingleAnalysisPlot): + def do_plot(self, simOutDir, plotOutDir, plotOutFileName, simDataFile, validationDataFile, metadata): + # Listeners used + main_reader = TableReader(os.path.join(simOutDir, 'Main')) + growth_limits_reader = TableReader(os.path.join(simOutDir, 'GrowthLimits')) + + # Load data + initial_time = main_reader.readAttribute('initialTime') + time = main_reader.readColumn('time') - initial_time + ppgpp_concentration = growth_limits_reader.readColumn('ppgpp_conc') + + # Create Plot + plt.figure() + plt.plot(time / 60., ppgpp_concentration, label='ppGpp concentration') + plt.xlabel('Time (min)') + plt.ylabel('ppGpp concentration (uM)') + plt.tight_layout() + exportFigure(plt, plotOutDir, plotOutFileName, metadata) + plt.close('all') + +if __name__ == '__main__': + Plot().cli() diff --git a/models/ecoli/listeners/ribosome_data.py b/models/ecoli/listeners/ribosome_data.py index d8d11bed6..825f84169 100644 --- a/models/ecoli/listeners/ribosome_data.py +++ b/models/ecoli/listeners/ribosome_data.py @@ -67,7 +67,8 @@ def allocate(self): np.float64) self.actual_prob_translation_per_transcript = np.zeros(self.nMonomers, np.float64) - self.mRNA_is_overcrowded = np.zeros(self.nMonomers, np.float64) + self.mRNA_is_overcrowded = np.zeros(self.nMonomers, bool) + self.is_n_ribosomes_to_activate_reduced = False self.ribosome_init_event_per_monomer = np.zeros(self.nMonomers, np.int64) @@ -185,4 +186,5 @@ def tableAppend(self, tableWriter): n_ribosomes_on_each_mRNA = self.n_ribosomes_on_each_mRNA, mRNA_TU_index = self.mRNA_TU_index, protein_mass_on_polysomes = self.protein_mass_on_polysomes, + is_n_ribosomes_to_activate_reduced = self.is_n_ribosomes_to_activate_reduced, ) diff --git a/models/ecoli/listeners/rna_synth_prob.py b/models/ecoli/listeners/rna_synth_prob.py index 4ec708c47..3a4b6f77c 100644 --- a/models/ecoli/listeners/rna_synth_prob.py +++ b/models/ecoli/listeners/rna_synth_prob.py @@ -43,7 +43,7 @@ def allocate(self): self.target_rna_synth_prob = np.zeros(self.n_TU, np.float64) self.actual_rna_synth_prob = np.zeros(self.n_TU, np.float64) - self.tu_is_overcrowded = np.zeros(self.n_TU, np.float64) + self.tu_is_overcrowded = np.zeros(self.n_TU, bool) self.promoter_copy_number = np.zeros(self.n_TU, np.int16) self.rna_synth_prob_per_cistron = np.zeros(self.n_cistron, np.float64) self.total_rna_init = 0 diff --git a/models/ecoli/processes/polypeptide_initiation.py b/models/ecoli/processes/polypeptide_initiation.py index 1fabf1066..5a56daa7a 100755 --- a/models/ecoli/processes/polypeptide_initiation.py +++ b/models/ecoli/processes/polypeptide_initiation.py @@ -158,16 +158,47 @@ def evolveState(self): max_p_per_protein = max_p*cistron_counts[self.cistron_to_monomer_mapping] is_overcrowded = (protein_init_prob > max_p_per_protein) + # Initalize flag to record if the number of ribosomes activated at this + # time step needed to be reduced to prevent overcrowding + is_n_ribosomes_to_activate_reduced = False + + # If needed, resolve overcrowding while np.any(protein_init_prob > max_p_per_protein): - protein_init_prob[is_overcrowded] = max_p_per_protein[ - is_overcrowded] - assert protein_init_prob[~is_overcrowded].sum() != 0 - scale_the_rest_by = ( - (1. - protein_init_prob[is_overcrowded].sum()) - / protein_init_prob[~is_overcrowded].sum() - ) - protein_init_prob[~is_overcrowded] *= scale_the_rest_by - is_overcrowded |= (protein_init_prob > max_p_per_protein) + if protein_init_prob[~is_overcrowded].sum() != 0: + # Resolve overcrowding through rescaling (preferred) + protein_init_prob[is_overcrowded] = max_p_per_protein[ + is_overcrowded] + scale_the_rest_by = ( + (1. - protein_init_prob[is_overcrowded].sum()) + / protein_init_prob[~is_overcrowded].sum()) + protein_init_prob[~is_overcrowded] *= scale_the_rest_by + is_overcrowded |= (protein_init_prob > max_p_per_protein) + else: + # If we cannot resolve the overcrowding through rescaling, + # we need to activate fewer ribosomes. Set the number of + # ribosomes to activate so that there will be no overcrowding. + is_n_ribosomes_to_activate_reduced = True + max_index = np.argmax( + protein_init_prob[is_overcrowded] / max_p_per_protein[is_overcrowded]) + max_init_prob = protein_init_prob[is_overcrowded][max_index] + associated_cistron_counts = cistron_counts[ + self.cistron_to_monomer_mapping][is_overcrowded][max_index] + n_ribosomes_to_activate = np.int64(( + self.ribosomeElongationRate + / self.active_ribosome_footprint_size + * (units.s) * self.timeStepSec() / max_init_prob + * associated_cistron_counts).asNumber()) + + # Update maximum probabilities based on new number of activated + # ribosomes. + max_p = ( + self.ribosomeElongationRate + / self.active_ribosome_footprint_size + * (units.s) * self.timeStepSec() + / n_ribosomes_to_activate).asNumber() + max_p_per_protein = max_p * cistron_counts[self.cistron_to_monomer_mapping] + is_overcrowded = (protein_init_prob > max_p_per_protein) + assert is_overcrowded.sum() == 0 # We expect no overcrowding # Compute actual transcription probabilities of each transcript actual_protein_init_prob = protein_init_prob.copy() @@ -176,6 +207,9 @@ def evolveState(self): actual_protein_init_prob) self.writeToListener( "RibosomeData", "mRNA_is_overcrowded", is_overcrowded) + self.writeToListener( + "RibosomeData", "is_n_ribosomes_to_activate_reduced", + is_n_ribosomes_to_activate_reduced) # Sample multinomial distribution to determine which mRNAs have full # 70S ribosomes initialized on them From b7abeb0d6867b46d7311df18cafeba3e6123aa8a Mon Sep 17 00:00:00 2001 From: Gwanggyu Sun <32276711+ggsun@users.noreply.github.com> Date: Wed, 17 Apr 2024 22:30:13 -0700 Subject: [PATCH 16/34] Add multigen plot for components involved in rRNA regulation (#1447) --- models/ecoli/analysis/multigen/__init__.py | 1 + .../analysis/multigen/rrna_regulation.py | 246 ++++++++++++++++++ 2 files changed, 247 insertions(+) create mode 100644 models/ecoli/analysis/multigen/rrna_regulation.py diff --git a/models/ecoli/analysis/multigen/__init__.py b/models/ecoli/analysis/multigen/__init__.py index 1f418c346..5ee18d15a 100644 --- a/models/ecoli/analysis/multigen/__init__.py +++ b/models/ecoli/analysis/multigen/__init__.py @@ -46,6 +46,7 @@ "rna_decay_03_high.py", "rnap_crowding.py", "rRNA_operon_expression.py", + "rrna_regulation.py", "subgenerationalTranscription.py", "tf_binding.py", "timeStep.py", diff --git a/models/ecoli/analysis/multigen/rrna_regulation.py b/models/ecoli/analysis/multigen/rrna_regulation.py new file mode 100644 index 000000000..dbb553d98 --- /dev/null +++ b/models/ecoli/analysis/multigen/rrna_regulation.py @@ -0,0 +1,246 @@ +""" +Plots timetraces of components in the model related to rRNA regulation. +""" + +import pickle +import os + +from matplotlib import pyplot as plt +# noinspection PyUnresolvedReferences +import numpy as np + +from models.ecoli.analysis import multigenAnalysisPlot +from wholecell.analysis.analysis_tools import (exportFigure, + read_stacked_bulk_molecules, read_stacked_columns) +from wholecell.io.tablereader import TableReader +from wholecell.utils import units + + +COMPLEXATION_RXN_IDS = ['CPLX0-3953_RXN', 'CPLX0-3962_RXN'] + +class Plot(multigenAnalysisPlot.MultigenAnalysisPlot): + def do_plot(self, seedOutDir, plotOutDir, plotOutFileName, simDataFile, validationDataFile, metadata): + with open(simDataFile, 'rb') as f: + sim_data = pickle.load(f) + + # Load from sim_data + transcription = sim_data.process.transcription + uncharged_trna_names = transcription.uncharged_trna_names + charged_trna_names = transcription.charged_trna_names + aa_from_trna = transcription.aa_from_trna.T + aa_names = sim_data.molecule_groups.amino_acids + trp_index = aa_names.index('TRP[c]') + + cell_paths = self.ap.get_cells() + + # Load data + time = read_stacked_columns( + cell_paths, 'Main', 'time', remove_first=True).flatten() + gen_start_times = read_stacked_columns( + cell_paths, 'Main', 'time', remove_first=True, + fun=lambda x: x[0]).flatten() + + # Get rna_ids attribute from RnaSynthProb table in reference cell path + reference_cell_path = cell_paths[0] + sim_out_dir = os.path.join(reference_cell_path, 'simOut') + rna_synth_prob_reader = TableReader( + os.path.join(sim_out_dir, 'RnaSynthProb')) + rna_ids = rna_synth_prob_reader.readAttribute('rnaIds') + + # Get indexes of rRNAs in RnaSynthProb table + rna_id_to_is_rRNA = { + rna['id']: rna['is_rRNA'] for rna in transcription.rna_data + } + rrna_indexes_rna_synth_prob = np.array([ + i for (i, rna_id) in enumerate(rna_ids) + if rna_id_to_is_rRNA[rna_id] + ]) + + # Get reactionIDs attribute from ComplexationListener table + complexation_reader = TableReader( + os.path.join(sim_out_dir, 'ComplexationListener')) + reaction_ids = complexation_reader.readAttribute('reactionIDs') + + # Get indexes of ribosomal subunit complexation reactions in + # ComplexationListener table + subunit_complexation_rxn_indexes = np.array([ + reaction_ids.index(rxn_id) for rxn_id in COMPLEXATION_RXN_IDS + ]) + + # Get rna_ids attribute from RnapData table in reference cell path + rna_synth_prob_reader = TableReader( + os.path.join(sim_out_dir, 'RnapData')) + rna_ids = rna_synth_prob_reader.readAttribute('rnaIds') + + # Get indexes of rRNAs in RnapData table + rna_id_to_is_rRNA = { + rna['id']: rna['is_rRNA'] for rna in transcription.rna_data + } + rrna_indexes_rnap_data = np.array([ + i for (i, rna_id) in enumerate(rna_ids) + if rna_id_to_is_rRNA[rna_id] + ]) + + # Get index of active ribosomes in the unique molecule counts reader + unique_molecule_counts_reader = TableReader( + os.path.join(cell_paths[0], 'simOut', 'UniqueMoleculeCounts')) + unique_molecule_ids = unique_molecule_counts_reader.readAttribute( + 'uniqueMoleculeIds') + active_ribosome_idx = unique_molecule_ids.index('active_ribosome') + + # Get summed rRNA synthesis probabilities + rrna_synthesis_probs = read_stacked_columns( + cell_paths, 'RnaSynthProb', 'actual_rna_synth_prob', + remove_first=True, fun=lambda x: x[:, rrna_indexes_rna_synth_prob]) + rrna_synthesis_probs = rrna_synthesis_probs.sum(axis=1) + + # Get summed rRNA copy numbers + rrna_copy_numbers = read_stacked_columns( + cell_paths, 'RnaSynthProb', 'promoter_copy_number', + remove_first=True, fun=lambda x: x[:, rrna_indexes_rna_synth_prob]) + rrna_copy_numbers = rrna_copy_numbers.sum(axis=1) + + # Get summed rRNA initiation event counts + rrna_init_events = read_stacked_columns( + cell_paths, 'RnapData', 'rnaInitEvent', + remove_first=True, fun=lambda x: x[:, rrna_indexes_rnap_data]) + rrna_init_events = rrna_init_events.sum(axis=1) + + # Get number of ribosomal subunit complexation events + ribosome_complexation_events = read_stacked_columns( + cell_paths, 'ComplexationListener', 'complexationEvents', + remove_first=True, fun=lambda x: x[:, subunit_complexation_rxn_indexes]) + ribosome_complexation_events = ribosome_complexation_events.sum(axis=1) + + # Get counts of active ribosomes + unique_molecule_counts = read_stacked_columns( + cell_paths, 'UniqueMoleculeCounts', 'uniqueMoleculeCounts', + remove_first=True) + active_ribosome_counts = unique_molecule_counts[:, active_ribosome_idx] + + # Get counts of imported amino acids + imported_aas = read_stacked_columns( + cell_paths, 'GrowthLimits', 'aa_import', remove_first=True) + imported_aas = imported_aas.sum(axis=1) + + # Get counts of translated amino acids + translated_aas = read_stacked_columns( + cell_paths, 'RibosomeData', 'actualElongations', + remove_first=True).squeeze() + + # Get fraction of charged leucine tRNAs + (uncharged_trna_counts, charged_trna_counts, ) = read_stacked_bulk_molecules( + cell_paths, (uncharged_trna_names, charged_trna_names, ), + remove_first=True) + charged_trna_counts = charged_trna_counts @ aa_from_trna + uncharged_trna_counts = uncharged_trna_counts @ aa_from_trna + fraction_charged = charged_trna_counts / ( + uncharged_trna_counts + charged_trna_counts) + trp_fraction_charged = fraction_charged[:, trp_index] + + # Get ppGpp concentrations + ppgpp_conc = read_stacked_columns( + cell_paths, 'GrowthLimits', 'ppgpp_conc', + remove_first=True).squeeze() # uM + + # Get instantaneous doubling times + growth_rates = (1 / units.s) * read_stacked_columns( + cell_paths, 'Mass', 'instantaneous_growth_rate', + remove_first=True) + doubling_times = ( + (1 / growth_rates) * np.log(2)).asNumber(units.min) + + def plot_ax(ax, y, ylabel, ylim, yticks, clip_on=False): + ax.plot(time / 60, y, color='#8c8c8c', clip_on=clip_on) + ax.set_ylabel(ylabel, fontsize=8) + ax.spines["top"].set_visible(False) + ax.spines["right"].set_visible(False) + ax.spines["bottom"].set_position(("outward", 10)) + ax.spines["left"].set_position(("outward", 10)) + ax.spines["bottom"].set_visible(False) + ax.get_xaxis().set_visible(False) + ax.set_xlim([0, time[-1] / 60]) + ax.set_ylim(ylim) + ax.set_yticks(yticks) + + plt.figure(figsize=(12, 10)) + + # Plot per-copy transcription probability of rRNA operons + ax1 = plt.subplot(11, 1, 1) + plot_ax( + ax1, rrna_synthesis_probs / rrna_copy_numbers, + 'p_trc per\nrRNA copy', [0, 0.015], [0, 0.015]) + + # Plot copy numbers of rRNA operons + ax2 = plt.subplot(11, 1, 2, sharex=ax1) + plot_ax( + ax2, rrna_copy_numbers, 'rRNA\ncopy #', + [0, 60], [0, 60]) + + # Plot total transcription probability of rRNA operons + ax3 = plt.subplot(11, 1, 3) + plot_ax( + ax3, rrna_synthesis_probs, + 'total rRNA\np_trc', [0, 0.25], [0, 0.25]) + + # Plot number of transcription initiation events + ax4 = plt.subplot(11, 1, 4, sharex=ax1) + plot_ax( + ax4, rrna_init_events, 'rRNA\ninit #', + [0, 80], [0, 40, 80]) + + # Plot number of ribosome subunit complexation events + ax5 = plt.subplot(11, 1, 5, sharex=ax1) + plot_ax( + ax5, ribosome_complexation_events, '# of comp.\nevents', + [0, 150], [0, 150]) + + # Plot counts of active ribosomes + ax6 = plt.subplot(11, 1, 6, sharex=ax1) + plot_ax( + ax6, active_ribosome_counts, '# of active\nribosomes', + [0, 80000], [0, 40000, 80000]) + + # Plot number of imported AAs + ax7 = plt.subplot(11, 1, 7, sharex=ax1) + plot_ax( + ax7, imported_aas, '# of aas\nimported', + [0, 8e6], [0, 8e6]) + + # Plot number of translated AAs + ax8 = plt.subplot(11, 1, 8, sharex=ax1) + plot_ax( + ax8, translated_aas, '# of aas\ntranslated', + [0, 2e6], [0, 1e6, 2e6]) + + # Plot fraction of charged TRP tRNAs + ax9 = plt.subplot(11, 1, 9, sharex=ax1) + plot_ax( + ax9, trp_fraction_charged, 'TRP charged\nfraction', + [0, 1], [0, 0.5, 1]) + + # Plot ppGpp concentrations + ax10 = plt.subplot(11, 1, 10, sharex=ax1) + plot_ax( + ax10, ppgpp_conc, 'ppGpp\nconc (uM)', + [0, 100], [0, 50, 100]) + + # Plot doubling times + ax11 = plt.subplot(11, 1, 11, sharex=ax1) + plot_ax( + ax11, doubling_times, 'DT\n(min)', + [0, 80], [0, 40, 80], clip_on=True) + ax11.get_xaxis().set_visible(True) + ax11.spines["bottom"].set_visible(True) + ax11.set_xlabel('Time (generations)') + ax11.set_xticks((gen_start_times / 60).tolist() + [time[-1] / 60]) + ax11.set_xticklabels(np.arange(len(gen_start_times) + 1).tolist()) + + plt.tight_layout() + exportFigure(plt, plotOutDir, plotOutFileName, metadata) + plt.close('all') + + + +if __name__ == '__main__': + Plot().cli() From 5e65d4fb3d53a70ff3189c0df323f0efd47ac0c1 Mon Sep 17 00:00:00 2001 From: Riley Juenemann <39416387+rjuenemann@users.noreply.github.com> Date: Thu, 2 May 2024 16:50:08 -0700 Subject: [PATCH 17/34] Add listeners for max_p in transcript and polypeptide initiation (#1448) * add listeners for max_p in transcript and polypeptide initiation * correct typo in ribosomal subunit label in a comment --- models/ecoli/listeners/ribosome_data.py | 17 +++++++++++------ models/ecoli/listeners/rna_synth_prob.py | 2 ++ .../ecoli/processes/polypeptide_initiation.py | 5 ++++- models/ecoli/processes/transcript_initiation.py | 1 + 4 files changed, 18 insertions(+), 7 deletions(-) diff --git a/models/ecoli/listeners/ribosome_data.py b/models/ecoli/listeners/ribosome_data.py index 825f84169..4bdeff10a 100644 --- a/models/ecoli/listeners/ribosome_data.py +++ b/models/ecoli/listeners/ribosome_data.py @@ -63,14 +63,16 @@ def allocate(self): self.processElongationRate = 0. self.translationSupply = np.zeros(21, np.float64) self.numTrpATerminated = 0. - self.target_prob_translation_per_transcript = np.zeros(self.nMonomers, - np.float64) - self.actual_prob_translation_per_transcript = np.zeros(self.nMonomers, - np.float64) + self.max_p = 0. + self.max_p_per_protein = np.zeros(self.nMonomers, np.float64) + self.target_prob_translation_per_transcript = np.zeros( + self.nMonomers, np.float64) + self.actual_prob_translation_per_transcript = np.zeros( + self.nMonomers, np.float64) self.mRNA_is_overcrowded = np.zeros(self.nMonomers, bool) self.is_n_ribosomes_to_activate_reduced = False - self.ribosome_init_event_per_monomer = np.zeros(self.nMonomers, - np.int64) + self.ribosome_init_event_per_monomer = np.zeros( + self.nMonomers, np.int64) # Attributes computed by the listener self.n_ribosomes_per_transcript = np.zeros(self.nMonomers, np.int64) @@ -133,6 +135,7 @@ def update(self): def tableCreate(self, tableWriter): subcolumns = { + 'max_p_per_protein': 'monomerIds', 'target_prob_translation_per_transcript': 'monomerIds', 'actual_prob_translation_per_transcript': 'monomerIds', 'mRNA_is_overcrowded': 'monomerIds', @@ -175,6 +178,8 @@ def tableAppend(self, tableWriter): processElongationRate = self.processElongationRate, translationSupply = self.translationSupply, numTrpATerminated = self.numTrpATerminated, + max_p = self.max_p, + max_p_per_protein = self.max_p_per_protein, target_prob_translation_per_transcript=self .target_prob_translation_per_transcript, actual_prob_translation_per_transcript=self diff --git a/models/ecoli/listeners/rna_synth_prob.py b/models/ecoli/listeners/rna_synth_prob.py index 3a4b6f77c..feab03c0f 100644 --- a/models/ecoli/listeners/rna_synth_prob.py +++ b/models/ecoli/listeners/rna_synth_prob.py @@ -41,6 +41,7 @@ def initialize(self, sim, sim_data): def allocate(self): super(RnaSynthProb, self).allocate() + self.max_p = 0. self.target_rna_synth_prob = np.zeros(self.n_TU, np.float64) self.actual_rna_synth_prob = np.zeros(self.n_TU, np.float64) self.tu_is_overcrowded = np.zeros(self.n_TU, bool) @@ -143,6 +144,7 @@ def tableAppend(self, tableWriter): target_rna_synth_prob = self.target_rna_synth_prob, actual_rna_synth_prob = self.actual_rna_synth_prob, tu_is_overcrowded = self.tu_is_overcrowded, + max_p = self.max_p, actual_rna_synth_prob_per_cistron = self.actual_rna_synth_prob_per_cistron, target_rna_synth_prob_per_cistron = self.target_rna_synth_prob_per_cistron, expected_rna_init_per_cistron = self.expected_rna_init_per_cistron, diff --git a/models/ecoli/processes/polypeptide_initiation.py b/models/ecoli/processes/polypeptide_initiation.py index 5a56daa7a..e5f27e9dd 100755 --- a/models/ecoli/processes/polypeptide_initiation.py +++ b/models/ecoli/processes/polypeptide_initiation.py @@ -156,6 +156,9 @@ def evolveState(self): * (units.s) * self.timeStepSec() / n_ribosomes_to_activate).asNumber() max_p_per_protein = max_p*cistron_counts[self.cistron_to_monomer_mapping] + self.writeToListener("RibosomeData", "max_p", max_p) + self.writeToListener( + "RibosomeData", "max_p_per_protein", max_p_per_protein) is_overcrowded = (protein_init_prob > max_p_per_protein) # Initalize flag to record if the number of ribosomes activated at this @@ -271,7 +274,7 @@ def evolveState(self): pos_on_mRNA=positions_on_mRNA, ) - # Decrement free 30S and 70S ribosomal subunit counts + # Decrement free 30S and 50S ribosomal subunit counts self.ribosome30S.countDec(n_new_proteins.sum()) self.ribosome50S.countDec(n_new_proteins.sum()) diff --git a/models/ecoli/processes/transcript_initiation.py b/models/ecoli/processes/transcript_initiation.py index c83d9f090..34b27dac0 100755 --- a/models/ecoli/processes/transcript_initiation.py +++ b/models/ecoli/processes/transcript_initiation.py @@ -229,6 +229,7 @@ def evolveState(self): # allowed from the known RNAP footprint sizes max_p = (self.rnaPolymeraseElongationRate / self.active_rnap_footprint_size * (units.s) * self.timeStepSec() / n_RNAPs_to_activate).asNumber() + self.writeToListener("RnaSynthProb", "max_p", max_p) is_overcrowded = (self.promoter_init_probs > max_p) while np.any(self.promoter_init_probs > max_p): From 2e0eec8003c7d1078f89c6c110df09e6acc2807c Mon Sep 17 00:00:00 2001 From: Gwanggyu Sun <32276711+ggsun@users.noreply.github.com> Date: Mon, 6 May 2024 10:27:09 -0700 Subject: [PATCH 18/34] Balance out synthesis probabilities of rRNA promoters (#1449) --- reconstruction/ecoli/dataclasses/process/transcription.py | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/reconstruction/ecoli/dataclasses/process/transcription.py b/reconstruction/ecoli/dataclasses/process/transcription.py index db9f08cf4..1a740a7cc 100755 --- a/reconstruction/ecoli/dataclasses/process/transcription.py +++ b/reconstruction/ecoli/dataclasses/process/transcription.py @@ -1903,7 +1903,7 @@ def expression_from_ppgpp(self, ppgpp): f_ppgpp = self.fraction_rnap_bound_ppgpp(ppgpp) return normalize(self.exp_free * (1 - f_ppgpp) + self.exp_ppgpp * f_ppgpp) - def synth_prob_from_ppgpp(self, ppgpp, copy_number): + def synth_prob_from_ppgpp(self, ppgpp, copy_number, balanced_rRNA_prob=True): """ Calculates the synthesis probability of each gene at a given concentration of ppGpp. @@ -1912,6 +1912,8 @@ def synth_prob_from_ppgpp(self, ppgpp, copy_number): ppgpp (float with mol / volume units): concentration of ppGpp copy_number (Callable[float, int]): function that gives the expected copy number given a doubling time and gene replication coordinate + balanced_rRNA_prob (bool): if True, set the synthesis probabilities + of rRNA promoters to be equal to one another Returns prob (ndarray[float]): normalized synthesis probability for each gene @@ -1940,6 +1942,9 @@ def synth_prob_from_ppgpp(self, ppgpp, copy_number): factor = loss / n_avg_copy prob = normalize((self.exp_free * (1 - f_ppgpp) + self.exp_ppgpp * f_ppgpp) * factor) + if balanced_rRNA_prob: + prob[self.rna_data['is_rRNA']] = prob[self.rna_data['is_rRNA']].mean() + return prob, factor def get_rnap_active_fraction_from_ppGpp(self, ppgpp): From 3714dd0b52df961928b90a5e4bf1827a42abf390 Mon Sep 17 00:00:00 2001 From: Gwanggyu Sun <32276711+ggsun@users.noreply.github.com> Date: Fri, 10 May 2024 14:51:30 -0700 Subject: [PATCH 19/34] Add variant plot for RNAP densities on rRNA operons (#1450) --- models/ecoli/analysis/variant/__init__.py | 1 + .../variant/rrna_gene_rnap_densities.py | 151 ++++++++++++++++++ 2 files changed, 152 insertions(+) create mode 100644 models/ecoli/analysis/variant/rrna_gene_rnap_densities.py diff --git a/models/ecoli/analysis/variant/__init__.py b/models/ecoli/analysis/variant/__init__.py index c54b11757..d6677b1e1 100644 --- a/models/ecoli/analysis/variant/__init__.py +++ b/models/ecoli/analysis/variant/__init__.py @@ -33,6 +33,7 @@ "rnap_counts_histogram.py", "rnap_crowding.py", "rrna_gene_copy_numbers.py", + "rrna_gene_rnap_densities.py", "tfFit.py", "tfFitComparison.py", "time_step.py", diff --git a/models/ecoli/analysis/variant/rrna_gene_rnap_densities.py b/models/ecoli/analysis/variant/rrna_gene_rnap_densities.py new file mode 100644 index 000000000..ae4f90e47 --- /dev/null +++ b/models/ecoli/analysis/variant/rrna_gene_rnap_densities.py @@ -0,0 +1,151 @@ +""" +Compares the averaged densities of RNAPs on genes encoding for rRNAs across +variants. +""" + +import pickle +import os + +from matplotlib import pyplot as plt +# noinspection PyUnresolvedReferences +import numpy as np + +from models.ecoli.analysis import variantAnalysisPlot +from wholecell.analysis.analysis_tools import (exportFigure, + read_stacked_columns) +from wholecell.io.tablereader import TableReader +from wholecell.utils import units + + +TU_ID_TO_RRNA_OPERON_ID = { + 'TU0-1181[c]': 'rrnA', + 'TU0-1182[c]': 'rrnB', + 'TU0-1183[c]': 'rrnC', + 'TU0-1191[c]': 'rrnD', + 'TU0-1186[c]': 'rrnE', + 'TU0-1187[c]': 'rrnG', + 'TU0-1189[c]': 'rrnH', + } + +class Plot(variantAnalysisPlot.VariantAnalysisPlot): + def do_plot(self, inputDir, plotOutDir, plotOutFileName, simDataFile, validationDataFile, metadata): + with open(simDataFile, 'rb') as f: + sim_data = pickle.load(f) + + rnap_footprint_size = sim_data.process.transcription.active_rnap_footprint_size.asNumber( + units.nt) + + variants = self.ap.get_variants() + variant_index_to_distance_each_rrna = {} + variant_index_to_avg_distance = {} + + for variant in variants: + with open(self.ap.get_variant_kb(variant), 'rb') as f: + variant_sim_data = pickle.load(f) + + # Get RNAP elongation rate used in simulations + nutrients = variant_sim_data.conditions[variant_sim_data.condition]["nutrients"] + rnap_elong_rate = variant_sim_data.process.transcription.rnaPolymeraseElongationRateDict[ + nutrients].asNumber(units.nt / units.s) + + # Get cell paths + cell_paths = self.ap.get_cells( + variant=[variant], only_successful=True) + + # Get rna ID attributes from reference cell path + reference_cell_path = cell_paths[0] + sim_out_dir = os.path.join(reference_cell_path, 'simOut') + rnap_data_reader = TableReader( + os.path.join(sim_out_dir, 'RnapData')) + rnap_data_rna_ids = rnap_data_reader.readAttribute('rnaIds') + rna_synth_prob_reader = TableReader( + os.path.join(sim_out_dir, 'RnaSynthProb')) + rna_synth_prob_rna_ids = rna_synth_prob_reader.readAttribute('rnaIds') + + # Get indexes of rRNA operons in both listeners + rnap_data_rrna_indexes = np.array([ + rnap_data_rna_ids.index(key) + for key in TU_ID_TO_RRNA_OPERON_ID.keys() + ]) + rna_synth_prob_rrna_indexes = np.array([ + rna_synth_prob_rna_ids.index(key) + for key in TU_ID_TO_RRNA_OPERON_ID.keys() + ]) + + # Get number of rRNA initiation events and copy numbers + initiation_events = read_stacked_columns( + cell_paths, 'RnapData', 'rnaInitEvent', + ignore_exception=True, remove_first=True, + fun=lambda x: x[:, rnap_data_rrna_indexes] + ) + copy_numbers = read_stacked_columns( + cell_paths, 'RnaSynthProb', 'promoter_copy_number', + ignore_exception=True, remove_first=True, + fun=lambda x: x[:, rna_synth_prob_rrna_indexes]) + + # Calculate total number of initiation events per copy + initiation_events_per_copy_each_rrna = ( + initiation_events / copy_numbers + ).sum(axis=0) + + # Get mask for rRNAs with zero initiation events throughout all + # sims - these rRNAs are assumed to be nonfunctional (most likely + # knocked out) + nonfunctional_rrna_mask = ( + initiation_events_per_copy_each_rrna == 0) + + # Calculate initiation events per copy amongst all functional rRNAs + initiation_events_per_copy_all_functional_rrnas = ( + initiation_events[:, ~nonfunctional_rrna_mask].sum(axis=1) + / copy_numbers[:, ~nonfunctional_rrna_mask].sum(axis=1) + ).sum() + + # Get total simulation time + generation_lengths = read_stacked_columns( + cell_paths, 'Main', 'time', + ignore_exception=True, + fun=lambda x: x[-1] - x[0]) + total_simulation_time = generation_lengths.sum() + + # Calculate average distance between adjacent RNAPs for each operon + # and for all operons + with np.errstate(divide='ignore'): + avg_rrna_distance_each_rrna = ( + rnap_elong_rate * total_simulation_time + / initiation_events_per_copy_each_rrna) + avg_rrna_distance_all_rrnas = ( + rnap_elong_rate * total_simulation_time + / initiation_events_per_copy_all_functional_rrnas) + + variant_index_to_distance_each_rrna[variant] = avg_rrna_distance_each_rrna + variant_index_to_avg_distance[variant] = avg_rrna_distance_all_rrnas + + fig = plt.figure(figsize=(6, 4)) + + # Plot distances for each rRNA operon and the average + ax = fig.add_subplot(1, 1, 1) + for variant_index, distances in variant_index_to_distance_each_rrna.items(): + ax.scatter( + np.arange(8), + list(distances) + [variant_index_to_avg_distance[variant_index]], + marker='x', label=f'Variant {variant_index}') + + # Draw dotted line at RNAP's molecular footprint + ax.axhline(rnap_footprint_size, ls='--', lw=2, color='k') + + ax.set_xticks(np.arange(8)) + ax.set_xticklabels([v for v in TU_ID_TO_RRNA_OPERON_ID.values()] + ['avg']) + ax.set_xlim([-0.8, 7.8]) + ax.set_ylim([0, 600]) + ax.set_ylabel('Avg distance between RNAPs (nt)') + ax.legend(loc='center left', bbox_to_anchor=(1, 0.5)) + ax.spines['top'].set_visible(False) + ax.spines['right'].set_visible(False) + + plt.tight_layout() + exportFigure(plt, plotOutDir, plotOutFileName, metadata) + plt.close('all') + + +if __name__ == "__main__": + Plot().cli() From 10dcd5ee974f36bb5497fd6f04211079608cd3c7 Mon Sep 17 00:00:00 2001 From: Gwanggyu Sun <32276711+ggsun@users.noreply.github.com> Date: Tue, 28 May 2024 09:18:17 -0700 Subject: [PATCH 20/34] Skip rRNA gene RNAP density plot if rRNA IDs do not match (#1451) --- .../analysis/variant/rrna_gene_rnap_densities.py | 11 +++++++++++ models/ecoli/processes/chromosome_structure.py | 2 -- 2 files changed, 11 insertions(+), 2 deletions(-) diff --git a/models/ecoli/analysis/variant/rrna_gene_rnap_densities.py b/models/ecoli/analysis/variant/rrna_gene_rnap_densities.py index ae4f90e47..1a20437aa 100644 --- a/models/ecoli/analysis/variant/rrna_gene_rnap_densities.py +++ b/models/ecoli/analysis/variant/rrna_gene_rnap_densities.py @@ -32,6 +32,17 @@ def do_plot(self, inputDir, plotOutDir, plotOutFileName, simDataFile, validation with open(simDataFile, 'rb') as f: sim_data = pickle.load(f) + # Load IDs of rRNA transcription units + rna_data = sim_data.process.transcription.rna_data + rRNA_ids = rna_data['id'][rna_data['is_rRNA']] + + # If the list of rRNA IDs does not match the rRNA TU IDs, skip analysis + # (likely using rRNA operon structure variants) + if set(rRNA_ids) != set(TU_ID_TO_RRNA_OPERON_ID.keys()): + print( + 'Skipping analysis - this analysis should be run for simulations with WT rRNA operon structures.') + return + rnap_footprint_size = sim_data.process.transcription.active_rnap_footprint_size.asNumber( units.nt) diff --git a/models/ecoli/processes/chromosome_structure.py b/models/ecoli/processes/chromosome_structure.py index 0e84c0cc1..7548f2beb 100644 --- a/models/ecoli/processes/chromosome_structure.py +++ b/models/ecoli/processes/chromosome_structure.py @@ -386,8 +386,6 @@ def get_removed_molecules_mask(domain_indexes, coordinates): else: self.ppi.countDec(-n_ppi_added) - assert n_initiated_sequences == incomplete_transcription_event.sum() - # Write to listener self.writeToListener( 'RnapData', 'incomplete_transcription_event', From 29039b797f77d86befe8cfc6d33aaa45c489f83e Mon Sep 17 00:00:00 2001 From: Jerry Morrison <1fish2@users.noreply.github.com> Date: Thu, 20 Jun 2024 17:57:07 -0700 Subject: [PATCH 21/34] Change from Google Cloud Container Registry to Artifact Registry (#1452) * Switch from the deprecated Google Container Registry to Artifact Registry "wcm". * Update the GitHub xianyi repo URL to OpenMathLib. * Update to OpenBLAS v0.3.27 . It has a bunch of bug fixes and support for Apple Silicon. TODO items for the WCM runtime Docker container: * Compile OpenBLAS by default? * Upgrade from Python 3.11.3 to 3.11.8? * Use a Python virtual env in the container? `WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv` * Fix runtime deprecation warnings about numpy.distutils, msvccompiler.py, and Blas libraries. --- cloud/build-runtime.sh | 13 ++++++++----- cloud/build-wcm.sh | 14 +++++++++----- cloud/build.sh | 2 +- cloud/docker/runtime/Dockerfile | 6 +++--- cloud/docker/wholecell/Dockerfile | 10 ++++++---- config-build-2-wcm-code.json | 6 +++--- docs/README.md | 6 +++--- docs/create-pyenv.md | 2 +- docs/google-cloud.md | 7 ++++--- runscripts/cloud/custom.py | 3 ++- runscripts/cloud/wcm.py | 5 +++-- 11 files changed, 43 insertions(+), 31 deletions(-) diff --git a/cloud/build-runtime.sh b/cloud/build-runtime.sh index 3845bf47c..e3179f894 100755 --- a/cloud/build-runtime.sh +++ b/cloud/build-runtime.sh @@ -1,10 +1,10 @@ #!/bin/sh # Use Google Cloud Build servers to build a personalized "${ID}-wcm-runtime" -# Docker Image and store it in the Google Container Registry. +# Docker Image and store it in a Google Artifact Registry. # # COMMAND LINE ARGUMENTS: # ARG1: Distinguishing ID prefix for the "${ID}-wcm-runtime" tag for the -# Docker Image to build in GCR; defaults to "${USER}". Must be in lower case. +# Docker Image to build; defaults to "${USER}". Must be in lower case. # # ASSUMES: The current working dir is the wcEcoli/ project root. @@ -12,14 +12,17 @@ set -eu ID="${1:-$USER}" -PROJECT="$(gcloud config get-value core/project)" +PROJECT="$(gcloud config get core/project)" +REGION="$(gcloud config get compute/region)" WCM_RUNTIME="${ID}-wcm-runtime" -TAG="gcr.io/${PROJECT}/${WCM_RUNTIME}" +TAG="${REGION}-docker.pkg.dev/${PROJECT}/wcm/${WCM_RUNTIME}" echo "=== Cloud-building WCM runtime Docker Image: ${TAG} ===" # This needs only one payload file so copy it in rather than using a config at # the project root which would upload the entire project. +# --region sets the Cloud Build region while TAG sets the artifact region et al. cp requirements.txt cloud/docker/runtime/ -gcloud builds submit --timeout=3h --tag "${TAG}" cloud/docker/runtime/ +gcloud builds submit --timeout=3h --region="${REGION}" \ + --tag="${TAG}" cloud/docker/runtime/ rm cloud/docker/runtime/requirements.txt diff --git a/cloud/build-wcm.sh b/cloud/build-wcm.sh index 152b2744f..d126659b3 100755 --- a/cloud/build-wcm.sh +++ b/cloud/build-wcm.sh @@ -1,13 +1,13 @@ #!/bin/sh # Use Google Cloud Build servers to build a personalized "${ID}-wcm-code" Docker -# Image and store it in the Google Container Registry. +# Image and store it in a Google Artifact Registry. # # COMMAND LINE ARGUMENTS: # ARG1: Distinguishing ID prefix for the "wcm-code" Docker Image tag; # defaults to "${USER}". -# ARG2: Docker tag for the wcm-runtime Image in GCR to build FROM; defaults to -# "${ID}-wcm-runtime". -# The named Docker image must already exist in the GCR project. +# ARG2: Docker tag for the wcm-runtime Image in Artifact Registry to build FROM; +# defaults to "${ID}-wcm-runtime". +# The named Docker Image must already exist in the Artifact Registry. # # ASSUMES: The current working dir is the wcEcoli/ project root. @@ -15,6 +15,7 @@ set -eu ID="${1:-$USER}" +REGION="$(gcloud config get compute/region)" WCM_RUNTIME="${2:-${ID}-wcm-runtime}" WCM_CODE="${ID}-wcm-code" GIT_HASH=$(git rev-parse HEAD) @@ -29,7 +30,10 @@ echo "=== git hash ${GIT_HASH}, git branch ${GIT_BRANCH} ===" # This needs a config file to identify the project files to upload and the # Dockerfile to run. +# --region sets the Cloud Build region. gcloud builds submit --timeout=15m --config config-build-2-wcm-code.json \ - --substitutions="_WCM_RUNTIME=${WCM_RUNTIME},_WCM_CODE=${WCM_CODE},_GIT_HASH=${GIT_HASH},_GIT_BRANCH=${GIT_BRANCH},_TIMESTAMP=${TIMESTAMP}" + --region="${REGION}" \ + --substitutions="_WCM_RUNTIME=${WCM_RUNTIME},_WCM_CODE=${WCM_CODE},\ +_GIT_HASH=${GIT_HASH},_GIT_BRANCH=${GIT_BRANCH},_TIMESTAMP=${TIMESTAMP}" rm source-info/git_diff.txt diff --git a/cloud/build.sh b/cloud/build.sh index d85429249..d8276ea51 100755 --- a/cloud/build.sh +++ b/cloud/build.sh @@ -1,6 +1,6 @@ #!/bin/sh # Use Google Cloud Build servers to build layered WCM Docker Images and store -# them in the Google Container Registry. +# them in a Google Artifact Registry in the current region. # # ASSUMES: The current working dir is the wcEcoli/ project root. diff --git a/cloud/docker/runtime/Dockerfile b/cloud/docker/runtime/Dockerfile index f6febebac..6b278b291 100644 --- a/cloud/docker/runtime/Dockerfile +++ b/cloud/docker/runtime/Dockerfile @@ -5,7 +5,7 @@ # # > docker build -f cloud/docker/runtime/Dockerfile -t ${USER}-wcm-runtime . # -# (To build using the Cloud Build service and store in the Container Registry, +# (To build using the Cloud Build service and store in an Artifact Registry, # run `cloud/build.sh`.) # # Add option `--build-arg from=ABC` to build from a different base image "ABC" @@ -53,10 +53,10 @@ ARG NO_AVX2=0 ENV NO_AVX2="$NO_AVX2" # Install OpenBLAS for numpy, scipy, and Aesara. -ENV OPENBLAS_LABEL=v0.3.23 +ENV OPENBLAS_LABEL=v0.3.27 RUN if [ -f ~/.numpy-site.cfg ]; then \ (mkdir -p openblas && cd openblas \ - && curl -SL https://github.com/xianyi/OpenBLAS/archive/${OPENBLAS_LABEL}.tar.gz | tar -xz \ + && curl -SL https://github.com/OpenMathLib/OpenBLAS/archive/${OPENBLAS_LABEL}.tar.gz | tar -xz \ && cd OpenBLAS* \ && echo "Compiling OpenBLAS ${OPENBLAS_LABEL} with NO_AVX2=${NO_AVX2}" \ && make "NO_AVX2=${NO_AVX2}" FC=gfortran \ diff --git a/cloud/docker/wholecell/Dockerfile b/cloud/docker/wholecell/Dockerfile index 3a1c7b7f2..30dcf6ac8 100644 --- a/cloud/docker/wholecell/Dockerfile +++ b/cloud/docker/wholecell/Dockerfile @@ -9,7 +9,7 @@ # (If you want to build container image #3 on top of the locally-built base, # you'll have to edit that Dockerfile or upload this image.) # -# (To build using the Cloud Build service and store in the Container Registry, +# (To build using the Cloud Build service and store in an Artifact Registry, # run `cloud/build.sh`.) # # After building locally you can start up a new container from the image: @@ -18,8 +18,9 @@ # # or if you used build.sh or build-wcm.sh to build using Cloud Build: # -# > PROJECT="$(gcloud config get-value core/project)" -# > TAG="gcr.io/${PROJECT}/${USER}-wcm-code" +# > PROJECT="$(gcloud config get core/project)" +# > REGION="$(gcloud config get compute/region)" +# > TAG="${REGION}-docker.pkg.dev/${PROJECT}/wcm/${USER}-wcm-code" # > docker run --name wholecelltest -it --rm "${TAG}" # # It will start a shell where you can execute commands: @@ -46,7 +47,8 @@ LABEL application="Whole Cell Model of Escherichia coli" \ email="allencentercovertlab@gmail.com" \ license="https://github.com/CovertLab/WholeCellEcoliRelease/blob/master/LICENSE.md" \ organization="Covert Lab at Stanford" \ - website="https://www.covert.stanford.edu/" + website="https://www.covert.stanford.edu/" \ + repository="https://github.com/CovertLab/wcEcoli" COPY . /wcEcoli WORKDIR /wcEcoli diff --git a/config-build-2-wcm-code.json b/config-build-2-wcm-code.json index ea1e70bdb..0b0214f94 100644 --- a/config-build-2-wcm-code.json +++ b/config-build-2-wcm-code.json @@ -4,17 +4,17 @@ "name": "gcr.io/cloud-builders/docker", "args": [ "build", - "--build-arg", "from=gcr.io/${PROJECT_ID}/${_WCM_RUNTIME}", + "--build-arg", "from=${LOCATION}-docker.pkg.dev/${PROJECT_ID}/wcm/${_WCM_RUNTIME}", "--build-arg", "git_hash=${_GIT_HASH}", "--build-arg", "git_branch=${_GIT_BRANCH}", "--build-arg", "timestamp=${_TIMESTAMP}", - "-t", "gcr.io/${PROJECT_ID}/${_WCM_CODE}", + "-t", "${LOCATION}-docker.pkg.dev/${PROJECT_ID}/wcm/${_WCM_CODE}", "-f", "cloud/docker/wholecell/Dockerfile", "." ] } ], "images": [ - "gcr.io/${PROJECT_ID}/${_WCM_CODE}" + "${LOCATION}-docker.pkg.dev/${PROJECT_ID}/wcm/${_WCM_CODE}" ] } diff --git a/docs/README.md b/docs/README.md index da09e601c..6f7911af4 100644 --- a/docs/README.md +++ b/docs/README.md @@ -43,8 +43,8 @@ Docker mechanics. ```shell script cloud/build.sh - docker pull gcr.io/${PROJECT}/${USER}-wcm-code - docker run --name=wcm -it --rm gcr.io/${PROJECT}/${USER}-wcm-code + docker pull ${REGION}-docker.pkg.dev/${PROJECT}/wcm/${USER}-wcm-code + docker run --name=wcm -it --rm ${REGION}-docker.pkg.dev/${PROJECT}/wcm/${USER}-wcm-code ``` **NOTE:** It's better to build the Docker Image on Linux (e.g. in Google Cloud @@ -52,7 +52,7 @@ Docker mechanics. a Docker bug by disabling AVX2 instructions in OpenBLAS. That change somehow makes the computation produce different results and run a little slower. An Image built on Linux won't have the AVX2 workaround and yet it runs fine on macOS. - See [xianyi/OpenBLAS#2244](https://github.com/xianyi/OpenBLAS/issues/2244#issuecomment-696510557). + See [OpenMathLib/OpenBLAS#2244](https://github.com/OpenMathLib/OpenBLAS/issues/2244#issuecomment-696510557). Once you have a Docker Image, you can run the model's Python programs inside the Container. (PyCharm Pro should support debugging into a Docker Container but we haven't tested that.) diff --git a/docs/create-pyenv.md b/docs/create-pyenv.md index 5d263a93f..601e80678 100644 --- a/docs/create-pyenv.md +++ b/docs/create-pyenv.md @@ -6,7 +6,7 @@ Before you begin all the steps below to install the Python runtime for the Whole The script `cloud/build-containers-locally.sh` will build a Docker Image on your computer if you have Docker Engine or Docker Desktop installed. -The script `cloud/build.sh` will do the same using Google Container Registry if +The script `cloud/build.sh` will do the same using Google Artifact Registry if you have a Google Cloud project set up. Either way, you can run the Whole Cell Model (WCM) in a Docker Container, isolated from your computer's operating system, Python versions, binary libraries, and everything else installed. diff --git a/docs/google-cloud.md b/docs/google-cloud.md index 53e553e8b..f35a906a1 100644 --- a/docs/google-cloud.md +++ b/docs/google-cloud.md @@ -119,9 +119,10 @@ Also see [Borealis: How to run a workflow](https://github.com/CovertLab/borealis Cloud Firetasks that start running after you build an Image will "pull" it and use it, even Firetasks that were already queued to run. You can do this to update your code then use `lpad` commands to restart failed tasks and resume paused tasks. - The full Docker Image path is `gcr.io/$PROJECT/$USER-wcm-code`, where - `$PROJECT` is the Google Cloud project name and `$USER` is your local username. - You can also "pull" this Image and run it locally. + The full Docker Image path is `${REGION}-docker.pkg.dev/${PROJECT}/wcm/${USER}-wcm-code`, + where `$REGION` is Artifact Registry region (we usually use `us-west1`), + `$PROJECT` is the Google Cloud project name, and `$USER` is your local username. + You can also `pull` this Image with Docker to run it locally. 1. Open an ssh tunnel to the project's MongoDB "LaunchPad" server in Google Compute Engine: diff --git a/runscripts/cloud/custom.py b/runscripts/cloud/custom.py index dd2d65e2d..8b7d8bb6d 100755 --- a/runscripts/cloud/custom.py +++ b/runscripts/cloud/custom.py @@ -125,7 +125,8 @@ def run(self, args): # the owner_id, timestamp arg, and description arg match. setattr(args, 'storage_basename', 'WCM') - self.DOCKER_IMAGE = f'gcr.io/{gcp.project()}/{owner_id}-wcm-code' + region = gcp.gcloud_get_config('compute/region') + self.DOCKER_IMAGE = f'{region}-docker.pkg.dev/{gcp.project()}/wcm/{owner_id}-wcm-code' super().run(args) diff --git a/runscripts/cloud/wcm.py b/runscripts/cloud/wcm.py index a5942ebb3..73dfc6796 100755 --- a/runscripts/cloud/wcm.py +++ b/runscripts/cloud/wcm.py @@ -33,7 +33,7 @@ # ':latest' -- "You keep using that word. I do not think it means what you think it means." -DOCKER_IMAGE = 'gcr.io/{}/{}-wcm-code' +DOCKER_IMAGE = '{}-docker.pkg.dev/{}/wcm/{}-wcm-code' GCE_VM_MACHINE_TYPE = workflow_cli.GCE_VM_MACHINE_TYPE @@ -53,7 +53,8 @@ def __init__(self, owner_id, timestamp, verbose_logging=True, description=description) self.timestamp = timestamp - self.image = DOCKER_IMAGE.format(gcp.project(), owner_id) + region = gcp.gcloud_get_config('compute/region') + self.image = DOCKER_IMAGE.format(region, gcp.project(), owner_id) subdir = Workflow.timestamped_description(timestamp, description) self.storage_prefix = pp.join( From 0ef77c6d6068760b047489b48e81c30d58dbb1ae Mon Sep 17 00:00:00 2001 From: Gwanggyu Sun <32276711+ggsun@users.noreply.github.com> Date: Mon, 8 Jul 2024 10:45:43 -0700 Subject: [PATCH 22/34] Add analysis output for table of genes involved in transertion (#1453) --- .../single/cotranscriptional_translation.py | 20 ++++++++++++++++++- 1 file changed, 19 insertions(+), 1 deletion(-) diff --git a/models/ecoli/analysis/single/cotranscriptional_translation.py b/models/ecoli/analysis/single/cotranscriptional_translation.py index a88717cbc..9fd01cd26 100644 --- a/models/ecoli/analysis/single/cotranscriptional_translation.py +++ b/models/ecoli/analysis/single/cotranscriptional_translation.py @@ -16,7 +16,7 @@ PLOT_TOP_N_GENES = 30 # Number of genes to be plotted in panes 2, 3, 6, and 7 MEMBRANE_COMPARTMENT_IDS = ['w', 'm', 'o', 'p', 'i'] -LABEL_TOP_N_GENES = 10 # Number of genes to be labeled in pane 8 +LABEL_TOP_N_GENES = 20 # Number of genes to be labeled in pane 8 class Plot(singleAnalysisPlot.SingleAnalysisPlot): @@ -25,6 +25,8 @@ class Plot(singleAnalysisPlot.SingleAnalysisPlot): def do_plot(self, simOutDir, plotOutDir, plotOutFileName, simDataFile, validationDataFile, metadata): with open(simDataFile, 'rb') as f: sim_data = pickle.load(f) + with open(validationDataFile, 'rb') as f: + validation_data = pickle.load(f) # Listeners used main_reader = TableReader(os.path.join(simOutDir, 'Main')) @@ -74,6 +76,9 @@ def do_plot(self, simOutDir, plotOutDir, plotOutFileName, simDataFile, validatio in protein_id_to_cistron_id.items() } + # Get essential genes list + essential_genes = validation_data.essential_genes.essential_genes + # Get mask and genomic coordinates of membrane-bound proteins membrane_protein_mask = np.array( [x[-2] in MEMBRANE_COMPARTMENT_IDS for x in protein_ids]) @@ -312,6 +317,19 @@ def do_plot(self, simOutDir, plotOutDir, plotOutFileName, simDataFile, validatio exportFigure(plt, plotOutDir, plotOutFileName, metadata) plt.close('all') + # Output table of genes taht are likely to be involved in transertion + with open(os.path.join(plotOutDir, plotOutFileName + '_transertion_table.tsv'), 'w') as f: + f.write('\t'.join(['Gene ID', 'Gene name', 'Protein ID', '# of anchored ribosomes', 'Essential?']) + '\n') + for i in top_gene_indexes: + gene_id = protein_id_to_gene_id[membrane_protein_ids[i]] + f.write('\t'.join([ + gene_id, + sim_data.common_names.get_common_name(gene_id), + membrane_protein_ids[i], + str(bound_ribosome_counts_mean[membrane_protein_mask][i]), + str(gene_id in essential_genes) + ]) + '\n') + if __name__ == '__main__': Plot().cli() From 126e003831ee7d8b0f715bde2e9d5a1a2abe3945 Mon Sep 17 00:00:00 2001 From: Riley Juenemann <39416387+rjuenemann@users.noreply.github.com> Date: Mon, 29 Jul 2024 09:40:26 -0700 Subject: [PATCH 23/34] EcoCyc 28.1 (#1454) * add in placeholders to handle special complexes separately * include active RNAP and ribosomes in reported complex counts for EcoCyc * full ribosome complex id does not have a compartment * import ecocyc 28.1 preview files * correct peroxisome compartment --- models/ecoli/analysis/cohort/ecocyc_table.py | 26 +- .../ecoli/flat/complexation_reactions.tsv | 68 +- reconstruction/ecoli/flat/dna_sites.tsv | 97 +- .../ecoli/flat/equilibrium_reactions.tsv | 12 +- reconstruction/ecoli/flat/genes.tsv | 23 +- .../ecoli/flat/metabolic_reactions.tsv | 159 +- reconstruction/ecoli/flat/metabolites.tsv | 566 +++--- reconstruction/ecoli/flat/proteins.tsv | 1572 ++++++++--------- reconstruction/ecoli/flat/rnas.tsv | 25 +- .../ecoli/flat/transcription_units.tsv | 18 +- .../ecoli/flat/trna_charging_reactions.tsv | 4 +- 11 files changed, 1347 insertions(+), 1223 deletions(-) diff --git a/models/ecoli/analysis/cohort/ecocyc_table.py b/models/ecoli/analysis/cohort/ecocyc_table.py index 123db55dd..fbf275882 100644 --- a/models/ecoli/analysis/cohort/ecocyc_table.py +++ b/models/ecoli/analysis/cohort/ecocyc_table.py @@ -36,6 +36,9 @@ 'minimal_succinate': 'MIX0-844', } +# We do not use this in our model, hardcoding it here to route active ribosome +# counts data to the correct EcoCyc page +ECOCYC_FULL_RIBOSOME_ID = 'CPLX0-3964' def save_file(out_dir, filename, columns, values): output_file = os.path.join(out_dir, filename) @@ -301,6 +304,7 @@ def normalize_within_each_type(values, n_mRNA, n_tRNA, n_rRNA): # Load attributes for complexes complex_ids = sim_data.process.complexation.ids_complexes + complex_ecocyc_ids = [complex_id[:-3] for complex_id in complex_ids] # strip [*] complex_mw = sim_data.getter.get_masses(complex_ids).asNumber(units.fg / units.count) # Read columns @@ -309,6 +313,26 @@ def normalize_within_each_type(values, n_mRNA, n_tRNA, n_rRNA): cell_paths, (complex_ids, ), remove_first=True, ignore_exception=True) + # Add active RNA polymerase counts to inactive RNA polymerase counts + active_RNAP_index = unique_molecule_counts_reader.readAttribute( + "uniqueMoleculeIds").index('active_RNAP') + active_RNAP_counts = read_stacked_columns( + cell_paths, 'UniqueMoleculeCounts', + 'uniqueMoleculeCounts', remove_first=True, + ignore_exception=True)[:, active_RNAP_index] + inactive_RNAP_id = sim_data.molecule_ids.full_RNAP + complex_table_RNAP_index = complex_ids.index(inactive_RNAP_id) + complex_counts[:, complex_table_RNAP_index] += active_RNAP_counts + + # Count active ribosomes as full ribosome complexes + complex_ids.append(ECOCYC_FULL_RIBOSOME_ID) + complex_ecocyc_ids.append(ECOCYC_FULL_RIBOSOME_ID) + full_ribosome_mw = (sim_data.getter.get_mass( + sim_data.molecule_ids.s50_full_complex) + sim_data.getter.get_mass( + sim_data.molecule_ids.s30_full_complex)).asNumber(units.fg / units.count) + complex_mw = np.append(complex_mw, full_ribosome_mw) + complex_counts = np.hstack((complex_counts, full_ribosome_counts[:, None])) + # Calculate derived protein values complex_counts_avg = complex_counts.mean(axis=0) complex_counts_std = complex_counts.std(axis=0) @@ -320,8 +344,6 @@ def normalize_within_each_type(values, n_mRNA, n_tRNA, n_rRNA): complex_mass_relative_to_total_dcw = complex_mass_avg / dry_masses.mean() # Save complex data in table - complex_ecocyc_ids = [complex_id[:-3] for complex_id in complex_ids] # strip [*] - columns = { 'id': 'Object ID, according to EcoCyc', 'complex-count-avg': 'A floating point number', diff --git a/reconstruction/ecoli/flat/complexation_reactions.tsv b/reconstruction/ecoli/flat/complexation_reactions.tsv index 9c42ed886..ba756b02b 100644 --- a/reconstruction/ecoli/flat/complexation_reactions.tsv +++ b/reconstruction/ecoli/flat/complexation_reactions.tsv @@ -1,7 +1,7 @@ # Organism: Escherichia coli K-12 substr. MG1655 # Database: EcoCyc -# Version: 28.1 -# Date and time generated: March 7, 2024, 13:55:38 +# Version: 28.5 +# Date and time generated: July 19, 2024, 9:40:33 "id" "stoichiometry" "common_name" "cofactors" "1-PFK_RXN" {"1-PFK": 1, "1-PFK-MONOMER": -2} null {"MG+2": 1} "2OXOGLUTARATEDEH-CPLX_RXN" {"2OXOGLUTARATEDEH-CPLX": 1, "E1O": -1, "E2O": -1, "E3-CPLX": -1} "2-oxoglutarate dehydrogenase complex" {"LIPOIC-ACID": 1, "THIAMINE-PYROPHOSPHATE": 2, "FAD": 3, "MG+2": 2} @@ -15,7 +15,7 @@ "7-ALPHA-HYDROXYSTEROID-DEH-CPLX_RXN" {"7-ALPHA-HYDROXYSTEROID-DEH-CPLX": 1, "7-ALPHA-HYDROXYSTEROID-DEH-MONOMER": -4} null {} "7KAPSYN-CPLX_RXN" {"7KAPSYN-CPLX": 1, "7KAPSYN-MONOMER": -2} null {"PYRIDOXAL_PHOSPHATE": 1} "ABC-10-CPLX_RXN" {"ABC-10-CPLX": 1, "FEPC-MONOMER": -2, "FEPD-MONOMER": -1, "FEPG-MONOMER": -1, "FEPB-MONOMER": -1} "ferric enterobactin ABC transporter" {} -"ABC-11-CPLX_RXN" {"ABC-11-CPLX": 1, "FHUC-MONOMER": -2, "FHUB-MONOMER": -1, "FHUD-MONOMER": -1} "iron(III) hydroxamate ABC transporter" {} +"ABC-11-CPLX_RXN" {"ABC-11-CPLX": 1, "FHUC-MONOMER": -2, "FHUB-MONOMER": -1, "FHUD-MONOMER": -1} "Fe(3+) hydroxamate ABC transporter" {} "ABC-12-CPLX_RXN" {"ABC-12-CPLX": 1, "GLNQ-MONOMER": -2, "GLNP-MONOMER": -2, "GLNH-MONOMER": -1} "L-glutamine ABC transporter" {} "ABC-13-CPLX_RXN" {"ABC-13-CPLX": 1, "G6359-MONOMER": -1, "GLTK-MONOMER": -1, "GLTJ-MONOMER": -1, "GLTL-MONOMER": -2} "glutamate / aspartate ABC transporter" {} "ABC-14-CPLX_RXN" {"ABC-14-CPLX": 1, "HISP-MONOMER": -2, "HISM-MONOMER": -1, "HISQ-MONOMER": -1, "HISJ-MONOMER": -1} "histidine ABC transporter" {} @@ -24,10 +24,10 @@ "ABC-18-CPLX_RXN" {"ABC-18-CPLX": 1, "MGLA-MONOMER": -1, "MGLC-MONOMER": -2, "MGLB-MONOMER": -1} "D-galactose / methyl-β-D-galactoside ABC transporter" {} "ABC-19-CPLX_RXN" {"ABC-19-CPLX": 1, "MODC-MONOMER": -1, "MODB-MONOMER": -2, "MODA-MONOMER": -1} "molybdate ABC transporter" {} "ABC-2-CPLX_RXN" {"ABC-2-CPLX": 1, "ARAG-MONOMER": -2, "ARAH-MONOMER": -2, "ARAF-MONOMER": -1} "arabinose ABC transporter" {} -"ABC-20-CPLX_RXN" {"ABC-20-CPLX": 1, "NIKD-MONOMER": -1, "NIKE-MONOMER": -1, "NIKB-MONOMER": -1, "NIKC-MONOMER": -1, "NIKA-MONOMER": -1} "nickel ABC transporter" {} +"ABC-20-CPLX_RXN" {"ABC-20-CPLX": 1, "NIKD-MONOMER": -1, "NIKE-MONOMER": -1, "NIKB-MONOMER": -1, "NIKC-MONOMER": -1, "NIKA-MONOMER": -1} "Ni(2+) ABC transporter" {} "ABC-21-CPLX_RXN" {"ABC-21-CPLX": 1, "YADG-MONOMER": -1, "YADH-MONOMER": -1} "putative transport complex, ABC superfamily" {} "ABC-22-CPLX_RXN" {"ABC-22-CPLX": 1, "OPPC-MONOMER": -1, "OPPD-MONOMER": -1, "OPPF-MONOMER": -1, "OPPB-MONOMER": -1, "OPPA-MONOMER": -1} "oligopeptide ABC transporter" {} -"ABC-23-CPLX_RXN" {"ABC-23-CPLX": 1, "PHNC-MONOMER": -2, "PHNE-MONOMER": -2, "PHND-MONOMER": -1} "cryptic phosphonate/phosphate ABC transporter" {} +"ABC-23-CPLX_RXN" {"ABC-23-CPLX": 1, "PHNC-MONOMER": -2, "PHNE-MONOMER": -2, "PHND-MONOMER": -1} "phosphonate/phosphate ABC transporter" {} "ABC-24-CPLX_RXN" {"ABC-24-CPLX": 1, "POTA-MONOMER": -2, "POTB-MONOMER": -1, "POTC-MONOMER": -1, "POTD-MONOMER": -1} "spermidine preferential ABC transporter" {} "ABC-25-CPLX_RXN" {"ABC-25-CPLX": 1, "POTG-MONOMER": -2, "POTH-MONOMER": -1, "POTI-MONOMER": -1, "POTF-MONOMER": -1} "putrescine ABC transporter" {} "ABC-26-CPLX_RXN" {"ABC-26-CPLX": 1, "PROV-MONOMER": -2, "PROW-MONOMER": -2, "PROX-MONOMER": -1} "glycine betaine ABC transporter" {} @@ -86,7 +86,7 @@ "ADENYLOSUCCINATE-SYN-DIMER_RXN" {"ADENYLOSUCCINATE-SYN-DIMER": 1, "ADENYLOSUCCINATE-SYN-MONOMER": -2} "adenylosuccinate synthetase" {"MG+2": 1} "ADENYLYLSULFKIN-CPLX_RXN" {"ADENYLYLSULFKIN-CPLX": 1, "ADENYLYLSULFKIN-MONOMER": -2} null {"MG+2": 1} "ADHC-CPLX_RXN" {"ADHC-CPLX": 1, "ADHC-MONOMER": -2} null {"ZN+2": 1} -"ADHE-CPLX_RXN" {"ADHE-CPLX": 1, "ADHE-MONOMER": -40} "fused acetaldehyde-CoA dehydrogenase and iron-dependent alcohol dehydrogenase" {"FE+2": 1, "FE+2": 1, "FE+2": 1} +"ADHE-CPLX_RXN" {"ADHE-CPLX": 1, "ADHE-MONOMER": -40} "fused acetaldehyde-CoA dehydrogenase and Fe-dependent alcohol dehydrogenase" {"FE+2": 1, "FE+2": 1, "FE+2": 1} "AERGLYC3PDEHYDROG-CPLX_RXN" {"AERGLYC3PDEHYDROG-CPLX": 1, "AERGLYC3PDEHYDROG-MONOMER": -2} null {"FAD": 1} "AGMATIN-CPLX_RXN" {"AGMATIN-CPLX": 1, "AGMATIN-MONOMER": -2} null {"MN+2": 1} "AIRS-CPLX_RXN" {"AIRS-CPLX": 1, "AIRS-MONOMER": -2} null {"K+": 1, "MG+2": 1} @@ -155,8 +155,8 @@ "CITTRANS-CPLX_RXN" {"CITTRANS-CPLX": 1, "CITTRANS-MONOMER": -6} "citrate lyase, citrate-acyl carrier protein transferase component" {} "COADTRI-CPLX_RXN" {"COADTRI-CPLX": 1, "PANTEPADENYLYLTRAN-MONOMER": -6} null {"MG+2": 1} "COBU-CPLX_RXN" {"COBU-CPLX": 1, "COBU-MONOMER": -2} null {} -"CPLX-153_RXN" {"CPLX-153": 1, "ASCF-MONOMER": -2} "β-glucoside specific PTS enzyme II" {} -"CPLX-154_RXN" {"CPLX-154": 1, "BGLF-MONOMER": -2} "β-glucoside specific PTS enzyme II / BglG kinase / BglG phosphatase" {} +"CPLX-153_RXN" {"CPLX-153": 1, "ASCF-MONOMER": -2} "cryptic β-glucoside specific PTS enzyme II" {} +"CPLX-154_RXN" {"CPLX-154": 1, "BGLF-MONOMER": -2} "cryptic β-glucoside specific PTS enzyme II / BglG kinase / BglG phosphatase" {} "CPLX-155_RXN" {"CPLX-155": 1, "CELC-MONOMER": -1, "CELB-MONOMER": -1, "CELA-MONOMER": -1} "N,N'-diacetylchitobiose-specific PTS enzyme II" {} "CPLX-156_RXN" {"CPLX-156": 1, "CMTB-MONOMER": -1, "CMTA-MONOMER": -1} "mannitol-specific PTS enzyme II CmtBA" {} "CPLX-157_RXN" {"CPLX-157": 1, "PTSG-MONOMER": -2, "CRR-MONOMER": -1} "glucose-specific PTS enzyme II" {} @@ -168,11 +168,11 @@ "CPLX-167_RXN" {"CPLX-167": 1, "NAGE-MONOMER": -2} "N-acetylglucosamine-specific PTS enzyme II" {} "CPLX-168_RXN" {"CPLX-168": 1, "TREB-MONOMER": -2, "CRR-MONOMER": -1} "trehalose-specific PTS enzyme II" {} "CPLX-169_RXN" {"CPLX-169": 1, "G8210-MONOMER": -1, "GUTB-MONOMER": -1, "GUTA-MONOMER": -1} "sorbitol-specific PTS enzyme II" {} -"CPLX-170_RXN" {"CPLX-170": 1, "AGAB-MONOMER": -1, "AGAC-MONOMER": -1, "AGAD-MONOMER": -1} "galactosamine-specific PTS enzyme II (cryptic)" {} +"CPLX-170_RXN" {"CPLX-170": 1, "AGAB-MONOMER": -1, "AGAC-MONOMER": -1, "AGAD-MONOMER": -1} "cryptic galactosamine-specific PTS enzyme II" {} "CPLX-171_RXN" {"CPLX-171": 1, "G6277-MONOMER": -2} null {} "CPLX-3942_RXN" {"CPLX-3942": 1, "G7712-MONOMER": -2, "G7713-MONOMER": -2, "G7714-MONOMER": -2} "sulfurtransferase complex TusBCD" {} "CPLX-3945_RXN" {"CPLX-3945": 1, "G6544-MONOMER": -9, "G6543-MONOMER": -9} null {} -"CPLX-3946_RXN" {"CPLX-3946": 1, "EG11072-MONOMER": -1, "EG11098-MONOMER": -4} "exodeoxyribonuclease VII" {} +"CPLX-3946_RXN" {"CPLX-3946": 1, "EG11072-MONOMER": -4, "EG11098-MONOMER": -24} "exodeoxyribonuclease VII" {} "CPLX-64_RXN" {"CPLX-64": 1, "G6281-MONOMER": -4} null {"ZN+2": 1, "CO+2": 1} "CPLX-722_RXN" {"CPLX-722": 1, "APPA-MONOMER": -2} "periplasmic phosphoanhydride phosphatase/multiple inositol-polyphosphate phosphatase" {} "CPLX-7524_RXN" {"CPLX-7524": 1, "G6285-MONOMER": -2} "allantoate amidohydrolase" {"MN+2": 1} @@ -185,8 +185,8 @@ "CPLX0-0_RXN" {"CPLX0-0": 1, "EG10244-MONOMER": -3} "primosomal protein DnaT" {} "CPLX0-10157_RXN" {"CPLX0-10157": 1, "G7716-MONOMER": -2} "peptidyl-prolyl cis-trans isomerase/OMP chaperone FkpA" {} "CPLX0-1021_RXN" {"CPLX0-1021": 1, "G6196-MONOMER": -4} "2-methylisocitrate lyase" {"MG+2": 1} -"CPLX0-10307_RXN" {"CPLX0-10307": 1, "PHNK-MONOMER": -2} "PhnK dimer" {} -"CPLX0-10308_RXN" {"CPLX0-10308": 1, "PHNL-MONOMER": -2} "PhnL dimer" {} +"CPLX0-10307_RXN" {"CPLX0-10307": 1, "PHNK-MONOMER": -2} "carbon-phosphorus lyase ATP-binding protein PhnK" {} +"CPLX0-10308_RXN" {"CPLX0-10308": 1, "PHNL-MONOMER": -2} "carbon-phosphorus lyase ATP-binding protein PhnL" {} "CPLX0-10309_RXN" {"CPLX0-10309": 1, "CPLX0-7935": -2} "carbon-phosphorus lyase core complex" {} "CPLX0-10342_RXN" {"CPLX0-10342": 1, "G7313-MONOMER": -2, "CPLX0-3761": -1} "Hda-β-clamp complex" {} "CPLX0-10367_RXN" {"CPLX0-10367": 1, "EG10778-MONOMER": null, "EG10777-MONOMER": null, "EG10776-MONOMER": null} "PspABC complex" {} @@ -197,13 +197,16 @@ "CPLX0-1101_RXN" {"CPLX0-1101": 1, "EG10996-MONOMER": -3} "tRNA-guanine transglycosylase" {"ZN+2": 1} "CPLX0-11183_RXN" {"CPLX0-11183": 1, "EG10967-MONOMER": -2} null {} "CPLX0-1121_RXN" {"CPLX0-1121": 1, "G7845-MONOMER": -2} "23S rRNA 2'-O-ribose G2251 methyltransferase" {} -"CPLX0-11240_RXN" {"CPLX0-11240": 1, "EG11192-MONOMER": -6} null {} +"CPLX0-11240_RXN" {"CPLX0-11240": 1, "EG11192-MONOMER": -6} "putative RNase adaptor protein YicC" {} "CPLX0-11245_RXN" {"CPLX0-11245": 1, "EG12167-MONOMER": -2} null {} +"CPLX0-11302_RXN" {"CPLX0-11302": 1, "TORT-MONOMER": null, "TORS-CPLX": null} "TorTS signaling complex" {} "CPLX0-1141_RXN" {"CPLX0-1141": 1, "EG10941-MONOMER": -10} "selenocysteine synthase" {"PYRIDOXAL_PHOSPHATE": 1} "CPLX0-1142_RXN" {"CPLX0-1142": 1, "G7237-MONOMER": -2} "formyl-CoA transferase" {} "CPLX0-1161_RXN" {"CPLX0-1161": 1, "EG11881-MONOMER": -6} "HslU hexamer" {} "CPLX0-1162_RXN" {"CPLX0-1162": 1, "EG11676-MONOMER": -6} "HslV hexamer" {} "CPLX0-1163_RXN" {"CPLX0-1163": 1, "CPLX0-1161": -2, "CPLX0-1162": -2} "HslVU protease" {} +"CPLX0-11745_RXN" {"CPLX0-11745": 1, "PD01352": -2} "DNA-binding transcriptional dual regulator RutR" {} +"CPLX0-11758_RXN" {"CPLX0-11758": 1, "G6680-MONOMER": -2} "Rac prophage; DNA-binding transcriptional repressor RacR" {} "CPLX0-1221_RXN" {"CPLX0-1221": 1, "G7740-MONOMER": -2} "ADP-sugar diphosphatase NudE" {"MG+2": 1} "CPLX0-1241_RXN" {"CPLX0-1241": 1, "EG11249-MONOMER": -2} "MazF toxin of the MazF-MazE toxin-antitoxin system that exhibits ribonuclease activity" {} "CPLX0-1242_RXN" {"CPLX0-1242": 1, "CPLX0-1241": -2, "CPLX0-841": -1} "MazE-MazF antitoxin/toxin complex / DNA-binding transcriptional repressor" {} @@ -215,7 +218,7 @@ "CPLX0-1421_RXN" {"CPLX0-1421": 1, "EG10113-MONOMER": -24} "bacterioferritin" {} "CPLX0-1441_RXN" {"CPLX0-1441": 1, "EG10255-MONOMER": -2} "serine protease inhibitor ecotin" {} "CPLX0-1461_RXN" {"CPLX0-1461": 1, "EG10438-MONOMER": -6} "RNA-binding protein Hfq" {} -"CPLX0-1521_RXN" {"CPLX0-1521": 1, "EG11415-MONOMER": -12} "stationary phase nucleoid component that sequesters iron and protects DNA from damage" {} +"CPLX0-1521_RXN" {"CPLX0-1521": 1, "EG11415-MONOMER": -12} "stationary phase nucleoid component that sequesters Fe and protects DNA from damage" {} "CPLX0-1541_RXN" {"CPLX0-1541": 1, "EG11090-MONOMER": -2} "5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase" {} "CPLX0-1601_RXN" {"CPLX0-1601": 1, "G6845-MONOMER": -1, "G6846-MONOMER": -1, "G6847-MONOMER": -1, "G6848-MONOMER": -1} "selenate reductase" {} "CPLX0-1621_RXN" {"CPLX0-1621": 1, "EG11299-MONOMER": -2} "RNase G" {} @@ -279,7 +282,7 @@ "CPLX0-254_RXN" {"CPLX0-254": 1, "G7516-MONOMER": -6} null {} "CPLX0-255_RXN" {"CPLX0-255": 1, "G7492-MONOMER": -4} null {"MN+2": 1} "CPLX0-2561_RXN" {"CPLX0-2561": 1, "CPLX0-7696": null, "CPLX0-7697": null} "bacterial condensin MukBEF" {} -"CPLX0-2621_RXN" {"CPLX0-2621": 1, "MONOMER0-1564": -2} "protein HokC" {} +"CPLX0-2621_RXN" {"CPLX0-2621": 1, "MONOMER0-1564": -2} "small toxic polypeptide HokC" {} "CPLX0-263_RXN" {"CPLX0-263": 1, "MONOMER0-2": -2, "MONOMER0-3": -2} "isoaspartyl dipeptidase / asparaginase 3" {} "CPLX0-2641_RXN" {"CPLX0-2641": 1, "EG10461-MONOMER": -2} "chaperone protein HtpG" {} "CPLX0-2661_RXN" {"CPLX0-2661": 1, "EG10574-MONOMER": -12, "EG10575-MONOMER": -2} "McrBC restriction endonuclease" {"MG+2": 1, "GTP": 1} @@ -314,7 +317,7 @@ "CPLX0-3281_RXN" {"CPLX0-3281": 1, "EG10857-MONOMER": -2} "RNase III" {"MG+2": 1} "CPLX0-3301_RXN" {"CPLX0-3301": 1, "EG11111-MONOMER": -2} "DNA replication inhibitor CspD" {} "CPLX0-3361_RXN" {"CPLX0-3361": 1, "NUOB-MONOMER": -1, "NUOC-MONOMER": -1, "NUOE-MONOMER": -1, "NUOF-MONOMER": -1, "NUOG-MONOMER": -1, "NUOI-MONOMER": -1} "NADH:quinone oxidoreductase I, peripheral arm" {} -"CPLX0-3382_RXN" {"CPLX0-3382": 1, "G7702-MONOMER": null, "G7703-MONOMER": null, "G7704-MONOMER": null, "G7705-MONOMER": null, "G7706-MONOMER": null, "G7707-MONOMER": null, "G7708-MONOMER": null, "G7709-MONOMER": null, "G7710-MONOMER": null, "G7711-MONOMER": null, "EG12173-MONOMER": null} "type II secretion system" {} +"CPLX0-3382_RXN" {"CPLX0-3382": 1, "G7702-MONOMER": null, "G7703-MONOMER": null, "G7704-MONOMER": null, "G7705-MONOMER": null, "G7706-MONOMER": null, "G7707-MONOMER": null, "G7708-MONOMER": null, "G7709-MONOMER": null, "G7710-MONOMER": null, "G7711-MONOMER": null, "EG12173-MONOMER": null} "cryptic type II secretion system" {} "CPLX0-3401_RXN" {"CPLX0-3401": 1, "EG10308-MONOMER": null, "EG10313-MONOMER": null, "EG10314-MONOMER": null, "EG10315-MONOMER": null} "fimbrial complex" {} "CPLX0-341_RXN" {"CPLX0-341": 1, "EG10004-MONOMER": -12} "fused 4'-phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase" {"MG+2": 1, "FMN": 1} "CPLX0-3461_RXN" {"CPLX0-3461": 1, "EG10859-MONOMER": -4} "ribonuclease E" {"MG+2": 1, "MG+2": 1, "MG+2": 1, "MG+2": 1, "MG+2": 1, "MG+2": 1, "MG+2": 1} @@ -322,7 +325,7 @@ "CPLX0-3501_RXN" {"CPLX0-3501": 1, "G7452-MONOMER": -2} "7-cyano-7-deazaguanine reductase" {} "CPLX0-3521_RXN" {"CPLX0-3521": 1, "EG10743-MONOMER": -3} "polynucleotide phosphorylase" {"MG+2": 1} "CPLX0-3541_RXN" {"CPLX0-3541": 1, "EG10844-MONOMER": -2} "ATP-dependent RNA helicase RhlB" {"MG+2": 1} -"CPLX0-3561_RXN" {"CPLX0-3561": 1, "EG10484-MONOMER": -2} "hydrogenase isozymes nickel incorporation protein HypB" {} +"CPLX0-3561_RXN" {"CPLX0-3561": 1, "EG10484-MONOMER": -2} "hydrogenase isozymes Ni(2+) incorporation protein HypB" {} "CPLX0-3581_RXN" {"CPLX0-3581": 1, "EG11852-MONOMER": -2} "D-aminoacyl-tRNA deacylase" {} "CPLX0-3601_RXN" {"CPLX0-3601": 1, "G7175-MONOMER": -2} "ribonuclease BN" {"MG+2": 1, "CO+2": 1} "CPLX0-3602_RXN" {"CPLX0-3602": 1, "EG11547-MONOMER": -2} "ribonuclease T" {"MG+2": 1} @@ -335,7 +338,7 @@ "CPLX0-3761_RXN" {"CPLX0-3761": 1, "EG10242-MONOMER": -2} "β sliding clamp" {} "CPLX0-3781_RXN" {"CPLX0-3781": 1, "MONOMER0-1041": -1, "EG12844-MONOMER": -2} "YefM-YoeB antitoxin/toxin complex / DNA-binding transcriptional repressor" {} "CPLX0-3801_RXN" {"CPLX0-3801": 1, "EG10245-MONOMER": -3, "EG11500-MONOMER": -1, "EG11412-MONOMER": -1} "DNA polymerase III, preinitiation complex" {} -"CPLX0-3802_RXN" {"CPLX0-3802": 1, "EG10245-MONOMER": -2} "DNA polymerase III, τ subunit dimer" {} +"CPLX0-3802_RXN" {"CPLX0-3802": 1, "EG10245-MONOMER": -2} "DNA polymerase III subunit τ dimer" {} "CPLX0-3803_RXN" {"CPLX0-3803": 1, "CPLX0-2361": -3, "CPLX0-3801": -1, "CPLX0-3761": -2, "CPLX0-3802": -1, "CPLX0-7910": -4} "DNA polymerase III, holoenzyme" {} "CPLX0-3821_RXN" {"CPLX0-3821": 1, "EG10483-MONOMER": -1, "EG10484-MONOMER": -1} "HypA-HypB heterodimer" {} "CPLX0-3841_RXN" {"CPLX0-3841": 1, "EG11294-MONOMER": -2} null {"MG+2": 1} @@ -412,12 +415,11 @@ "CPLX0-7597_RXN" {"CPLX0-7597": 1, "EG10375-MONOMER": -2} "5-carboxymethylaminomethyluridine-tRNA synthase subunit MnmG" {} "CPLX0-7608_RXN" {"CPLX0-7608": 1, "EG10997-MONOMER": -2} "5-carboxymethylaminomethyluridine-tRNA synthase GTPase subunit" {} "CPLX0-7609_RXN" {"CPLX0-7609": 1, "CPLX0-7608": -1, "CPLX0-7597": -1} null {"FAD": 1, "FAD": 1, "FAD": 1} -"CPLX0-7610_RXN" {"CPLX0-7610": 1, "G7632-MONOMER": null, "G7633-MONOMER": null} "N-acetyl-D-galactosamine specific PTS (cryptic)" {} "CPLX0-7613_RXN" {"CPLX0-7613": 1, "G7286-MONOMER": -6} "putative ethanolamine catabolic microcompartment shell protein EutN" {} "CPLX0-7614_RXN" {"CPLX0-7614": 1, "ATPPHOSRIBOSTRANS-MONOMER": -2} "ATP phosphoribosyltransferase" {} "CPLX0-7615_RXN" {"CPLX0-7615": 1, "KDGALDOL-MONOMER": -6} null {"MG+2": 1} "CPLX0-7616_RXN" {"CPLX0-7616": 1, "G6278-MONOMER": -4} "tartronate semialdehyde reductase 2" {} -"CPLX0-7617_RXN" {"CPLX0-7617": 1, "EG12332-MONOMER": -2} "iron-sulfur cluster insertion protein ErpA" {} +"CPLX0-7617_RXN" {"CPLX0-7617": 1, "EG12332-MONOMER": -2} "[Fe-S] cluster insertion protein ErpA" {} "CPLX0-761_RXN" {"CPLX0-761": 1, "G7485-MONOMER": null, "G7486-MONOMER": null, "G7487-MONOMER": null} "putative xanthine dehydrogenase" {"CPD-23445": 1} "CPLX0-7622_RXN" {"CPLX0-7622": 1, "LSERINEDEAM3-MONOMER": -2} "L-serine deaminase III" {"CPD-7": 1} "CPLX0-7623_RXN" {"CPLX0-7623": 1, "G6606-MONOMER": -2} "putative two-component system connector protein AriR" {} @@ -456,7 +458,7 @@ "CPLX0-7675_RXN" {"CPLX0-7675": 1, "G6988-MONOMER": -3} "2Fe-2S cluster-containing protein YeaW" {} "CPLX0-7678_RXN" {"CPLX0-7678": 1, "CPLX0-7677": -2} "ZntR-Zn2+ DNA-binding transcriptional activator" {} "CPLX0-7679_RXN" {"CPLX0-7679": 1, "EG11929-MONOMER": -2} "DNA-binding transcriptional repressor Zur" {} -"CPLX0-7682_RXN" {"CPLX0-7682": 1, "G7748-MONOMER": -2} "iron-sulfur cluster carrier protein NfuA" {} +"CPLX0-7682_RXN" {"CPLX0-7682": 1, "G7748-MONOMER": -2} "[Fe-S] cluster carrier protein NfuA" {} "CPLX0-7683_RXN" {"CPLX0-7683": 1, "EG11845-MONOMER": -6} "sulfoquinovose isomerase" {} "CPLX0-7684_RXN" {"CPLX0-7684": 1, "G7405-MONOMER": null, "G7406-MONOMER": null} "L-valine exporter" {} "CPLX0-7685_RXN" {"CPLX0-7685": 1, "HYPOXANPRIBOSYLTRAN-MONOMER": -4} "hypoxanthine phosphoribosyltransferase" {"MG+2": 1, "MG+2": 1} @@ -516,7 +518,7 @@ "CPLX0-7789_RXN" {"CPLX0-7789": 1, "EG12855-MONOMER": -4} "macrodomain Ter protein" {} "CPLX0-7791_RXN" {"CPLX0-7791": 1, "EG10836-MONOMER": -4, "EG11131-MONOMER": -4} "RelB-RelE antitoxin/toxin complex / DNA-binding transcriptional repressor" {} "CPLX0-7794_RXN" {"CPLX0-7794": 1, "EG11847-MONOMER": -4} "3-sulfolactaldehyde reductase" {} -"CPLX0-7795_RXN" {"CPLX0-7795": 1, "PHOSPHO-KDPE": -2} "DNA-binding transcriptional activator KdpE-phosphorylated" {} +"CPLX0-7795_RXN" {"CPLX0-7795": 1, "PHOSPHO-KDPE": -2} "DNA-binding transcriptional dual regulator KdpE-phosphorylated" {} "CPLX0-7796_RXN" {"CPLX0-7796": 1, "MONOMER0-157": -2} "DNA-binding transcriptional repressor MetJ-S-adenosyl-L-methionine" {} "CPLX0-7797_RXN" {"CPLX0-7797": 1, "PD00197": -2} "DNA-binding transcriptional dual regulator FNR" {} "CPLX0-7801_RXN" {"CPLX0-7801": 1, "G7271-MONOMER": -3} "predicted structural protein, ethanolamine utilization microcompartment" {} @@ -533,7 +535,7 @@ "CPLX0-7820_RXN" {"CPLX0-7820": 1, "G6804-MONOMER": -10} "3-hydroxy-2,4-pentadione 5-phosphate thiolase" {} "CPLX0-7822_RXN" {"CPLX0-7822": 1, "G7571-MONOMER": -2, "G7572-MONOMER": -2} "MqsA-MqsR antitoxin/toxin complex" {} "CPLX0-7823_RXN" {"CPLX0-7823": 1, "G6783-MONOMER": null, "G6784-MONOMER": null} "DosC-DosP complex" {} -"CPLX0-7824_RXN" {"CPLX0-7824": 1, "EG11378-MONOMER": -2} "iron-sulfur cluster insertion protein SufA" {} +"CPLX0-7824_RXN" {"CPLX0-7824": 1, "EG11378-MONOMER": -2} "[Fe-S] cluster insertion protein SufA" {} "CPLX0-7826_RXN" {"CPLX0-7826": 1, "G7530-MONOMER": -2} "dITP/XTP pyrophosphatase" {"MG+2": 1, "MG+2": 1, "MG+2": 1} "CPLX0-7827_RXN" {"CPLX0-7827": 1, "G6326-MONOMER": -2} "putative glutamate—cysteine ligase 2" {} "CPLX0-782_RXN" {"CPLX0-782": 1, "EG11306-MONOMER": -2} "lipoyl synthase" {"CPD-7": 1} @@ -561,7 +563,7 @@ "CPLX0-7889_RXN" {"CPLX0-7889": 1, "EG11211-MONOMER": -2} "EF-P-lysine lysyltransferase" {} "CPLX0-7904_RXN" {"CPLX0-7904": 1, "EG12030-MONOMER": -4} "pyrimidine-specific ribonucleoside hydrolase RihB" {"CA+2": 1} "CPLX0-7906_RXN" {"CPLX0-7906": 1, "CAIT-MONOMER": -3} null {} -"CPLX0-7908_RXN" {"CPLX0-7908": 1, "EG12132-MONOMER": -4} "iron-sulfur cluster insertion protein IscA" {} +"CPLX0-7908_RXN" {"CPLX0-7908": 1, "EG12132-MONOMER": -4} "[Fe-S] cluster insertion protein IscA" {} "CPLX0-7909_RXN" {"CPLX0-7909": 1, "G7366-MONOMER": null, "G7365-MONOMER": null} "RnlA-RnlB toxin-antitoxin complex" {} "CPLX0-7910_RXN" {"CPLX0-7910": 1, "EG11413-MONOMER": -1, "EG11414-MONOMER": -1} "DNA polymerase III, ψ-χ dimer" {} "CPLX0-7912_RXN" {"CPLX0-7912": 1, "G7288-MONOMER": -2} "phosphate acetyltransferase EutD" {} @@ -578,11 +580,11 @@ "CPLX0-7932_RXN" {"CPLX0-7932": 1, "CYTDEAM-MONOMER": -6} "cytosine/isoguanine deaminase" {"FE+2": 1} "CPLX0-7933_RXN" {"CPLX0-7933": 1, "G7489-MONOMER": -3} "putative carbamoyltransferase YgeW" {} "CPLX0-7934_RXN" {"CPLX0-7934": 1, "EG10342-MONOMER": null, "G7424-MONOMER": null, "EG11086-MONOMER": null} "FtsLBQ cell division complex" {} -"CPLX0-7935_RXN" {"CPLX0-7935": 1, "EG10719-MONOMER": -1, "EG10718-MONOMER": -1, "EG10717-MONOMER": -1, "EG10716-MONOMER": -1} "carbon-phosphorus lyase core complex monomer" {"CPD-7": 2} +"CPLX0-7935_RXN" {"CPLX0-7935": 1, "EG10719-MONOMER": -1, "EG10718-MONOMER": -1, "EG10717-MONOMER": -1, "EG10716-MONOMER": -1} "carbon-phosphorus lyase core complex" {"CPD-7": 2} "CPLX0-7936_RXN" {"CPLX0-7936": 1, "EG10725-MONOMER": -2} null {"MN+2": 1} "CPLX0-7938_RXN" {"CPLX0-7938": 1, "PTSI-MONOMER": -2} "PTS enzyme I" {"MG+2": 1} "CPLX0-7939_RXN" {"CPLX0-7939": 1, "EG11568-MONOMER": -2} "regulator of KefC-mediated potassium transport and quinone oxidoreductase" {"FMN": 1} -"CPLX0-7940_RXN" {"CPLX0-7940": 1, "G6140-MONOMER": -4} "CP4-6 prophage; putative 2-dehydro-3-deoxygluconate aldolase" {} +"CPLX0-7940_RXN" {"CPLX0-7940": 1, "G6140-MONOMER": -4} "CP4-6 prophage; 2-dehydro-3-deoxygluconate aldolase" {} "CPLX0-7942_RXN" {"CPLX0-7942": 1, "EG10125-MONOMER": -1, "EG12181-MONOMER": -1} "Grx4-BolA complex" {} "CPLX0-7944_RXN" {"CPLX0-7944": 1, "MONOMER0-341": -2} "outer membrane phospholipase A" {"CA+2": 1, "CA+2": 1} "CPLX0-7945_RXN" {"CPLX0-7945": 1, "G6540-MONOMER": -3} "zinc-binding phosphatase YcdX" {} @@ -674,7 +676,7 @@ "CPLX0-8129_RXN" {"CPLX0-8129": 1, "G6303-MONOMER": -2} "DLP12 prophage; DNA base-flipping protein" {} "CPLX0-8152_RXN" {"CPLX0-8152": 1, "EG12347-MONOMER": -2, "G7037-MONOMER": -2, "G7039-MONOMER": -1} "cystine ABC transporter" {} "CPLX0-8154_RXN" {"CPLX0-8154": 1, "G7880-MONOMER": -2} "c-di-GMP-binding biofilm dispersal mediator protein" {} -"CPLX0-8155_RXN" {"CPLX0-8155": 1, "G7816-MONOMER": -2} "periplasmic protein CpxP" {} +"CPLX0-8155_RXN" {"CPLX0-8155": 1, "G7816-MONOMER": -2} "periplasmic protein involved in stress resistence" {} "CPLX0-8156_RXN" {"CPLX0-8156": 1, "EG10698-MONOMER": -2} null {"MN+2": 1} "CPLX0-8157_RXN" {"CPLX0-8157": 1, "EG10680-MONOMER": -2} "osmotically inducible peroxiredoxin OsmC" {} "CPLX0-8158_RXN" {"CPLX0-8158": 1, "DLACTDEHYDROGNAD-MONOMER": -4} "D-lactate dehydrogenase" {} @@ -690,7 +692,7 @@ "CPLX0-8175_RXN" {"CPLX0-8175": 1, "EG11859-MONOMER": -2} "sulfurtransferase for molybdenum cofactor sulfuration" {} "CPLX0-8176_RXN" {"CPLX0-8176": 1, "G7456-MONOMER": -2} null {} "CPLX0-8177_RXN" {"CPLX0-8177": 1, "MONOMER0-1701": -2} "putative phosphatidylethanolamine synthesis regulator GnsA" {} -"CPLX0-8180_RXN" {"CPLX0-8180": 1, "EG10157-MONOMER": -6} "protein disaggregase ClpB" {} +"CPLX0-8180_RXN" {"CPLX0-8180": 1, "EG10157-MONOMER": -6} "protein disaggregase" {} "CPLX0-8181_RXN" {"CPLX0-8181": 1, "G6991-MONOMER": -1, "EG11171-MONOMER": -1} "N6-L-threonylcarbamoyladenine synthase, TsaB-TsaD dimer subunit" {"ZN+2": 1} "CPLX0-8182_RXN" {"CPLX0-8182": 1, "EG11757-MONOMER": -1, "CPLX0-8181": null} "N6-L-threonylcarbamoyladenine synthase" {} "CPLX0-8183_RXN" {"CPLX0-8183": 1, "EG11652-MONOMER": -3} null {} @@ -755,13 +757,13 @@ "CPLX0-8275_RXN" {"CPLX0-8275": 1, "G7345-MONOMER": -2} "histidine kinase GlrK" {} "CPLX0-8280_RXN" {"CPLX0-8280": 1, "G6358-MONOMER": -4} "pyrimidine-specific ribonucleoside hydrolase RihA" {} "CPLX0-8281_RXN" {"CPLX0-8281": 1, "G6865-MONOMER": -2} "DUF945 domain-containing protein YdgA" {} -"CPLX0-8285_RXN" {"CPLX0-8285": 1, "OMPR-MONOMER": -2} "OmpR dimer" {} +"CPLX0-8285_RXN" {"CPLX0-8285": 1, "OMPR-MONOMER": -2} "DNA-binding transcriptional dual regulator OmpR" {} "CPLX0-8288_RXN" {"CPLX0-8288": 1, "G6318-MONOMER": -2} "sensor histidine kinase CusS" {} "CPLX0-8290_RXN" {"CPLX0-8290": 1, "G7248-MONOMER": -2} "aminopeptidase YpdF" {"MN+2": 1, "NI+2": 1, "CO+2": 1} "CPLX0-8291_RXN" {"CPLX0-8291": 1, "G7531-MONOMER": -2} "heme chaperone HemW" {} "CPLX0-8292_RXN" {"CPLX0-8292": 1, "GLUCONREDUCT-MONOMER": -2} null {} "CPLX0-8299_RXN" {"CPLX0-8299": 1, "PRPPSYN-MONOMER": -6} null {} -"CPLX0-8300_RXN" {"CPLX0-8300": 1, "MONOMER0-4521": -2} "PBP1Bγ" {} +"CPLX0-8300_RXN" {"CPLX0-8300": 1, "MONOMER0-4521": -2} "PBP-1Bgamma" {} "CPLX0-8301_RXN" {"CPLX0-8301": 1, "G7582-MONOMER": null, "EG11474-MONOMER": null, "EG11333-MONOMER": null, "OCTAPRENYL-METHOXYPHENOL-OH-MONOMER": null, "DHHB-METHYLTRANSFER-MONOMER": null, "OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-MON": null, "2-OCTAPRENYL-METHOXY-BENZOQ-METH-MONOMER": null} "Ubi complex" {"ZN+2": 1} "CPLX0-8302_RXN" {"CPLX0-8302": 1, "BARA-MONOMER": -2} "sensor histidine kinase BarA" {} "CPLX0-8303_RXN" {"CPLX0-8303": 1, "G6520-MONOMER": -2} "putative aminoacrylate hydrolase RutD" {} @@ -771,14 +773,14 @@ "CPLX0-8311_RXN" {"CPLX0-8311": 1, "MONOMER0-1041": -2} "ribosome-dependent mRNA interferase toxin YoeB" {} "CPLX0-8312_RXN" {"CPLX0-8312": 1, "G6494-MONOMER": null, "PD00257": null} "DNA-binding transcriptional repressor CRP-Sxy" {} "CPLX0-8314_RXN" {"CPLX0-8314": 1, "EVGS-MONOMER": -2} "sensor histidine kinase EvgS" {} -"CPLX0-8315_RXN" {"CPLX0-8315": 1, "EG10574-MONOMER": -6} "McrB hexamer" {} +"CPLX0-8315_RXN" {"CPLX0-8315": 1, "EG10574-MONOMER": -6} "Type IV methyl-directed restriction enzyme EcoKMcrB" {} "CPLX0-841_RXN" {"CPLX0-841": 1, "EG10571-MONOMER": -2} "MazE antitoxin of the MazF-MazE toxin-antitoxin system / DNA-binding transcriptional repressor" {} "CPLX0-8535_RXN" {"CPLX0-8535": 1, "EG12396-MONOMER": -2} "diguanylate cyclase DgcE" {} "CPLX0-8536_RXN" {"CPLX0-8536": 1, "EG11210-MONOMER": null} "regulator of diguanylate cyclase RdcA" {} "CPLX0-8537_RXN" {"CPLX0-8537": 1, "GALACTARDEHYDRA-MONOMER": -2} "galactarate dehydratase" {"FE+2": 1} "CPLX0-8538_RXN" {"CPLX0-8538": 1, "G6708-MONOMER": -6} null {} "CPLX0-8539_RXN" {"CPLX0-8539": 1, "G7689-MONOMER": -1, "EG10741-MONOMER": -1} "metalloprotease TldDE" {"FE+2": 1, "ZN+2": 1} -"CPLX0-8541_RXN" {"CPLX0-8541": 1, "G6414-MONOMER": null, "CPLX0-1923": null} "iron-catecholate outer membrane transport complex I" {} +"CPLX0-8541_RXN" {"CPLX0-8541": 1, "G6414-MONOMER": null, "CPLX0-1923": null} "Fe-catecholate outer membrane transport complex I" {} "CPLX0-8542_RXN" {"CPLX0-8542": 1, "G6174-MONOMER": -2} "cupric reductase RclA" {} "CPLX0-8544_RXN" {"CPLX0-8544": 1, "G7901-MONOMER": -2} "KpLE2 phage-like element; 2,7-anhydro-N-acetylneuraminate hydratase" {"NAD": 1, "NAD": 1} "CPLX0-8545_RXN" {"CPLX0-8545": 1, "EG10202-MONOMER": -2} "peptidoglycan DD endopeptidase DacB" {} @@ -787,7 +789,7 @@ "CPLX0-8549_RXN" {"CPLX0-8549": 1, "EG11436-MONOMER": -2} "NADPH-dependent aldehyde reductase Ahr" {"ZN+2": 1} "CPLX0-8550_RXN" {"CPLX0-8550": 1, "G6577-MONOMER": -2} "protein-lysine deacetylase/desuccinylase/delipoylase" {"NAD": 1} "CPLX0-8551_RXN" {"CPLX0-8551": 1, "G7007-MONOMER": -6} "lipophilic envelope spanning tunnel" {} -"CPLX0-8553_RXN" {"CPLX0-8553": 1, "CPLX0-1923": null, "EG10155-MONOMER": -1} "iron-catecholate outer membrane transport complex II" {} +"CPLX0-8553_RXN" {"CPLX0-8553": 1, "CPLX0-1923": null, "EG10155-MONOMER": -1} "Fe-catecholate outer membrane transport complex II" {} "CPLX0-8554_RXN" {"CPLX0-8554": 1, "G6652-MONOMER": -4} null {"MN+2": 1} "CPLX0-8555_RXN" {"CPLX0-8555": 1, "EG12256-MONOMER": -2} "cyclic di-GMP phosphodiesterase PdeK" {} "CPLX0-8556_RXN" {"CPLX0-8556": 1, "EG11257-MONOMER": -2} "diguanylate cyclase DgcC" {"MN+2": 1} diff --git a/reconstruction/ecoli/flat/dna_sites.tsv b/reconstruction/ecoli/flat/dna_sites.tsv index b8cfb7b90..fcf38cf6c 100644 --- a/reconstruction/ecoli/flat/dna_sites.tsv +++ b/reconstruction/ecoli/flat/dna_sites.tsv @@ -1,7 +1,7 @@ # Organism: Escherichia coli K-12 substr. MG1655 # Database: EcoCyc -# Version: 28.1 -# Date and time generated: March 7, 2024, 13:55:40 +# Version: 28.5 +# Date and time generated: July 19, 2024, 9:40:35 "id" "common_name" "synonyms" "type" "left_end_pos" "right_end_pos" "direction" "BS-7046" null [] "dna-binding-site" 1825765 1825784 null "BS-7048" null [] "dna-binding-site" 3169748 3169760 null @@ -457,7 +457,6 @@ "BS0-10549" null [] "dna-binding-site" null null null "BS0-10550" null [] "dna-binding-site" null null null "BS0-10551" null [] "dna-binding-site" 2861282 2861312 null -"BS0-10555" null [] "dna-binding-site" null null null "BS0-10556" null [] "dna-binding-site" null null null "BS0-10557" null [] "dna-binding-site" null null null "BS0-10558" null [] "dna-binding-site" null null null @@ -788,6 +787,92 @@ "BS0-10898" null [] "dna-binding-site" null null null "BS0-10899" null [] "dna-binding-site" null null null "BS0-10900" null [] "dna-binding-site" 3154549 3154567 null +"BS0-10901" null [] "dna-binding-site" 3467054 3467072 null +"BS0-10902" null [] "dna-binding-site" 3853293 3853313 null +"BS0-10903" null [] "dna-binding-site" null null null +"BS0-10904" null [] "dna-binding-site" null null null +"BS0-10905" null [] "dna-binding-site" 1986437 1986455 null +"BS0-10907" null [] "dna-binding-site" 3384515 3384535 null +"BS0-10908" null [] "dna-binding-site" 618106 618126 null +"BS0-10909" null [] "dna-binding-site" 1988571 1988589 null +"BS0-10910" null [] "dna-binding-site" 1986708 1986726 null +"BS0-10911" null [] "dna-binding-site" 2659178 2659196 null +"BS0-10912" null [] "dna-binding-site" 28282 28302 null +"BS0-10913" null [] "dna-binding-site" 2248537 2248557 null +"BS0-10914" null [] "dna-binding-site" 2240704 2240722 null +"BS0-10915" null [] "dna-binding-site" 2306863 2306883 null +"BS0-10916" null [] "dna-binding-site" 1544159 1544177 null +"BS0-10917" null [] "dna-binding-site" 2800475 2800495 null +"BS0-10918" null [] "dna-binding-site" 1305553 1305571 null +"BS0-10919" null [] "dna-binding-site" 1084889 1084909 null +"BS0-10920" null [] "dna-binding-site" 2751692 2751712 null +"BS0-10921" null [] "dna-binding-site" 1996981 1996999 null +"BS0-10922" null [] "dna-binding-site" 2655240 2655258 null +"BS0-10923" null [] "dna-binding-site" 1021094 1021114 null +"BS0-10924" null [] "dna-binding-site" 1244615 1244633 null +"BS0-10925" null [] "dna-binding-site" null null null +"BS0-10926" null [] "dna-binding-site" null null null +"BS0-10927" null [] "dna-binding-site" 432313 432331 null +"BS0-10928" null [] "dna-binding-site" null null null +"BS0-10929" null [] "dna-binding-site" null null null +"BS0-10930" null [] "dna-binding-site" null null null +"BS0-10931" null [] "dna-binding-site" 755716 755734 null +"BS0-10932" null [] "dna-binding-site" 757459 757477 null +"BS0-10933" null [] "dna-binding-site" null null null +"BS0-10934" null [] "dna-binding-site" 816796 816816 null +"BS0-10935" null [] "dna-binding-site" 839301 839321 null +"BS0-10936" null [] "dna-binding-site" 842256 842276 null +"BS0-10937" null [] "dna-binding-site" 853117 853135 null +"BS0-10938" null [] "dna-binding-site" 891711 891731 null +"BS0-10939" null [] "dna-binding-site" 939292 939310 null +"BS0-10940" null [] "dna-binding-site" 943384 943402 null +"BS0-10941" null [] "dna-binding-site" 1487091 1487111 null +"BS0-10942" null [] "dna-binding-site" 1579619 1579639 null +"BS0-10943" null [] "dna-binding-site" 1577852 1577872 null +"BS0-10944" null [] "dna-binding-site" 1582718 1582738 null +"BS0-10945" null [] "dna-binding-site" 3216699 3216719 null +"BS0-10946" null [] "dna-binding-site" 3348297 3348317 null +"BS0-10947" null [] "dna-binding-site" null null null +"BS0-10948" null [] "dna-binding-site" null null null +"BS0-10949" null [] "dna-binding-site" null null null +"BS0-10950" null [] "dna-binding-site" null null null +"BS0-10951" null [] "dna-binding-site" null null null +"BS0-10952" null [] "dna-binding-site" null null null +"BS0-10954" null [] "dna-binding-site" 2079491 2079506 null +"BS0-10955" null [] "dna-binding-site" 4466238 4466264 null +"BS0-10956" null [] "dna-binding-site" 3511002 3511032 null +"BS0-10957" null [] "dna-binding-site" null null null +"BS0-10958" null [] "dna-binding-site" null null null +"BS0-10959" null [] "dna-binding-site" 2405347 2405383 null +"BS0-10960" null [] "dna-binding-site" 167422 167442 null +"BS0-10961" null [] "dna-binding-site" null null null +"BS0-10963" null [] "dna-binding-site" null null null +"BS0-10964" null [] "dna-binding-site" null null null +"BS0-10965" null [] "dna-binding-site" 1139933 1139951 null +"BS0-10966" null [] "dna-binding-site" 3113359 3113377 null +"BS0-10967" null [] "dna-binding-site" null null null +"BS0-10968" null [] "dna-binding-site" 2800713 2800733 null +"BS0-10969" null [] "dna-binding-site" 4551436 4551454 null +"BS0-10970" null [] "dna-binding-site" 4572191 4572211 null +"BS0-10971" null [] "dna-binding-site" 4572197 4572217 null +"BS0-10972" null [] "dna-binding-site" 1335455 1335475 null +"BS0-10973" null [] "dna-binding-site" 1215669 1215683 null +"BS0-10974" null [] "dna-binding-site" 1081279 1081299 null +"BS0-10975" null [] "dna-binding-site" null null null +"BS0-10976" null [] "dna-binding-site" null null null +"BS0-10977" null [] "dna-binding-site" null null null +"BS0-10978" null [] "dna-binding-site" 4455684 4455700 null +"BS0-10979" null [] "dna-binding-site" null null null +"BS0-10980" null [] "dna-binding-site" null null null +"BS0-10981" null [] "dna-binding-site" null null null +"BS0-10982" null [] "dna-binding-site" null null null +"BS0-10983" null [] "dna-binding-site" null null null +"BS0-10984" null [] "dna-binding-site" null null null +"BS0-10985" null [] "dna-binding-site" 3244801 3244815 null +"BS0-10986" null [] "dna-binding-site" 3896716 3896728 null +"BS0-10987" null [] "dna-binding-site" null null null +"BS0-10988" null [] "dna-binding-site" null null null +"BS0-10989" null [] "dna-binding-site" null null null "BS0-11" null [] "dna-binding-site" 2751727 2751746 null "BS0-1121" null [] "dna-binding-site" 3493838 3493852 null "BS0-1122" null [] "dna-binding-site" 963666 963678 null @@ -1436,7 +1521,7 @@ "BS0-6955" null [] "dna-binding-site" 624791 624812 null "BS0-6956" null [] "dna-binding-site" 624836 624850 null "BS0-6957" null [] "dna-binding-site" 612699 612720 null -"BS0-6958" null [] "dna-binding-site" 612659 612673 null +"BS0-6958" null [] "dna-binding-site" 612656 612676 null "BS0-6959" null [] "dna-binding-site" 841796 841817 null "BS0-6960" null [] "dna-binding-site" 1688832 1688853 null "BS0-6961" null [] "dna-binding-site" 987203 987224 null @@ -2417,7 +2502,7 @@ "BS0-8247" null [] "dna-binding-site" 2949214 2949231 null "BS0-8248" null [] "dna-binding-site" 771254 771271 null "BS0-8249" null [] "dna-binding-site" 771225 771242 null -"BS0-8250" null [] "dna-binding-site" 1862001 1862018 null +"BS0-8250" null [] "dna-binding-site" 1862002 1862017 null "BS0-8251" null [] "dna-binding-site" 332017 332034 null "BS0-8252" null [] "dna-binding-site" 2908674 2908691 null "BS0-8253" null [] "dna-binding-site" 1686680 1686699 null @@ -3762,7 +3847,7 @@ "BS00397" null [] "dna-binding-site" 624721 624735 null "BS00399" null [] "dna-binding-site" 4518287 4518305 null "BS00400" null [] "dna-binding-site" 624722 624740 null -"BS00401" null [] "dna-binding-site" 1311026 1311044 null +"BS00401" null [] "dna-binding-site" 1311025 1311045 null "BS00403" null [] "dna-binding-site" 2241764 2241779 null "BS00404" null [] "dna-binding-site" 2240618 2240633 null "BS00405" null [] "dna-binding-site" null null null diff --git a/reconstruction/ecoli/flat/equilibrium_reactions.tsv b/reconstruction/ecoli/flat/equilibrium_reactions.tsv index 2fd6b8559..992afc0f1 100644 --- a/reconstruction/ecoli/flat/equilibrium_reactions.tsv +++ b/reconstruction/ecoli/flat/equilibrium_reactions.tsv @@ -1,7 +1,7 @@ # Organism: Escherichia coli K-12 substr. MG1655 # Database: EcoCyc -# Version: 28.1 -# Date and time generated: March 7, 2024, 13:55:41 +# Version: 28.5 +# Date and time generated: July 19, 2024, 9:40:36 "id" "stoichiometry" "common_name" "CPLX-123_RXN" {"CPLX-123": 1, "PC00033": null, "HYPOXANTHINE": null} "DNA-binding transcriptional repressor PurR-hypoxanthine" "CPLX-124_CPD0-1112_RXN" {"CPLX-124": 1, "CPD0-1112": null, "PC00086": null} "RhaS-L-rhamnose DNA-binding transcriptional activator" @@ -14,6 +14,8 @@ "CPLX0-10427_RXN" {"CPLX0-10427": 1, "G6812-MONOMER": null, "GLT": null} "PtrR-glt" "CPLX0-10428_RXN" {"CPLX0-10428": 1, "G6812-MONOMER": null, "GLN": null} "DNA-binding transcriptional regulator PtrR-L-glutamine" "CPLX0-10669_RXN" {"CPLX0-10669": 1, "CPLX0-7672": null, "MN+2": null} "MntR-Mn2+" +"CPLX0-11559_RXN" {"CPLX0-11559": 1, "G7133-MONOMER": null, "ADP-D-GLUCOSE": null} "YegW-ADP-α-D-glucose" +"CPLX0-11744_RXN" {"CPLX0-11744": 1, "CPLX0-7796": null, "S-ADENOSYLMETHIONINE": null} "MetJ-SAM-AdoMet" "CPLX0-226_RXN" {"CPLX0-226": 1, "PC00004": null, "CAMP": null} "CRP-cyclic-AMP DNA-binding transcriptional dual regulator" "CPLX0-228_RXN" {"CPLX0-228": 1, "PC00005": null, "ARG": null} "ArgR-L-arginine DNA-binding transcriptional dual regulator" "CPLX0-2781_RXN" {"CPLX0-2781": 1, "PC00040": null, "ACETYLSERINE": null} "CysB-O-acetyl-L-serine DNA-binding transcriptional dual regulator" @@ -23,7 +25,7 @@ "CPLX0-7606_RXN" {"CPLX0-7606": 1, "PD04099": null, "GLYOX": null} "IclR-glyoxylate" "CPLX0-7618_RXN" {"CPLX0-7618": 1, "G7137-MONOMER": null, "NI+2": null} "RcnR-Ni2+" "CPLX0-7619_RXN" {"CPLX0-7619": 1, "G7137-MONOMER": null, "CO+2": null} "RcnR-Co2+" -"CPLX0-7639_RXN" {"CPLX0-7639": 1, "FE+2": -2, "PD00260": -2} "Fur-a [2Fe-2S] iron-sulfur cluster DNA-binding transcriptional dual regulator" +"CPLX0-7639_RXN" {"CPLX0-7639": 1, "FE+2": -2, "PD00260": -2} "[2Fe-2S] cluster DNA-binding transcriptional dual regulator" "CPLX0-7650_RXN" {"CPLX0-7650": 1, "PD00444": null, "FUCULOSE-1P": null} "FucR-L-fuculose-1-phosphate DNA-binding transcriptional activator" "CPLX0-7651_RXN" {"CPLX0-7651": 1, "PD01352": null, "URACIL": null} "RutR-uracil" "CPLX0-7670_RXN" {"CPLX0-7670": 1, "CPLX0-7669": null, "LYS": null} "ArgP-L-lysine" @@ -48,7 +50,7 @@ "CPLX0-7750_RXN" {"CPLX0-7750": 1, "G6799-MONOMER": null, "CPD-10551": null} "LsrR-(2S)-2-hydroxy-3,4-dioxopentyl phosphate" "CPLX0-7751_RXN" {"CPLX0-7751": 1, "EG11212-MONOMER": null, "NITRIC-OXIDE": null} "NsrR-nitric oxide" "CPLX0-7752_RXN" {"CPLX0-7752": 1, "CPLX0-7759": null, "HOMO-CYS": null} "MetR-L-homocysteine" -"CPLX0-7761_RXN" {"CPLX0-7761": 1, "CPD-7": -2, "ACONITATEDEHYDRB-MONOMER": -2} "bifunctional aconitate hydratase B and 2-methylisocitrate dehydratase" +"CPLX0-7761_RXN" {"CPLX0-7761": 1, "CPD-7": -2, "ACONITATEDEHYDRB-MONOMER": -2} "bifunctional aconitate hydratase B/2-methylisocitrate dehydratase" "CPLX0-8026_RXN" {"CPLX0-8026": 1, "5-METHYLTHIOADENOSINE": null, "PD04032": null} "MetJ-MTA" "CPLX0-8027_RXN" {"CPLX0-8027": 1, "ADENINE": null, "PD04032": null} "MetJ-adenine" "CPLX0-8048_RXN" {"CPLX0-8048": 1, "EG12694-MONOMER": null, "TARTRATE": null} "Dan-L-tartrate DNA-binding transcriptional activator" @@ -60,7 +62,7 @@ "CPLX0-8060_RXN" {"CPLX0-8060": 1, "PD00339": null, "GLY": null} "GcvA-glycine" "CPLX0-8061_RXN" {"CPLX0-8061": 1, "EG11320-MONOMER": null, "ZN+2": null} "NrdR-Zn2+ DNA-binding transcriptional repressor" "CPLX0-8062_RXN" {"CPLX0-8062": 1, "CPLX0-7666": null, "CARNITINE": null} "CaiF-L-carnitine DNA-binding Transcriptional Activator" -"CPLX0-8069_RXN" {"CPLX0-8069": 1, "G7594-MONOMER": null, "NI+2": null} "NfeR-Ni2+" +"CPLX0-8069_RXN" {"CPLX0-8069": 1, "G7594-MONOMER": null, "NI+2": null} "NfeR-Ni(2+)" "CPLX0-8070_RXN" {"CPLX0-8070": 1, "EG10230-MONOMER": null, "GUANOSINE-5DP-3DP": null} "DksA-ppGpp" "CPLX0-8071_R--ALLANTOIN_RXN" {"CPLX0-8071": 1, "R--ALLANTOIN": null, "G6276-MONOMER": null} "AllR-allantoin" "CPLX0-8071_S-ALLANTOIN_RXN" {"CPLX0-8071": 1, "S-ALLANTOIN": null, "G6276-MONOMER": null} "AllR-allantoin" diff --git a/reconstruction/ecoli/flat/genes.tsv b/reconstruction/ecoli/flat/genes.tsv index e0334fe5a..6c3cfd2db 100644 --- a/reconstruction/ecoli/flat/genes.tsv +++ b/reconstruction/ecoli/flat/genes.tsv @@ -1,7 +1,7 @@ # Organism: Escherichia coli K-12 substr. MG1655 # Database: EcoCyc -# Version: 28.1 -# Date and time generated: March 7, 2024, 13:55:45 +# Version: 28.5 +# Date and time generated: July 19, 2024, 9:40:40 "id" "symbol" "synonyms" "left_end_pos" "right_end_pos" "direction" "rna_ids" "EG10001" "alr" ["alr", "alr5", "b4053", "ECK4045"] 4265782 4266861 "+" ["EG10001_RNA"] "EG10002" "modB" ["modB", "chlJ", "tslJ", "b0764", "ECK0753"] 795862 796551 "+" ["EG10002_RNA"] @@ -1257,7 +1257,7 @@ "EG11280" "leuL" ["leuL", "leuLP", "leulL", "leulLP", "leuIP", "b0075", "ECK0077"] 83622 83708 "-" ["EG11280_RNA"] "EG11281" "mutL" ["mutL", "b4170", "ECK4166"] 4397412 4399259 "+" ["EG11281_RNA"] "EG11282" "hyfB" ["hyfB", "yffF", "b2482", "ECK2478"] 2601818 2603836 "+" ["EG11282_RNA"] -"EG11283" "phnE" ["phnE", "ECK4097", "b4103", "b4104", "b4583", "ECK4096"] 4322443 4323281 "-" ["EG11283_RNA"] +"EG11283" "phnE1" ["phnE1", "ECK4097", "b4103", "b4104", "b4583", "ECK4096"] 4322443 4323281 "-" ["EG11283_RNA"] "EG11284" "fabZ" ["fabZ", "sfhC21", "sabA1", "sefA", "yaeA", "b0180", "ECK0179"] 202101 202556 "+" ["EG11284_RNA"] "EG11285" "glrR" ["glrR", "yfhA", "qseF", "b2554", "ECK2551"] 2687469 2688803 "-" ["EG11285_RNA"] "EG11286" "argE" ["argE", "b3957", "ECK3948"] 4153696 4154847 "-" ["EG11286_RNA"] @@ -2603,7 +2603,7 @@ "G0-10461" "ypdJ" ["ypdJ", "b4545", "ECK2358"] 2476094 2476234 "+" ["G0-10461_RNA"] "G0-10462" "ypeB" ["ypeB", "b4546", "ECK2405"] 2527941 2528159 "-" ["G0-10462_RNA"] "G0-10463" "ypfN" ["ypfN", "b4547", "ECK2468"] 2592762 2592962 "+" ["G0-10463_RNA"] -"G0-10464" "ypjJ" ["ypjJ", "b4548", "ECK2641"] 2776877 2777077 "+" ["G0-10464_RNA"] +"G0-10464" "ypjJ" ["ypjJ", "lfgC", "b4548", "ECK2641"] 2776877 2777077 "+" ["G0-10464_RNA"] "G0-10465" "arfA" ["arfA", "yhdL", "b4550", "ECK3278"] 3438431 3438649 "-" ["G0-10465_RNA"] "G0-10466" "yheV" ["yheV", "b4551", "ECK3337"] 3478592 3478792 "-" ["G0-10466_RNA"] "G0-10467" "ysaB" ["ysaB", "b4553", "ECK3549"] 3725413 3725712 "-" ["G0-10467_RNA"] @@ -2894,12 +2894,11 @@ "G0-17119" "asflhD" ["asflhD", "b4839", "ECK4696"] 1978176 1978395 "+" ["RNA0-435"] "G0-17120" "stfZ" ["stfZ", "b4840", "ECK4697"] 104948 105499 "-" ["RNA0-436"] "G0-17122" "ascrp" ["ascrp", "b4841", "ECK4698"] 3485953 3486231 "-" ["RNA0-437"] -"G0-17123" "asompR" ["asompR", "b4842", "ECK4699"] 3536438 3536775 "+" ["G0-17123_RNA"] +"G0-17123" "asompR" ["asompR", "b4842", "ECK4699"] 3536438 3536775 "+" ["RNA0-438"] "G0-17124" "asphoP" ["asphoP", "b4843", "ECK4700"] 1190165 1190508 "+" ["RNA0-439"] "G0-17125" "ameF" ["ameF", "b4844", "ECK4701"] 2911051 2911450 "+" ["RNA0-440"] "G0-17126" "xtpA" ["xtpA", "b4845", "ECK4702"] 345252 345434 "+" ["G0-17126_RNA"] "G0-17130" "yrdG" ["yrdG", "asarfA", "b4846", "ECK4703"] 3438431 3438484 "-" ["RNA0-441"] -"G0-17132" null [] null null null ["G0-17132_RNA"] "G0-41" "ecnA" ["ecnA", "b4410", "ECK4142"] 4376317 4376442 "+" ["G0-41_RNA"] "G0-8601" "glcF" ["glcF", "gox", "yghL", "b2978", "b4467", "ECK2972"] 3124236 3125459 "-" ["G0-8601_RNA"] "G0-8785" "csrB" ["csrB", "b4408", "ECK2787"] 2924156 2924524 "-" ["CSRB-RNA"] @@ -4236,10 +4235,10 @@ "G7373" "yfjU" ["yfjU", "b2638", "ECK2634"] 2771840 2772154 "-" ["G7373_RNA"] "G7376" "yfjV" ["yfjV", "ypjM", "ypjL", "ECK2637", "ECK2636", "b2640", "b2639", "b2641", "ECK2635"] 2772167 2773182 "-" ["G7376_RNA"] "G7377" "yfjW" ["yfjW", "b2642", "ECK2638"] 2773318 2775021 "+" ["G7377_RNA"] -"G7378" "yfjX" ["yfjX", "b2643", "ECK2639"] 2775919 2776377 "+" ["G7378_RNA"] -"G7379" "yfjY" ["yfjY", "b2644", "ECK2640"] 2776386 2776868 "+" ["G7379_RNA"] -"G7380" "yfjZ" ["yfjZ", "b2645", "ECK2642"] 2777115 2777432 "+" ["G7380_RNA"] -"G7381" "ypjF" ["ypjF", "b2646", "ECK2643"] 2777453 2777782 "+" ["G7381_RNA"] +"G7378" "lfgA" ["lfgA", "yfjX", "b2643", "ECK2639"] 2775919 2776377 "+" ["G7378_RNA"] +"G7379" "lfgB" ["lfgB", "yfjY", "b2644", "ECK2640"] 2776386 2776868 "+" ["G7379_RNA"] +"G7380" "yfjZ" ["yfjZ", "lfgD", "b2645", "ECK2642"] 2777115 2777432 "+" ["G7380_RNA"] +"G7381" "ypjF" ["ypjF", "lfgE", "b2646", "ECK2643"] 2777453 2777782 "+" ["G7381_RNA"] "G7382" "ypjA" ["ypjA", "b2647", "ECK2644"] 2778146 2782726 "-" ["G7382_RNA"] "G7383" "pinH" ["pinH", "ypjG", "b2648", "ECK2645"] 2783065 2783304 "-" ["G7383_RNA"] "G7384" "ypjB" ["ypjB", "b2649", "ECK2646"] 2783638 2784429 "-" ["G7384_RNA"] @@ -4384,7 +4383,7 @@ "G7535" "yghD" ["yghD", "ecfC", "b2968", "ECK2963"] 3110590 3111126 "-" ["G7535_RNA"] "G7536" "yghE" ["yghE", "ecfB", "b2969", "ECK2964"] 3111128 3111988 "-" ["G7536_RNA"] "G7537" "yghF" ["yghF", "ecfA", "b2970", "ECK2965"] 3112054 3113049 "-" ["G7537_RNA"] -"G7538" "yghG" ["yghG", "b2971", "ECK2966"] 3113067 3113477 "-" ["G7538_RNA"] +"G7538" "yghG" ["yghG", "gspSβ", "b2971", "ECK2966"] 3113067 3113477 "-" ["G7538_RNA"] "G7539" "pppA" ["pppA", "yghH", "b2972", "ECK2967"] 3113543 3114352 "-" ["G7539_RNA"] "G7541" "yghJ" ["yghJ", "b2974", "b2973", "sslE", "b4466", "ECK2968"] 3114550 3119112 "-" ["G7541_RNA"] "G7542" "glcA" ["glcA", "yghK", "b2975", "ECK2969"] 3119597 3121279 "-" ["G7542_RNA"] @@ -4512,7 +4511,7 @@ "G7678" "nanR" ["nanR", "yhcK", "b3226", "ECK3215"] 3373698 3374489 "-" ["G7678_RNA"] "G7679" "dcuD" ["dcuD", "yhcL", "b3227", "ECK3216"] 3374869 3376236 "+" ["G7679_RNA"] "G7680" "zapE" ["zapE", "yhcM", "b3232", "ECK3221"] 3378870 3379997 "-" ["G7680_RNA"] -"G7681" "zapG" ["zapG", "yhcB", "lapD", "b3233", "ECK3222"] 3380191 3380589 "+" ["G7681_RNA"] +"G7681" "yhcB" ["yhcB", "lapD", "zapG", "b3233", "ECK3222"] 3380191 3380589 "+" ["G7681_RNA"] "G7682" "degQ" ["degQ", "hhoA", "b3234", "ECK3223"] 3380743 3382110 "+" ["G7682_RNA"] "G7683" "yhcN" ["yhcN", "b3238", "ECK3227"] 3385538 3385801 "+" ["G7683_RNA"] "G7684" "yhcO" ["yhcO", "b3239", "ECK3228"] 3385857 3386129 "-" ["G7684_RNA"] diff --git a/reconstruction/ecoli/flat/metabolic_reactions.tsv b/reconstruction/ecoli/flat/metabolic_reactions.tsv index ca2f20f77..9f6af4d58 100644 --- a/reconstruction/ecoli/flat/metabolic_reactions.tsv +++ b/reconstruction/ecoli/flat/metabolic_reactions.tsv @@ -1,7 +1,7 @@ # Organism: Escherichia coli K-12 substr. MG1655 # Database: EcoCyc -# Version: 28.1 -# Date and time generated: March 7, 2024, 13:56:09 +# Version: 28.5 +# Date and time generated: July 19, 2024, 9:41:02 "id" "stoichiometry" "direction" "catalyzed_by" "1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN" {"ACYL-SN-GLYCEROL-3P[CCO-CYTOSOL]": -1, "ACYL-ACP[CCO-CYTOSOL]": -1, "L-PHOSPHATIDATE[CCO-CYTOSOL]": 1, "ACP[CCO-CYTOSOL]": 1} "L2R" ["1-ACYLGLYCEROL-3-P-ACYLTRANSFER-MONOMER"] "1.1.1.127-RXN" {"2-DEHYDRO-3-DEOXY-D-GLUCONATE[CCO-CYTOSOL]": -1, "NAD[CCO-CYTOSOL]": -1, "CPD-343[CCO-CYTOSOL]": 1, "NADH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "BOTH" ["KDUD-MONOMER"] @@ -19,17 +19,17 @@ "1.5.1.20-RXN-5-METHYL-THF/NADP//METHYLENE-THF/NADPH/PROTON.46." {"5-METHYL-THF[CCO-CYTOSOL]": -1, "NADP[CCO-CYTOSOL]": -1, "METHYLENE-THF[CCO-CYTOSOL]": 1, "NADPH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "BOTH" [] "1.5.1.20-RXN-CPD-1302/NAD//CPD-12996/NADH/PROTON.36." {"CPD-1302[CCO-CYTOSOL]": -1, "NAD[CCO-CYTOSOL]": -1, "CPD-12996[CCO-CYTOSOL]": 1, "NADH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "BOTH" [] "1.5.1.20-RXN-CPD-1302/NADP//CPD-12996/NADPH/PROTON.38." {"CPD-1302[CCO-CYTOSOL]": -1, "NADP[CCO-CYTOSOL]": -1, "CPD-12996[CCO-CYTOSOL]": 1, "NADPH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "BOTH" [] -"1.7.2.2-RXN-a-reduced-NrfB-protein/NITRITE/PROTON//AMMONIUM/an-oxidized-NrfB-protein/WATER.79." {"a-reduced-NrfB-protein[CCO-PERI-BAC]": -6, "NITRITE[CCO-PERI-BAC]": -1, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "an-oxidized-NrfB-protein[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] -"1.7.2.2-RXN-a-reduced-TorC-protein/NITRITE/PROTON//AMMONIUM/an-oxidized-TorC-protein/WATER.79." {"a-reduced-TorC-protein[CCO-PERI-BAC]": -6, "NITRITE[CCO-PERI-BAC]": -1, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "an-oxidized-TorC-protein[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] -"1.7.2.2-RXN-A-REDUCED-TORY-PROTEIN/NITRITE/PROTON//AMMONIUM/an-oxidized-TorY-protein/WATER.79." {"A-REDUCED-TORY-PROTEIN[CCO-PERI-BAC]": -6, "NITRITE[CCO-PERI-BAC]": -1, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "an-oxidized-TorY-protein[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] -"1.7.2.2-RXN-Cytochromes-C-Reduced/NITRITE/PROTON//AMMONIUM/Cytochromes-C-Oxidized/WATER.76." {"Cytochromes-C-Reduced[CCO-PERI-BAC]": -6, "NITRITE[CCO-PERI-BAC]": -1, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "Cytochromes-C-Oxidized[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] -"1.7.2.2-RXN-Cytochromes-C550-Red/NITRITE/PROTON//AMMONIUM/Cytochromes-C550-Ox/WATER.72." {"Cytochromes-C550-Red[CCO-PERI-BAC]": -6, "NITRITE[CCO-PERI-BAC]": -1, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "Cytochromes-C550-Ox[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] -"1.7.2.2-RXN-Cytochromes-C552-Red/NITRITE/PROTON//AMMONIUM/Cytochromes-C552-Ox/WATER.72." {"Cytochromes-C552-Red[CCO-PERI-BAC]": -6, "NITRITE[CCO-PERI-BAC]": -1, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "Cytochromes-C552-Ox[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] -"1.7.2.2-RXN-Cytochromes-C554-Red/NITRITE/PROTON//AMMONIUM/Cytochromes-C554-Ox/WATER.72." {"Cytochromes-C554-Red[CCO-PERI-BAC]": -6, "NITRITE[CCO-PERI-BAC]": -1, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "Cytochromes-C554-Ox[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] -"1.7.2.2-RXN-Cytochromes-CL-Red/NITRITE/PROTON//AMMONIUM/Cytochromes-CL-Ox/WATER.68." {"Cytochromes-CL-Red[CCO-PERI-BAC]": -6, "NITRITE[CCO-PERI-BAC]": -1, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "Cytochromes-CL-Ox[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] -"1.7.2.2-RXN-Reduced-cytochromes-c2/NITRITE/PROTON//AMMONIUM/Oxidized-cytochromes-c2/WATER.78." {"Reduced-cytochromes-c2[CCO-PERI-BAC]": -6, "NITRITE[CCO-PERI-BAC]": -1, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "Oxidized-cytochromes-c2[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] -"1.7.2.2-RXN-Reduced-cytochromes-c553/NITRITE/PROTON//AMMONIUM/Oxidized-cytochromes-c553/WATER.82." {"Reduced-cytochromes-c553[CCO-PERI-BAC]": -6, "NITRITE[CCO-PERI-BAC]": -1, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "Oxidized-cytochromes-c553[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] -"1.7.2.2-RXN-Reduced-NapC-proteins/NITRITE/PROTON//AMMONIUM/Oxidized-NapC-proteins/WATER.76." {"Reduced-NapC-proteins[CCO-PERI-BAC]": -6, "NITRITE[CCO-PERI-BAC]": -1, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "Oxidized-NapC-proteins[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] +"1.7.2.2-RXN-NITRITE/a-reduced-NrfB-protein/PROTON//AMMONIUM/an-oxidized-NrfB-protein/WATER.79." {"NITRITE[CCO-PERI-BAC]": -1, "a-reduced-NrfB-protein[CCO-PERI-BAC]": -6, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "an-oxidized-NrfB-protein[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] +"1.7.2.2-RXN-NITRITE/a-reduced-TorC-protein/PROTON//AMMONIUM/an-oxidized-TorC-protein/WATER.79." {"NITRITE[CCO-PERI-BAC]": -1, "a-reduced-TorC-protein[CCO-PERI-BAC]": -6, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "an-oxidized-TorC-protein[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] +"1.7.2.2-RXN-NITRITE/A-REDUCED-TORY-PROTEIN/PROTON//AMMONIUM/an-oxidized-TorY-protein/WATER.79." {"NITRITE[CCO-PERI-BAC]": -1, "A-REDUCED-TORY-PROTEIN[CCO-PERI-BAC]": -6, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "an-oxidized-TorY-protein[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] +"1.7.2.2-RXN-NITRITE/Cytochromes-C-Reduced/PROTON//AMMONIUM/Cytochromes-C-Oxidized/WATER.76." {"NITRITE[CCO-PERI-BAC]": -1, "Cytochromes-C-Reduced[CCO-PERI-BAC]": -6, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "Cytochromes-C-Oxidized[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] +"1.7.2.2-RXN-NITRITE/Cytochromes-C550-Red/PROTON//AMMONIUM/Cytochromes-C550-Ox/WATER.72." {"NITRITE[CCO-PERI-BAC]": -1, "Cytochromes-C550-Red[CCO-PERI-BAC]": -6, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "Cytochromes-C550-Ox[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] +"1.7.2.2-RXN-NITRITE/Cytochromes-C552-Red/PROTON//AMMONIUM/Cytochromes-C552-Ox/WATER.72." {"NITRITE[CCO-PERI-BAC]": -1, "Cytochromes-C552-Red[CCO-PERI-BAC]": -6, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "Cytochromes-C552-Ox[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] +"1.7.2.2-RXN-NITRITE/Cytochromes-C554-Red/PROTON//AMMONIUM/Cytochromes-C554-Ox/WATER.72." {"NITRITE[CCO-PERI-BAC]": -1, "Cytochromes-C554-Red[CCO-PERI-BAC]": -6, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "Cytochromes-C554-Ox[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] +"1.7.2.2-RXN-NITRITE/Cytochromes-CL-Red/PROTON//AMMONIUM/Cytochromes-CL-Ox/WATER.68." {"NITRITE[CCO-PERI-BAC]": -1, "Cytochromes-CL-Red[CCO-PERI-BAC]": -6, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "Cytochromes-CL-Ox[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] +"1.7.2.2-RXN-NITRITE/Reduced-cytochromes-c2/PROTON//AMMONIUM/Oxidized-cytochromes-c2/WATER.78." {"NITRITE[CCO-PERI-BAC]": -1, "Reduced-cytochromes-c2[CCO-PERI-BAC]": -6, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "Oxidized-cytochromes-c2[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] +"1.7.2.2-RXN-NITRITE/Reduced-cytochromes-c553/PROTON//AMMONIUM/Oxidized-cytochromes-c553/WATER.82." {"NITRITE[CCO-PERI-BAC]": -1, "Reduced-cytochromes-c553[CCO-PERI-BAC]": -6, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "Oxidized-cytochromes-c553[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] +"1.7.2.2-RXN-NITRITE/Reduced-NapC-proteins/PROTON//AMMONIUM/Oxidized-NapC-proteins/WATER.76." {"NITRITE[CCO-PERI-BAC]": -1, "Reduced-NapC-proteins[CCO-PERI-BAC]": -6, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "Oxidized-NapC-proteins[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] "1.7.2.3-RXN" {"TRIMETHYLAMINE[CCO-PERI-BAC]": -1, "Cytochromes-C-Oxidized[CCO-PERI-BAC]": -2, "WATER[CCO-PERI-BAC]": -1, "TRIMETHYLAMINE-N-O[CCO-PERI-BAC]": 1, "Cytochromes-C-Reduced[CCO-PERI-BAC]": 2, "PROTON[CCO-PERI-BAC]": 3} "R2L" [] "1.7.2.3-RXN-TRIMETHYLAMINE/an-oxidized-NrfB-protein/WATER//TRIMETHYLAMINE-N-O/a-reduced-NrfB-protein/PROTON.96." {"TRIMETHYLAMINE[CCO-PERI-BAC]": -1, "an-oxidized-NrfB-protein[CCO-PERI-BAC]": -2, "WATER[CCO-PERI-BAC]": -1, "TRIMETHYLAMINE-N-O[CCO-PERI-BAC]": 1, "a-reduced-NrfB-protein[CCO-PERI-BAC]": 2, "PROTON[CCO-PERI-BAC]": 3} "R2L" [] "1.7.2.3-RXN-TRIMETHYLAMINE/Cytochromes-C550-Ox/WATER//TRIMETHYLAMINE-N-O/Cytochromes-C550-Red/PROTON.89." {"TRIMETHYLAMINE[CCO-PERI-BAC]": -1, "Cytochromes-C550-Ox[CCO-PERI-BAC]": -2, "WATER[CCO-PERI-BAC]": -1, "TRIMETHYLAMINE-N-O[CCO-PERI-BAC]": 1, "Cytochromes-C550-Red[CCO-PERI-BAC]": 2, "PROTON[CCO-PERI-BAC]": 3} "R2L" [] @@ -82,7 +82,7 @@ "2.3.1.118-RXN" {"N-Hydroxy-Arylamines[CCO-CYTOSOL]": -1, "ACETYL-COA[CCO-CYTOSOL]": -1, "N-Acetoxy-Arylamines[CCO-CYTOSOL]": 1, "CO-A[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-236"] "2.3.1.128-RXN" {"ACETYL-COA[CCO-CYTOSOL]": -1, "S18-N-terminal-L-alanine[CCO-CYTOSOL]": -1, "Acetylated-S18-N-terminal-L-alanine[CCO-CYTOSOL]": 1, "CO-A[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["EG10850-MONOMER"] "2.3.1.157-RXN" {"GLUCOSAMINE-1P[CCO-CYTOSOL]": -1, "ACETYL-COA[CCO-CYTOSOL]": -1, "N-ACETYL-D-GLUCOSAMINE-1-P[CCO-CYTOSOL]": 1, "CO-A[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["NAG1P-URIDYLTRANS-CPLX"] -"2.3.1.179-RXN" {"Palmitoleoyl-ACPs[CCO-CYTOSOL]": -1, "MALONYL-ACP[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "3-oxo-cis-vaccenoyl-ACPs[CCO-CYTOSOL]": 1, "CARBON-DIOXIDE[CCO-CYTOSOL]": 1, "ACP[CCO-CYTOSOL]": 1} "L2R" ["3-OXOACYL-ACP-SYNTHII-CPLX"] +"2.3.1.179-RXN" {"Palmitoleoyl-ACPs[CCO-CYTOSOL]": -1, "MALONYL-ACP[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "3-oxo-cis-vaccenoyl-ACPs[CCO-CYTOSOL]": 1, "CARBON-DIOXIDE[CCO-CYTOSOL]": 1, "ACP[CCO-CYTOSOL]": 1} "L2R" ["FABB-CPLX", "3-OXOACYL-ACP-SYNTHII-CPLX"] "2.3.1.180-RXN" {"ACETYL-COA[CCO-CYTOSOL]": -1, "MALONYL-ACP[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "Acetoacetyl-ACPs[CCO-CYTOSOL]": 1, "CO-A[CCO-CYTOSOL]": 1, "CARBON-DIOXIDE[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-252"] "2.3.1.41-RXN" {"Long-Chain-Acyl-ACPs[CCO-CYTOSOL]": -1, "MALONYL-ACP[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "Long-Chain-3-oxo-ACPs[CCO-CYTOSOL]": 1, "CARBON-DIOXIDE[CCO-CYTOSOL]": 1, "ACP[CCO-CYTOSOL]": 1} "L2R" ["FABB-CPLX"] "2.3.1.49-RXN" {"HOLO-CITRATE-LYASE[CCO-CYTOSOL]": -1, "S-ACETYLPHOSPHOPANTETHEINE[CCO-CYTOSOL]": -1, "CITRATE-LYASE[CCO-CYTOSOL]": 1, "PANTETHEINE-P[CCO-CYTOSOL]": 1} "L2R" [] @@ -854,7 +854,7 @@ "ENTF-RXN" {"SER[CCO-CYTOSOL]": -1, "ATP[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "SERYL-AMP[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 1} "L2R" ["ALAS-CPLX", "THRS-CPLX", "SERS-CPLX", "ENTMULTI-CPLX", "ENTF-PANT"] "ENTG-RXN" {"DHB-Seryl-EntF[CCO-CYTOSOL]": -3, "ENTEROBACTIN[CCO-CYTOSOL]": 1, "Holo-EntF[CCO-CYTOSOL]": 3} "L2R" ["ENTF-PANT", "ENTMULTI-CPLX"] "ENTMULTI-RXN" {"ATP[CCO-CYTOSOL]": -6, "SER[CCO-CYTOSOL]": -3, "2-3-DIHYDROXYBENZOATE[CCO-CYTOSOL]": -3, "AMP[CCO-CYTOSOL]": 6, "ENTEROBACTIN[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 6, "PROTON[CCO-CYTOSOL]": 3} "L2R" ["ENTMULTI-CPLX"] -"ENVZ-RXN" {"ENVZ-CPLX[CCO-PM-BAC-NEG]": -1, "ATP[CCO-CYTOSOL]": -1, "ADP[CCO-CYTOSOL]": 1, "PHOSPHO-ENVZ[CCO-PM-BAC-NEG]": 1} "L2R" [] +"ENVZ-RXN" {"ENVZ-CPLX[CCI-PM-BAC-NEG-GN]": -1, "ATP[CCO-CYTOSOL]": -1, "ADP[CCO-CYTOSOL]": 1, "PHOSPHO-ENVZ[CCI-PM-BAC-NEG-GN]": 1} "L2R" [] "ERYTH4PDEHYDROG-RXN" {"ERYTHROSE-4P[CCO-CYTOSOL]": -1, "NAD[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "ERYTHRONATE-4P[CCO-CYTOSOL]": 1, "NADH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" ["ERYTH4PDEHYDROG-CPLX"] "ERYTHRON4PDEHYDROG-RXN" {"ERYTHRONATE-4P[CCO-CYTOSOL]": -1, "NAD[CCO-CYTOSOL]": -1, "3OH-4P-OH-ALPHA-KETOBUTYRATE[CCO-CYTOSOL]": 1, "NADH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8212"] "ETHAMLY-RXN" {"ETHANOL-AMINE[CCO-CYTOSOL]": -1, "AMMONIUM[CCO-CYTOSOL]": 1, "ACETALD[CCO-CYTOSOL]": 1} "L2R" ["ETHAMLY-CPLX"] @@ -1177,7 +1177,7 @@ "NICONUCADENYLYLTRAN-RXN" {"ATP[CCO-CYTOSOL]": -1, "NICOTINATE_NUCLEOTIDE[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "DEAMIDO-NAD[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 1} "L2R" ["NICONUCADENYLYLTRAN-MONOMER"] "NICOTINAMID-RXN" {"NIACINAMIDE[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "AMMONIUM[CCO-CYTOSOL]": 1, "NIACINE[CCO-CYTOSOL]": 1} "L2R" ["NICOTINAMID-MONOMER"] "NICOTINATEPRIBOSYLTRANS-RXN" {"NIACINE[CCO-CYTOSOL]": -1, "PRPP[CCO-CYTOSOL]": -1, "ATP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "NICOTINATE_NUCLEOTIDE[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1} "L2R" ["NICOTINATEPRIBOSYLTRANS-MONOMER"] -"NITRATE-REDUCTASE-CYTOCHROME-RXN-Reduced-NapC-proteins/NITRATE/PROTON//Oxidized-NapC-proteins/NITRITE/WATER.75." {"Reduced-NapC-proteins[CCO-PERI-BAC]": -2, "NITRATE[CCO-PERI-BAC]": -1, "PROTON[CCO-PERI-BAC]": -2, "Oxidized-NapC-proteins[CCO-PERI-BAC]": 2, "NITRITE[CCO-PERI-BAC]": 1, "WATER[CCO-PERI-BAC]": 1} "L2R" [] +"NITRATE-REDUCTASE-CYTOCHROME-RXN-NITRATE/Reduced-NapC-proteins/PROTON//NITRITE/Oxidized-NapC-proteins/WATER.75." {"NITRATE[CCO-PERI-BAC]": -1, "Reduced-NapC-proteins[CCO-PERI-BAC]": -2, "PROTON[CCO-PERI-BAC]": -2, "NITRITE[CCO-PERI-BAC]": 1, "Oxidized-NapC-proteins[CCO-PERI-BAC]": 2, "WATER[CCO-PERI-BAC]": 1} "L2R" [] "NMNAMIDOHYDRO-RXN" {"NICOTINAMIDE_NUCLEOTIDE[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "AMMONIUM[CCO-CYTOSOL]": 1, "NICOTINATE_NUCLEOTIDE[CCO-CYTOSOL]": 1} "L2R" ["CPLXECOLI-7943"] "NMNNUCLEOSID-RXN" {"NICOTINAMIDE_NUCLEOTIDE[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD-15317[CCO-CYTOSOL]": 1, "NIACINAMIDE[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["NMNNUCLEOSID-MONOMER"] "NMNNUCLEOSID-RXN-NICOTINAMIDE_NUCLEOTIDE/WATER//CPD-15318/NIACINAMIDE/PROTON.60." {"NICOTINAMIDE_NUCLEOTIDE[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD-15318[CCO-CYTOSOL]": 1, "NIACINAMIDE[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["NMNNUCLEOSID-MONOMER"] @@ -1420,11 +1420,11 @@ "RXN-10462" {"GLYCEROL-3P[CCO-CYTOSOL]": -1, "ACYL-ACP[CCO-CYTOSOL]": -1, "ACYL-SN-GLYCEROL-3P[CCO-CYTOSOL]": 1, "ACP[CCO-CYTOSOL]": 1} "L2R" ["GLYCEROL-3-P-ACYLTRANSFER-MONOMER"] "RXN-10654" {"Cis-Delta5-dodecenoyl-ACPs[CCO-CYTOSOL]": -1, "MALONYL-ACP[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "3-oxo-cis-D7-tetradecenoyl-ACPs[CCO-CYTOSOL]": 1, "ACP[CCO-CYTOSOL]": 1, "CARBON-DIOXIDE[CCO-CYTOSOL]": 1} "L2R" ["FABB-CPLX"] "RXN-10655" {"3-hydroxy-cis-D7-tetraecenoyl-ACPs[CCO-CYTOSOL]": -1, "NADP[CCO-CYTOSOL]": -1, "3-oxo-cis-D7-tetradecenoyl-ACPs[CCO-CYTOSOL]": 1, "NADPH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "R2L" ["CPLX0-8005"] -"RXN-10656" {"3-hydroxy-cis-D7-tetraecenoyl-ACPs[CCO-CYTOSOL]": -1, "Trans-D2-cis-D7-tetradecenoyl-ACPs[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["FABZ-CPLX"] +"RXN-10656" {"3-hydroxy-cis-D7-tetraecenoyl-ACPs[CCO-CYTOSOL]": -1, "Trans-D2-cis-D7-tetradecenoyl-ACPs[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["FABA-CPLX", "FABZ-CPLX"] "RXN-10657" {"Cis-Delta7-tetradecenoyl-ACPs[CCO-CYTOSOL]": -1, "NAD[CCO-CYTOSOL]": -1, "Trans-D2-cis-D7-tetradecenoyl-ACPs[CCO-CYTOSOL]": 1, "NADH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "R2L" ["CPLX0-8006"] -"RXN-10658" {"Cis-Delta7-tetradecenoyl-ACPs[CCO-CYTOSOL]": -1, "MALONYL-ACP[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "3-oxo-cis-D9-hexadecenoyl-ACPs[CCO-CYTOSOL]": 1, "ACP[CCO-CYTOSOL]": 1, "CARBON-DIOXIDE[CCO-CYTOSOL]": 1} "L2R" ["FABB-CPLX"] +"RXN-10658" {"Cis-Delta7-tetradecenoyl-ACPs[CCO-CYTOSOL]": -1, "MALONYL-ACP[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "3-oxo-cis-D9-hexadecenoyl-ACPs[CCO-CYTOSOL]": 1, "ACP[CCO-CYTOSOL]": 1, "CARBON-DIOXIDE[CCO-CYTOSOL]": 1} "L2R" ["FABB-CPLX", "3-OXOACYL-ACP-SYNTHII-CPLX"] "RXN-10659" {"3-hydroxy-cis-D9-hexaecenoyl-ACPs[CCO-CYTOSOL]": -1, "NADP[CCO-CYTOSOL]": -1, "3-oxo-cis-D9-hexadecenoyl-ACPs[CCO-CYTOSOL]": 1, "NADPH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "R2L" ["CPLX0-8005"] -"RXN-10660" {"3-hydroxy-cis-D9-hexaecenoyl-ACPs[CCO-CYTOSOL]": -1, "Trans-D3-cis-D9-hexadecenoyl-ACPs[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["FABZ-CPLX"] +"RXN-10660" {"3-hydroxy-cis-D9-hexaecenoyl-ACPs[CCO-CYTOSOL]": -1, "Trans-D3-cis-D9-hexadecenoyl-ACPs[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["FABA-CPLX", "FABZ-CPLX"] "RXN-10661" {"Palmitoleoyl-ACPs[CCO-CYTOSOL]": -1, "NAD[CCO-CYTOSOL]": -1, "Trans-D3-cis-D9-hexadecenoyl-ACPs[CCO-CYTOSOL]": 1, "NADH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "R2L" ["CPLX0-8006"] "RXN-10745-1-NADH/OXYGEN-MOLECULE//HYDROGEN-PEROXIDE/SUPER-OXIDE/NAD.56." {"NADH[CCO-CYTOSOL]": -2, "OXYGEN-MOLECULE[CCO-CYTOSOL]": -3, "HYDROGEN-PEROXIDE[CCO-CYTOSOL]": 1, "SUPER-OXIDE[CCO-CYTOSOL]": 2, "NAD[CCO-CYTOSOL]": 2} "L2R" [] "RXN-10745-1-NADPH/OXYGEN-MOLECULE//HYDROGEN-PEROXIDE/SUPER-OXIDE/NADP.58." {"NADPH[CCO-CYTOSOL]": -2, "OXYGEN-MOLECULE[CCO-CYTOSOL]": -3, "HYDROGEN-PEROXIDE[CCO-CYTOSOL]": 1, "SUPER-OXIDE[CCO-CYTOSOL]": 2, "NADP[CCO-CYTOSOL]": 2} "L2R" [] @@ -1561,17 +1561,17 @@ "RXN-12864" {"SELENITE[CCO-CYTOSOL]": -1, "GLUTATHIONE[CCO-CYTOSOL]": -4, "PROTON[CCO-CYTOSOL]": -2, "CPD-13908[CCO-CYTOSOL]": 1, "OXIDIZED-GLUTATHIONE[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 3} "L2R" [] "RXN-12869" {"L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": -2, "OXYGEN-MOLECULE[CCO-CYTOSOL]": -1, "CPD-13914[CCO-CYTOSOL]": 2} "L2R" [] "RXN-12872" {"CPD-13914[CCO-CYTOSOL]": -1, "CPD-13910[CCO-CYTOSOL]": 1} "L2R" [] -"RXN-12876" {"Cytochromes-C-Oxidized[CCO-CYTOSOL]": -2, "ASCORBATE[CCO-CYTOSOL]": -1, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "Cytochromes-C-Reduced[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-12876-an-oxidized-NrfB-protein/ASCORBATE//L-DEHYDRO-ASCORBATE/a-reduced-NrfB-protein/PROTON.86." {"an-oxidized-NrfB-protein[CCO-CYTOSOL]": -2, "ASCORBATE[CCO-CYTOSOL]": -1, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "a-reduced-NrfB-protein[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-12876-an-oxidized-TorC-protein/ASCORBATE//L-DEHYDRO-ASCORBATE/a-reduced-TorC-protein/PROTON.86." {"an-oxidized-TorC-protein[CCO-CYTOSOL]": -2, "ASCORBATE[CCO-CYTOSOL]": -1, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "a-reduced-TorC-protein[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-12876-an-oxidized-TorY-protein/ASCORBATE//L-DEHYDRO-ASCORBATE/A-REDUCED-TORY-PROTEIN/PROTON.86." {"an-oxidized-TorY-protein[CCO-CYTOSOL]": -2, "ASCORBATE[CCO-CYTOSOL]": -1, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "A-REDUCED-TORY-PROTEIN[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-12876-Cytochromes-C550-Ox/ASCORBATE//L-DEHYDRO-ASCORBATE/Cytochromes-C550-Red/PROTON.79." {"Cytochromes-C550-Ox[CCO-CYTOSOL]": -2, "ASCORBATE[CCO-CYTOSOL]": -1, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "Cytochromes-C550-Red[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-12876-Cytochromes-C552-Ox/ASCORBATE//L-DEHYDRO-ASCORBATE/Cytochromes-C552-Red/PROTON.79." {"Cytochromes-C552-Ox[CCO-CYTOSOL]": -2, "ASCORBATE[CCO-CYTOSOL]": -1, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "Cytochromes-C552-Red[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-12876-Cytochromes-C554-Ox/ASCORBATE//L-DEHYDRO-ASCORBATE/Cytochromes-C554-Red/PROTON.79." {"Cytochromes-C554-Ox[CCO-CYTOSOL]": -2, "ASCORBATE[CCO-CYTOSOL]": -1, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "Cytochromes-C554-Red[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-12876-Cytochromes-CL-Ox/ASCORBATE//L-DEHYDRO-ASCORBATE/Cytochromes-CL-Red/PROTON.75." {"Cytochromes-CL-Ox[CCO-CYTOSOL]": -2, "ASCORBATE[CCO-CYTOSOL]": -1, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "Cytochromes-CL-Red[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-12876-Oxidized-cytochromes-c2/ASCORBATE//L-DEHYDRO-ASCORBATE/Reduced-cytochromes-c2/PROTON.85." {"Oxidized-cytochromes-c2[CCO-CYTOSOL]": -2, "ASCORBATE[CCO-CYTOSOL]": -1, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "Reduced-cytochromes-c2[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-12876-Oxidized-cytochromes-c553/ASCORBATE//L-DEHYDRO-ASCORBATE/Reduced-cytochromes-c553/PROTON.89." {"Oxidized-cytochromes-c553[CCO-CYTOSOL]": -2, "ASCORBATE[CCO-CYTOSOL]": -1, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "Reduced-cytochromes-c553[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-12876-Oxidized-NapC-proteins/ASCORBATE//L-DEHYDRO-ASCORBATE/Reduced-NapC-proteins/PROTON.83." {"Oxidized-NapC-proteins[CCO-CYTOSOL]": -2, "ASCORBATE[CCO-CYTOSOL]": -1, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "Reduced-NapC-proteins[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] +"RXN-12876" {"ASCORBATE[CCO-CYTOSOL]": -1, "Cytochromes-C-Oxidized[CCO-CYTOSOL]": -2, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "Cytochromes-C-Reduced[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] +"RXN-12876-ASCORBATE/an-oxidized-NrfB-protein//L-DEHYDRO-ASCORBATE/a-reduced-NrfB-protein/PROTON.86." {"ASCORBATE[CCO-CYTOSOL]": -1, "an-oxidized-NrfB-protein[CCO-CYTOSOL]": -2, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "a-reduced-NrfB-protein[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] +"RXN-12876-ASCORBATE/an-oxidized-TorC-protein//L-DEHYDRO-ASCORBATE/a-reduced-TorC-protein/PROTON.86." {"ASCORBATE[CCO-CYTOSOL]": -1, "an-oxidized-TorC-protein[CCO-CYTOSOL]": -2, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "a-reduced-TorC-protein[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] +"RXN-12876-ASCORBATE/an-oxidized-TorY-protein//L-DEHYDRO-ASCORBATE/A-REDUCED-TORY-PROTEIN/PROTON.86." {"ASCORBATE[CCO-CYTOSOL]": -1, "an-oxidized-TorY-protein[CCO-CYTOSOL]": -2, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "A-REDUCED-TORY-PROTEIN[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] +"RXN-12876-ASCORBATE/Cytochromes-C550-Ox//L-DEHYDRO-ASCORBATE/Cytochromes-C550-Red/PROTON.79." {"ASCORBATE[CCO-CYTOSOL]": -1, "Cytochromes-C550-Ox[CCO-CYTOSOL]": -2, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "Cytochromes-C550-Red[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] +"RXN-12876-ASCORBATE/Cytochromes-C552-Ox//L-DEHYDRO-ASCORBATE/Cytochromes-C552-Red/PROTON.79." {"ASCORBATE[CCO-CYTOSOL]": -1, "Cytochromes-C552-Ox[CCO-CYTOSOL]": -2, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "Cytochromes-C552-Red[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] +"RXN-12876-ASCORBATE/Cytochromes-C554-Ox//L-DEHYDRO-ASCORBATE/Cytochromes-C554-Red/PROTON.79." {"ASCORBATE[CCO-CYTOSOL]": -1, "Cytochromes-C554-Ox[CCO-CYTOSOL]": -2, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "Cytochromes-C554-Red[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] +"RXN-12876-ASCORBATE/Cytochromes-CL-Ox//L-DEHYDRO-ASCORBATE/Cytochromes-CL-Red/PROTON.75." {"ASCORBATE[CCO-CYTOSOL]": -1, "Cytochromes-CL-Ox[CCO-CYTOSOL]": -2, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "Cytochromes-CL-Red[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] +"RXN-12876-ASCORBATE/Oxidized-cytochromes-c2//L-DEHYDRO-ASCORBATE/Reduced-cytochromes-c2/PROTON.85." {"ASCORBATE[CCO-CYTOSOL]": -1, "Oxidized-cytochromes-c2[CCO-CYTOSOL]": -2, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "Reduced-cytochromes-c2[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] +"RXN-12876-ASCORBATE/Oxidized-cytochromes-c553//L-DEHYDRO-ASCORBATE/Reduced-cytochromes-c553/PROTON.89." {"ASCORBATE[CCO-CYTOSOL]": -1, "Oxidized-cytochromes-c553[CCO-CYTOSOL]": -2, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "Reduced-cytochromes-c553[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] +"RXN-12876-ASCORBATE/Oxidized-NapC-proteins//L-DEHYDRO-ASCORBATE/Reduced-NapC-proteins/PROTON.83." {"ASCORBATE[CCO-CYTOSOL]": -1, "Oxidized-NapC-proteins[CCO-CYTOSOL]": -2, "L-DEHYDRO-ASCORBATE[CCO-CYTOSOL]": 1, "Reduced-NapC-proteins[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] "RXN-12886" {"THYMINE[CCO-CYTOSOL]": -1, "FMNH2[CCO-CYTOSOL]": -1, "NADH[CCO-CYTOSOL]": -1, "OXYGEN-MOLECULE[CCO-CYTOSOL]": -1, "CPD-22331[CCO-CYTOSOL]": 1, "FMN[CCO-CYTOSOL]": 1, "NAD[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["G6523-MONOMER"] "RXN-12893" {"CPD-69[CCO-CYTOSOL]": -1, "HCO3[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -3, "AMMONIUM[CCO-CYTOSOL]": 1, "CARBON-DIOXIDE[CCO-CYTOSOL]": 2} "L2R" ["CYANLY-CPLX"] "RXN-12894" {"CPD0-2331[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "CPD0-2339[CCO-CYTOSOL]": 1, "AMMONIUM[CCO-CYTOSOL]": 1, "CARBON-DIOXIDE[CCO-CYTOSOL]": 1} "L2R" ["G6522-MONOMER"] @@ -1626,17 +1626,17 @@ "RXN-14090[CCO-CYTOSOL]-CPD-3711/WATER//CYTIDINE/Pi.41." {"CPD-3711[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CYTIDINE[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1} "L2R" ["EG11817-MONOMER"] "RXN-14090[CCO-PERI-BAC]-CPD-3711/WATER//CYTIDINE/Pi.42." {"CPD-3711[CCO-PERI-BAC]": -1, "WATER[CCO-PERI-BAC]": -1, "CYTIDINE[CCO-PERI-BAC]": 1, "Pi[CCO-PERI-BAC]": 1} "L2R" ["ALKAPHOSPHA-CPLX", "APHA-CPLX", "CPDB-MONOMER"] "RXN-14091" {"CPD-3725[CCO-PERI-BAC]": -1, "WATER[CCO-PERI-BAC]": -1, "CPD-3724[CCO-PERI-BAC]": 1, "PROTON[CCO-PERI-BAC]": 1} "L2R" ["CPDB-MONOMER"] -"RXN-14107-an-oxidized-NrfB-protein/REDUCED-MENAQUINONE/PROTON//a-reduced-NrfB-protein/CPD-9728/PROTON.92." {"an-oxidized-NrfB-protein[CCO-PERI-BAC]": -2, "REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "PROTON[CCO-CYTOSOL]": -2, "a-reduced-NrfB-protein[CCO-PERI-BAC]": 2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] -"RXN-14107-an-oxidized-TorC-protein/REDUCED-MENAQUINONE/PROTON//a-reduced-TorC-protein/CPD-9728/PROTON.92." {"an-oxidized-TorC-protein[CCO-PERI-BAC]": -2, "REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "PROTON[CCO-CYTOSOL]": -2, "a-reduced-TorC-protein[CCO-PERI-BAC]": 2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] -"RXN-14107-an-oxidized-TorY-protein/REDUCED-MENAQUINONE/PROTON//A-REDUCED-TORY-PROTEIN/CPD-9728/PROTON.92." {"an-oxidized-TorY-protein[CCO-PERI-BAC]": -2, "REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "PROTON[CCO-CYTOSOL]": -2, "A-REDUCED-TORY-PROTEIN[CCO-PERI-BAC]": 2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] -"RXN-14107-Cytochromes-C-Oxidized/REDUCED-MENAQUINONE/PROTON//Cytochromes-C-Reduced/CPD-9728/PROTON.89." {"Cytochromes-C-Oxidized[CCO-PERI-BAC]": -2, "REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "PROTON[CCO-CYTOSOL]": -2, "Cytochromes-C-Reduced[CCO-PERI-BAC]": 2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] -"RXN-14107-Cytochromes-C550-Ox/REDUCED-MENAQUINONE/PROTON//Cytochromes-C550-Red/CPD-9728/PROTON.85." {"Cytochromes-C550-Ox[CCO-PERI-BAC]": -2, "REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "PROTON[CCO-CYTOSOL]": -2, "Cytochromes-C550-Red[CCO-PERI-BAC]": 2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] -"RXN-14107-Cytochromes-C552-Ox/REDUCED-MENAQUINONE/PROTON//Cytochromes-C552-Red/CPD-9728/PROTON.85." {"Cytochromes-C552-Ox[CCO-PERI-BAC]": -2, "REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "PROTON[CCO-CYTOSOL]": -2, "Cytochromes-C552-Red[CCO-PERI-BAC]": 2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] -"RXN-14107-Cytochromes-C554-Ox/REDUCED-MENAQUINONE/PROTON//Cytochromes-C554-Red/CPD-9728/PROTON.85." {"Cytochromes-C554-Ox[CCO-PERI-BAC]": -2, "REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "PROTON[CCO-CYTOSOL]": -2, "Cytochromes-C554-Red[CCO-PERI-BAC]": 2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] -"RXN-14107-Cytochromes-CL-Ox/REDUCED-MENAQUINONE/PROTON//Cytochromes-CL-Red/CPD-9728/PROTON.81." {"Cytochromes-CL-Ox[CCO-PERI-BAC]": -2, "REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "PROTON[CCO-CYTOSOL]": -2, "Cytochromes-CL-Red[CCO-PERI-BAC]": 2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] -"RXN-14107-Oxidized-cytochromes-c2/REDUCED-MENAQUINONE/PROTON//Reduced-cytochromes-c2/CPD-9728/PROTON.91." {"Oxidized-cytochromes-c2[CCO-PERI-BAC]": -2, "REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "PROTON[CCO-CYTOSOL]": -2, "Reduced-cytochromes-c2[CCO-PERI-BAC]": 2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] -"RXN-14107-Oxidized-cytochromes-c553/REDUCED-MENAQUINONE/PROTON//Reduced-cytochromes-c553/CPD-9728/PROTON.95." {"Oxidized-cytochromes-c553[CCO-PERI-BAC]": -2, "REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "PROTON[CCO-CYTOSOL]": -2, "Reduced-cytochromes-c553[CCO-PERI-BAC]": 2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] -"RXN-14107-Oxidized-NapC-proteins/REDUCED-MENAQUINONE/PROTON//Reduced-NapC-proteins/CPD-9728/PROTON.89." {"Oxidized-NapC-proteins[CCO-PERI-BAC]": -2, "REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "PROTON[CCO-CYTOSOL]": -2, "Reduced-NapC-proteins[CCO-PERI-BAC]": 2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] +"RXN-14107-REDUCED-MENAQUINONE/an-oxidized-NrfB-protein/PROTON//CPD-9728/a-reduced-NrfB-protein/PROTON.92." {"REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "an-oxidized-NrfB-protein[CCO-PERI-BAC]": -2, "PROTON[CCO-CYTOSOL]": -2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "a-reduced-NrfB-protein[CCO-PERI-BAC]": 2, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] +"RXN-14107-REDUCED-MENAQUINONE/an-oxidized-TorC-protein/PROTON//CPD-9728/a-reduced-TorC-protein/PROTON.92." {"REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "an-oxidized-TorC-protein[CCO-PERI-BAC]": -2, "PROTON[CCO-CYTOSOL]": -2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "a-reduced-TorC-protein[CCO-PERI-BAC]": 2, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] +"RXN-14107-REDUCED-MENAQUINONE/an-oxidized-TorY-protein/PROTON//CPD-9728/A-REDUCED-TORY-PROTEIN/PROTON.92." {"REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "an-oxidized-TorY-protein[CCO-PERI-BAC]": -2, "PROTON[CCO-CYTOSOL]": -2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "A-REDUCED-TORY-PROTEIN[CCO-PERI-BAC]": 2, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] +"RXN-14107-REDUCED-MENAQUINONE/Cytochromes-C-Oxidized/PROTON//CPD-9728/Cytochromes-C-Reduced/PROTON.89." {"REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "Cytochromes-C-Oxidized[CCO-PERI-BAC]": -2, "PROTON[CCO-CYTOSOL]": -2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "Cytochromes-C-Reduced[CCO-PERI-BAC]": 2, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] +"RXN-14107-REDUCED-MENAQUINONE/Cytochromes-C550-Ox/PROTON//CPD-9728/Cytochromes-C550-Red/PROTON.85." {"REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "Cytochromes-C550-Ox[CCO-PERI-BAC]": -2, "PROTON[CCO-CYTOSOL]": -2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "Cytochromes-C550-Red[CCO-PERI-BAC]": 2, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] +"RXN-14107-REDUCED-MENAQUINONE/Cytochromes-C552-Ox/PROTON//CPD-9728/Cytochromes-C552-Red/PROTON.85." {"REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "Cytochromes-C552-Ox[CCO-PERI-BAC]": -2, "PROTON[CCO-CYTOSOL]": -2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "Cytochromes-C552-Red[CCO-PERI-BAC]": 2, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] +"RXN-14107-REDUCED-MENAQUINONE/Cytochromes-C554-Ox/PROTON//CPD-9728/Cytochromes-C554-Red/PROTON.85." {"REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "Cytochromes-C554-Ox[CCO-PERI-BAC]": -2, "PROTON[CCO-CYTOSOL]": -2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "Cytochromes-C554-Red[CCO-PERI-BAC]": 2, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] +"RXN-14107-REDUCED-MENAQUINONE/Cytochromes-CL-Ox/PROTON//CPD-9728/Cytochromes-CL-Red/PROTON.81." {"REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "Cytochromes-CL-Ox[CCO-PERI-BAC]": -2, "PROTON[CCO-CYTOSOL]": -2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "Cytochromes-CL-Red[CCO-PERI-BAC]": 2, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] +"RXN-14107-REDUCED-MENAQUINONE/Oxidized-cytochromes-c2/PROTON//CPD-9728/Reduced-cytochromes-c2/PROTON.91." {"REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "Oxidized-cytochromes-c2[CCO-PERI-BAC]": -2, "PROTON[CCO-CYTOSOL]": -2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "Reduced-cytochromes-c2[CCO-PERI-BAC]": 2, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] +"RXN-14107-REDUCED-MENAQUINONE/Oxidized-cytochromes-c553/PROTON//CPD-9728/Reduced-cytochromes-c553/PROTON.95." {"REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "Oxidized-cytochromes-c553[CCO-PERI-BAC]": -2, "PROTON[CCO-CYTOSOL]": -2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "Reduced-cytochromes-c553[CCO-PERI-BAC]": 2, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] +"RXN-14107-REDUCED-MENAQUINONE/Oxidized-NapC-proteins/PROTON//CPD-9728/Reduced-NapC-proteins/PROTON.89." {"REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "Oxidized-NapC-proteins[CCO-PERI-BAC]": -2, "PROTON[CCO-CYTOSOL]": -2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "Reduced-NapC-proteins[CCO-PERI-BAC]": 2, "PROTON[CCO-PERI-BAC]": 4} "L2R" ["NAPC-MONOMER"] "RXN-14112" {"CPD-3713[CCO-PERI-BAC]": -1, "WATER[CCO-PERI-BAC]": -1, "CPD-3711[CCO-PERI-BAC]": 1, "PROTON[CCO-PERI-BAC]": 1} "L2R" ["CPDB-MONOMER"] "RXN-14113" {"CPD-3707[CCO-PERI-BAC]": -1, "WATER[CCO-PERI-BAC]": -1, "CPD-3706[CCO-PERI-BAC]": 1, "PROTON[CCO-PERI-BAC]": 1} "L2R" ["CPDB-MONOMER"] "RXN-14115" {"CPD-3724[CCO-PERI-BAC]": -1, "WATER[CCO-PERI-BAC]": -1, "URIDINE[CCO-PERI-BAC]": 1, "Pi[CCO-PERI-BAC]": 1} "L2R" ["ALKAPHOSPHA-CPLX", "CPDB-MONOMER"] @@ -1869,7 +1869,7 @@ "RXN-16424-Phosphorylated-Phosphoglucosamine-Mutase/CPD-13469//CPD0-1096/Phosphoglucosamine-Mutase.88." {"Phosphorylated-Phosphoglucosamine-Mutase[CCO-CYTOSOL]": -1, "CPD-13469[CCO-CYTOSOL]": -1, "CPD0-1096[CCO-CYTOSOL]": 1, "Phosphoglucosamine-Mutase[CCO-CYTOSOL]": 1} "BOTH" ["CPLX0-8583"] "RXN-16454" {"Protein-Tyrosines[CCO-CYTOSOL]": -1, "OXYGEN-MOLECULE[CCO-CYTOSOL]": -2, "TOPAQUINONE[CCO-CYTOSOL]": 1, "HYDROGEN-PEROXIDE[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" [] "RXN-16456" {"GTP[CCO-CYTOSOL]": -2, "CPD-15874[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -2, "CPD-15873[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 2} "L2R" ["EG11829-MONOMER"] -"RXN-16457" {"CPD-15870[CCO-CYTOSOL]": -1, "CPD-4[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "CPD-15874[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 2} "L2R" ["EG11829-MONOMER"] +"RXN-16457" {"CPD-15870[CCO-CYTOSOL]": -1, "CPD-4[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -2, "CPD-15874[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 2} "L2R" ["EG11829-MONOMER"] "RXN-16649[CCI-PERI-BAC-GN]-CPD-17927/WATER//CPD-17926/D-ALANINE.54." {"CPD-17927[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "CPD-17926[CCI-PERI-BAC-GN]": 1, "D-ALANINE[CCI-PERI-BAC-GN]": 1} "L2R" ["CPLX0-3951", "CPLX0-7717"] "RXN-16649[CCO-PERI-BAC]-CPD-17927/WATER//CPD-17926/D-ALANINE.51." {"CPD-17927[CCO-PERI-BAC]": -1, "WATER[CCO-PERI-BAC]": -1, "CPD-17926[CCO-PERI-BAC]": 1, "D-ALANINE[CCO-PERI-BAC]": 1} "L2R" ["EG12867-MONOMER", "G7265-MONOMER", "CPLX0-8254", "RPOA-MONOMER", "CPLX0-8252"] "RXN-16659" {"CPD-17927[CCO-PERI-BAC]": -1, "CPD-17931[CCO-PERI-BAC]": -1, "CPD-17932[CCO-PERI-BAC]": 1, "D-ALANINE[CCO-PERI-BAC]": 1} "L2R" ["EG10606-MONOMER", "EG10341-MONOMER", "CPLX0-3951", "CPLX0-7717"] @@ -2050,11 +2050,11 @@ "RXN-18435" {"DNA-With-GO[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD-12427[CCO-CYTOSOL]": 1, "5-Phospho-terminated-DNAs[CCO-CYTOSOL]": 1, "3-Prime-Phosphate-Terminated-DNAs[CCO-CYTOSOL]": 1, "CPD-21221[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" ["EG10329-MONOMER"] "RXN-18549" {"DSBBPROT-MONOMER[CCO-CYTOSOL]": -1, "UBIQUINONE-8[CCO-CYTOSOL]": -1, "MONOMER0-4142[CCO-CYTOSOL]": 1, "CPD-9956[CCO-CYTOSOL]": 1} "L2R" [] "RXN-18550" {"DSBBPROT-MONOMER[CCO-CYTOSOL]": -1, "CPD-9728[CCO-CYTOSOL]": -1, "MONOMER0-4142[CCO-CYTOSOL]": 1, "REDUCED-MENAQUINONE[CCO-CYTOSOL]": 1} "L2R" [] -"RXN-18584-Oxidized-NapC-proteins/CPD-9956//Reduced-NapC-proteins/UBIQUINONE-8/PROTON.75." {"Oxidized-NapC-proteins[CCO-PERI-BAC]": -2, "CPD-9956[CCO-PM-BAC-NEG]": -1, "Reduced-NapC-proteins[CCO-PERI-BAC]": 2, "UBIQUINONE-8[CCO-PM-BAC-NEG]": 1, "PROTON[CCO-PERI-BAC]": 2} "L2R" ["CPLX0-3241"] +"RXN-18584-CPD-9956/Oxidized-NapC-proteins//UBIQUINONE-8/Reduced-NapC-proteins/PROTON.75." {"CPD-9956[CCO-PM-BAC-NEG]": -1, "Oxidized-NapC-proteins[CCO-PERI-BAC]": -2, "UBIQUINONE-8[CCO-PM-BAC-NEG]": 1, "Reduced-NapC-proteins[CCO-PERI-BAC]": 2, "PROTON[CCO-PERI-BAC]": 2} "L2R" ["CPLX0-3241"] "RXN-18586" {"SULFO-CYSTEINE[CCO-CYTOSOL]": -1, "Red-Glutaredoxins[CCO-CYTOSOL]": -1, "CYS[CCO-CYTOSOL]": 1, "SO3[CCO-CYTOSOL]": 1, "Ox-Glutaredoxins[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["RED-GLUTAREDOXIN"] "RXN-18586-SULFO-CYSTEINE/Reduced-NrdH-Proteins//CYS/SO3/Oxidized-NrdH-Proteins/PROTON.76." {"SULFO-CYSTEINE[CCO-CYTOSOL]": -1, "Reduced-NrdH-Proteins[CCO-CYTOSOL]": -1, "CYS[CCO-CYTOSOL]": 1, "SO3[CCO-CYTOSOL]": 1, "Oxidized-NrdH-Proteins[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["RED-GLUTAREDOXIN"] -"RXN-18604-an-oxidized-NrfB-protein/REDUCED-MENAQUINONE//a-reduced-NrfB-protein/CPD-9728/PROTON.85." {"an-oxidized-NrfB-protein[CCO-PERI-BAC]": -2, "REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "a-reduced-NrfB-protein[CCO-PERI-BAC]": 2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "PROTON[CCO-PERI-BAC]": 2} "L2R" ["CPLX0-8238"] -"RXN-18605-a-reduced-NrfB-protein/NITRITE/PROTON//AMMONIUM/an-oxidized-NrfB-protein/WATER.79." {"a-reduced-NrfB-protein[CCO-PERI-BAC]": -6, "NITRITE[CCO-PERI-BAC]": -1, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "an-oxidized-NrfB-protein[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] +"RXN-18604-REDUCED-MENAQUINONE/an-oxidized-NrfB-protein//CPD-9728/a-reduced-NrfB-protein/PROTON.85." {"REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -1, "an-oxidized-NrfB-protein[CCO-PERI-BAC]": -2, "CPD-9728[CCO-PM-BAC-NEG]": 1, "a-reduced-NrfB-protein[CCO-PERI-BAC]": 2, "PROTON[CCO-PERI-BAC]": 2} "L2R" ["CPLX0-8238"] +"RXN-18605-NITRITE/a-reduced-NrfB-protein/PROTON//AMMONIUM/an-oxidized-NrfB-protein/WATER.79." {"NITRITE[CCO-PERI-BAC]": -1, "a-reduced-NrfB-protein[CCO-PERI-BAC]": -6, "PROTON[CCO-PERI-BAC]": -8, "AMMONIUM[CCO-PERI-BAC]": 1, "an-oxidized-NrfB-protein[CCO-PERI-BAC]": 6, "WATER[CCO-PERI-BAC]": 2} "L2R" [] "RXN-18678" {"signal-peptide[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "Peptides-holder[CCO-CYTOSOL]": null} "L2R" ["EG12436-MONOMER"] "RXN-18702" {"3-MERCAPTO-PYRUVATE[CCO-CYTOSOL]": -1, "TUM1-L-cysteine[CCO-CYTOSOL]": -1, "TUM1-S-sulfanylcysteine[CCO-CYTOSOL]": 1, "PYRUVATE[CCO-CYTOSOL]": 1} "L2R" ["EG11600-MONOMER"] "RXN-18703" {"TUM1-S-sulfanylcysteine[CCO-CYTOSOL]": -1, "Red-Thioredoxin[CCO-CYTOSOL]": -1, "TUM1-L-cysteine[CCO-CYTOSOL]": 1, "HS[CCO-CYTOSOL]": 1, "Ox-Thioredoxin[CCO-CYTOSOL]": 1} "L2R" ["EG11600-MONOMER"] @@ -2066,7 +2066,7 @@ "RXN-18738" {"an-Nsup3sup-methylcytosine-in-DNA[CCO-CYTOSOL]": -1, "2-KETOGLUTARATE[CCO-CYTOSOL]": -1, "OXYGEN-MOLECULE[CCO-CYTOSOL]": -1, "DNA-Cytosines[CCO-CYTOSOL]": 1, "CARBON-DIOXIDE[CCO-CYTOSOL]": 1, "FORMALDEHYDE[CCO-CYTOSOL]": 1, "SUC[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["EG10037-MONOMER"] "RXN-18739" {"CPD-20035[CCO-CYTOSOL]": -1, "2-KETOGLUTARATE[CCO-CYTOSOL]": -1, "OXYGEN-MOLECULE[CCO-CYTOSOL]": -1, "DAMP[CCO-CYTOSOL]": 1, "FORMALDEHYDE[CCO-CYTOSOL]": 1, "SUC[CCO-CYTOSOL]": 1, "CARBON-DIOXIDE[CCO-CYTOSOL]": 1} "L2R" ["EG10037-MONOMER"] "RXN-18804" {"GLT[CCO-CYTOSOL]": -1, "ATP[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "CPD-20105[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 1} "L2R" ["GLURS-MONOMER"] -"RXN-18819" {"RIBOSE[CCO-CYTOSOL]": -1, "GLY[CCO-CYTOSOL]": -1, "CPD-10204[CCO-CYTOSOL]": 1, "GLY[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 2} "L2R" [] +"RXN-18819" {"D-Ribose[CCO-CYTOSOL]": -1, "GLY[CCO-CYTOSOL]": -1, "CPD-10204[CCO-CYTOSOL]": 1, "GLY[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 2} "L2R" [] "RXN-18819-CPD-10330/GLY//CPD-10204/GLY/WATER.35." {"CPD-10330[CCO-CYTOSOL]": -1, "GLY[CCO-CYTOSOL]": -1, "CPD-10204[CCO-CYTOSOL]": 1, "GLY[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 2} "L2R" [] "RXN-18819-CPD-15818/GLY//CPD-10204/GLY/WATER.35." {"CPD-15818[CCO-CYTOSOL]": -1, "GLY[CCO-CYTOSOL]": -1, "CPD-10204[CCO-CYTOSOL]": 1, "GLY[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 2} "L2R" [] "RXN-18819-CPD-15829/GLY//CPD-10204/GLY/WATER.35." {"CPD-15829[CCO-CYTOSOL]": -1, "GLY[CCO-CYTOSOL]": -1, "CPD-10204[CCO-CYTOSOL]": 1, "GLY[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 2} "L2R" [] @@ -2095,7 +2095,7 @@ "RXN-19334" {"CPD-20904[CCO-CYTOSOL]": -2, "Reduced-Flavoproteins[CCO-CYTOSOL]": -1, "CPD-20905[CCO-CYTOSOL]": 2, "Oxidized-Flavoproteins[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] "RXN-19338" {"Reduced-Flavoproteins[CCO-CYTOSOL]": -1, "CPD-20906[CCO-CYTOSOL]": -2, "Oxidized-Flavoproteins[CCO-CYTOSOL]": 1, "CPD-20907[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] "RXN-19340" {"Corrinoid-Adenosyltransferases[CCO-CYTOSOL]": -1, "CPD-1829[CCO-CYTOSOL]": -1, "CPD-20904[CCO-CYTOSOL]": 1} "L2R" [] -"RXN-19341" {"COB-I-ALAMIN[CCO-CYTOSOL]": -2, "Oxidized-Flavoproteins[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -2, "Reduced-Flavoproteins[CCO-CYTOSOL]": 1, "CPD-1829[CCO-CYTOSOL]": 2} "L2R" [] +"RXN-19341" {"Oxidized-Flavoproteins[CCO-CYTOSOL]": -1, "COB-I-ALAMIN[CCO-CYTOSOL]": -2, "PROTON[CCO-CYTOSOL]": -2, "Reduced-Flavoproteins[CCO-CYTOSOL]": 1, "CPD-1829[CCO-CYTOSOL]": 2} "L2R" [] "RXN-19342" {"CPD-20903[CCO-CYTOSOL]": -1, "Corrinoid-Adenosyltransferases[CCO-CYTOSOL]": -1, "CPD-20906[CCO-CYTOSOL]": 1} "L2R" ["COBALADENOSYLTRANS-MONOMER"] "RXN-19343" {"ATP[CCO-CYTOSOL]": -2, "CPD-20907[CCO-CYTOSOL]": -2, "PROTON[CCO-CYTOSOL]": -2, "ADENOSYLCOBINAMIDE[CCO-CYTOSOL]": 2, "P3I[CCO-CYTOSOL]": 2, "Corrinoid-Adenosyltransferases[CCO-CYTOSOL]": 2} "L2R" ["COBALADENOSYLTRANS-MONOMER"] "RXN-19366" {"B12-Corrinoid-Adenosyltranferase[CCO-CYTOSOL]": -1, "Corrinoid-Adenosyltransferases[CCO-CYTOSOL]": 1, "ADENOSYLCOBALAMIN[CCO-CYTOSOL]": 1} "L2R" [] @@ -2116,6 +2116,7 @@ "RXN-19619" {"TRIMETHYLAMINE[CCO-PERI-BAC]": -1, "an-oxidized-TorY-protein[CCO-PERI-BAC]": -2, "WATER[CCO-PERI-BAC]": -1, "TRIMETHYLAMINE-N-O[CCO-PERI-BAC]": 1, "A-REDUCED-TORY-PROTEIN[CCO-PERI-BAC]": 2, "PROTON[CCO-PERI-BAC]": 3} "R2L" ["G7022-MONOMER"] "RXN-19629" {"SULFO-CYSTEINE[CCO-CYTOSOL]": -1, "GLUTATHIONE[CCO-CYTOSOL]": -2, "OXIDIZED-GLUTATHIONE[CCO-CYTOSOL]": 1, "CYS[CCO-CYTOSOL]": 1, "SO3[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["RED-GLUTAREDOXIN"] "RXN-19630" {"L-1-PHOSPHATIDYL-ETHANOLAMINE[CCO-CYTOSOL]": -2, "CELLULOSE[CCO-CYTOSOL]": -1, "DIACYLGLYCEROL[CCO-CYTOSOL]": 2, "phosphoethanolamine-cellulose[CCO-CYTOSOL]": 1} "L2R" ["EG12265-MONOMER"] +"RXN-19659" {"CARBAMATE[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "AMMONIUM[CCO-CYTOSOL]": 1, "HCO3[CCO-CYTOSOL]": 1} "BOTH" [] "RXN-19726" {"glycyl-tRNAAla[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GLY[CCO-CYTOSOL]": 1, "ALA-tRNAs[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ALAS-CPLX", "CPLX0-3581"] "RXN-19727" {"D-tyrosyl-tRNA-Tyr[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "D-TYROSINE[CCO-CYTOSOL]": 1, "TYR-tRNAs[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-3581"] "RXN-19728" {"D-aspartyl-tRNA-Asp[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD-302[CCO-CYTOSOL]": 1, "ASP-tRNAs[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-3581"] @@ -2249,9 +2250,9 @@ "RXN-21408" {"ATP[CCO-CYTOSOL]": -1, "CcmAB-Complex[CCO-CYTOSOL]": -1, "CcmCDE-Complex-Heme[CCO-CYTOSOL]": -1, "CcmABCD-Complex[CCO-CYTOSOL]": 1, "CcmE-Protein-Heme[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1} "L2R" ["CPLX-9493"] "RXN-21410-an-oxidized-DsbD-protein/Reduced-CcmG-Proteins//a-reduced-DsbD-protein/Oxidized-CcmG-Proteins.94." {"an-oxidized-DsbD-protein[CCO-PM-BAC-NEG]": -1, "Reduced-CcmG-Proteins[CCO-PERI-BAC]": -1, "a-reduced-DsbD-protein[CCO-PM-BAC-NEG]": 1, "Oxidized-CcmG-Proteins[CCO-PERI-BAC]": 1} "R2L" ["DSBD-MONOMER"] "RXN-21421" {"Oxidized-CcmG-Proteins[CCO-CYTOSOL]": -1, "Apocytochromes-c[CCO-CYTOSOL]": -1, "Reduced-CcmG-Proteins[CCO-CYTOSOL]": 1, "Apocytochromes-c-Disulfide[CCO-CYTOSOL]": 1} "R2L" ["EG12053-MONOMER"] -"RXN-21422" {"CytC-CcmH[CCO-CYTOSOL]": -1, "Apocytochromes-c[CCO-CYTOSOL]": 1, "Oxidized-CcmH-Proteins[CCO-CYTOSOL]": 1} "R2L" ["EG12052-MONOMER"] +"RXN-21422" {"CytC-CcmH[CCO-CYTOSOL]": -1, "Oxidized-CcmH-Proteins[CCO-CYTOSOL]": 1, "Apocytochromes-c[CCO-CYTOSOL]": 1} "R2L" ["EG12052-MONOMER"] "RXN-21423" {"CytC-CcmH[CCO-CYTOSOL]": -1, "CcmE-Protein-Heme[CCO-CYTOSOL]": -1, "CytC-CcmH-Heme-CcmE[CCO-CYTOSOL]": 1} "L2R" ["EG12054-MONOMER"] -"RXN-21424" {"Reduced-CcmG-Proteins[CCO-CYTOSOL]": -1, "CytC-CcmH-Heme-CcmE[CCO-CYTOSOL]": -1, "ETR-Quinols[CCO-CYTOSOL]": -1, "CcmH-CcmG[CCO-CYTOSOL]": 1, "Cytochromes-c[CCO-CYTOSOL]": 1, "CcmE-Proteins[CCO-CYTOSOL]": 1, "ETR-Semiquinones[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["EG12053-MONOMER"] +"RXN-21424" {"Reduced-CcmG-Proteins[CCO-CYTOSOL]": -1, "CytC-CcmH-Heme-CcmE[CCO-CYTOSOL]": -1, "ETR-Quinols[CCO-CYTOSOL]": -1, "CcmH-CcmG[CCO-CYTOSOL]": 1, "CcmE-Proteins[CCO-CYTOSOL]": 1, "Cytochromes-c[CCO-CYTOSOL]": 1, "ETR-Semiquinones[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["EG12053-MONOMER"] "RXN-21425" {"CcmH-CcmG[CCO-CYTOSOL]": -1, "Oxidized-CcmG-Proteins[CCO-CYTOSOL]": 1, "Reduced-CcmH-Proteins[CCO-CYTOSOL]": 1} "L2R" ["EG12053-MONOMER"] "RXN-21426" {"an-oxidized-DsbA-protein[CCO-CYTOSOL]": -1, "Apocytochromes-c[CCO-CYTOSOL]": -1, "a-reduced-DsbA-protein[CCO-CYTOSOL]": 1, "Apocytochromes-c-Disulfide[CCO-CYTOSOL]": 1} "L2R" ["DISULFOXRED-MONOMER"] "RXN-21426-MONOMER0-4152/Apocytochromes-c//DISULFOXRED-MONOMER/Apocytochromes-c-Disulfide.79." {"MONOMER0-4152[CCO-CYTOSOL]": -1, "Apocytochromes-c[CCO-CYTOSOL]": -1, "DISULFOXRED-MONOMER[CCO-CYTOSOL]": 1, "Apocytochromes-c-Disulfide[CCO-CYTOSOL]": 1} "L2R" ["DISULFOXRED-MONOMER"] @@ -2272,10 +2273,10 @@ "RXN-21539-CPD-1302/Methionine-synthase-cob-I-alamins/PROTON//CPD-1301/METHIONINE-SYNTHASE-METHYLCOBALAMIN.96." {"CPD-1302[CCO-CYTOSOL]": -1, "Methionine-synthase-cob-I-alamins[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "CPD-1301[CCO-CYTOSOL]": 1, "METHIONINE-SYNTHASE-METHYLCOBALAMIN[CCO-CYTOSOL]": 1} "L2R" ["HOMOCYSMETB12-MONOMER"] "RXN-21550" {"Loaded-Mo-bis-MGD-Chaperones[CCO-CYTOSOL]": -1, "Mo-bis-MGD-Chaperone-Cys-Persulfide[CCO-CYTOSOL]": -1, "Donor-H2[CCO-CYTOSOL]": -1, "Mo-bis-MGD-Chaperone-L-cysteine[CCO-CYTOSOL]": 1, "CPD-23449[CCO-CYTOSOL]": 1, "Acceptor[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8175"] "RXN-21562" {"Mo-bis-MGD-Chaperones[CCO-CYTOSOL]": -1, "CPD-15873[CCO-CYTOSOL]": -1, "Loaded-Mo-bis-MGD-Chaperones[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8175"] -"RXN-21563" {"CPD-8122[CCO-CYTOSOL]": -1, "CPD-3[CCO-CYTOSOL]": -1, "AMP[CCO-CYTOSOL]": 1, "CPD-15870[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8045"] +"RXN-21563" {"CPD-8122[CCO-CYTOSOL]": -1, "CPD-3[CCO-CYTOSOL]": -1, "AMP[CCO-CYTOSOL]": 1, "CPD-15870[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" ["CPLX0-8045"] "RXN-21565" {"L-Cysteine-Desulfurase-persulfide[CCO-CYTOSOL]": -1, "Mo-bis-MGD-Chaperone-L-cysteine[CCO-CYTOSOL]": -1, "Cysteine-Desulfurase-L-cysteine[CCO-CYTOSOL]": 1, "Mo-bis-MGD-Chaperone-Cys-Persulfide[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-248"] "RXN-21566" {"CYS[CCO-CYTOSOL]": -1, "Mo-bis-MGD-Chaperone-L-cysteine[CCO-CYTOSOL]": -1, "L-ALPHA-ALANINE[CCO-CYTOSOL]": 1, "Mo-bis-MGD-Chaperone-Cys-Persulfide[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-248"] -"RXN-21601" {"GTP[CCO-CYTOSOL]": -2, "CPD-15870[CCO-CYTOSOL]": -1, "CPD-4[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -3, "CPD-15873[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 2, "WATER[CCO-CYTOSOL]": 2} "L2R" ["EG11829-MONOMER"] +"RXN-21601" {"GTP[CCO-CYTOSOL]": -2, "CPD-15870[CCO-CYTOSOL]": -1, "CPD-4[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -4, "CPD-15873[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 2, "WATER[CCO-CYTOSOL]": 2} "L2R" ["EG11829-MONOMER"] "RXN-21728" {"N7-METHYLGUANINE-IN-DNA[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "DNA-containing-abasic-Sites[CCO-CYTOSOL]": 1, "CPD0-2377[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["G6471-MONOMER"] "RXN-21858" {"CPD-14736[CCO-CYTOSOL]": -1, "2-KETOGLUTARATE[CCO-CYTOSOL]": -1, "KYNURENATE[CCO-CYTOSOL]": 1, "GLT[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ASPAMINOTRANS-DIMER"] "RXN-21990" {"PREPHENATE[CCO-CYTOSOL]": -1, "23S-rRNA-cytosine-2501[CCO-CYTOSOL]": -1, "Acceptor[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "PHENYL-PYRUVATE[CCO-CYTOSOL]": 1, "5-Hydroxy-23S-rRNA-Cytosines2501[CCO-CYTOSOL]": 1, "CARBON-DIOXIDE[CCO-CYTOSOL]": 1, "Donor-H2[CCO-CYTOSOL]": 1} "L2R" ["G6746-MONOMER"] @@ -2363,22 +2364,6 @@ "RXN-23584" {"CPD-15554[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "HOMO-SER[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" [] "RXN-23715" {"CPD-660[CCO-CYTOSOL]": -1, "NAD[CCO-CYTOSOL]": -1, "OXALACETIC_ACID[CCO-CYTOSOL]": 1, "NADH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["G6986-MONOMER"] "RXN-23850" {"NITRIC-OXIDE[CCO-CYTOSOL]": -1, "Acceptor[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "NITRITE[CCO-CYTOSOL]": 1, "Donor-H1[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "R2L" ["G7866-MONOMER"] -"RXN-23881-CPD-12085/WATER//CYS/AMP/PROTON.32." {"CPD-12085[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CYS[CCO-CYTOSOL]": 1, "AMP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-23881-CPD-18588/WATER//L-ALPHA-ALANINE/AMP/PROTON.44." {"CPD-18588[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "L-ALPHA-ALANINE[CCO-CYTOSOL]": 1, "AMP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-23881-CPD-20105/WATER//GLT/AMP/PROTON.32." {"CPD-20105[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GLT[CCO-CYTOSOL]": 1, "AMP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-23881-CPD-20571/WATER//PRO/AMP/PROTON.32." {"CPD-20571[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "PRO[CCO-CYTOSOL]": 1, "AMP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-23881-CPD-21003/WATER//TRP/AMP/PROTON.32." {"CPD-21003[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "TRP[CCO-CYTOSOL]": 1, "AMP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-23881-CPD-21008/WATER//ARG/AMP/PROTON.32." {"CPD-21008[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "ARG[CCO-CYTOSOL]": 1, "AMP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-23881-CPD-22724/WATER//ASN/AMP/PROTON.32." {"CPD-22724[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "ASN[CCO-CYTOSOL]": 1, "AMP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-23881-CPD-24910/WATER//LYS/AMP/PROTON.32." {"CPD-24910[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "LYS[CCO-CYTOSOL]": 1, "AMP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-23881-CPD-25513/WATER//TYR/AMP/PROTON.32." {"CPD-25513[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "TYR[CCO-CYTOSOL]": 1, "AMP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-23881-CPD-26469/WATER//HIS/AMP/PROTON.32." {"CPD-26469[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "HIS[CCO-CYTOSOL]": 1, "AMP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-23881-CPD-26472/WATER//MET/AMP/PROTON.32." {"CPD-26472[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "MET[CCO-CYTOSOL]": 1, "AMP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-23881-CPD-26474/WATER//GLN/AMP/PROTON.32." {"CPD-26474[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GLN[CCO-CYTOSOL]": 1, "AMP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-23881-CPD-26476/WATER//L-ORNITHINE/AMP/PROTON.40." {"CPD-26476[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "L-ORNITHINE[CCO-CYTOSOL]": 1, "AMP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-23881-CPD0-915/WATER//L-ASPARTATE/AMP/PROTON.39." {"CPD0-915[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "L-ASPARTATE[CCO-CYTOSOL]": 1, "AMP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-23881-SERYL-AMP/WATER//SER/AMP/PROTON.32." {"SERYL-AMP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "SER[CCO-CYTOSOL]": 1, "AMP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" [] -"RXN-23884" {"Mischarged-tRNAs[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "tRNAs[CCO-CYTOSOL]": 1, "L-Amino-Acids[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" [] "RXN-23888" {"HIS[CCO-CYTOSOL]": -1, "ATP[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "CPD-26469[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 1} "L2R" ["HISS-CPLX"] "RXN-23889" {"ILE[CCO-CYTOSOL]": -1, "ATP[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "CPD-26473[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 1} "L2R" ["ILES-MONOMER"] "RXN-23890" {"LEU[CCO-CYTOSOL]": -1, "ATP[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "CPD-26470[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 1} "L2R" ["LEUS-MONOMER"] @@ -2412,7 +2397,7 @@ "RXN-24132-CPD-26678/NADH//HSCN/NAD/WATER.31." {"CPD-26678[CCO-CYTOSOL]": -1, "NADH[CCO-CYTOSOL]": -1, "HSCN[CCO-CYTOSOL]": 1, "NAD[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8542"] "RXN-24132-CPD-26678/NADPH//HSCN/NADP/WATER.33." {"CPD-26678[CCO-CYTOSOL]": -1, "NADPH[CCO-CYTOSOL]": -1, "HSCN[CCO-CYTOSOL]": 1, "NADP[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8542"] "RXN-24141" {"CPD-8122[CCO-CYTOSOL]": -1, "CPD-3[CCO-CYTOSOL]": -1, "CPD-26686[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8045"] -"RXN-24142" {"CPD-26686[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "CPD-26685[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8045"] +"RXN-24142" {"CPD-26686[CCO-CYTOSOL]": -1, "CPD-26685[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8045"] "RXN-24143" {"CPD-26685[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "AMP[CCO-CYTOSOL]": 1, "CPD-15870[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 2} "L2R" ["CPLX0-8045"] "RXN-24169" {"CPD-9115[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "CPD-258[CCI-PERI-BAC-GN]": 1, "D-galactopyranose[CCI-PERI-BAC-GN]": 1, "PROTON[CCI-PERI-BAC-GN]": 1} "L2R" ["EG12013-MONOMER"] "RXN-24169-CPD-9115/WATER//CPD-258/ALPHA-D-GALACTOSE/PROTON.49." {"CPD-9115[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "CPD-258[CCI-PERI-BAC-GN]": 1, "ALPHA-D-GALACTOSE[CCI-PERI-BAC-GN]": 1, "PROTON[CCI-PERI-BAC-GN]": 1} "L2R" ["EG12013-MONOMER"] @@ -2421,6 +2406,11 @@ "RXN-24170-CPD-21655/WATER//CPD-258/ALPHA-GLUCOSE/PROTON.46." {"CPD-21655[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "CPD-258[CCI-PERI-BAC-GN]": 1, "ALPHA-GLUCOSE[CCI-PERI-BAC-GN]": 1, "PROTON[CCI-PERI-BAC-GN]": 1} "L2R" ["EG12013-MONOMER"] "RXN-24170-CPD-21655/WATER//CPD-258/GLC/PROTON.36." {"CPD-21655[CCI-PERI-BAC-GN]": -1, "WATER[CCI-PERI-BAC-GN]": -1, "CPD-258[CCI-PERI-BAC-GN]": 1, "GLC[CCI-PERI-BAC-GN]": 1, "PROTON[CCI-PERI-BAC-GN]": 1} "L2R" ["EG12013-MONOMER"] "RXN-2425" {"3-HYDROXYADIPYL-COA[CCO-CYTOSOL]": -1, "TRANS-23-DEHYDROADIPYL-COA[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "BOTH" ["G6714-MONOMER"] +"RXN-24399" {"tyrosylated-ssDNA[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "5-phosphooligonucleotides[CCO-CYTOSOL]": 1, "A-DNMP-L-TYROSINE[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX-3946"] +"RXN-24479-SELENITE/CPD-9728/WATER//SELENATE/REDUCED-MENAQUINONE.54." {"SELENITE[CCO-CYTOSOL]": -1, "CPD-9728[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "SELENATE[CCO-CYTOSOL]": 1, "REDUCED-MENAQUINONE[CCO-CYTOSOL]": 1} "R2L" ["CPLX0-1601"] +"RXN-24479-SELENITE/CPD0-1118/WATER//SELENATE/CPD0-2061.45." {"SELENITE[CCO-CYTOSOL]": -1, "CPD0-1118[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "SELENATE[CCO-CYTOSOL]": 1, "CPD0-2061[CCO-CYTOSOL]": 1} "R2L" ["CPLX0-1601"] +"RXN-24479-SELENITE/DEMETHYLMENAQUINONE/WATER//SELENATE/CPD-12115.55." {"SELENITE[CCO-CYTOSOL]": -1, "DEMETHYLMENAQUINONE[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "SELENATE[CCO-CYTOSOL]": 1, "CPD-12115[CCO-CYTOSOL]": 1} "R2L" ["CPLX0-1601"] +"RXN-24479-SELENITE/UBIQUINONE-8/WATER//SELENATE/CPD-9956.47." {"SELENITE[CCO-CYTOSOL]": -1, "UBIQUINONE-8[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "SELENATE[CCO-CYTOSOL]": 1, "CPD-9956[CCO-CYTOSOL]": 1} "R2L" ["CPLX0-1601"] "RXN-2881-FORMALDEHYDE/CPD-1301//CPD-12996/WATER.39." {"FORMALDEHYDE[CCO-CYTOSOL]": -1, "CPD-1301[CCO-CYTOSOL]": -1, "CPD-12996[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" [] "RXN-2881-FORMALDEHYDE/THF//METHYLENE-THF/WATER.38." {"FORMALDEHYDE[CCO-CYTOSOL]": -1, "THF[CCO-CYTOSOL]": -1, "METHYLENE-THF[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" [] "RXN-2961" {"S-HYDROXYMETHYLGLUTATHIONE[CCO-CYTOSOL]": -1, "FORMALDEHYDE[CCO-CYTOSOL]": 1, "GLUTATHIONE[CCO-CYTOSOL]": 1} "R2L" [] @@ -2639,7 +2629,6 @@ "RXN0-2044" {"3-HYDROXYADIPYL-COA[CCO-CYTOSOL]": -1, "NAD[CCO-CYTOSOL]": -1, "3-KETO-ADIPYL-COA[CCO-CYTOSOL]": 1, "NADH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "BOTH" ["G6716-MONOMER"] "RXN0-2061" {"UDP-MURNAC-TETRAPEPTIDE[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "D-ALANINE[CCO-CYTOSOL]": 1, "UDP-AAGM-DIAMINOHEPTANEDIOATE[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8616"] "RXN0-21" {"ATP[CCO-CYTOSOL]": -1, "GLUTATHIONE[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "ADP[CCO-CYTOSOL]": 1, "GLUTATHIONE[CCO-PERI-BAC]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ABC-6-CPLX"] -"RXN0-2101" {"SELENITE[CCO-CYTOSOL]": -1, "Acceptor[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "SELENATE[CCO-CYTOSOL]": 1, "Donor-H2[CCO-CYTOSOL]": 1} "R2L" ["CPLX0-1601"] "RXN0-2141" {"Cis-delta-3-decenoyl-ACPs[CCO-CYTOSOL]": -1, "MALONYL-ACP[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "b-Keto-cis-D5-dodecenoyl-ACPs[CCO-CYTOSOL]": 1, "ACP[CCO-CYTOSOL]": 1, "CARBON-DIOXIDE[CCO-CYTOSOL]": 1} "L2R" ["FABB-CPLX"] "RXN0-2142" {"b-Hydroxy-cis-D5-dodecenoyl-ACPs[CCO-CYTOSOL]": -1, "NADP[CCO-CYTOSOL]": -1, "b-Keto-cis-D5-dodecenoyl-ACPs[CCO-CYTOSOL]": 1, "NADPH[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "R2L" ["CPLX0-8005"] "RXN0-2144" {"b-Hydroxy-cis-D5-dodecenoyl-ACPs[CCO-CYTOSOL]": -1, "Trans-D3-cis-D5-dodecenoyl-ACPs[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["FABZ-CPLX"] @@ -2783,9 +2772,9 @@ "RXN0-5186" {"FRU1P[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "BETA-D-FRUCTOSE[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1} "L2R" ["G7408-MONOMER", "EG11470-MONOMER", "EG11195-MONOMER", "G7187-MONOMER", "G6425-MONOMER"] "RXN0-5187[CCO-CYTOSOL]-FMN/WATER//RIBOFLAVIN/Pi.38." {"FMN[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "RIBOFLAVIN[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1} "L2R" ["EG11202-MONOMER", "G6442-MONOMER"] "RXN0-5187[CCO-PERI-BAC]-FMN/WATER//RIBOFLAVIN/Pi.39." {"FMN[CCO-PERI-BAC]": -1, "WATER[CCO-PERI-BAC]": -1, "RIBOFLAVIN[CCO-PERI-BAC]": 1, "Pi[CCO-PERI-BAC]": 1} "L2R" ["ALKAPHOSPHA-CPLX"] -"RXN0-5190[CCI-PERI-BAC-GN]-Nascent-peptidoglycan-dimer//NAcMur-Peptide-NAcGlc-Undecaprenols/GlcNAc-1-6-anhydro-MurNAc-pentapeptide.121." {"Nascent-peptidoglycan-dimer[CCI-PERI-BAC-GN]": -1, "NAcMur-Peptide-NAcGlc-Undecaprenols[CCI-PERI-BAC-GN]": 1, "GlcNAc-1-6-anhydro-MurNAc-pentapeptide[CCI-PERI-BAC-GN]": 1} "L2R" [] -"RXN0-5190[CCO-CYTOSOL]-Nascent-peptidoglycan-dimer//NAcMur-Peptide-NAcGlc-Undecaprenols/GlcNAc-1-6-anhydro-MurNAc-pentapeptide.117." {"Nascent-peptidoglycan-dimer[CCO-CYTOSOL]": -1, "NAcMur-Peptide-NAcGlc-Undecaprenols[CCO-CYTOSOL]": 1, "GlcNAc-1-6-anhydro-MurNAc-pentapeptide[CCO-CYTOSOL]": 1} "L2R" [] -"RXN0-5190[CCO-PERI-BAC]-Nascent-peptidoglycan-dimer//NAcMur-Peptide-NAcGlc-Undecaprenols/GlcNAc-1-6-anhydro-MurNAc-pentapeptide.118." {"Nascent-peptidoglycan-dimer[CCO-PERI-BAC]": -1, "NAcMur-Peptide-NAcGlc-Undecaprenols[CCO-PERI-BAC]": 1, "GlcNAc-1-6-anhydro-MurNAc-pentapeptide[CCO-PERI-BAC]": 1} "L2R" [] +"RXN0-5190[CCI-PERI-BAC-GN]-Nascent-peptidoglycan-dimer//GlcNAc-1-6-anhydro-MurNAc-pentapeptide/NAcMur-5Peptide-NAcGlc-Undecaprenols.122." {"Nascent-peptidoglycan-dimer[CCI-PERI-BAC-GN]": -1, "GlcNAc-1-6-anhydro-MurNAc-pentapeptide[CCI-PERI-BAC-GN]": 1, "NAcMur-5Peptide-NAcGlc-Undecaprenols[CCI-PERI-BAC-GN]": 1} "L2R" [] +"RXN0-5190[CCO-CYTOSOL]-Nascent-peptidoglycan-dimer//GlcNAc-1-6-anhydro-MurNAc-pentapeptide/NAcMur-5Peptide-NAcGlc-Undecaprenols.118." {"Nascent-peptidoglycan-dimer[CCO-CYTOSOL]": -1, "GlcNAc-1-6-anhydro-MurNAc-pentapeptide[CCO-CYTOSOL]": 1, "NAcMur-5Peptide-NAcGlc-Undecaprenols[CCO-CYTOSOL]": 1} "L2R" [] +"RXN0-5190[CCO-PERI-BAC]-Nascent-peptidoglycan-dimer//GlcNAc-1-6-anhydro-MurNAc-pentapeptide/NAcMur-5Peptide-NAcGlc-Undecaprenols.119." {"Nascent-peptidoglycan-dimer[CCO-PERI-BAC]": -1, "GlcNAc-1-6-anhydro-MurNAc-pentapeptide[CCO-PERI-BAC]": 1, "NAcMur-5Peptide-NAcGlc-Undecaprenols[CCO-PERI-BAC]": 1} "L2R" [] "RXN0-5192" {"LYS[CCO-CYTOSOL]": -1, "CPD0-1032[CCO-CYTOSOL]": 1} "BOTH" ["G7836-MONOMER"] "RXN0-5194" {"General-Protein-Substrates[CCO-CYTOSOL]": -1, "S-ADENOSYLMETHIONINE[CCO-CYTOSOL]": -1, "General-Methyl-Protein-Substrates[CCO-CYTOSOL]": 1} "BOTH" [] "RXN0-5195-General-Protein-Substrates/WATER//Peptides-holder/PROTON.57." {"General-Protein-Substrates[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "Peptides-holder[CCO-CYTOSOL]": 2, "PROTON[CCO-CYTOSOL]": 2} "L2R" ["EG10696-MONOMER"] @@ -2885,7 +2874,7 @@ "RXN0-6259-PROTOPORPHYRIN_IX/REDUCED-MENAQUINONE//PROTOPORPHYRINOGEN/CPD-9728.67." {"PROTOPORPHYRIN_IX[CCO-CYTOSOL]": -1, "REDUCED-MENAQUINONE[CCO-PM-BAC-NEG]": -3, "PROTOPORPHYRINOGEN[CCO-CYTOSOL]": 1, "CPD-9728[CCO-PM-BAC-NEG]": 3} "R2L" ["CPLX0-7811"] "RXN0-6271" {"ATP[CCO-CYTOSOL]": -1, "G6345-MONOMER[CCI-PM-BAC-NEG-GN]": -1, "ADP[CCO-CYTOSOL]": 1, "PHOSPHO-DPIB[CCI-PM-BAC-NEG-GN]": 1} "L2R" [] "RXN0-6272" {"PHOSPHO-DPIB[CCI-PM-BAC-NEG-GN]": -1, "G6346-MONOMER[CCO-CYTOSOL]": -1, "G6345-MONOMER[CCI-PM-BAC-NEG-GN]": 1, "PHOSPHO-DPIA[CCO-CYTOSOL]": 1} "L2R" [] -"RXN0-6274" {"CPD-4211[CCO-CYTOSOL]": -1, "tRNA-Adenosines-37[CCO-CYTOSOL]": -1, "6-Dimethylallyladenosine37-tRNAs[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 1} "L2R" ["EG10595-MONOMER"] +"RXN0-6274" {"CPD-4211[CCO-CYTOSOL]": -1, "tRNA-adenine-37[CCO-CYTOSOL]": -1, "6-Dimethylallyladenosine37-tRNAs[CCO-CYTOSOL]": 1, "PPI[CCO-CYTOSOL]": 1} "L2R" ["EG10595-MONOMER"] "RXN0-6277" {"CPD-722[CCO-CYTOSOL]": -1, "Red-Thioredoxin[CCO-CYTOSOL]": -1, "Ox-Thioredoxin[CCO-CYTOSOL]": 1, "BIOTIN[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["EG10124-MONOMER"] "RXN0-6277-CPD-722/Red-thioredoxins-1//Ox-thioredoxins-1/BIOTIN/WATER.59." {"CPD-722[CCO-CYTOSOL]": -1, "Red-thioredoxins-1[CCO-CYTOSOL]": -1, "Ox-thioredoxins-1[CCO-CYTOSOL]": 1, "BIOTIN[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["EG10124-MONOMER"] "RXN0-6277-CPD-722/Reduced-CcmG-Proteins//Oxidized-CcmG-Proteins/BIOTIN/WATER.67." {"CPD-722[CCO-CYTOSOL]": -1, "Reduced-CcmG-Proteins[CCO-CYTOSOL]": -1, "Oxidized-CcmG-Proteins[CCO-CYTOSOL]": 1, "BIOTIN[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["EG10124-MONOMER"] @@ -2927,7 +2916,7 @@ "RXN0-6499" {"UHPA-MONOMER[CCO-CYTOSOL]": -1, "PHOSPHO-UHPB[CCO-CYTOSOL]": -1, "CPLX0-7754[CCO-CYTOSOL]": 1, "UHPB-MONOMER[CCO-CYTOSOL]": 1} "L2R" [] "RXN0-6501" {"PHOSPHO-KDPD[CCO-PM-BAC-NEG]": -1, "KDPE-MONOMER[CCO-CYTOSOL]": -1, "CPLX0-7795[CCO-CYTOSOL]": 1, "KDPD-CPLX[CCO-PM-BAC-NEG]": 1} "BOTH" [] "RXN0-6502" {"ATP[CCO-CYTOSOL]": -1, "CPLX0-7870[CCO-PM-BAC-NEG]": -1, "PHOSPHO-ATOS[CCO-PM-BAC-NEG]": 1, "ADP[CCO-CYTOSOL]": 1} "L2R" [] -"RXN0-6503" {"PHOSPHO-ENVZ[CCO-PM-BAC-NEG]": -1, "OMPR-MONOMER[CCO-CYTOSOL]": -1, "ENVZ-CPLX[CCO-PM-BAC-NEG]": 1, "PHOSPHO-OMPR[CCO-CYTOSOL]": 1} "L2R" [] +"RXN0-6503" {"PHOSPHO-ENVZ[CCI-PM-BAC-NEG-GN]": -1, "CPLX0-8285[CCO-CYTOSOL]": -1, "ENVZ-CPLX[CCI-PM-BAC-NEG-GN]": 1, "PHOSPHO-OMPR[CCO-CYTOSOL]": 1} "L2R" [] "RXN0-6506" {"EG12385-MONOMER[CCI-PM-BAC-NEG-GN]": -1, "MONOMER0-4194[CCI-PM-BAC-NEG-GN]": -1, "MONOMER0-4189[CCO-PM-BAC-NEG]": 1, "RCSC-MONOMER[CCI-PM-BAC-NEG-GN]": 1} "L2R" [] "RXN0-6507" {"PHOSPHO-RCSC[CCO-PM-BAC-NEG]": -1, "MONOMER0-4194[CCI-PM-BAC-NEG-GN]": 1} "L2R" [] "RXN0-6509" {"RCSB-MONOMER[CCO-CYTOSOL]": -1, "MONOMER0-4189[CCO-PM-BAC-NEG]": -1, "EG12385-MONOMER[CCO-PM-BAC-NEG]": 1, "PHOSPHO-RCSB[CCO-CYTOSOL]": 1} "L2R" [] @@ -3289,6 +3278,10 @@ "RXN0-7200-IMP//IMP.9." {"IMP[CCO-PERI-BAC]": -1, "IMP[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7200-ITP//ITP.9." {"ITP[CCO-PERI-BAC]": -1, "ITP[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7200-L-DI-GMP//L-DI-GMP.19." {"L-DI-GMP[CCO-PERI-BAC]": -1, "L-DI-GMP[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] +"RXN0-7200-NAD//NAD.9." {"NAD[CCO-PERI-BAC]": -1, "NAD[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] +"RXN0-7200-NADH//NADH.11." {"NADH[CCO-PERI-BAC]": -1, "NADH[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] +"RXN0-7200-NADP//NADP.11." {"NADP[CCO-PERI-BAC]": -1, "NADP[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] +"RXN0-7200-NADPH//NADPH.13." {"NADPH[CCO-PERI-BAC]": -1, "NADPH[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7200-NICOTINAMIDE_NUCLEOTIDE//NICOTINAMIDE_NUCLEOTIDE.49." {"NICOTINAMIDE_NUCLEOTIDE[CCO-PERI-BAC]": -1, "NICOTINAMIDE_NUCLEOTIDE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7200-NMNH//NMNH.11." {"NMNH[CCO-PERI-BAC]": -1, "NMNH[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7200-OH-MYRISTOYL//OH-MYRISTOYL.27." {"OH-MYRISTOYL[CCO-PERI-BAC]": -1, "OH-MYRISTOYL[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] @@ -3482,6 +3475,7 @@ "RXN0-7206-CINNAMALDEHYDE//CINNAMALDEHYDE.31." {"CINNAMALDEHYDE[CCO-PERI-BAC]": -1, "CINNAMALDEHYDE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CIS-12-DIHYDRO-3-ETHYLCATECHOL//CIS-12-DIHYDRO-3-ETHYLCATECHOL.63." {"CIS-12-DIHYDRO-3-ETHYLCATECHOL[CCO-PERI-BAC]": -1, "CIS-12-DIHYDRO-3-ETHYLCATECHOL[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CMP//CMP.9." {"CMP[CCO-PERI-BAC]": -1, "CMP[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] +"RXN0-7206-COB-I-ALAMIN//COB-I-ALAMIN.27." {"COB-I-ALAMIN[CCO-PERI-BAC]": -1, "COB-I-ALAMIN[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-COBINAMIDE//COBINAMIDE.23." {"COBINAMIDE[CCO-PERI-BAC]": -1, "COBINAMIDE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-COPROPORPHYRIN_III//COPROPORPHYRIN_III.39." {"COPROPORPHYRIN_III[CCO-PERI-BAC]": -1, "COPROPORPHYRIN_III[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-10427//CPD-10427.21." {"CPD-10427[CCO-PERI-BAC]": -1, "CPD-10427[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] @@ -3567,6 +3561,7 @@ "RXN0-7206-CPD-26593//CPD-26593.21." {"CPD-26593[CCO-PERI-BAC]": -1, "CPD-26593[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-26685//CPD-26685.21." {"CPD-26685[CCO-PERI-BAC]": -1, "CPD-26685[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-26686//CPD-26686.21." {"CPD-26686[CCO-PERI-BAC]": -1, "CPD-26686[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] +"RXN0-7206-CPD-27111//CPD-27111.21." {"CPD-27111[CCO-PERI-BAC]": -1, "CPD-27111[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-315//CPD-315.17." {"CPD-315[CCO-PERI-BAC]": -1, "CPD-315[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-316//CPD-316.17." {"CPD-316[CCO-PERI-BAC]": -1, "CPD-316[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-CPD-3710//CPD-3710.19." {"CPD-3710[CCO-PERI-BAC]": -1, "CPD-3710[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] @@ -3687,6 +3682,7 @@ "RXN0-7206-DIHYDRONEOPTERIN-P3//DIHYDRONEOPTERIN-P3.41." {"DIHYDRONEOPTERIN-P3[CCO-PERI-BAC]": -1, "DIHYDRONEOPTERIN-P3[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-DIHYDROPTERIN-CH2OH-PP//DIHYDROPTERIN-CH2OH-PP.47." {"DIHYDROPTERIN-CH2OH-PP[CCO-PERI-BAC]": -1, "DIHYDROPTERIN-CH2OH-PP[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-DIHYDROSIROHYDROCHLORIN//DIHYDROSIROHYDROCHLORIN.49." {"DIHYDROSIROHYDROCHLORIN[CCO-PERI-BAC]": -1, "DIHYDROSIROHYDROCHLORIN[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] +"RXN0-7206-DIHYDROXYNAPHTHOATE//DIHYDROXYNAPHTHOATE.41." {"DIHYDROXYNAPHTHOATE[CCO-PERI-BAC]": -1, "DIHYDROXYNAPHTHOATE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-DIMETHYL-D-RIBITYL-LUMAZINE//DIMETHYL-D-RIBITYL-LUMAZINE.57." {"DIMETHYL-D-RIBITYL-LUMAZINE[CCO-PERI-BAC]": -1, "DIMETHYL-D-RIBITYL-LUMAZINE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-DIMP//DIMP.11." {"DIMP[CCO-PERI-BAC]": -1, "DIMP[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7206-DITP//DITP.11." {"DITP[CCO-PERI-BAC]": -1, "DITP[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] @@ -4208,6 +4204,7 @@ "RXN0-7210-CPD-24487//CPD-24487.21." {"CPD-24487[CCO-PERI-BAC]": -1, "CPD-24487[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7210-CPD-24488//CPD-24488.21." {"CPD-24488[CCO-PERI-BAC]": -1, "CPD-24488[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7210-CPD-24804//CPD-24804.21." {"CPD-24804[CCO-PERI-BAC]": -1, "CPD-24804[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] +"RXN0-7210-CPD-27111//CPD-27111.21." {"CPD-27111[CCO-PERI-BAC]": -1, "CPD-27111[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7210-CPD-3565//CPD-3565.19." {"CPD-3565[CCO-PERI-BAC]": -1, "CPD-3565[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7210-CPD-3570//CPD-3570.19." {"CPD-3570[CCO-PERI-BAC]": -1, "CPD-3570[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7210-CPD-3611//CPD-3611.19." {"CPD-3611[CCO-PERI-BAC]": -1, "CPD-3611[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] @@ -4258,6 +4255,7 @@ "RXN0-7210-CPD0-2662//CPD0-2662.21." {"CPD0-2662[CCO-PERI-BAC]": -1, "CPD0-2662[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7210-CPD0-2663//CPD0-2663.21." {"CPD0-2663[CCO-PERI-BAC]": -1, "CPD0-2663[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7210-CPD0-2667//CPD0-2667.21." {"CPD0-2667[CCO-PERI-BAC]": -1, "CPD0-2667[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] +"RXN0-7210-CPD0-2717//CPD0-2717.21." {"CPD0-2717[CCO-PERI-BAC]": -1, "CPD0-2717[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7210-CPD0-929//CPD0-929.19." {"CPD0-929[CCO-PERI-BAC]": -1, "CPD0-929[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7210-CPD0-930//CPD0-930.19." {"CPD0-930[CCO-PERI-BAC]": -1, "CPD0-930[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7210-CPD0-932//CPD0-932.19." {"CPD0-932[CCO-PERI-BAC]": -1, "CPD0-932[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] @@ -4451,6 +4449,7 @@ "RXN0-7244-CPD-20900//CPD-20900.21." {"CPD-20900[CCO-PERI-BAC]": -1, "CPD-20900[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7244-CPD-20969//CPD-20969.21." {"CPD-20969[CCO-PERI-BAC]": -1, "CPD-20969[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7244-CPD-21342//CPD-21342.21." {"CPD-21342[CCO-PERI-BAC]": -1, "CPD-21342[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] +"RXN0-7244-CPD-259//CPD-259.17." {"CPD-259[CCO-PERI-BAC]": -1, "CPD-259[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7244-CPD-313//CPD-313.17." {"CPD-313[CCO-PERI-BAC]": -1, "CPD-313[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7244-CPD-3462//CPD-3462.19." {"CPD-3462[CCO-PERI-BAC]": -1, "CPD-3462[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] "RXN0-7244-CPD-3604//CPD-3604.19." {"CPD-3604[CCO-PERI-BAC]": -1, "CPD-3604[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7533", "CPLX0-7534"] @@ -4720,7 +4719,7 @@ "RXN0-7347" {"MALTOSE[CCO-CYTOSOL]": -2, "Glucopyranose[CCO-CYTOSOL]": 1, "MALTOTRIOSE[CCO-CYTOSOL]": 1} "BOTH" ["AMYLOMALT-MONOMER"] "RXN0-7347-MALTOSE//ALPHA-GLUCOSE/MALTOTRIOSE.35." {"MALTOSE[CCO-CYTOSOL]": -2, "ALPHA-GLUCOSE[CCO-CYTOSOL]": 1, "MALTOTRIOSE[CCO-CYTOSOL]": 1} "BOTH" ["AMYLOMALT-MONOMER"] "RXN0-7347-MALTOSE//GLC/MALTOTRIOSE.25." {"MALTOSE[CCO-CYTOSOL]": -2, "GLC[CCO-CYTOSOL]": 1, "MALTOTRIOSE[CCO-CYTOSOL]": 1} "BOTH" ["AMYLOMALT-MONOMER"] -"RXN0-7348" {"PHOSPHO-OMPR[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "OMPR-MONOMER[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ENVZ-CPLX"] +"RXN0-7348" {"PHOSPHO-OMPR[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPLX0-8285[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" [] "RXN0-7349" {"tRNA-uridine34[CCO-CYTOSOL]": -2, "OXYGEN-MOLECULE[CCO-CYTOSOL]": -1, "5-HYDROXYU34-TRNA[CCO-CYTOSOL]": 2} "L2R" ["EG11116-MONOMER"] "RXN0-7352" {"GMP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GUANINE[CCO-CYTOSOL]": 1, "RIBOSE-5P[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8262"] "RXN0-7352-GMP/WATER//GUANINE/CPD-15318.29." {"GMP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GUANINE[CCO-CYTOSOL]": 1, "CPD-15318[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8262"] @@ -4806,6 +4805,7 @@ "RXN0-7453-an-oxidized-SoxR-protein/NADH//a-reduced-SoxR-protein/NAD/PROTON.65." {"an-oxidized-SoxR-protein[CCO-CYTOSOL]": -2, "NADH[CCO-CYTOSOL]": -1, "a-reduced-SoxR-protein[CCO-CYTOSOL]": 2, "NAD[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-10853"] "RXN0-7453-an-oxidized-SoxR-protein/NADPH//a-reduced-SoxR-protein/NADP/PROTON.67." {"an-oxidized-SoxR-protein[CCO-CYTOSOL]": -2, "NADPH[CCO-CYTOSOL]": -1, "a-reduced-SoxR-protein[CCO-CYTOSOL]": 2, "NADP[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-10853"] "RXN0-7454" {"CcmE-Protein-Heme[CCI-PERI-BAC-GN]": -1, "Donor-H1[CCI-PERI-BAC-GN]": -1, "CcmE-Protein-Heme-Ox[CCI-PERI-BAC-GN]": 1, "Acceptor[CCI-PERI-BAC-GN]": 1, "PROTON[CCI-PERI-BAC-GN]": 1} "L2R" ["EG12054-MONOMER"] +"RXN0-7457" {"PD01352[CCO-CYTOSOL]": -1, "ACETYL-P[CCO-CYTOSOL]": -1, "MONOMER0-4582[CCO-CYTOSOL]": 1} "BOTH" [] "RXN0-746" {"FORMATE[CCO-CYTOSOL]": -1, "GTP[CCO-CYTOSOL]": -1, "PROTON[CCO-CYTOSOL]": -1, "DGTP[CCO-CYTOSOL]": 1, "CARBON-DIOXIDE[CCO-CYTOSOL]": 1, "WATER[CCO-CYTOSOL]": 1} "L2R" ["RIBONUCLEOSIDE-TRIP-REDUCT-CPLX"] "RXN0-747" {"DADP[CCO-CYTOSOL]": -1, "Oxidized-NrdH-Proteins[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "ADP[CCO-CYTOSOL]": 1, "Reduced-NrdH-Proteins[CCO-CYTOSOL]": 1} "R2L" ["RIBONUCLEOSIDE-DIP-REDUCTII-CPLX"] "RXN0-748" {"DGDP[CCO-CYTOSOL]": -1, "Oxidized-NrdH-Proteins[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "GDP[CCO-CYTOSOL]": 1, "Reduced-NrdH-Proteins[CCO-CYTOSOL]": 1} "R2L" ["RIBONUCLEOSIDE-DIP-REDUCTII-CPLX"] @@ -5197,6 +5197,7 @@ "TRANS-RXN-262" {"ASN[CCO-PERI-BAC]": -1, "PROTON[CCO-PERI-BAC]": -1, "ASN[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ANSP-MONOMER"] "TRANS-RXN-267" {"cystine[CCO-CYTOSOL]": -1, "cystine[CCO-PERI-BAC]": 1} "L2R" ["EG11902-MONOMER", "EG12713-MONOMER"] "TRANS-RXN-267-CPD0-1564//CPD0-1564.21." {"CPD0-1564[CCO-CYTOSOL]": -1, "CPD0-1564[CCO-PERI-BAC]": 1} "L2R" ["EG11902-MONOMER", "EG12713-MONOMER"] +"TRANS-RXN-267-L-CYSTINE//L-CYSTINE.21." {"L-CYSTINE[CCO-CYTOSOL]": -1, "L-CYSTINE[CCO-PERI-BAC]": 1} "L2R" ["EG11902-MONOMER", "EG12713-MONOMER"] "TRANS-RXN-27" {"SHIKIMATE[CCO-PERI-BAC]": -1, "PROTON[CCO-PERI-BAC]": -1, "SHIKIMATE[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["SHIA-MONOMER"] "TRANS-RXN-272" {"FAD[CCO-CYTOSOL]": -1, "FAD[CCO-PERI-BAC]": 1} "L2R" ["YEEO-MONOMER"] "TRANS-RXN-273" {"CPD-14545[CCO-CYTOSOL]": -1, "CPD-14545[CCO-PERI-BAC]": 1} "L2R" ["B1791-MONOMER"] @@ -5604,6 +5605,7 @@ "TRANS-RXN0-265-CPD0-1617//CPD0-1617.21." {"CPD0-1617[CCO-CYTOSOL]": -1, "CPD0-1617[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] "TRANS-RXN0-265-CPD0-1627//CPD0-1627.21." {"CPD0-1627[CCO-CYTOSOL]": -1, "CPD0-1627[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] "TRANS-RXN0-265-CPD0-1636//CPD0-1636.21." {"CPD0-1636[CCO-CYTOSOL]": -1, "CPD0-1636[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] +"TRANS-RXN0-265-CPD0-1941//CPD0-1941.21." {"CPD0-1941[CCO-CYTOSOL]": -1, "CPD0-1941[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] "TRANS-RXN0-265-CPD0-1942//CPD0-1942.21." {"CPD0-1942[CCO-CYTOSOL]": -1, "CPD0-1942[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] "TRANS-RXN0-265-CPD0-1952//CPD0-1952.21." {"CPD0-1952[CCO-CYTOSOL]": -1, "CPD0-1952[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] "TRANS-RXN0-265-CPD0-2015//CPD0-2015.21." {"CPD0-2015[CCO-CYTOSOL]": -1, "CPD0-2015[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] @@ -5648,6 +5650,7 @@ "TRANS-RXN0-265-L-BETA-ASPARTYL-P//L-BETA-ASPARTYL-P.37." {"L-BETA-ASPARTYL-P[CCO-CYTOSOL]": -1, "L-BETA-ASPARTYL-P[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] "TRANS-RXN0-265-L-CITRULLINE//L-CITRULLINE.27." {"L-CITRULLINE[CCO-CYTOSOL]": -1, "L-CITRULLINE[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] "TRANS-RXN0-265-L-CYSTATHIONINE//L-CYSTATHIONINE.33." {"L-CYSTATHIONINE[CCO-CYTOSOL]": -1, "L-CYSTATHIONINE[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] +"TRANS-RXN0-265-L-CYSTINE//L-CYSTINE.21." {"L-CYSTINE[CCO-CYTOSOL]": -1, "L-CYSTINE[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] "TRANS-RXN0-265-L-DIHYDROXY-PHENYLALANINE//L-DIHYDROXY-PHENYLALANINE.53." {"L-DIHYDROXY-PHENYLALANINE[CCO-CYTOSOL]": -1, "L-DIHYDROXY-PHENYLALANINE[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] "TRANS-RXN0-265-L-GLUTAMATE_GAMMA-SEMIALDEHYDE//L-GLUTAMATE_GAMMA-SEMIALDEHYDE.63." {"L-GLUTAMATE_GAMMA-SEMIALDEHYDE[CCO-CYTOSOL]": -1, "L-GLUTAMATE_GAMMA-SEMIALDEHYDE[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] "TRANS-RXN0-265-L-ORNITHINE//L-ORNITHINE.25." {"L-ORNITHINE[CCO-CYTOSOL]": -1, "L-ORNITHINE[CCO-PERI-BAC]": 1} "L2R" ["EG12713-MONOMER"] @@ -5845,7 +5848,6 @@ "TRANS-RXN0-503" {"MALTOTRIOSE[CCO-PERI-BAC]": -1, "ATP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "ADP[CCO-CYTOSOL]": 1, "MALTOTRIOSE[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ABC-16-CPLX"] "TRANS-RXN0-504" {"MALTOTETRAOSE[CCO-PERI-BAC]": -1, "ATP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "ADP[CCO-CYTOSOL]": 1, "MALTOTETRAOSE[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["ABC-16-CPLX"] "TRANS-RXN0-505" {"PROPIONATE[CCO-PERI-BAC]": -1, "PROPIONATE[CCO-CYTOSOL]": 1} "L2R" ["PUTP-MONOMER"] -"TRANS-RXN0-507" {"L-CYSTINE[CCO-PM-BAC-NEG]": -1, "L-CYSTINE[CCO-PM-BAC-NEG]": 1} "L2R" [] "TRANS-RXN0-508" {"CPD-3740[CCO-PERI-BAC]": -1, "ATP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD-3740[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["CPLX0-8152"] "TRANS-RXN0-509" {"HYPOTAURINE[CCO-PERI-BAC]": -1, "HYPOTAURINE[CCO-CYTOSOL]": 1} "L2R" [] "TRANS-RXN0-510-CPD0-2015/ATP/WATER//CPD0-2015/ADP/Pi/PROTON.45." {"CPD0-2015[CCO-PERI-BAC]": -1, "ATP[CCO-CYTOSOL]": -1, "WATER[CCO-CYTOSOL]": -1, "CPD0-2015[CCO-CYTOSOL]": 1, "ADP[CCO-CYTOSOL]": 1, "Pi[CCO-CYTOSOL]": 1, "PROTON[CCO-CYTOSOL]": 1} "L2R" ["METNIQ-METHIONINE-ABC-CPLX"] @@ -6116,11 +6118,13 @@ "TRANS-RXN0-604-CPD-239//CPD-239.17." {"CPD-239[CCO-PERI-BAC]": -1, "CPD-239[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-604-CPD-24871//CPD-24871.21." {"CPD-24871[CCO-PERI-BAC]": -1, "CPD-24871[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-604-CPD-26676//CPD-26676.21." {"CPD-26676[CCO-PERI-BAC]": -1, "CPD-26676[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] +"TRANS-RXN0-604-CPD-296//CPD-296.17." {"CPD-296[CCO-PERI-BAC]": -1, "CPD-296[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-604-CPD-3740//CPD-3740.19." {"CPD-3740[CCO-PERI-BAC]": -1, "CPD-3740[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-604-CPD-3744//CPD-3744.19." {"CPD-3744[CCO-PERI-BAC]": -1, "CPD-3744[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-604-CPD-3745//CPD-3745.19." {"CPD-3745[CCO-PERI-BAC]": -1, "CPD-3745[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-604-CPD-3746//CPD-3746.19." {"CPD-3746[CCO-PERI-BAC]": -1, "CPD-3746[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-604-CPD-397//CPD-397.17." {"CPD-397[CCO-PERI-BAC]": -1, "CPD-397[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] +"TRANS-RXN0-604-CPD-479//CPD-479.17." {"CPD-479[CCO-PERI-BAC]": -1, "CPD-479[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-604-CPD-548//CPD-548.17." {"CPD-548[CCO-PERI-BAC]": -1, "CPD-548[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-604-CPD-7038//CPD-7038.19." {"CPD-7038[CCO-PERI-BAC]": -1, "CPD-7038[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-604-CPD-722//CPD-722.17." {"CPD-722[CCO-PERI-BAC]": -1, "CPD-722[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] @@ -6161,6 +6165,7 @@ "TRANS-RXN0-604-HSCN//HSCN.11." {"HSCN[CCO-PERI-BAC]": -1, "HSCN[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-604-L-CYSTEATE//L-CYSTEATE.23." {"L-CYSTEATE[CCO-PERI-BAC]": -1, "L-CYSTEATE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-604-L-HOMOCYSTEATE//L-HOMOCYSTEATE.31." {"L-HOMOCYSTEATE[CCO-PERI-BAC]": -1, "L-HOMOCYSTEATE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] +"TRANS-RXN0-604-LIPOIC-ACID//LIPOIC-ACID.25." {"LIPOIC-ACID[CCO-PERI-BAC]": -1, "LIPOIC-ACID[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-604-OXIDIZED-GLUTATHIONE//OXIDIZED-GLUTATHIONE.43." {"OXIDIZED-GLUTATHIONE[CCO-PERI-BAC]": -1, "OXIDIZED-GLUTATHIONE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-604-S-2-AMINOETHYL-L-CYSTEINE//S-2-AMINOETHYL-L-CYSTEINE.53." {"S-2-AMINOETHYL-L-CYSTEINE[CCO-PERI-BAC]": -1, "S-2-AMINOETHYL-L-CYSTEINE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-604-S-24-DINITROPHENYLGLUTATHIONE//S-24-DINITROPHENYLGLUTATHIONE.61." {"S-24-DINITROPHENYLGLUTATHIONE[CCO-PERI-BAC]": -1, "S-24-DINITROPHENYLGLUTATHIONE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] @@ -6409,6 +6414,7 @@ "TRANS-RXN0-612-CPD0-1617//CPD0-1617.21." {"CPD0-1617[CCO-PERI-BAC]": -1, "CPD0-1617[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-612-CPD0-1627//CPD0-1627.21." {"CPD0-1627[CCO-PERI-BAC]": -1, "CPD0-1627[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-612-CPD0-1636//CPD0-1636.21." {"CPD0-1636[CCO-PERI-BAC]": -1, "CPD0-1636[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] +"TRANS-RXN0-612-CPD0-1941//CPD0-1941.21." {"CPD0-1941[CCO-PERI-BAC]": -1, "CPD0-1941[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-612-CPD0-1942//CPD0-1942.21." {"CPD0-1942[CCO-PERI-BAC]": -1, "CPD0-1942[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-612-CPD0-1952//CPD0-1952.21." {"CPD0-1952[CCO-PERI-BAC]": -1, "CPD0-1952[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-612-CPD0-2015//CPD0-2015.21." {"CPD0-2015[CCO-PERI-BAC]": -1, "CPD0-2015[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] @@ -6453,6 +6459,7 @@ "TRANS-RXN0-612-L-BETA-ASPARTYL-P//L-BETA-ASPARTYL-P.37." {"L-BETA-ASPARTYL-P[CCO-PERI-BAC]": -1, "L-BETA-ASPARTYL-P[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-612-L-CITRULLINE//L-CITRULLINE.27." {"L-CITRULLINE[CCO-PERI-BAC]": -1, "L-CITRULLINE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-612-L-CYSTATHIONINE//L-CYSTATHIONINE.33." {"L-CYSTATHIONINE[CCO-PERI-BAC]": -1, "L-CYSTATHIONINE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] +"TRANS-RXN0-612-L-CYSTINE//L-CYSTINE.21." {"L-CYSTINE[CCO-PERI-BAC]": -1, "L-CYSTINE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-612-L-DIHYDROXY-PHENYLALANINE//L-DIHYDROXY-PHENYLALANINE.53." {"L-DIHYDROXY-PHENYLALANINE[CCO-PERI-BAC]": -1, "L-DIHYDROXY-PHENYLALANINE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-612-L-GLUTAMATE_GAMMA-SEMIALDEHYDE//L-GLUTAMATE_GAMMA-SEMIALDEHYDE.63." {"L-GLUTAMATE_GAMMA-SEMIALDEHYDE[CCO-PERI-BAC]": -1, "L-GLUTAMATE_GAMMA-SEMIALDEHYDE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] "TRANS-RXN0-612-L-ORNITHINE//L-ORNITHINE.25." {"L-ORNITHINE[CCO-PERI-BAC]": -1, "L-ORNITHINE[CCO-EXTRACELLULAR]": 1} "BOTH" ["CPLX0-7530", "CPLX0-7534", "CPLX0-7533"] diff --git a/reconstruction/ecoli/flat/metabolites.tsv b/reconstruction/ecoli/flat/metabolites.tsv index 6c88cec8e..4c06e1dfc 100644 --- a/reconstruction/ecoli/flat/metabolites.tsv +++ b/reconstruction/ecoli/flat/metabolites.tsv @@ -1,7 +1,7 @@ # Organism: Escherichia coli K-12 substr. MG1655 # Database: EcoCyc -# Version: 28.1 -# Date and time generated: March 7, 2024, 13:56:19 +# Version: 28.5 +# Date and time generated: July 19, 2024, 9:41:18 "id" "common_name" "synonyms" "chemical_formula" "mw" "molecular_charge" "_smiles" "--TRANS-ACENAPHTHENE-12-DIOL" "(+/-)-trans-acenaphthene-1,2-diol" ["trans-1,2-acenaphthylene glycol"] "C12H10O2" 186.21 0 "c2(cc1(cccc3(c1c(c2)[C@@H]([C@H]3O)O)))" "1-2-Beta-D-Glucans" "a 1,2-β-D-glucan" [] null null 0 "C(O)[C@H]7(O[C@@H](O)[C@H](O[C@@H]6(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](O[C@H]5([C@H](O[C@@H]4(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](O[C@H]3([C@H](O[C@@H]2(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](O[C@H]1([C@H](O[R])[C@@H](O)[C@H](O)[C@@H](CO)O1))2))[C@@H](O)[C@H](O)[C@@H](CO)O3))4))[C@@H](O)[C@H](O)[C@@H](CO)O5))6))[C@@H](O)[C@H](O)7)" @@ -25,6 +25,7 @@ "1-6-anhydro-MurNAc-tetrapeptide" "1,6-anhydro-MurNAc-tetrapeptide" ["1,6-anhydrous-N-Acetylmuramoyl-tetrapeptide"] null null -1 "C[C@H](NC([C@H](O[C@@H]1([C@@H](NC(=O)C)C2(OCC([C@@H](O)1)O2)))C)=O)C(N[C@H](CCC(=O)N[C@@H](CCCC([R])[NH3+])C(N[C@H](C)C(=O)[O-])=O)C(=O)[O-])=O" "1-6-beta-D-Glucan" "a 1,6-β-D-glucan" ["(1,6-β-D-glucosyl)(n)", "(1,6-β-D-glucosyl)(n+1)", "(1,6-β-D-glucosyl)(n-1)"] null null 0 "C(O[R1])[C@H]2(O[C@@H](OC[C@H]1(O[C@@H](O[R2])[C@H](O)[C@@H](O)[C@H](O)1))[C@H](O)[C@@H](O)[C@H](O)2)" "1-6-Galactofuran" "a galactofuran ending with a galactofuranosyl (1->6) linkage" ["a β-D-Galf-(1->6)-β-(D-Galf)n-Rha-GlcNAc-P-P-C50"] "C82H135NO31P2" 1692.904 -2 "CC(C)=CCCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(=O)([O-])OP(=O)([O-])O[C@@H]5(O[C@H](CO)[C@@H](O[C@@H]4(O[C@@H](C)[C@H](O[C@H]3([C@H](O)[C@@H](O)C([C@H](O[C@H]2([C@H](O)[C@@H](O)C([C@H](O)CO[C@H]1([C@H](O)[C@@H](O)C([C@H](O)CO)O1))O2))CO)O3))[C@@H](O)[C@@H](O)4))[C@H](O)[C@@H](NC(C)=O)5)" +"1-6-Mannan" "an α-1,6-D-mannan" ["an α-(1,6)-D-mannan"] null null 0 "C(O[R1])[C@H]6(O[C@H](OC[C@H]5(O[C@H](OC[C@H]4(O[C@H](OC[C@H]3(O[C@H](OC[C@H]2(O[C@H](OC[C@H]1(O[C@H](O[R2])[C@@H](O)[C@@H](O)[C@@H]1O))[C@@H](O)[C@@H](O)[C@@H]2O))[C@@H](O)[C@@H](O)[C@@H]3O))[C@@H](O)[C@@H](O)[C@@H]4O))[C@@H](O)[C@@H](O)[C@@H]5O))[C@@H](O)[C@@H](O)[C@@H]6O)" "1-ACYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOC" "a 1-acyl-2-linoleoyl-sn-glycero-3-phosphocholine" [] null null 0 "CCCCC\C=C/C\C=C/CCCCCCCC(=O)O[C@H](COC(=O)[R])COP(=O)([O-])OCC[N+](C)(C)C" "1-ACYL-2-OLEOYL-SN-GLYCERO-3-PHOSPHOCHOL" "a 1-acyl-2-oleoyl-sn-glycero-3-phosphocholine" [] null null 0 "CCCCCCCC\C=C/CCCCCCCC(=O)O[C@H](COC(=O)[R])COP([O-])(=O)OCC[N+](C)(C)C" "1-acyl-2-palmitoleoyl-glycerolipids" "a 1-acyl-2-palmitoleoyl-[glycerolipid]" [] null null 0 "CCCCCC\C=C/CCCCCCCC(=O)O[C@@H](CO[R2])COC(=O)[R1]" @@ -74,7 +75,7 @@ "1-PHOSPHATIDYL-1D-MYO-INOSITOL-35-BISPH" "1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate" ["PtdIns(3,5)P2"] null null -5 "C(OC(=O)[R1])[C@H](COP(=O)([O-])O[C@@H]1([C@H](O)[C@H](OP([O-])([O-])=O)[C@@H](O)[C@H](OP(=O)([O-])[O-])[C@@H](O)1))OC(=O)[R2]" "1-PHOSPHATIDYL-1D-MYO-INOSITOL-5-PHOSPHA" "a 1-phosphatidyl-1D-myo-inositol 5-phosphate" ["PtdIns5P", "2,3-bis(alkanoyloxy)propyl (1R,2R,3R,4R,5S,6R)-2,3,4,6-tetrahydroxy-5-(phosphonatooxy)cyclohexyl phosphate", "1-phosphatidyl-1D-myo-inositol 5-phosphate trianion", "PI(5)P"] null null -3 "C(OC(=O)[R1])[C@H](COP(=O)([O-])O[C@@H]1([C@H](O)[C@H](O)[C@@H](O)[C@H](OP(=O)([O-])[O-])[C@@H](O)1))OC(=O)[R2]" "1-Phosphatidyl-2-O-D-Ala-Glycerol" "2-O-D-alanyl-1-O-phosphatidylglycerol" ["PG-D-Ala"] null null 0 "C[C@@H]([NH3+])C(=O)O[C@@H](CO)COP(=O)([O-])OC[C@@H](COC(=O)[R1])OC(=O)[R2]" -"1-PHOSPHATIDYL-MYO-INOSITOL-2-MANNOSE" "a 2-O-(α-D-mannosyl)-1-phosphatidyl-1D-myo-inositol" ["PIM1"] null null -1 "C([C@H]2(O[C@H](O[C@@H]1([C@H](O)[C@@H](O)[C@H](O)[C@@H](O)[C@H](OP(=O)([O-])OC[C@@H](COC(=O)[R1])OC(=O)[R2])1))[C@H]([C@H]([C@@H]2O)O)O))O" +"1-PHOSPHATIDYL-MYO-INOSITOL-2-MANNOSE" "a 2-O-(α-D-mannosyl)-1-phosphatidyl-1D-myo-inositol" ["PIM1"] null null -1 "C(O)[C@H]2(O[C@H](O[C@@H]1([C@H](O)[C@@H](O)[C@H](O)[C@@H](O)[C@H](OP(=O)([O-])OC[C@@H](COC(=O)[R1])OC(=O)[R2])1))[C@H]([C@H]([C@@H]2O)O)O)" "1-RADYL-2-ACYL-SN-GLYCERO-3-PHOSPHOLIPID" "a 1-organyl-2-lyso-sn-glycero-3-phospholipid" ["a 1-radyl-2-acyl-sn-glycero-3-phospholipid"] null null -1 "C(O[R1])[C@@H](O)COP(=O)([O-])O[R2]" "1-stearidonoyl-2-acyl-glycerolipids" "a 1-stearidonoyl 2-acyl-[glycerolipid]" [] null null 0 "CC\C=C/C\C=C/C\C=C/C\C=C/CCCCC(=O)OC[C@@H](OC([R1])=O)CO[R2]" "1-stearidonoyl-L-Phosphatidate" "a 1-stearidonoyl 2-acyl-sn-glycerol 3-phosphate" [] null null -2 "CC\C=C/C\C=C/C\C=C/C\C=C/CCCCC(=O)OC[C@@H](OC([R])=O)COP([O-])(=O)[O-]" @@ -227,22 +228,22 @@ "2-Methoxy-6-Polyprenyl-14-Benzoquinols" "a 2-methoxy-6-all-trans-polyprenyl-1,4-benzoquinol" [] null null 0 "CC(/C[R])=C\Cc1(c(c(OC)cc(O)c1)O)" "2-Methoxy-6-polyprenyl-phenols" "a 2-methoxy-6-(all-trans-polyprenyl)phenol" [] null null 0 "CC(/C[R])=C\Cc1(cccc(OC)c1O)" "2-METHYLMALEATE" "citraconate" ["2-methylmaleate", "citraconic acid", "methylmaleic acid"] "C5H4O4" 128.084 -2 "CC(\C(=O)[O-])=C\C([O-])=O" -"2-MT-N6-L-THR-carbamoyladenine37-tRNAs" "a 2-methylsulfanyl-N6-L-threonylcarbamoyladenine37 in tRNA" [] null null -3 "C[C@@H](O)[C@H](NC(Nc1(nc(SC)nc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3))))=O)C([O-])=O" +"2-MT-N6-L-THR-carbamoyladenine37-tRNAs" "a 2-methylsulfanyl-N6-L-threonylcarbamoyladenine37 in tRNA" [] null null -3 "C[C@@H](O)[C@H](NC(Nc1(nc(SC)nc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3))))=O)C([O-])=O" "2-N-linked-Glycan" "Man3(GlcNAc)3-[protein]" ["a {β-D-GlcNAc-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-β-D-GlcNAc}-N-Asn-[protein]", "0,2 N-linked glycan"] null null 0 "CC(N[C@H]6([C@H](NC(=O)C[C@H](N[a protein])C([a protein])=O)O[C@H](CO)[C@@H](O[C@H]5([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO)O))O[C@@H]4([C@@H](O[C@H]3([C@H](NC(=O)C)[C@H]([C@H](O)[C@@H](CO)O3)O))[C@@H](O)[C@@H]([C@H](O4)CO)O)))[C@@H](CO)O5)O))[C@H](O)6))=O" "2-NUCLEOTIDYLGENTAMICIN" "a 2-nucleotidylgentamicin" ["a 2''-nucleotidylgentamicin"] null null 1 "[C@@H]4(O[C@@H]3([C@@H]([NH3+])C[C@@H]([NH3+])[C@H](O[C@H]1(OC[C@@H]([R6])[C@H]([R5])[C@@H](O)1))[C@@H](OP(=O)([O-])OC[C@@H]2([C@@H](O)[C@@H]([R])[C@H]([a nucleobase])O2))3))(O[C@H](C[R4])[C@@H]([R3])[C@H]([R2])[C@@H]([R1])4)" "2-O-acetyl-Rhamnogalacturns" "a 2-O-acetylated rhamnogalacturonan I" [] null null 0 "C[C@H]4([C@H](O)[C@@H](O)[C@@H](O[C@H]3(O[C@@H]([C@H](O[C@@H]1(O[C@H]([C@H](O)[C@H]([C@H]1O[C@H]2(O[C@@H]([C@@H]([C@@H]([C@H]2OC(C)=O)O)O[R1])C(O)=O))O)C))[C@@H]([C@H]3OC(C)=O)O)C(=O)O))[C@@H](O4)O[R2])" "2-O-ALPHA-MANNOSYL-D-GLYCERATE" "2-O-(α-D-mannosyl)-D-glycerate" ["2-O-(α-D-mannopyranosyl)-D-glycerate", "mannosylglycerate"] "C9H15O9" 267.212 -1 "C(O)[C@H]1(O[C@H](O[C@H](CO)C(=O)[O-])[C@@H](O)[C@@H](O)[C@H](O)1)" "2-O-MeCytidine4-tRNAGLY-GCC" "a 2'-O-methylcytidine4 in tRNAGly (GCC)" [] null null -2 "CO[C@@H]2([C@H](OP(=O)(O[a tRNAGly])[O-])[C@@H](COP(=O)([O-])O[a tRNAGly])O[C@@H](n1(ccc(N)nc(=O)1))2)" -"2-O-MeGuan-34-tRNAs" "a 2'-O-methylguanosine34 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](OC)[C@H](OP(=O)(O[a tRNA])[O-])3)" -"2-o-methyladenosine-rRNAs" "a 2'-O-methyladenosine in rRNA" [] null null -2 "CO[C@@H]3([C@H](OP(=O)(O[rRNA])[O-])[C@@H](COP(=O)([O-])O[rRNA])O[C@@H](n1(c2(c(nc1)c(N)ncn2)))3)" -"2-O-Methylcytidine-32-tRNAs" "a 2'-O-methylcytidine32 in tRNA" [] null null -2 "CO[C@@H]2([C@H](OP(=O)(O[a tRNA])[O-])[C@@H](COP(=O)([O-])O[a tRNA])O[C@@H](n1(ccc(N)nc(=O)1))2)" -"2-O-Methylcytidine-34-tRNAs" "a 2'-O-methylcytidine34 in tRNA" [] null null -2 "CO[C@@H]2([C@H](OP(=O)(O[a tRNA])[O-])[C@@H](COP(=O)([O-])O[a tRNA])O[C@@H](n1(ccc(N)nc(=O)1))2)" -"2-O-methylcytidine-56-tRNAs" "a 2'-O-methylcytidine56 in tRNA" [] null null -2 "CO[C@@H]2([C@H](OP(=O)(O[a tRNA])[O-])[C@@H](COP(=O)([O-])O[a tRNA])O[C@@H](n1(ccc(N)nc(=O)1))2)" -"2-O-methylguanosine-2922-in-27S-pre-rRNA" "a 2-O-methylguanosine2922 in 27S pre-rRNA" [] null null -2 "CO[C@@H]3([C@H](OP(=O)(O[rRNA])[O-])[C@@H](COP(=O)([O-])O[rRNA])O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))3)" -"2-O-Methylguanosine18" "a 2'-O-methylguanosine18 in tRNA" [] null null -2 "CO[C@@H]3([C@H](OP(=O)(O[a tRNA])[O-])[C@@H](COP(=O)([O-])O[a tRNA])O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))3)" +"2-O-MeGuan-34-tRNAs" "a 2'-O-methylguanosine34 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](OC)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" +"2-o-methyladenosine-rRNAs" "a 2'-O-methyladenosine in rRNA" [] null null -2 "CO[C@@H]3([C@H](OP(=O)(O[a ribosomal RNA])[O-])[C@@H](COP(=O)([O-])O[a ribosomal RNA])O[C@@H](n1(c2(c(nc1)c(N)ncn2)))3)" +"2-O-Methylcytidine-32-tRNAs" "a 2'-O-methylcytidine32 in tRNA" [] null null -2 "CO[C@@H]2([C@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](COP(=O)([O-])O[a transfer RNA])O[C@@H](n1(ccc(N)nc(=O)1))2)" +"2-O-Methylcytidine-34-tRNAs" "a 2'-O-methylcytidine34 in tRNA" [] null null -2 "CO[C@@H]2([C@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](COP(=O)([O-])O[a transfer RNA])O[C@@H](n1(ccc(N)nc(=O)1))2)" +"2-O-methylcytidine-56-tRNAs" "a 2'-O-methylcytidine56 in tRNA" [] null null -2 "CO[C@@H]2([C@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](COP(=O)([O-])O[a transfer RNA])O[C@@H](n1(ccc(N)nc(=O)1))2)" +"2-O-methylguanosine-2922-in-27S-pre-rRNA" "a 2-O-methylguanosine2922 in 27S pre-rRNA" [] null null -2 "CO[C@@H]3([C@H](OP(=O)(O[a ribosomal RNA])[O-])[C@@H](COP(=O)([O-])O[a ribosomal RNA])O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))3)" +"2-O-Methylguanosine18" "a 2'-O-methylguanosine18 in tRNA" [] null null -2 "CO[C@@H]3([C@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](COP(=O)([O-])O[a transfer RNA])O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))3)" "2-O-Methyluridine-Containing-rRNAs" "a 2'-O-methyluridine in 21S rRNA" ["2'-O-methyluridine-containing rRNA"] null null -2 "CO[C@@H]2([C@H](OP(=O)(O[a 21S rRNA])[O-])[C@@H](COP(=O)([O-])O[a 21S rRNA])O[C@@H](n1(ccc(=O)[nH]c(=O)1))2)" "2-O-methyluridine2479-in-23S-rRNA" "a 2'-O-methyluridine2479 in 23S rRNA" [] null null -2 "CO[C@@H]2([C@H](OP(=O)(O[a 23S rRNA])[O-])[C@@H](COP(=O)([O-])O[a 23S rRNA])O[C@@H](n1(ccc(=O)[nH]c(=O)1))2)" -"2-O-Methyluridine32-tRNA" "a 2'-O-methyluridine32 in tRNA" [] null null -2 "CO[C@@H]2([C@H](OP(=O)(O[a tRNA])[O-])[C@@H](COP(=O)([O-])O[a tRNA])O[C@@H](n1(ccc(=O)[nH]c(=O)1))2)" +"2-O-Methyluridine32-tRNA" "a 2'-O-methyluridine32 in tRNA" [] null null -2 "CO[C@@H]2([C@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](COP(=O)([O-])O[a transfer RNA])O[C@@H](n1(ccc(=O)[nH]c(=O)1))2)" "2-O-Methyluridine44-tRNASer" "a 2'-O-methyluridine44 in tRNAser" [] null null -2 "CO[C@@H]2([C@H](OP(=O)(O[a tRNAser])[O-])[C@@H](COP(=O)([O-])O[a tRNAser])O[C@@H](n1(ccc(=O)[nH]c(=O)1))2)" "2-OCTAPRENYL-6-HYDROXYPHENOL" "3-(all-trans-octaprenyl)benzene-1,2-diol" ["2-octaprenyl-6-hydroxyphenol"] "C46H70O2" 655.058 0 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/Cc1(c(O)c(O)ccc1)" "2-OCTAPRENYL-6-METHOXYPHENOL" "2-methoxy-6-(all-trans-octaprenyl)phenol" ["2-methoxy-6-all-trans-octaprenylphenol", "2-octaprenyl-6-methoxyphenol"] "C47H72O2" 669.085 0 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/Cc1(c(O)c(OC)ccc1)" @@ -266,7 +267,7 @@ "2-PROTOCATECHUOYLPHLOROGLUCINOLCARBOXYLA" "2-protocatechuoylphloroglucinolcarboxylate" ["2-(3,4-dihydroxybenzoyloxy)-4,6-dihydroxybenzoate", "2-protocatechuoyl-phloroglucinol carboxylic acid"] "C14H9O8" 305.22 -1 "C(c1(c(cc(O)cc(O)1)OC(c2(ccc(c(c2)O)O))=O))([O-])=O" "2-Pyranones" "a 2-pyrone" ["a 2-oxo-2H-pyran", "a 2H-pyran-2-one", "an α-pyrone", "a pyran-2-one"] null null 0 null "2-Stearoyl-L-Phosphatidate" "a 1-acyl-2-stearoyl-sn-glycerol 3-phosphate" [] null null -2 "CCCCCCCCCCCCCCCCCC(=O)O[C@@H](COP(=O)([O-])[O-])COC(=O)[R]" -"2-Thiocytosine-32-In-tRNAs" "a 2-thiocytosine32 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](N1(C(/N=C(\C=C/1)/N)=S))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" +"2-Thiocytosine-32-In-tRNAs" "a 2-thiocytosine32 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](N1(C(/N=C(\C=C/1)/N)=S))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" "2-THIOURIDINE" "2-thiouridine" ["s2U"] "C9H12N2O5S" 260.264 0 "C(O)[C@@H]2([C@H]([C@H]([C@H](N1(\C=C/C(=O)NC1=S))O2)O)O)" "2-trans-4-cis-dienoyl-CoAs" "a (2E,4Z)-2,4-dienoyl-CoA" ["a 2-trans-4-cis-dienoyl-CoA"] null null -4 "C(\[R])=C\C=C\C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(=O)(OP(=O)(OC[C@@H]1([C@@H](OP([O-])(=O)[O-])[C@@H](O)[C@@H](O1)n3(c2(c(c(N)ncn2)nc3))))[O-])[O-]" "20-Glc-Glc-Protopanaxadiol-ginsenosides" "a protopanaxadiol-type ginsenoside with two glucosyl residues at position 20" [] null null 0 "CC(C)=CCC[C@](C)(O[C@H]2([C@H](O)[C@H]([C@H](O)[C@@H](CO[C@H]1([C@H](O)[C@@H](O)[C@H](O)[C@@H](CO)O1))O2)O))[C@@H]3(CC[C@@]4([C@@H]3[C@H](O)C[C@H]5([C@@]4(C)CC[C@H]6([C@]5(C)CC[C@@H](C(C)(C)6)O[R])))C)" @@ -280,7 +281,6 @@ "21S-rRNA-Uridines" "a uridine in 21S rRNA" ["21S rRNA uridine"] null null -2 "C(OP(=O)([O-])O[a 21S rRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a 21S rRNA])[O-])2)" "21S-rRNAs-Pseudouridines" "a 21S rRNA pseudouridine" ["a 21S rRNA containing pseudouridine", "a pseudouridine in 21S rRNA"] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a 21S rRNA])[C@@H](OP(=O)(O[a 21S rRNA])[O-])[C@@H](O)2))" "23-24-Dihydrocucurbitacins" "a 23,24-dihydrocucurbitacin" [] null null 0 "CC(=O)OC(C)(C)CCC([C@@](C)(C2([C@@H](C[C@@]3(C)(C4(C/C=C1([C@@H](C[C@@H](C(C(C)(C)1)=O)O)[C@](C(C[C@](C)23)=O)4[R]))))O))O)=O" -"23-cyclic-nucloetide-PO4" "2',3' -cyclic nucleotide phosphate" ["a 2',3' -cyclic nucleotide"] null null -1 "C([C@@H]1([C@@H]2([C@H]([C@H]([a nucleobase])O1)OP(O2)([O-])=O)))O" "23-Diaminopropanoate" "2,3-diaminopropanoate" ["2,3-diaminopropionate", "2,3-diaminopropionic acid", "2,3-diaminopropanoic acid", "3-aminoalanine zwitterion", "2-amino-3-ammoniopropanoate"] "C3H9N2O2" 105.116 1 "C([NH3+])C(C(=O)[O-])[NH3+]" "23-Didehydropyranoses" "a 2,3-didehydropyranose" [] "C6H10O6" 178.141 0 "C(O)C1(OC(\O)=C(C(O)C(O)1)/O)" "23-DIMERCAPTOPROPAN-1-OL" "2,3-bis(sulfanyl)propan-1-ol" ["2,3-mercaptopropanol", "dithioglycerine", "2,3-dimercaptopropanol", "2,3-dithiopropanol", "1,2-dithioglycerol", "dimercaprol"] "C3H8OS2" 124.216 0 "C(O)C(S)CS" @@ -374,7 +374,7 @@ "28S-rRNA-Adenines" "an adenine in 28S rRNA" ["28s rRNA adenine"] null null -2 "C(OP(=O)([O-])O[a 28S rRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a 28S rRNA])[O-])3)" "2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE" "2-C-methyl-D-erythritol-2,4-cyclodiphosphate" ["ME-2,4cPP"] "C5H10O9P2" 276.076 -2 "C[C@@]1(CO)(OP(=O)([O-])OP(=O)([O-])OC[C@@H](O)1)" "2K-4CH3-PENTANOATE" "4-methyl-2-oxopentanoate" ["2-keto-4-methyl-pentanoate", "2-oxoisocaproate", "2-oxo-4-methylpentanoate", "α-ketoisocaproate", "α-oxoisocaproate", "2-ketoisocaproate", "ketoleucine", "4-methyl-2-oxopentanoic acid", "2-ketoisocaproic acid"] "C6H9O3" 129.135 -1 "CC(C)CC(C([O-])=O)=O" -"2primeO-Methylcytosine-Containing-rRNAs" "a 2'-O-methylcytosine in rRNA" [] null null -2 "CO[C@@H]2([C@H](OP(=O)(O[rRNA])[O-])[C@@H](COP(=O)([O-])O[rRNA])O[C@@H](n1(ccc(N)nc(=O)1))2)" +"2primeO-Methylcytosine-Containing-rRNAs" "a 2'-O-methylcytosine in rRNA" [] null null -2 "CO[C@@H]2([C@H](OP(=O)(O[a ribosomal RNA])[O-])[C@@H](COP(=O)([O-])O[a ribosomal RNA])O[C@@H](n1(ccc(N)nc(=O)1))2)" "2primeO-MethylU-Containing-23SrRNAs" "a 2'-O-methyluridine in 23S rRNA" ["23S rRNA containing 2'-O-methyluridine"] null null -2 "CO[C@@H]2([C@H](OP(=O)(O[a 23S rRNA])[O-])[C@@H](COP(=O)([O-])O[a 23S rRNA])O[C@@H](n1(ccc(=O)[nH]c(=O)1))2)" "2R-2-Hydroxyl-Acyl-CoAs" "a (2R)-2-hydroxyacyl-CoA" [] null null -4 "C([R])C[C@@H](O)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(=O)(OP(=O)(OC[C@@H]1([C@@H](OP([O-])(=O)[O-])[C@@H](O)[C@@H](O1)n3(c2(c(c(N)ncn2)nc3))))[O-])[O-]" "2R-3R-Dihydroflavonols" "a (2R,3R)-dihydroflavonol" [] null null 0 "c1([R3])(c([R4])c([R5])c(c([R1])c([R2])1)[C@H]2(Oc3(c([R9])c([R8])c([R7])c([R6])c(C(=O)[C@H](O)2)3)))" @@ -533,8 +533,8 @@ "4S-limonene-1-2-epoxides" "a (4S)-1,2-epoxymenth-8-ene" ["a (4S)-limonene-1,2-epoxide"] "C10H16O" 152.236 0 "C=C([C@H]1(CCC2(C(C1)O2)(C)))C" "5-10-METHENYL-THF" "5,10-methenyltetrahydrofolate mono-L-glutamate" ["N5-N10-CH-THF mono-L-glutamate", "N5-N10-methenyltetrahydrofolate mono-L-glutamate", "CH-THF mono-L-glutamate", "5,10-methenyl-THF mono-L-glutamate", "anhydroleucovorin mono-L-glutamate", "methenyl-tetrahydrofolate mono-L-glutamate", "methenyl-THF mono-L-glutamate", "methenyl-H4F mono-L-glutamate", "5,10-methenyl-H4PteGlu1"] "C20H20N7O6" 454.421 -1 "C4(Nc1(nc(N)[nH]c(=O)c1[N+]3(\[C@H](CN(c2(ccc(cc2)C(=O)N[C@@H](CCC([O-])=O)C([O-])=O))/C=3)4)))" "5-10-METHENYL-THF-GLU-N" "a 5,10-methenyltetrahydrofolate" ["a 5,10-methenyl-THF"] null null 0 "C4(Nc1(nc(N)[nH]c(=O)c1[N+]3(\[C@H](CN(c2(ccc(cc2)C(=O)N[C@@H](CCC([R])=O)C([O-])=O))/C=3)4)))" -"5-2-me-oxy-2-oxo-et-ur-34-tRNA" "a 5-(2-methoxy-2-oxoethyl)uridine34 in tRNA" ["a tRNA containing 5-(2-methoxy-2-oxoethyl)uridine34", "an mcm5U34 in tRNA", "5-methoxycarbonylmethyl-uridine34 in tRNA"] null null -2 "COC(=O)Cc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"5-6-DihydroUracil-tRNAs" "a 5,6-dihydrouracil in tRNA" ["tRNA containing 5,6-dihydrouracil"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](N1(CCC(=O)NC(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" +"5-2-me-oxy-2-oxo-et-ur-34-tRNA" "a 5-(2-methoxy-2-oxoethyl)uridine34 in tRNA" ["a tRNA containing 5-(2-methoxy-2-oxoethyl)uridine34", "an mcm5U34 in tRNA", "5-methoxycarbonylmethyl-uridine34 in tRNA"] null null -2 "COC(=O)Cc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"5-6-DihydroUracil-tRNAs" "a 5,6-dihydrouracil in tRNA" ["tRNA containing 5,6-dihydrouracil"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](N1(CCC(=O)NC(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" "5-AMINO-5-DEOXY-D-GALACTOPYRANOSIDE" "5-amino-5-deoxy-D-galactopyranoside" [] "C6H14NO5" 180.18 1 "C([C@@H]1([C@@H]([C@@H]([C@H](C([NH2+]1)O)O)O)O))O" "5-AMINO-LEVULINATE" "5-aminolevulinate" ["5-amino-4-oxopentanoate", "5-amino-4-oxo-pentanoic acid", "5-amino-levulinic acid", "5-amino-4-oxopentanoic acid", "δ-aminolevulinate", "5-aminolevulinic acid", "5-amino-levulinate", "ALA", "δ-aminolevulinic acid"] "C5H9NO3" 131.131 0 "C(C(C[NH3+])=O)CC([O-])=O" "5-AMINOPENTANOATE" "5-aminopentanoate" ["5-aminovalerate", "δ-aminovalerate", "δ-amino-valeric acid", "5-aminopentanoic acid", "5-aminovaleric acid", "δ-aminovaleric acid", "δ-amino-N-valeric acid", "δ-amino-N-valerate"] "C5H11NO2" 117.147 0 "C(CC[NH3+])CC(=O)[O-]" @@ -557,27 +557,27 @@ "5-hydroxyoligo-deoxyribonucleotides" "a 5'-hydroxy-oligo-deoxyribonucleotide" [] null null -1 "[C@@H]1([a nucleobase])(O[C@H](CO)[C@@H](OP(=O)([O-])O[a deoxyribonucleic acid])C1)" "5-hydroxyoligo-ribonucleotides" "a 5'-hydroxy-oligo-ribonucleotide" [] null null 0 null "5-hydroxyoligonucleotides" "a 5'-hydroxyoligonucleotide" [] null null 0 null -"5-HYDROXYU34-TRNA" "a 5-hydroxyuridine34 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(cc(O)c(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" +"5-HYDROXYU34-TRNA" "a 5-hydroxyuridine34 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(cc(O)c(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" "5-IODOPENTAPHOSPHONATE" "5-iodopentaphosphonate" [] "C4H9O3PI" 262.992 -1 "C(P(O)([O-])=O)CCCI" "5-KETO-4-DEOXY-D-GLUCARATE" "5-dehydro-4-deoxy-D-glucarate" ["3-deoxy-2-keto-L-threo-hexarate", "5-keto-4-deoxy-D-glucarate", "KDG", "3-deoxy-L-threo-hex-2-ulosarate", "GLR", "KGR", "5-KDG", "3-deoxy-(L)-threo-2-hexulosarate", "(2R,3S)-2,3-dihydroxy-5-oxohexanedioate", "2-keto-L-threo-4,5-dihydroxyadipate"] "C6H6O7" 190.109 -2 "C(C(C[C@@H]([C@H](C([O-])=O)O)O)=O)([O-])=O" "5-L-GLUTAMYL-AMINO-ACID" "an α-(5-L-glutamyl)-amino acid" ["an α-(γ-L-glutamyl)-amino acid"] null null -1 "C(CC(=O)NC([R])C(=O)[O-])[C@H]([NH3+])C(=O)[O-]" "5-L-GLUTAMYL-L-AMINO-ACID" "an α-(γ-L-glutamyl)-L-amino acid" ["a 5-L-glutamyl-L-amino acid"] null null -1 "[C@H]([R])(C([O-])=O)NC(=O)CC[C@H]([NH3+])C([O-])=O" "5-L-GLUTAMYL-PEPTIDE" "a 5-L-glutamyl-[peptide]" ["a γ-L-glutamyl-[peptide]"] null null 0 "C(NC(CC[C@H]([NH3+])C([O-])=O)=O)([R])C(=O)O[a protein]" -"5-methoxycarbonylmethoxyU34-tRNA" "a 5-(methoxycarbonylmethoxy)uridine34 in tRNA" ["a mcmo5U34 in tRNA"] null null -2 "COC(=O)COc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" +"5-methoxycarbonylmethoxyU34-tRNA" "a 5-(methoxycarbonylmethoxy)uridine34 in tRNA" ["a mcmo5U34 in tRNA"] null null -2 "COC(=O)COc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" "5-Methoxyfurocoumarins" "a 5- methoxyfurocoumarin" [] null null 0 "COc2(c1(c([R2])c([R1])oc1c([R5])c3(c2C(/[R3])=C([R4])/C(=O)O3)))" -"5-methoxyU34-tRNA" "a 5-methoxyuridine34 in tRNA" ["mo5U34"] null null -2 "COc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"5-Methyl-2-thiouracil54-in-tRNA" "a 5-methyl-2-thiouracil54 in tRNA" ["a tRNA containing 5-methyl-2-thiouracil54"] null null -2 "CC1(\C(=O)NC(=S)N(\C=1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" +"5-methoxyU34-tRNA" "a 5-methoxyuridine34 in tRNA" ["mo5U34"] null null -2 "COc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"5-Methyl-2-thiouracil54-in-tRNA" "a 5-methyl-2-thiouracil54 in tRNA" ["a tRNA containing 5-methyl-2-thiouracil54"] null null -2 "CC1(\C(=O)NC(=S)N(\C=1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" "5-Methyl-23S-rRNA-Cytosines" "a 5-methylcytosine in 23S rRNA" [] null null -2 "Cc1(c(N)nc(n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a 23S rRNA])[C@@H](OP(=O)(O[a 23S rRNA])[O-])[C@@H](O)2))=O)" "5-METHYL-DL-TRYPTOPHAN" "5-methyl-DL-tryptophan" ["5-methyltryptophan"] "C12H14N2O2" 218.255 0 "Cc1(cc2(c(cc1)[nH]cc2CC(C([O-])=O)[NH3+]))" "5-METHYL-THF" "5-methyltetrahydropteroyl mono-L-glutamate" ["5-methyltetrahydrofolate mono-L-glutamate", "5-methyl-THF mono-L-glutamate", "5-methyl-5,6,7,8-tetrahydrofolate mono-L-glutamate", "n5-methyltetrahydrofolate mono-L-glutamate", "N5-methyl-THF mono-L-glutamate", "methyl-THF mono-L-glutamate", "methyl-tetrahydrofolate mono-L-glutamate", "methyl-H4F mono-L-glutamate", "5-methyl-5,6,7,8-tetrahydropteroyl-L-glutamate", "N5-methyl--H4PteGlu1", "N5-methyltetrahydropteroyl mono-L-glutamate"] "C20H23N7O6" 457.445 -2 "CN2([C@H](CNc1(c(c(=O)[nH]c(N)n1)2))CNc3(ccc(C(=O)N[C@H](C(=O)[O-])CCC([O-])=O)cc3))" "5-METHYL-THF-GLU-N" "a 5-methyltetrahydrofolate" ["an N5-methyltetrahydrofolate"] null null -1 "CN1([C@H](CNc2(c1c([nH]c(n2)N)=O))CNc3(ccc(C(N[C@H](C(=O)[O-])CCC([R])=O)=O)cc3))" "5-METHYLAMINOMETHYL-2-SELENOURIDINE" "5-methylaminomethyl-2-selenouridine" ["mnm(5)se(2)U", "mnm5se2U"] "C11H16N3O5Se" 349.224 -1 "C[N-]CC1(\C(=O)NC(N(\C=1)[C@H]2([C@@H]([C@@H]([C@@H](CO)O2)O)O))=[Se])" "5-METHYLAMINOMETHYL-2-THIOURIDINE" "5-methylaminomethyl-2-thiouridine" ["mnm5s2U"] "C12H20N3O5S" 318.367 1 "C[NH2+]CCC1(\C(=O)NC(N(\C=1)[C@H]2([C@@H]([C@@H]([C@@H](CO)O2)O)O))=S)" -"5-METHYLCYTOSINE-34-TRNA-PRECURSORS" "a 5 methylcytosine34 in tRNA precursor" [] null null -2 "Cc1(c(N)nc(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"5-Methylcytosine-38-in-tRNAs" "a 5-methylcytosine38 in tRNA" [] null null -2 "Cc1(c(N)nc(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"5-Methylcytosine-40-tRNA-Precursors" "a 5 methylcytosine40 in tRNA precursor" [] null null -2 "Cc1(c(N)nc(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"5-Methylcytosine-48-tRNAs" "a 5-methylcytosine48 in tRNA" [] null null -2 "Cc1(c(N)nc(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"5-Methylcytosine-49-tRNAs" "a 5-methylcytosine49 in tRNA" [] null null -2 "Cc1(c(N)nc(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" +"5-METHYLCYTOSINE-34-TRNA-PRECURSORS" "a 5 methylcytosine34 in tRNA precursor" [] null null -2 "Cc1(c(N)nc(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"5-Methylcytosine-38-in-tRNAs" "a 5-methylcytosine38 in tRNA" [] null null -2 "Cc1(c(N)nc(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"5-Methylcytosine-40-tRNA-Precursors" "a 5 methylcytosine40 in tRNA precursor" [] null null -2 "Cc1(c(N)nc(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"5-Methylcytosine-48-tRNAs" "a 5-methylcytosine48 in tRNA" [] null null -2 "Cc1(c(N)nc(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"5-Methylcytosine-49-tRNAs" "a 5-methylcytosine49 in tRNA" [] null null -2 "Cc1(c(N)nc(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" "5-Methylcytosine-DNA" "a 5-methylcytosine in DNA" ["DNA containing 5-methylcytosine", "a DNA 5-methylcytosine"] null null -2 "Cc1(c(nc(n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a deoxyribonucleic acid])[C@@H](OP(=O)(O[a deoxyribonucleic acid])[O-])C2))=O)N)" "5-methylcytosine2278-in-25S-rRNA" "a 5-methylcytosine2278 in 25S rRNA" [] null null -2 "Cc1(c(N)nc(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a 25S rRNA])[C@@H](OP([O-])(=O)O[a 25S rRNA])[C@@H](O)2))" "5-methylcytosine2870-in-25S-rRNA" "a 5-methylcytosine2870 in 25S rRNA" [] null null -2 "Cc1(c(N)nc(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a 25S rRNA])[C@@H](OP([O-])(=O)O[a 25S rRNA])[C@@H](O)2))" @@ -587,7 +587,7 @@ "5-N-PROPYLTHIOADENOSINE" "5'-n-propylthioadenosine" [] "C13H19N5O3S" 325.385 0 "CCCSC[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](O)3)" "5-Nitroisocytosine-Derivatives" "a 5-nitroisocytosine derivative" [] null null 0 null "5-OXOPROLINE" "5-oxo-L-proline" ["pyrrolidone-COO", "pyrrolidone-carboxylate", "L-5-pyrrolidone-2-carboxylic acid", "L-pyroglutamic acid", "pyroglutamic acid", "pyroglutamate", "5-pyrrolidone-2-carboxylic acid", "L-pyroglutamate", "pidolic acid"] "C5H6NO3" 128.107 -1 "C(=O)([C@H]1(NC(CC1)=O))[O-]" -"5-oxyacetylU34-tRNA" "a 5-(carboxymethoxy)uridine34 in tRNA" ["a 5-oxyacetyluridine34 in tRNA"] null null -3 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(cc(OCC([O-])=O)c(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" +"5-oxyacetylU34-tRNA" "a 5-(carboxymethoxy)uridine34 in tRNA" ["a 5-oxyacetyluridine34 in tRNA"] null null -3 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(cc(OCC([O-])=O)c(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" "5-P-BETA-D-RIBOSYL-AMINE" "5-phospho-β-D-ribosylamine" ["5-P-β-D-ribosylamine", "PRA", "5-phosphoribosylamine"] "C5H11NO7P" 228.118 -1 "C(OP([O-])(=O)[O-])[C@@H]1([C@@H](O)[C@@H](O)[C@H]([NH3+])O1)" "5-P-NITROPHENYLTHIOADENOSINE" "5'-(p-nitrophenyl)thioadenosine" [] "C16H16N6O5S" 404.4 0 "C(Sc1(ccc([N+]([O-])=O)cc1))[C@H]4(O[C@@H](n2(c3(c(nc2)c(N)ncn3)))[C@H](O)[C@H](O)4)" "5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE" "N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide" ["5'-phosphoribosyl-N-formylglycineamide", "5'-P-ribosyl-N-formylglycineamide", "5'-phosphoribosyl-N-formylglycinamide", "5-phosphoribosyl-N-formalglycineamide", "5'-phosphoribosyl-formylglycinamide"] "C8H13N2O9P" 312.172 -2 "C(NC=O)C(=O)N[C@H]1([C@H](O)[C@H](O)[C@@H](COP([O-])(=O)[O-])O1)" @@ -600,12 +600,12 @@ "5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE" "2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine" ["5-phosphoribosyl-N-formylglycineamidine", "5'-phosphoribosyl-N-formyl glycineamidine", "5'-phosphoribosylformylglycinamidine"] "C8H15N3O8P" 312.196 -1 "C(NC=O)C(N[C@H]1([C@H](O)[C@H](O)[C@@H](COP([O-])(=O)[O-])O1))=[NH2+]" "50S-Ribo-protein-L16-Hydroxylarginine" "a [50S ribosomal subunit protein L16]-(3R)-3-hydroxy-L-arginine81" ["a [50S ribosomal subunit protein L16]-(2S,3R)-3-hydroxyarginine81"] null null 1 "C(NC(N)=[NH2+])C[C@@H](O)[C@@H](C(=O)[50S ribosomal subunit protein L16])N[50S ribosomal subunit protein L16]" "50S-Ribosomal-subunit-protein-L16-Arg" "a [50S ribosomal subunit protein L16]-L-arginine81" [] null null 1 "C(NC([NH3+])=N)CC[C@H](N[50S ribosomal subunit protein L16])C(=O)[50S ribosomal subunit protein L16]" -"56-Dihydrouracil16-in-tRNAs" "a 5,6-dihydrouracil16 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](N1(CCC(=O)NC(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"56-Dihydrouracil17-in-tRNAs" "a 5,6-dihydrouracil17 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](N1(CCC(=O)NC(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"56-Dihydrouracil20-in-tRNAs" "a 5,6-dihydrouracil20 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](N1(CCC(=O)NC(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"56-Dihydrouracil20a-in-tRNAs" "a 5,6-dihydrouracil20a in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](N1(CCC(=O)NC(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"56-Dihydrouracil20b-in-tRNAs" "a 5,6-dihydrouracil20b in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](N1(CCC(=O)NC(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"56-Dihydrouracil47-in-tRNAs" "a 5,6-dihydrouracil47 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](N1(CCC(=O)NC(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" +"56-Dihydrouracil16-in-tRNAs" "a 5,6-dihydrouracil16 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](N1(CCC(=O)NC(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"56-Dihydrouracil17-in-tRNAs" "a 5,6-dihydrouracil17 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](N1(CCC(=O)NC(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"56-Dihydrouracil20-in-tRNAs" "a 5,6-dihydrouracil20 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](N1(CCC(=O)NC(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"56-Dihydrouracil20a-in-tRNAs" "a 5,6-dihydrouracil20a in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](N1(CCC(=O)NC(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"56-Dihydrouracil20b-in-tRNAs" "a 5,6-dihydrouracil20b in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](N1(CCC(=O)NC(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"56-Dihydrouracil47-in-tRNAs" "a 5,6-dihydrouracil47 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](N1(CCC(=O)NC(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" "5678-TETRAHYDROPTERIDINE" "a 5,6,7,8-tetrahydropteridine" ["a 5,6,7,8-tetrahydropterine", "a tetrahydropteridine"] "C6H8N4" 136.156 0 "C1(CNc2(ncncc(N1)2))" "5mCpG-sites" "a 5-methyl-CpG site" ["a 5mCpG site"] null null -3 "Cc1(c(N)nc(n(c1)[C@@H]5(O[C@H](COP(=O)([O-])O[a deoxyribonucleic acid])[C@@H](OP(OC[C@H]4(O[C@@H](n2(cnc3(c2nc(N)[nH]c(=O)3)))C[C@H](OP(O[a deoxyribonucleic acid])(=O)[O-])4))(=O)[O-])C5))=O)" "5Z-dodec-5-enoyl-Lipid" "a [glycerolipid]-(5Z)-dodec-5-enoate" [] null null 0 "CCCCCC\C=C/CCCCCCCCCC([a glycerolipid])=O" @@ -615,7 +615,7 @@ "6-Acetyl-Beta-D-Galactosides" "a 6-acetyl-β-D-galactoside" ["6-acetyl-β-D-galactoside"] null null 0 "CC(=O)OC[C@@H]1([C@H](O)[C@H](O)[C@@H](O)[C@H](O[R])O1)" "6-AMINOPENICILLANATE" "6-aminopenicillanate" ["6-Aminopenicillanic acid", "6-APA"] "C8H12N2O3S" 216.254 0 "CC1(C)(S[C@@H]2([C@H]([NH3+])C(=O)N([C@@H](C([O-])=O)1)2))" "6-Deoxyhexoses" "a 6-deoxypyranose" ["a 6-deoxyhexose"] null null 0 null -"6-Dimethylallyladenosine37-tRNAs" "N6-(3-methylbut-2-en-1-yl)-adenosine37 in tRNA" ["2-methylthio-N-dimethylallyladenosine37 in tRNA", "tRNA-(2-methylthio-N-6-dimethylallyladenosine)", "N6-dimethylallyladenosine37 in tRNA"] null null -2 "CC(C)=CCNc1(ncnc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))" +"6-Dimethylallyladenosine37-tRNAs" "N6-(3-methylbut-2-en-1-yl)-adenine37 in tRNA" ["2-methylthio-N-dimethylallyladenosine37 in tRNA", "tRNA-(2-methylthio-N-6-dimethylallyladenosine)", "N6-dimethylallyladenosine37 in tRNA", "N6-(3-methylbut-2-en-1-yl)-adenosine37 in tRNA"] null null -2 "CC(C)=CCNc1(ncnc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))" "6-Glc-Protopanaxatriol-ginsenosides" "a protopanaxatriol-type ginsenoside with a single glucosyl at position 6" [] null null 0 "CC(C)=CCC[C@]([C@@H]1([C@@H]3([C@@](C)(CC1)[C@]4(C)(C[C@H](O[C@H]2([C@H](O)[C@@H](O)[C@H](O)[C@@H](CO)O2))[C@H]5(C([C@@H](O)CC[C@](C)([C@@H](C[C@@H](O)3)4)5)(C)C)))))(C)O[R]" "6-Gly-Glc-Protopanaxatriol-ginsenosides" "a protopanaxatriol-type ginsenoside with two glycosyl residues at position 6" [] null null 0 "CC(C)=CCC[C@]([C@@H]1([C@@H]3([C@@](C)(CC1)[C@]4(C)(C[C@H](O[C@H]2([C@H](O[R1])[C@@H](O)[C@H](O)[C@@H](CO)O2))[C@H]5(C([C@@H](O)CC[C@](C)([C@@H](C[C@@H](O)3)4)5)(C)C)))))(C)O[R2]" "6-H-5-I-2-methylhexanoates" "a 6-hydroxy-5-isopropenyl-2-methylhexanoate" ["a 6-hydroxyisoprop(en)ylmethylhexanoate"] "C10H17O3" 185.242 -1 "C=C(C)C(CCC(C)C(=O)[O-])CO" @@ -680,7 +680,7 @@ "a-1-palmitoyl-2-acyl-phosphatidylserine" "a 1-palmitoyl-2-acyl-phosphatidylserine" ["1-hexadecanoyl-2-acyl-phosphatidylserine", "phosphatidylserine (1-palmitoyl, 2-acyl)", "1-palmitoyl-2-acyl-3-sn-glycero-3-phosphoserine"] null null -1 "CCCCCCCCCCCCCCCC(OC[C@@H](OC(=O)[R])COP([O-])(=O)OC[C@@H](C(=O)[O-])[NH3+])=O" "a-1iNisup2sup-ethenoguanine-in-DNA" "a 1,N2-ethenoguanine in DNA" ["εG", "epsilonG"] null null -2 "c2(cn3(c(=O)c1(ncn(c1[nH]c(n2)3)[C@@H]4(O[C@H](COP(=O)([O-])O[a deoxyribonucleic acid])[C@@H](OP(=O)(O[a deoxyribonucleic acid])[O-])C4))))" "A-2-HYDROXYCARBONYL-COMPOUND" "a 2-hydroxycarbonyl compound" [] null null 0 "C(=O)C(O)[R]" -"A-2-METHYLTHIOCYTOSINE32-IN-TRNA" "a 2-methylthiocytosine32 in tRNA" ["ms2C tRNA"] null null -2 "CSC1(\N(\C=C/C(/N=1)=N)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" +"A-2-METHYLTHIOCYTOSINE32-IN-TRNA" "a 2-methylthiocytosine32 in tRNA" ["ms2C tRNA"] null null -2 "CSC1(\N(\C=C/C(/N=1)=N)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" "a-26-diamino-4-oxo-5-formamidopyrimidine" "a 2,6-diamino-4-oxo-5-formamidopyrimidine in DNA" ["FapyG in DNA"] null null -2 "C(OP(=O)([O-])O[a deoxyribonucleic acid])[C@H]2(O[C@@H](Nc1(c(NC=O)c(=O)[nH]c(N)n1))C[C@H](OP(O[a deoxyribonucleic acid])(=O)[O-])2)" "A-antigen" "an A antigen" ["an A histo-blood group antigen", "a histo-blood group substance A", "an N-acetyl-α-D-galactosaminyl-(1,3)-[α-L-fucosyl-(1,2)]-β-D-galactosyl-R", "a [glycoprotein]-N-acetyl-α-D-galactosaminyl-(1,3)-[α-L-fucosyl-(1,2)]-D-galactose"] null null 0 "C[C@@H]3(O[C@@H](O[C@H]2([C@H](O[R])O[C@H](CO)[C@H](O)[C@H](O[C@H]1(O[C@@H]([C@H](O)[C@H](O)[C@@H](NC(=O)C)1)CO))2))[C@@H](O)[C@@H]([C@H](O)3)O)" "A-Clusters" "A-cluster" [] null 87.907 0 null @@ -706,6 +706,7 @@ "A-DMAN-HEX-1:5_6:D" "a-dman-HEX-1:5|6:d" ["α-D-Rhap"] null null 0 null "A-DMAN-OCT-2:6_1:A_2:KETO_3:D" "a-dman-OCT-2:6|1:a|2:keto|3:d" ["α-Kdo"] null null 0 null "a-DNA-3-alpha-beta-unsaturated-aldehyde" "a [DNA]-3'-α,β-unsaturated aldehyde" [] null null -2 "C(=O)/C=C/[C@@H](O)COP(O[C@H]1(C[C@H]([a nucleobase])O[C@H](COP(=O)([O-])O[a deoxyribonucleic acid])1))(=O)[O-]" +"A-DNMP-L-TYROSINE" "a 2'-deoxyribonucleoside 5'-monophosphate-L-tyrosine" ["tyrosinyl-5'-dNMP"] null null -1 "C(OP(=O)([O-])Oc1(ccc(cc1)C[C@@H](C(=O)[O-])[NH3+]))[C@H]2(O[C@@H]([a nucleobase])C[C@H](O)2)" "A-DXYL-PEN-1:5" "a-dxyl-PEN-1:5" ["α-D-Xylp"] null null 0 null "A-GALACTOSYLCERAMIDE" "a β-D-galactosyl-N-acylsphingosine" ["a galactosylceramide"] null null 0 "CCCCCCCCCCCCC/C=C/[C@H]([C@H](CO[C@@H]1(O[C@H](CO)[C@H](O)[C@H](O)[C@@H](O)1))NC(=O)[R])O" "a-GlcNAc-16-anhydro-MurNAc-tripeptide" "a GlcNAc-1,6-anhydro-MurNAc-tripeptide" [] null null -1 "C[C@H](NC([C@H](O[C@@H]2([C@@H](NC(=O)C)C3(OCC([C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](NC(=O)C)1))2)O3)))C)=O)C(N[C@H](CCC(=O)N[C@@H](CCCC([R])[NH3+])C(=O)[O-])C(=O)[O-])=O" @@ -743,7 +744,6 @@ "Accep-Xyloglucan-With-Xyloglucanyl-Segs" "an acceptor xyloglucan with xyloglucanyl segment" [] null null 0 null "Acceptor" "an oxidized electron carrier" ["A", "an oxidized unknown electron donor", "an oxidized unknown electron acceptor"] null null 0 null "Acceptor-Xyloglucans" "an acceptor xyloglucan" [] null null 0 null -"Acceptors" "an acceptor" [] null null 0 null "ACET" "acetate" ["acetate", "acetic acid", "ethanoate"] "C2H3O2" 59.044 -1 "CC([O-])=O" "ACETALD" "acetaldehyde" ["acetic aldehyde", "ethanal", "aldehyde", "ethyl aldehyde"] "C2H4O" 44.053 0 "CC=O" "ACETAMIDE" "acetamide" [] "C2H5NO" 59.068 0 "CC(=O)N" @@ -793,18 +793,18 @@ "Acylated-Dihydro-Lipoyl-Proteins-Lysine" "an acylated [lipoyl-carrier protein] N6-dihydrolipoyl-L-lysine" ["an acylated [enzyme] N6-(dihydrolipoyl)lysine"] null null 0 "C([a [lipoyl-carrier protein]])C(=O)[C@H](CCCCNC(CCCCC(S)CCSC([R])=O)=O)N[a [lipoyl-carrier protein]]" "ACYLCHLORIDE" "an acylchloride" [] null null 0 "C(=O)(Cl)[R]" "Acylcholines" "an acylcholine" [] null null 1 "C(COC(=O)[R])[N+](C)(C)C" -"ACYLDOLICHOL" "an acyldolichol" [] null null 0 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CC[C@H](C)CCOC(=O)[R]" +"ACYLDOLICHOL" "an acyldolichol" [] null null 0 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/[R]CC(/C)=C/CCC(C)CCOC(=O)[R]" "Acylglycerone-phosphate" "an acylglycerone phosphate" [] null null 0 null "ACYLSUGAR" "an acylsugar" [] null null 0 null "ADENINE" "adenine" ["6-aminopurine", "A"] "C5H5N5" 135.128 0 "c1(N)(ncnc2([nH]cnc12))" -"Adenine-34-in-tRNAs" "an adenine34 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" +"Adenine-34-in-tRNAs" "an adenine34 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" "Adenine-37-tRNA-Alas" "an adenine37 in tRNAala" [] null null -2 "C(OP(=O)([O-])O[a tRNAAla])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a tRNAAla])[O-])3)" "Adenine-Cytokinin-Glucosides" "an adenine-type cytokinin glucoside" [] null null 0 null "Adenine-Cytokinins" "an adenine-type cytokinin" [] null null 0 null "Adenine-In-Double-Stranded-RNAs" "an adenine in double-stranded RNA" [] null null -2 "C(OP(=O)([O-])O[a double-stranded RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a double-stranded RNA])[O-])3)" "Adenine-Nucleotides" "an adenine nucleotide" [] null null 0 null "ADENINE-RING" "adenine-ring" [] "C5H5N5" 135.128 0 "c1(nc2(c([nH]1)c(ncn2)N))" -"Adenine57-Adenine58-tRNAs" "an adenine57/adenine58 in tRNA" [] null null -3 "C(OP(O[a tRNA])(=O)[O-])[C@H]6(O[C@@H](n1(cnc2(c1ncnc(N)2)))[C@H](O)[C@H](OP(OC[C@H]5(O[C@@H](n3(cnc4(c3ncnc(N)4)))[C@H](O)[C@H](OP(O[a tRNA])([O-])=O)5))([O-])=O)6)" +"Adenine57-Adenine58-tRNAs" "an adenine57/adenine58 in tRNA" [] null null -3 "C(OP(O[a transfer RNA])(=O)[O-])[C@H]6(O[C@@H](n1(cnc2(c1ncnc(N)2)))[C@H](O)[C@H](OP(OC[C@H]5(O[C@@H](n3(cnc4(c3ncnc(N)4)))[C@H](O)[C@H](OP(O[a transfer RNA])([O-])=O)5))([O-])=O)6)" "ADENOSINE" "adenosine" ["adenine-D-ribose", "9-β-D-ribofuranosyl-9H-purin-6-amine", "9-β-D-ribofuranosidoadenine", "adenine riboside"] "C10H13N5O4" 267.244 0 "C(O)[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](O)3)" "Adenosine-Nucleotides" "an adenosine nucleotide" [] null null 0 null "ADENOSINE5TRIPHOSPHO5ADENOSINE" "P1,P3-bis(5'-adenosyl) triphosphate" ["bis(5'-adenosyl) triphosphate", "adenosine 5'-(tetrahydrogen triphosphate), P''-5'-ester with adenosine", "Ap3A", "adenosine(5')triphospho(5')adenosine", "5',5'''-diadenosine triphosphate"] "C20H24N10O16P3" 753.388 -3 "C(OP(=O)([O-])OP(=O)([O-])OP(=O)([O-])OC[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](O)3))[C@H]6(O[C@@H](n4(c5(c(nc4)c(N)ncn5)))[C@H](O)[C@H](O)6)" @@ -896,7 +896,6 @@ "All-Amines" "an amine" [] null null 1 "[N+]([R4])([R3])([R1])[R2]" "All-Amino-Acids" "an amino acid or its derivative" [] null null 0 null "All-Biopterines" "a biopterin" ["a 2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine"] "C9H11N5O3" 237.218 0 "CC(C(O)c2(cnc1(nc([nH]c(c1n2)=O)N)))O" -"All-Carboxy-Acids" "all carboxy acids" [] null null 0 null "All-Coas" "a coenzyme A-activated compound" ["a CoA derivative", "a CoA-activated compound"] null null 0 null "All-Folates" "all folates" [] null null 0 null "All-Glutathiones" "glutathione and derivatives" [] null null 0 null @@ -934,7 +933,7 @@ "alpha-D-Man-13-beta-D-Man-R" "an α-D-Man-(1→3)-β-D-Man-R" [] null null 0 "C([C@H]1(O[C@@H]([C@@H](O)[C@@H](O)[C@@H]1O)O[C@H]2([C@H](O)[C@H](O[C@@H](O[R])[C@@H](O)2)CO)))O" "Alpha-D-Mannosides" "an α-D-mannoside" [] null null 0 "C(O)[C@@H]1([C@@H](O)[C@H](O)[C@H](O)[C@@H](O[R])O1)" "ALPHA-D-MANNOSYL-3-PHOSPHOGLYCERATE" "2-O-(α-D-mannosyl)-3-phospho-D-glycerate" ["mannosyl-3-phospho-D-glycerate"] "C9H14O12P" 345.176 -3 "C(OP([O-])(=O)[O-])[C@@H](O[C@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@H](O)1))C(=O)[O-]" -"ALPHA-D-MANNOSYLCHITOBIO" "β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["a β-1,4-D-mannosylchitobiosyldiphosphodolichol", "a {β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "an α-D-mannosylchitobiosyldiphosphodolichol", "α-D-mannosylchitobiosyldiphosphodolichol", "β-D-mannosyl-(1→4)-N,N'-diacetylchitobiosyldiphosphodolichol", "β-1,4-D-mannosylchitobiosyldiphosphodolichol", "a mannosyl-(N-acetylglucosaminyl)2-diphosphodolichol", "β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-α-D-glucosaminyl-diphosphodolichol"] "C102H168N2O22P2" 1836.397 -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(CCOP(OP(O[C@H]3(O[C@H](CO)[C@@H](O[C@H]2([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO)O))[C@@H](CO)O2)O))[C@H](O)[C@@H](NC(=O)C)3))(=O)[O-])(=O)[O-])C" +"ALPHA-D-MANNOSYLCHITOBIO" "β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["a β-1,4-D-mannosylchitobiosyldiphosphodolichol", "a {β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "an α-D-mannosylchitobiosyldiphosphodolichol", "α-D-mannosylchitobiosyldiphosphodolichol", "β-D-mannosyl-(1→4)-N,N'-diacetylchitobiosyldiphosphodolichol", "β-1,4-D-mannosylchitobiosyldiphosphodolichol", "a mannosyl-(N-acetylglucosaminyl)2-diphosphodolichol", "β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-α-D-glucosaminyl-diphosphodolichol"] null null -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/[R]CC(/C)=C/CCC(CCOP(OP(O[C@H]3(O[C@H](CO)[C@@H](O[C@H]2([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO)O))[C@@H](CO)O2)O))[C@H](O)[C@@H](NC(=O)C)3))(=O)[O-])(=O)[O-])C" "Alpha-factor" "an α factor" ["Saccharomyces cerevisiae mating pheromon α factor"] null null 0 null "ALPHA-GLC-6-P" "α-D-glucose 6-phosphate" ["α-glucose 6-phosphate", "α-D-glucose-6-P"] "C6H11O9P" 258.121 -2 "C(OP(=O)([O-])[O-])[C@H]1(O[C@H](O)[C@H](O)[C@@H](O)[C@H](O)1)" "ALPHA-GLUCOSE" "α-D-glucopyranose" ["α-glucose", "α-D-glucose"] "C6H12O6" 180.157 0 "C(O)[C@H]1(O[C@@H]([C@@H]([C@H]([C@@H]1O)O)O)O)" @@ -975,7 +974,7 @@ "Amino-Acids" "an amino acid" [] null null 0 "C(C([O-])=O)([R])[NH3+]" "Amino-Acids-20" "a proteinogenic amino acid" ["a protein-building amino acid", "a standard α amino acid"] null null 0 "[C@@H]([NH3+])([R])C([O-])=O" "Amino-alcohols" "an amino alcohol" [] null null 0 null -"AMINO-GROUP" "an amino group" [] "CH3N" 29.041 -2 "[C-3][NH3+]" +"AMINO-GROUP" "an amino group" [] null null 1 "[R][NH3+]" "AMINO-HYDROXYMETHYL-METHYL-PYR-P" "4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine" ["4-amino-5-phosphomethyl-2-methylpyrimidine", "4-amino-5-hydroxymethyl-2-methylpyrimidine-phosphate"] "C6H8N3O4P" 217.121 -2 "Cc1(ncc(COP(=O)([O-])[O-])c(n1)N)" "AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP" "4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine" ["4-amino-5-hydroxymethyl-2-methylpyrimidine-PP"] "C6H8N3O7P2" 296.093 -3 "Cc1(nc(N)c(cn1)COP([O-])(=O)OP([O-])(=O)[O-])" "AMINO-OH-HYDROXYMETHYL-DIHYDROPTERIDINE" "6-(hydroxymethyl)-7,8-dihydropterin" ["2-amino-6-(hydroxymethyl)-7,8-dihydropteridin-4(3H)-one", "2-amino-6-(hydroxymethyl)-7,8-dihydropteridin-4-one"] "C7H9N5O2" 195.18 0 "C(O)C2(\CNc1(c(c(=O)[nH]c(N)n1)/N=2))" @@ -989,6 +988,7 @@ "Aminoglycosides" "an aminoglycoside" ["a aminoglycoside"] null null 0 null "AMINOMALONATE" "aminomalonate" ["aminomalonic acid"] "C3H4NO4" 118.069 -1 "C([NH3+])(C(=O)[O-])C(=O)[O-]" "AMINOMETHYLDIHYDROLIPOYL-GCVH" "a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine" [] null null 1 "C(NC(=O)CCCCC(CCSC[NH3+])S)CCC[C@@H](C(=O)[a glycine-cleavage complex H protein])N[a glycine-cleavage complex H protein]" +"Aminophenols" "an aminophenol" [] null null 0 null "Aminopyrimidines" "an aminopyrimidine" [] null null 0 null "AMMONIA" "ammonia" ["NH3"] "H3N" 17.03 0 "N" "AMMONIUM" "ammonium" ["NH4+"] "H4N" 18.038 1 "[NH4+]" @@ -1009,6 +1009,7 @@ "aNeuAc-23-bGal-13-bGlcNAC-R" "an N-acetyl-α-neuraminyl-(2→3)-β-D-galactosyl-(1→3)-N-acetyl-β-D-glucosaminyl-R" ["α-N-acetylneuraminyl-(2->3)-β-D-galactosyl-(1->3)-N-acetyl-D-glucosaminyl-R", "an α-N-acetylneuraminyl-2,3-β-D-galactosyl-1,3-N-acetyl-D-glucosaminyl-[glycoprotein]"] null null -1 "CC(=O)N[C@@H]3([C@H](C[C@@](C(=O)[O-])(O[C@@H]2([C@@H](O)[C@H](O[C@@H]1([C@@H](NC(C)=O)[C@@H](O[C@H](CO)[C@@H](O)1)O[R]))O[C@H](CO)[C@H](O)2))O[C@H]3[C@H](O)[C@H](O)CO)O)" "Angiotensins" "an angiotensin" [] null null 0 null "Angucyclins" "an angucyclin" ["an angucycline"] null null 0 null +"Anhydro-Peptidoglycan-Monomer" "a peptidoglycan monomer with an anhydro MurNAc residue" ["a GlcNAc-(1->4)-1,6-anhydro-MurNAc-peptide monomer", "a N-acetylglucosamine--1,6-anhydro-N-acetylmuramoyl-(peptide) momer"] null null 0 "C[C@@H](O[C@@H]2([C@@H](NC(=O)C)C3(OCC([C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](NC(=O)C)1))2)O3)))C(=O)N[a peptide]" "Anhydro-Sugars" "an anhydro sugar" [] null null 0 null "ANILIDE" "an anilide" [] null null 0 "c1(ccc(NC(=O)[R])cc1)" "Anions" "an anion" [] null null 0 null @@ -1024,8 +1025,7 @@ "Anthracyclines" "an anthracycline" [] null null 0 null "ANTHRANILATE" "anthranilate" ["anthranilic acid", "2-aminobenzoic acid", "vitamin L1", "o-aminobenzoic acid", "2-aminobenzoate", "o-aminobenzoate"] "C7H6NO2" 136.13 -1 "C(c1(c(cccc1)N))(=O)[O-]" "anthraniloyl-PqsD" "a [PqsD protein]-S-anthraniloyl-L-cysteine" [] null null 0 "C(=O)([a [PqsD protein]])[C@@H](N[a [PqsD protein]])CSC(c1(c(cccc1)N))=O" -"Anthraquinones" "an anthraquinone derivative" [] "C14H8O2" 208.216 0 "c1(ccc2(c(=O)c3(ccccc(c(=O)c(c1)2)3)))" -"Antibiotics" "an antibiotic" [] null null 0 null +"Anthraquinones" "an anthraquinone" [] "C14H8O2" 208.216 0 "c1(ccc2(c(=O)c3(ccccc(c(=O)c(c1)2)3)))" "Antigen-ALey" "an A (Lewis y) histo-blood group epitope" ["a blood group ALey antigen"] null null 0 "C[C@H]5([C@@H](O)[C@@H](O)[C@H](O)[C@H](O[C@@H]1([C@@H](NC(=O)C)[C@H](O[R])O[C@H](CO)[C@H]1O[C@H]4(O[C@H](CO)[C@H](O)[C@H](O[C@H]2(O[C@@H]([C@H](O)[C@H](O)[C@@H](NC(=O)C)2)CO))[C@@H](O[C@@H]3(O[C@@H](C)[C@@H](O)[C@@H](O)[C@H](O)3))4)))O5)" "Antigen-BLey" "a B (Lewis y) histo-blood group epitope" ["a BLey histo-blood group antigen"] null null 0 "C[C@H]5([C@@H](O)[C@@H](O)[C@H](O)[C@H](O[C@@H]1([C@@H](NC(=O)C)[C@H](O[R])O[C@H](CO)[C@H]1O[C@H]4(O[C@H](CO)[C@H](O)[C@H](O[C@H]2(O[C@@H]([C@H](O)[C@H](O)[C@@H](O)2)CO))[C@@H](O[C@@H]3(O[C@@H](C)[C@@H](O)[C@@H](O)[C@H](O)3))4)))O5)" "Antigen-Leb" "a Lewis b epitope" ["an Leb antigen", "a Lewis b antigen", "a histo-blood group Lewis b antigen"] null null 0 "C[C@H]4([C@@H](O)[C@@H](O)[C@H](O)[C@H](O[C@H]3([C@H](O[C@@H]2(O[C@H](CO)[C@H](O)[C@H](O)[C@@H](O[C@@H]1(O[C@@H](C)[C@@H](O)[C@@H](O)[C@H](O)1))2))[C@@H](NC(=O)C)[C@H](O[R])O[C@H](CO)3))O4)" @@ -1141,6 +1141,7 @@ "Bacteriochlorophyll-f" "a bacteriochlorophyll f" [] null null -1 "C([R2])([R1])CC6(/C7(\C=c4(c(C[R3])c2(C(=O)[CH-]C3(\C1(/[C@@H](CCC(=O)OC/C=C(C)/CC/C=C(C)/CCC=C(C)C)[C@H](C)C(\N=1)=C\c5(c(C)c(C(O)C)c(n([Mg]n(c\2=3)4)5)\C=C(C(/C=O)=6)/N=7)))))))" "Bacteriochlorophyllide-d" "a bacteriochlorophyllide d" [] null null -2 "C([R2])([R1])CC6(\C7(/C=c4(c(C[R3])c2(C(=O)[CH-]C3(\C1(/[C@@H](CCC(=O)[O-])[C@H](C)C(\N=1)=C\c5(c(C)c(C(O)C)c(n([Mg]n(c\2=3)4)5)\C=C(C(/C)=6)/N=7)))))))" "Bacteriochlorophyllide-f" "a bacteriochlorophyllide f" [] null null -2 "C([R2])([R1])CC6(/C7(\C=c4(c(C[R3])c2(C(=O)[CH-]C3(\C1(/[C@@H](CCC(=O)[O-])[C@H](C)C(\N=1)=C\c5(c(C)c(C(O)C)c(n([Mg]n(c\2=3)4)5)\C=C(C(/C=O)=6)/N=7)))))))" +"Bacteriocins" "a bacteriocin" [] null null 0 null "Bases" "a nucleobase" ["a nucleotide base", "a nitrogenous base"] null null 0 null "Basic-Amino-Acids" "a basic amino acid" [] null null 0 "[C@@H]([NH3+])([R])C([O-])=O" "BCAA-dehydrogenase-2MB-DH-lipoyl" "an [apo BCAA dehydrogenase E2 protein] N6-S-[2-methylbutanoyl]dihydrolipoyl-L-lysine" [] null null 0 "CCC(C)C(=O)SCCC(S)CCCCC(=O)NCCCC[C@H](N[[branched chain α-keto acid dehydrogenase] lipoyl carrier component])C(C[[branched chain α-keto acid dehydrogenase] lipoyl carrier component])=O" @@ -1214,7 +1215,6 @@ "Binuclear-Copper-Centers" "a binuclear copper center" ["Cu-Cu active site"] null 87.907 0 null "BIO-5-AMP" "biotinyl-5'-adenylate" ["biotinyl-5'-AMP"] "C20H27N7O9PS" 572.509 -1 "C(OP(OC(=O)CCCC[C@@H]1(SC[C@@H]2(NC(=O)N[C@H]12)))(=O)[O-])[C@H]5(O[C@@H](n3(c4(c(nc3)c(N)ncn4)))[C@H](O)[C@H](O)5)" "Biological-Pigments" "a biological pigment" [] null null 0 null -"Biological-Roles" "a biological role" [] null null 0 null "BIOTIN" "biotin" ["vitamin H", "coenzyme R", "D-biotin", "vitamin B7"] "C10H15N2O3S" 243.3 -1 "C1(S[C@@H](CCCCC(=O)[O-])[C@H]2(NC(=O)N[C@@H]12))" "Biotin-EC6-4-1-4" "a [methylcrotonoyl-CoA carboxylase]-biotin-N6-L-lysine" [] null null 0 "C(NC(=O)CCCC[C@@H]1(SC[C@@H]2(NC(=O)N[C@H]12)))CCC[C@@H](C([a methylcrotonoyl-CoA carboxylase])=O)N[a methylcrotonoyl-CoA carboxylase]" "biotin-L-lysine-in-BCCP-dimers" "a [biotin carboxyl-carrier-protein dimer]-N6-biotinyl-L-lysine" ["a [BCCP dimer]-N6-biotinyl-L-lysine"] null null 0 "C(NC(=O)CCCC[C@@H]1(SC[C@@H]2(NC(=O)N[C@H]12)))CCC[C@@H](C([a [biotin carboxyl-carrier protein] monomer])=O)N[a [biotin carboxyl-carrier protein] monomer].C(NC(=O)CCCC[C@@H]3(SC[C@@H]4(NC(=O)N[C@H]34)))CCC[C@@H](C([a [biotin carboxyl-carrier protein] monomer])=O)N[a [biotin carboxyl-carrier protein] monomer]" @@ -1288,7 +1288,7 @@ "CA+2" "Ca2+" ["calcium(II)", "Ca++", "calcium ion", "CaII"] "Ca" 40.08 2 "[Ca+2]" "CADAVERINE" "cadaverine" ["pentane-1,5-diamine", "diaminopentane", "1,5-diaminopentane", "1,5-pentanediamine", "pentamethylenediamine", "1-BioDex"] "C5H16N2" 104.195 2 "C([NH3+])CCCC[NH3+]" "CAFFEATE" "caffeate" ["caffeic acid", "3-(3,4-dihydroxyphenyl)prop-2-enoate"] "C9H7O4" 179.152 -1 "c1(cc(O)c(cc(/C=C/C([O-])=O)1)O)" -"CAFFEOYLQUINATE" "chlorogenate" ["caffeoylquinate", "trans-5-O-caffeoyl-D-quinate", "chlorogenic acid", "3-O-caffeoyl-D-quinic acid"] "C16H17O9" 353.305 -1 "C([O-])(=O)[C@]1(O)(C[C@@H](O)[C@@H](O)[C@@H](C1)OC(=O)/C=C/c2(cc(O)c(O)cc2))" +"CAFFEOYLQUINATE" "chlorogenate" ["caffeoylquinate", "trans-5-O-caffeoyl-D-quinate", "chlorogenic acid", "5-O-caffeoyl-D-quinic acid"] "C16H17O9" 353.305 -1 "C([O-])(=O)[C@]1(O)(C[C@@H](O)[C@@H](O)[C@@H](C1)OC(=O)/C=C/c2(cc(O)c(O)cc2))" "Calendoyl-Lipid" "a [glycerolipid]-calendate" ["a [glycerolipid]-(8E,10E,12Z)-octadeca-8,10,12-trienoate", "a [glycerolipid]-(8E,10E,12Z)-octadecatrienoate"] null null 0 "CCCCC\C=C/C=C/C=C/CCCCCCC([a glycerolipid])=O" "Callose" "callose" [] null null 0 "C([C@H]3(O[C@@H](O[C@@H]2([C@H]([C@H](O[C@H]1([C@@H]([C@H](O[C@H]([C@@H]1O)O[R2])CO)O))O[C@@H]([C@H]2O)CO)O))[C@@H]([C@H]([C@@H]3O)O[R1])O))O" "Calmodulin-N6-methyl-L-lysine-22" "a [calmodulin]-L-lysine22" [] null null 1 "C([NH3+])CCC[C@@H](C(=O)[a calmodulin])N[a calmodulin]" @@ -1306,7 +1306,7 @@ "CARBAMYUL-L-ASPARTATE" "N-carbamoyl-L-aspartate" ["carbamyul-L-aspartate", "carbamyul-aspartate", "carbamoyl-aspartate", "carbamyl-aspartate", "carbamyl-L-aspartate", "L-ureidosuccinate"] "C5H6N2O5" 174.113 -2 "C(=O)([O-])C[C@H](NC(N)=O)C([O-])=O" "Carbapenems" "a carbapenem" [] null null -1 "C2(=O)(N1([C@H](C([R2])C(/[R3])=C(C([O-])=O)/1)C([R1])2))" "Carbazoles" "a carbazole" [] null null 0 null -"carbo-me-ur-34-tRNA" "a carboxymethyluridine34 in tRNA" ["a cm5U34 in tRNA"] null null -3 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(cc(CC([O-])=O)c(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" +"carbo-me-ur-34-tRNA" "a carboxymethyluridine34 in tRNA" ["a cm5U34 in tRNA"] null null -3 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(cc(CC([O-])=O)c(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" "Carbobicyclic-Compounds" "a carbobicyclic compound" [] null null 0 null "Carbocyclic-Compounds" "a carbocyclic compound" [] null null 0 null "Carbohydrate-acid-derivatives" "a carbohydrate acid derivative" [] null null 0 null @@ -1329,7 +1329,7 @@ "CARBOXYL-GROUP" "a carboxyl group" [] "CHO2" 45.018 -1 "C(=O)[O-]" "Carboxylate-Derivatives" "a carboxylate derivative" ["a carboxylic acid derivative"] null null 0 null "Carboxylate-siderophores" "a carboxylate siderophore" [] null null -1 "C([a siderophore])C([O-])=O" -"Carboxylates" "a carboxylate" ["carboxylic acid", "carboxylate"] null null -1 "C([R])(=O)[O-]" +"Carboxylates" "a carboxylate" ["a carboxylic acid"] null null -1 "C([R])(=O)[O-]" "Carboxylic-esters" "a carboxylic ester" [] null null 0 "C(O[R2])(=O)[R1]" "CARBOXYMETHOXYLAMINE" "carboxymethoxylamine" ["aminooxyacetate", "(aminooxy)acetic acid", "(aminooxy)acetate", "hydroxylamine-O-acetic acid"] "C2H4NO3" 90.058 -1 "C(ON)C([O-])=O" "Carboxymethylcellulose" "(carboxymethyl)cellulose" ["cellulose gum", "CMC", "E466"] null null -4 "C(O)[C@H]4(O[C@@H](O[C@H]1([C@H](O)[C@@H](O)[C@H]([R2])O[C@H](COCC([O-])=O)1))[C@H](OCC([O-])=O)[C@@H](O)[C@H](O[C@@H]3(O[C@H](CO)[C@@H](O[C@@H]2(O[C@H](COCC([O-])=O)[C@@H]([R1])[C@H](O)[C@@H](O)2))[C@H](OCC([O-])=O)[C@@H](O)3))4)" @@ -1413,7 +1413,7 @@ "CHOLINE" "choline" ["(2-hydroxyethyl)trimethylammonium"] "C5H14NO" 104.172 1 "C(CO)[N+](C)(C)C" "CHONDROITIN-4-SULFATE" "a [chondroitin-sulfate] containing 4-O-sulfo-N-acetylgalactosamine" ["chondroitin 4'-sulfate", "chondroitin-4-sulfate", "[chondroitin]-N-acetyl-galactosamine 4'-sulfate"] null null -5 "CC(=O)N[C@H]8([C@H](O[C@H]6([C@H](O)[C@@H](O)[C@H](O[C@@H]5([C@@H](NC(=O)C)[C@H](O[C@H]1([C@H](O)[C@@H](O)[C@@H](O[C@H](C(=O)[O-])1)O[C@@H]4([C@@H](O)[C@H](O[C@@H]3([C@@H](O)[C@H](O[C@H]2([C@H](O)[C@@H](O)[C@H](OC[C@H](N[a protein])C(=O)[a protein])OC2))O[C@H](CO)[C@H](O)3))O[C@H](CO)[C@H](O)4)))O[C@H](CO)[C@H](OS(=O)([O-])=O)5))O[C@H](C(=O)[O-])6))O[C@H](CO)[C@H](OS(=O)([O-])=O)[C@H](OC7(O[C@H](C(=O)[O-])[C@@H](O[R])[C@H](O)[C@H]7O))8)" "CHONDROITIN-46-DISULFATE" "a [chondroitin-sulfate] containing 4,6-di-O-sulfo-N-acetyl-D-galactosamine" ["[chondroitin]-N-acetyl-galactosamine 4',6'-disulfate", "[chondroitin]-N-acetyl-galactosamine 4',6'-bissulfate", "[chondroitin]-4-O,6-O-bissulfo-N-acetylgalactosamine"] null null -6 "CC(=O)N[C@H]8([C@H](O[C@H]1([C@H](O)[C@@H](O)[C@@H](O[C@H](C(=O)[O-])1)O[C@@H]4([C@@H](O)[C@H](O[C@@H]3([C@@H](O)[C@H](O[C@H]2([C@H](O)[C@@H](O)[C@H](OC[C@H](N[a protein])C(=O)[a protein])OC2))O[C@H](CO)[C@H](O)3))O[C@H](CO)[C@H](O)4)))O[C@H](CO)[C@H](OS(=O)([O-])=O)[C@H](O[C@@H]7(O[C@H](C(=O)[O-])[C@@H](O[C@@H]6(O[C@H](COS([O-])(=O)=O)[C@H](OS(=O)([O-])=O)[C@H](OC5(O[C@H](C(=O)[O-])[C@@H](O[R])[C@H](O)[C@H]5O))[C@@H](NC(C)=O)6))[C@H](O)[C@@H](O)7))8)" -"Chondroitin-D-glucuronates" "a β-D-glucuronate in [chondroitin sulfate]" ["a [chondroitin] containing β-D-glucuronate"] null null -1 "[C@@H]1(O[a chondroitin sulfate])([C@H](O)[C@H]([C@H](O[a chondroitin sulfate])[C@@H](C(=O)[O-])O1)O)" +"Chondroitin-D-glucuronates" "a [chondroitin] containing β-D-glucuronate" ["a β-D-glucuronate in [chondroitin sulfate]"] null null -1 "[C@@H]1(O[a chondroitin sulfate])([C@H](O)[C@H]([C@H](O[a chondroitin sulfate])[C@@H](C(=O)[O-])O1)O)" "Chondroitin-GalNAc-6S" "a [chondroitin-sulfate] containing 6-O-sulfo-N-acetylgalactosamine" ["chondroitin 6'-sulfate", "chondroitin-6-sulfate", "[chondroitin]-N-acetyl-galactosamine 6'-sulfate"] null null -5 "CC(=O)N[C@H]8([C@H](O[C@H]6([C@H](O)[C@@H](O)[C@H](O[C@@H]5([C@@H](NC(=O)C)[C@H](O[C@H]1([C@H](O)[C@@H](O)[C@@H](O[C@H](C(=O)[O-])1)O[C@@H]4([C@@H](O)[C@H](O[C@@H]3([C@@H](O)[C@H](O[C@H]2([C@H](O)[C@@H](O)[C@H](OC[C@H](N[a protein])C(=O)[a protein])OC2))O[C@H](CO)[C@H](O)3))O[C@H](CO)[C@H](O)4)))O[C@H](COS([O-])(=O)=O)[C@H](O)5))O[C@H](C(=O)[O-])6))O[C@H](COS([O-])(=O)=O)[C@H](O)[C@H](OC7(O[C@H](C(=O)[O-])[C@@H](O[R])[C@H](O)[C@H]7O))8)" "Chondroitin-N-acetyl-galactosamines" "a [chondroitin] containing N-acetyl-galactosamine-[core protein]" [] null null -2 "CC(=O)N[C@H]7([C@H](O[C@H]6([C@H](O)[C@@H](O)[C@H](O[C@@H]5([C@@H](NC(=O)C)[C@H](O[C@H]1([C@H](O)[C@@H](O)[C@@H](O[C@H](C(=O)[O-])1)O[C@@H]4([C@@H](O)[C@H](O[C@@H]3([C@@H](O)[C@H](O[C@H]2([C@H](O)[C@@H](O)[C@H](OC[C@H](N[a protein])C(=O)[a protein])OC2))O[C@H](CO)[C@H](O)3))O[C@H](CO)[C@H](O)4)))O[C@H](CO)[C@H](O)5))O[C@H](C(=O)[O-])6))O[C@H](CO)[C@H](O)[C@H](O[R])7)" "Chondroitin-Protein" "chondroitin-[core protein]" ["a 3-O-chondroitin-L-seryl-[protein]"] null null -3 "CC(=O)N[C@H]8([C@H](O[C@H]6([C@H](O)[C@@H](O)[C@H](O[C@@H]5([C@@H](NC(=O)C)[C@H](O[C@H]1([C@H](O)[C@@H](O)[C@@H](O[C@H](C(=O)[O-])1)O[C@@H]4([C@@H](O)[C@H](O[C@@H]3([C@@H](O)[C@H](O[C@H]2([C@H](O)[C@@H](O)[C@H](OC[C@H](N[a protein])C(=O)[a protein])OC2))O[C@H](CO)[C@H](O)3))O[C@H](CO)[C@H](O)4)))O[C@H](CO)[C@H](O)5))O[C@H](C(=O)[O-])6))O[C@H](CO)[C@H](O)[C@H](OC7(O[C@H](C(=O)[O-])[C@@H](O[R])[C@H](O)[C@H]7O))8)" @@ -1422,7 +1422,7 @@ "Chondroitin-Sulfate-D" "chondroitin sulfate D" [] null null -3 "CC(=O)N[C@H]2([C@H](O[R1])O[C@H](COS(=O)(=O)[O-])[C@H](O)[C@H](O[C@@H]1(O[C@H](C([O-])=O)[C@@H](O[R2])[C@H](O)[C@@H](OS(=O)(=O)[O-])1))2)" "Chondroitin-sulfate-disaccharides" "a chondroitin sulfate disaccharide" [] null null -1 "CC(=O)N[C@H]2(C(O)O[C@H](CO[R])[C@H](O[R])[C@H](O[C@@H]1(O[C@H](C([O-])=O)[C@@H](O)[C@H](O)[C@@H](O[R])1))2)" "Chondroitin-Sulfate-E" "chondroitin sulfate E" [] null null -3 "CC(=O)N[C@H]2([C@H](O[R1])O[C@H](COS(=O)(=O)[O-])[C@H](OS(=O)(=O)[O-])[C@H](O[C@@H]1(O[C@H](C([O-])=O)[C@@H](O[R2])[C@H](O)[C@@H](O)1))2)" -"Chondroitin-sulfate-GlcA2S" "a 2-O-sulfo-β-D-glucuronate in chondroitin-[core protein]" ["a [chondroitin-sulfate] containing 2-O-sulfo-β-D-glucuronate"] null null -5 "CC(=O)N[C@H]8([C@H](O[C@H]1([C@H](O)[C@@H](O)[C@@H](O[C@H](C(=O)[O-])1)O[C@@H]4([C@@H](O)[C@H](O[C@@H]3([C@@H](O)[C@H](O[C@H]2([C@H](O)[C@@H](O)[C@H](OC[C@H](N[a protein])C(=O)[a protein])OC2))O[C@H](CO)[C@H](O)3))O[C@H](CO)[C@H](O)4)))O[C@H](CO)[C@H](O)[C@H](O[C@@H]7(O[C@H](C(=O)[O-])[C@@H](O[C@@H]6(O[C@H](CO)[C@H](O)[C@H](OC5(O[C@H](C(=O)[O-])[C@@H](O[R])[C@H](O)[C@H]5OS(=O)([O-])=O))[C@@H](NC(C)=O)6))[C@H](O)[C@@H](OS(=O)([O-])=O)7))8)" +"Chondroitin-sulfate-GlcA2S" "a [chondroitin-sulfate] containing 2-O-sulfo-β-D-glucuronate" ["a 2-O-sulfo-β-D-glucuronate in chondroitin-[core protein]"] null null -5 "CC(=O)N[C@H]8([C@H](O[C@H]1([C@H](O)[C@@H](O)[C@@H](O[C@H](C(=O)[O-])1)O[C@@H]4([C@@H](O)[C@H](O[C@@H]3([C@@H](O)[C@H](O[C@H]2([C@H](O)[C@@H](O)[C@H](OC[C@H](N[a protein])C(=O)[a protein])OC2))O[C@H](CO)[C@H](O)3))O[C@H](CO)[C@H](O)4)))O[C@H](CO)[C@H](O)[C@H](O[C@@H]7(O[C@H](C(=O)[O-])[C@@H](O[C@@H]6(O[C@H](CO)[C@H](O)[C@H](OC5(O[C@H](C(=O)[O-])[C@@H](O[R])[C@H](O)[C@H]5OS(=O)([O-])=O))[C@@H](NC(C)=O)6))[C@H](O)[C@@H](OS(=O)([O-])=O)7))8)" "Chondroitin-sulfates" "a chondroitin sulfate" [] null null -1 "CC(=O)N[C@H]2([C@H](O[R1])O[C@H](CO[R3])[C@H](O[R3])[C@H](O[C@@H]1(O[C@H](C([O-])=O)[C@@H](O[R2])[C@H](O)[C@@H](O[R3])1))2)" "Chondroitins" "chondroitin" [] null null -2 "CC(=O)N[C@H]4([C@H](O[R1])O[C@H](CO)[C@H](O)[C@H](O[C@@H]3(O[C@H](C([O-])=O)[C@@H](O[C@@H]2(O[C@H](CO)[C@H](O)[C@H](O[C@@H]1(O[C@H](C([O-])=O)[C@@H](O[R2])[C@H](O)[C@@H](O)1))[C@@H](NC(C)=O)2))[C@H](O)[C@@H](O)3))4)" "CHORISMATE" "chorismate" ["chorismic acid"] "C10H8O6" 224.17 -2 "C=C(C(=O)[O-])O[C@H]1([C@H](O)\C=C/C(/C([O-])=O)=C\1)" @@ -1440,7 +1440,7 @@ "Cis-Delta-11-acyl-CoAs" "an (11Z)-enoyl-CoA" ["a cis Δ11 acyl-CoA"] null null -4 "C(\[R])=C\CCCCCCCCCC(SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(=O)(OP(=O)(OC[C@@H]1([C@@H](OP([O-])(=O)[O-])[C@@H](O)[C@@H](O1)n3(c2(c(c(N)ncn2)nc3))))[O-])[O-])=O" "CIS-DELTA3-ENOYL-COA" "a (3Z)-3-enoyl-CoA" ["a cis-Δ3-enoyl-CoA", "a cis-3-enoyl-CoA", "a (3Z)-alk-3-enoyl-CoA"] null null -4 "C(\[R])=C\CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(=O)(OP(=O)(OC[C@H]1(O[C@H]([C@@H]([C@@H]1OP([O-])(=O)[O-])O)n3(c2(c(c(N)ncn2)nc3))))[O-])[O-]" "CiS-POLYISOPRENYL-PP" "an all-cis polyisoprenyl diphosphate" [] null null 0 null -"Cis-Prenyl-tRNAs" "cis-hydroxy-prenyl-tRNA" ["tRNA containing N6-(cis-hydroxy)isopentenyladenosine"] null null -2 "CC(\CO)=C\CNc1(ncnc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))" +"Cis-Prenyl-tRNAs" "cis-hydroxy-prenyl-tRNA" ["tRNA containing N6-(cis-hydroxy)isopentenyladenosine"] null null -2 "CC(\CO)=C\CNc1(ncnc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))" "CIS-TRANS-POLYISOPRENYL-P" "a cis,trans-isoprenoid phosphate" ["a cis,trans-polyisoprenyln-P", "a cis,trans-polyisoprenyl phosphate"] null null 0 null "CIS-TRANS-POLYISOPRENYL-PP" "a cis,trans-polyisoprenyl diphosphate" ["a cis,trans-polyisoprenyln-PP"] null null 0 null "CIT" "citrate" ["citr", "cit", "citric acid", "2-hydroxy-1,2,3-propanetricarboxylic acid"] "C6H5O7" 189.101 -3 "C(=O)([O-])CC(C(=O)[O-])(O)CC(=O)[O-]" @@ -1489,7 +1489,7 @@ "COPROPORPHYRIN_III" "coproporphyrin III" [] "C36H34N4O8" 650.687 -4 "Cc3(c4(\C=C5(C(/C)=C(CCC([O-])=O)/C(\C=c1(c(CCC([O-])=O)c(C)c(\[nH]1)=C\C2(\C(/CCC(=O)[O-])=C(C)/C(/N=2)=C/c(c(CCC([O-])=O)3)[nH]4)))=N\5)))" "Core-Protein-L-Ser-Xyl" "a 3-O-(β-D-xylosyl)-L-seryl-[protein]" ["protein O-D-xyloside", "a core protein L-serine-β-D-xylose", "D-xylosylprotein", "O-β-D-xylosyl-[core protein]"] null null 0 "C([a protein])(=O)[C@@H](N[a protein])CO[C@@H]1(OC[C@@H](O)[C@H](O)[C@@H](O)1)" "Core1" "core 1" ["β-D-galactosyl-1,3-N-acetyl-α-D-galactosaminyl-R", "glycoprotein D-galactosyl-1,3-N-acetyl-α-D-galactosamine", "β-D-galactosyl-1,3-N-acetyl-D-galactosaminyl-R", "β-D-galactosyl-(1→3)-N-acetyl-α-D-galactosaminyl-L-seryl/L-threonyl-[protein]", "T antigen"] null null 0 "CC(=O)N[C@@H]2([C@@H](O[C@@H]1(O[C@H](CO)[C@H](O)[C@H](O)[C@@H](O)1))[C@@H](O)[C@@H](CO)O[C@@H]2OC([R])[C@@H](C(=O)[a protein])N[a protein])" -"Corphins" "a corphin" [] null null 0 null +"Corphins" "a corphin" [] "C20H18N4" null 0 "C4(\CC3(/C=C5(CCC(/C=c1(ccc(\[nH]1)=C\C2(/CCC(\N=2)=C\C(\N=3)=4)))=N\5)))" "Corrinoids" "a corrinoid" [] null null 0 null "Corrins" "a corrin" ["corrinoid"] null null 0 "C1(C3(\N=C(C([R])([R])1)C(/[R])=C2(C([R])([R])C([R])([R])C([R])(N2)C5([R])(C([R])([R])C(C(C(/[R])=C4(C([R])([R])C(C(C(/[R])=3)=N4)([R])[R]))=N5)([R])[R]))))([R])([R])" "CORTISOL" "cortisol" ["11β-cortisol", "hydrocortisone"] "C21H30O5" 362.465 0 "C[C@@]34([C@H]2([C@@H](O)C[C@@]1(C)([C@@H](CC[C@@](C(=O)CO)(O)1)[C@@H]2CCC/3=C\C(=O)CC4)))" @@ -1539,7 +1539,7 @@ "CPD-10726" "β-D-fructopyranose" [] "C6H12O6" 180.157 0 "C(O)[C@@]1(O)(OC[C@@H](O)[C@@H](O)[C@H](O)1)" "CPD-10734" "3-deoxy-D-glycero-D-galacto-non-2-ulopyranosonate" ["3-deoxy-D-glycero-D-galacto-nononic acid", "3-deoxy-D-glycero-D-galacto-non-2-ulopyranosonic acid", "3-deoxy-D-glycero-D-galacto-nonulosonic acid", "3-deoxy-D-glycero-D-galacto-nonulosonate", "3-deoxy-D-glycero-D-galacto-nononate"] "C9H15O9" 267.212 -1 "C(O)[C@@H](O)[C@H]([C@@H]1(OC(C([O-])=O)(O)C[C@@H]([C@H]1O)O))O" "CPD-10773" "(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one" ["(R)-DHMF"] "C5H8O4" 132.116 0 "C[C@@]1(O)(OC[C@H](O)C(=O)1)" -"CPD-10774" "(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran" ["(R)-THMF", "AI-2 (salmonella)", "autoinducer 2 (salmonella)"] "C5H10O5" 150.131 0 "C[C@@]1(O)(OC[C@H](O)[C@@](O)(O)1)" +"CPD-10774" "autoinducer 2" ["(R)-THMF", "AI-2", "(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran"] "C5H10O5" 150.131 0 "C[C@@]1(O)(OC[C@H](O)[C@@](O)(O)1)" "CPD-10775" "(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one" ["Pro-AI-2 (vibrio)", "(S)-DHMF"] "C5H8O4" 132.116 0 "C[C@]1(O)(OC[C@H](O)C(=O)1)" "CPD-10776" "(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran" ["AI-2 precursor", "(S)-THMF", "Pro-AI-2 (vibrio)"] "C5H10O5" 150.131 0 "C[C@]1(O)(OC[C@H](O)[C@@](O)(O)1)" "CPD-10796" "2,3-dihydroxy-trans-cinnamate" ["2,3-dihydroxycinnamic acid", "(2E)-3-(2,3-dihydroxyphenyl)prop-2-enoate"] "C9H7O4" 179.152 -1 "C(/C=C/c1(c(O)c(O)ccc1))(=O)[O-]" @@ -1579,11 +1579,11 @@ "CPD-11455" "oscillaxanthin" [] "C52H76O14" 925.164 0 "CC(/C=C/C=C(C)/C=C/C=C(C)/C=C/[C@@H](OC1([C@@H](O)[C@H](O)[C@@H](O)[C@H](CO)O1))C(O)(C)C)=C\C=C\C=C(C)\C=C\C=C(C)\C=C\C=C(C)\C=C\[C@@H](OC2(O[C@@H](CO)[C@H](O)[C@@H](O)[C@H](O)2))C(O)(C)C" "CPD-11473" "astaxanthin" [] "C40H52O4" 596.848 0 "CC(/C=C/C=C(C)/C=C/C1(/C(CC(C(C(/C)=1)=O)O)(C)C))=C\C=C\C=C(C)\C=C\C=C(C)\C=C\C2(\C(CC(C(C(/C)=2)=O)O)(C)C)" "CPD-11500" "a [protein] 4-carboxy-L-glutamate" ["peptidyl 4-carboxyglutamate"] null null -2 "C(=O)([O-])C(C(=O)[O-])C[C@@H](C([a protein])=O)N[a protein]" -"CPD-11501" "a vitamin K" [] null null 0 "Cc2(c([R])c(c1(ccccc1c2=O))=O)" +"CPD-11501" "a K vitamin" ["a vitamin K"] null null 0 "Cc2(c([R])c(c1(ccccc1c2=O))=O)" "CPD-11512" "a (2R,3S,4S)-leucoanthocyanidin" ["a flavan-3,4 -diol"] null null 0 "c1([R3])(c([R2])c([R1])c(c([R5])c([R4])1)[C@@H]2([C@@H](O)[C@@H](O)c3(c(O2)c([R9])c([R8])c([R7])c([R6])3)))" -"CPD-11551" "β-L-aspartylhydroxamate" [] "C4H8N2O4" 148.118 0 "C(=O)([O-])[C@@H]([NH3+])CC(NO)=O" -"CPD-11592" "2-(methylsulfanyl)-N6-prenyladenosine37 in tRNA" ["tRNA-(2-methylsulfanyl-N6-dimethylallyladenosine37)", "a tRNA containing 2-methylsulfanyl-N6-dimethylallyladenosine37", "2-methylthio-N6-dimethylallyladenosine37 in tRNA", "ms2i6A37", "tRNA 2-(methylsulfanyl)-N6-isopentenyl adenosine37", "2-(methylsulfanyl)-N6-dimethylallyladenosine37 in tRNA", "N6-(3-methylbut-2-en-1-yl)-2-(methylsulfanyl)adenosine37 in tRNA"] null null -2 "CC(C)=CCNc1(nc(SC)nc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))" -"CPD-11593" "2-(methylsulfanyl)-N6-[(2Z)-5-hydroxy-3-methylbut-2-en-1-yl]-adenosine37 in tRNA" ["2-methylthio-cis-ribozeatin", "ms2io6A37", "2-(methylsulfanyl)-6-(5-hydroxydimethylallyl)-adenosine37 in tRNA", "2-(methylsulfanyl)-N6-(5-hydroxydimethylallyl)-adenosine37 in tRNA"] null null -2 "CC(\CO)=C\CNc1(nc(SC)nc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))" +"CPD-11551" "L-aspartate β-hydroxamate" ["β-L-aspartylhydroxamate"] "C4H8N2O4" 148.118 0 "C(=O)([O-])[C@@H]([NH3+])CC(NO)=O" +"CPD-11592" "2-(methylsulfanyl)-N6-prenyladenosine37 in tRNA" ["tRNA-(2-methylsulfanyl-N6-dimethylallyladenosine37)", "a tRNA containing 2-methylsulfanyl-N6-dimethylallyladenosine37", "2-methylthio-N6-dimethylallyladenosine37 in tRNA", "ms2i6A37", "tRNA 2-(methylsulfanyl)-N6-isopentenyl adenosine37", "2-(methylsulfanyl)-N6-dimethylallyladenosine37 in tRNA", "N6-(3-methylbut-2-en-1-yl)-2-(methylsulfanyl)adenosine37 in tRNA"] null null -2 "CC(C)=CCNc1(nc(SC)nc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))" +"CPD-11593" "2-(methylsulfanyl)-N6-[(2Z)-5-hydroxy-3-methylbut-2-en-1-yl]-adenosine37 in tRNA" ["2-methylthio-cis-ribozeatin", "ms2io6A37", "2-(methylsulfanyl)-6-(5-hydroxydimethylallyl)-adenosine37 in tRNA", "2-(methylsulfanyl)-N6-(5-hydroxydimethylallyl)-adenosine37 in tRNA"] null null -2 "CC(\CO)=C\CNc1(nc(SC)nc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))" "CPD-1162" "arbutin 6-phosphate" ["arbutin-6-p", "arbutin-6P"] "C12H15O10P" 350.218 -2 "C(OP(=O)([O-])[O-])[C@H]2(O[C@@H](Oc1(ccc(O)cc1))[C@H](O)[C@@H](O)[C@H](O)2)" "CPD-11620" "(S)-piperidine-2-carboxamide" [] "C6H13N2O" 129.181 1 "C1(CCC[C@@H](C(N)=O)[NH2+]1)" "CPD-11626" "(R,S)-piperidine-3-carboxamide" [] "C6H12N2O" 128.174 0 "C1(CCC(C(N)=O)CN1)" @@ -1680,7 +1680,7 @@ "CPD-12773" "α-D-Glc-PP-Und" ["α-D-glucose-diphosphoundecaprenol", "α-D-glucosyl-diphosphoundecaprenol", "undecaprenol-diphosphate-glucose", "α-D-glucopyranosyl-diphosphoundecaprenol"] "C61H100O12P2" 1087.401 -2 "C\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC/C=C(C)/CC/C=C(C)/CC/C=C(C)/COP(=O)([O-])OP(=O)([O-])O[C@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](O)1)" "CPD-12792" "Reactive blue 5" ["1-amino-4-{[3-({4-chloro-6-[(3-sulfophenyl)amino]-1,3,5-triazin-2-yl}amino)-4-sulfophenyl]amino}-9,10-dihydro-9,10-dioxoanthracene-2-sulfonic acid"] "C29H21N7O11S3Cl" 775.158 -3 "c6(Cl)(nc(Nc1(cccc(S([O-])(=O)=O)c1))nc(Nc5(c(S([O-])(=O)=O)ccc(Nc2(c3(c(c(N)c(S([O-])(=O)=O)c2)C(O)c4(c(C(O)3)cccc4))))c5))n6)" "CPD-12795" "Reactive blue 19" ["Remazol brilliant blue R"] "C22H16N2O11S3" 580.555 -2 "C(OS(=O)(=O)[O-])CS(c1(cc(ccc1)Nc2(cc(S([O-])(=O)=O)c(N)c3(c2c(=O)c4(c(c(=O)3)cccc4)))))(=O)=O" -"CPD-12796" "2,2'-azino-bis-(3-ethylbenzothiazoline-6-sulfonate)" ["ABTS", "2,2'-azino-di-(3-ethylbenzothiazoline-6-sulfonate)", "2,2'-azino-di-(3-ethylbenzothiazoline)-6-sulfonic acid"] "C18H16N4O6S4" 512.588 -2 "CCN2(C(\Sc1(cc(ccc12)S(=O)(=O)[O-]))=N\N=C4(N(CC)c3(ccc(cc3S4)S(=O)(=O)[O-])))" +"CPD-12796" "2,2'-azino-bis-(3-ethylbenzothiazoline-6-sulfonate)" ["2,2'-azino-di-(3-ethylbenzothiazoline-6-sulfonate)", "2,2'-azino-di-(3-ethylbenzothiazoline)-6-sulfonic acid"] "C18H16N4O6S4" 512.588 -2 "CCN2(C(\Sc1(cc(ccc12)S(=O)(=O)[O-]))=N\N=C4(N(CC)c3(ccc(cc3S4)S(=O)(=O)[O-])))" "CPD-12797" "2,6-dimethoxyphenol" ["DMP", "1,3-di-O-methylpyrogallol", "1,3-dimethoxy-2-hydroxybenzene", "1,3-dimethyl pyrogallate", "2-hydroxy-1,3-dimethoxybenzene", "pyrogallol 1,3-dimethyl ether"] "C8H10O3" 154.165 0 "COc1(c(O)c(OC)ccc1)" "CPD-12799" "hypochlorous acid" ["HClO", "HOCl", "hypochloric acid"] "HOCl" 52.46 0 "ClO" "CPD-12800" "hypochlorite" [] "OCl" 51.452 -1 "Cl[O-]" @@ -1850,7 +1850,7 @@ "CPD-15326" "2-oxo-4-phenylbutanoate" ["2-oxo-4-phenylbutyrate"] "C10H9O3" 177.179 -1 "C(=O)([O-])C(=O)CCc1(ccccc1)" "CPD-15332" "9H-purine-2,6,8-triol" ["urate", "uric acid"] "C5H4N4O3" 168.112 0 "c12(nc(O)[nH]c1c(O)nc(O)n2)" "CPD-15358" "N-(2,3-dihydroxybenzoyl)-L-serine dimer" ["(2,3-dihydroxybenzoylserine)2", "O-3-[N-(2,3-dihydroxybenzoyl)-L-seryl]-N-(2,3-dihydroxybenzoyl)-L-serine"] "C20H19N2O11" 463.377 -1 "c1(cc(O)c(O)c(c1)C(=O)N[C@@H](CO)C(OC[C@H](NC(=O)c2(cccc(O)c(O)2))C([O-])=O)=O)" -"CPD-15360" "N6-(3-methylbut-2-en-1-yl)-2-thioadenosine37 in tRNA" ["tRNA-(2-thio-N6-dimethylallyladenosine37)", "a tRNA containing 2-thio-N6-dimethylallyladenosine37", "2-thio-N6-dimethylallyladenosine37 in tRNA", "2-sulfanyl-N6-dimethylallyladenosine37 in tRNA"] null null -2 "CC(C)=CCNc1(nc(S)nc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))" +"CPD-15360" "N6-(3-methylbut-2-en-1-yl)-2-thioadenosine37 in tRNA" ["tRNA-(2-thio-N6-dimethylallyladenosine37)", "a tRNA containing 2-thio-N6-dimethylallyladenosine37", "2-thio-N6-dimethylallyladenosine37 in tRNA", "2-sulfanyl-N6-dimethylallyladenosine37 in tRNA"] null null -2 "CC(C)=CCNc1(nc(S)nc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))" "CPD-15373" "aldehydo-D-mannose" [] "C6H12O6" 180.157 0 "C(=O)[C@@H](O)[C@@H](O)[C@H](O)[C@H](O)CO" "CPD-15374" "aldehydo-D-glucose" ["(2R,3S,4R,5R)-2,3,4,5,6-pentahydroxyhexanal", "linear D-glucose"] "C6H12O6" 180.157 0 "C(=O)[C@@H]([C@H]([C@@H]([C@@H](CO)O)O)O)O" "CPD-15377" "aldehydo-D-xylose" ["linear D-xylose"] "C5H10O5" 150.131 0 "C(=O)[C@H](O)[C@@H](O)[C@H](O)CO" @@ -1899,11 +1899,11 @@ "CPD-15861" "a holo malonate-decarboxylase" [] null null -3 "CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@@H]2([C@@H](O)[C@@H](O[C@@H]1([C@H](O)[C@H](O)[C@@H](COP(=O)([O-])OC[C@H](N[[an apo malonate decarboxylase acyl-carrier protein]])C(=O)[[an apo malonate decarboxylase acyl-carrier protein]])O1))[C@@H](O2)n4(cnc3(c(N)ncnc34))))[C@@H](O)C(=O)NCCC(=O)NCCS" "CPD-15867" "L-lyxopyranose" [] "C5H10O5" 150.131 0 "C1(OC(O)[C@H](O)[C@H](O)[C@@H](O)1)" "CPD-15868" "aldehydo-L-lyxose" [] "C5H10O5" 150.131 0 "C(=O)[C@H](O)[C@H](O)[C@@H](O)CO" -"CPD-15870" "MoO2(OH)-molybdopterin cofactor" ["MoO2(OH)Dtpp-mP", "MoO2(OH)-MPT", "MoCo (dioxyo)", "molybdenum cofactor (dioxyo)"] "C10H11N5O9PS2Mo" 536.259 -3 "C(OP([O-])(=O)[O-])[C@@H]1(C4(\S[Mo-](=O)(=O)(O)SC(/[C@H]2([C@@H](O1)Nc3(c(N2)c(=O)[nH]c(N)n3)))=4))" -"CPD-15871" "MoO2(S)-molybdopterin cofactor" ["MoOOSDtpp-mP", "molybdenum cofactor (xanthine dehydrogenase)", "sulfurated eukaryotic molybdenum cofactor", "Mo(=O)2(=S)-molybdopterin cofactor"] "C10H11N5O8PS3Mo" 552.319 -3 "C(OP([O-])(=O)[O-])[C@@H]1(C4(\S[Mo-](=S)(O)(=O)SC(/[C@H]2([C@@H](O1)Nc3(c(N2)c(=O)[nH]c(N)n3)))=4))" +"CPD-15870" "MoO2(OH)-molybdopterin cofactor" ["MoO2(OH)Dtpp-mP", "MoO2(OH)-MPT", "MoCo (dioxyo)", "molybdenum cofactor (dioxyo)"] "C10H10N5O9PS2Mo" 535.25104 -4 "C(OP([O-])(=O)[O-])[C@@H]1(C4(\S[Mo-](=O)(=O)([O-])SC(/[C@H]2([C@@H](O1)Nc3(c(N2)c(=O)[nH]c(N)n3)))=4))" +"CPD-15871" "MoO2(S)-molybdopterin cofactor" ["MoOOSDtpp-mP", "molybdenum cofactor (xanthine dehydrogenase)", "sulfurated eukaryotic molybdenum cofactor", "Mo(=O)2(=S)-molybdopterin cofactor"] "C10H10N5O8PS3Mo" 551.31104 -4 "C(OP([O-])(=O)[O-])[C@@H]1(C4(\S[Mo-](=S)([O-])(=O)SC(/[C@H]2([C@@H](O1)Nc3(c(N2)c(=O)[nH]c(N)n3)))=4))" "CPD-15873" "bis(guanylyl molybdopterin) cofactor" ["bis(molybdopterin guanine dinucleotide)molybdenum cofactor", "Mo(Dtpp-mGDP)2", "bis-MGD", "bis(molybdopterin guanine dinucleotide)molybdenum", "molybdo-bis(pyranopterin guanine dinucleotide)", "mo-bis(molybdopterin guanine dinucleotide)", "Mo-bisPGD", "Mo-bis(pyranopterin guanosine dinucleotide)"] "C40H44N20O27P4S4Mo" 1584.98 -4 "C(OP([O-])(=O)OP([O-])(=O)OC[C@H]8(O[C@H]%10(Nc%11(nc(N)[nH]c(=O)c(N[C@@H](C9(\S[Mo]4(=O)(SC5(/[C@@H](COP([O-])(=O)OP(=O)([O-])OC[C@@H]1([C@@H](O)[C@@H](O)[C@@H](O1)n2(cnc3(c(=O)[nH]c(N)nc23))))O[C@@H]6([C@H](C(\S4)=5)Nc7(c(=O)[nH]c(N)nc(N6)7))))SC\8=9))%10)%11))))[C@@H]%12([C@@H](O)[C@@H](O)[C@@H](O%12)n%13(cnc%14(c%13nc(N)[nH]c(=O)%14)))" "CPD-15874" "bis(molybdenum cofactor)" ["bis(molybdopterin)molybdenum cofactor", "bis-MPT", "bis(molybdopterin)molybdenum", "bis-Mo-MPT"] "C20H20N10O13P2S4Mo" 894.565 -4 "C([C@H]5(O[C@H]7(Nc8(nc(N)[nH]c(=O)c(N[C@@H](C6(\S[Mo]1(=O)(SC2(/[C@@H](COP(=O)([O-])[O-])O[C@@H]3([C@H](C(\S1)=2)Nc4(c(=O)[nH]c(N)nc(N3)4))))SC\5=6))7)8))))OP([O-])(=O)[O-]" -"CPD-15878" "membrane protein integrase" ["MPIase", "N-acetyl-α-D-fucosyl-(1→4)-N-acetyl-β-D-mannosaminouronyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphosphate-diacylglycerol", "ManNAcA-GlcNAc-Fuc4NAc-diphosphate diacylglycerol"] null null -3 "C[C@H]3(O[C@H](O[C@H]1([C@H](O)[C@H](NC(C)=O)[C@@H](O[C@H](C(=O)[O-])1)O[C@H]2([C@H](O)[C@@H](NC(C)=O)[C@@H](OP(OP([O-])(=O)OC[C@H](COC([R1])=O)OC(=O)[R2])([O-])=O)O[C@H](CO)2)))[C@H](O)[C@@H](O)[C@@H](NC(C)=O)3)" +"CPD-15878" "membrane protein integrase" ["MPIase", "N-acetyl-α-D-fucosyl-(1→4)-N-acetyl-β-D-mannosaminouronyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphosphate-diacylglycerol", "ManNAcA-GlcNAc-Fuc4NAc-diphosphate diacylglycerol"] null null -3 "C[C@H]3(O[C@H](O[C@H]1([C@H](O)[C@H](NC(C)=O)[C@@H](O[C@H](C(=O)[O-])1)O[C@H]2([C@H](O)[C@@H](NC(C)=O)[C@@H](OP(OP([O-])(=O)OC[C@H](COC([R1])=O)OC(=O)[R2])([O-])=O)O[C@H](CO)2)))[C@H](O)[C@@H](O[R])[C@@H](NC(C)=O)3)" "CPD-15893" "reduced methyl viologen" [] "C12H16N2" 188.272 0 "CN2(\C=C/C(C1(\C=C/N(C)\C=C/1))\C=C/2)" "CPD-15895" "aldehydo-D-ribose 5-phosphate" ["keto-D-ribose 5-phosphate"] "C5H9O8P" 228.095 -2 "C(=O)[C@H](O)[C@H](O)[C@@H](COP([O-])([O-])=O)O" "CPD-15909" "aurachin D" [] "C25H33NO" 363.542 0 "CC(C)=CCCC(\C)=C/CCC(\C)=C/Cc2(c(c1(ccccc1[nH]c(C)2))=O)" @@ -1954,7 +1954,7 @@ "CPD-16567" "L-rhamnulofuranose" [] "C6H12O5" 164.158 0 "C[C@@H]1(OC(CO)(O)[C@H](O)[C@@H](O)1)" "CPD-16569" "kojibiose" ["2-α-D-glucosyl-D-glucose", "α-D-glucopyranosyl-(1->2)-D-glucopyranose"] "C12H22O11" 342.299 0 "C(O)[C@H]2(OC(O)[C@H](O[C@@H]1([C@H](O)[C@H]([C@H](O)[C@@H](CO)O1)O))[C@@H](O)[C@H](O)2)" "CPD-16577" "β-glucose 1,6-bisphosphate" ["β-glucose-1,6-diphosphate", "β-D-glucose 1,6-P2", "β-D-glucopyranose 1,6-bisphosphate"] "C6H10O12P2" 336.085 -4 "C(OP([O-])(=O)[O-])[C@H]1(O[C@H]([C@@H]([C@H]([C@@H]1O)O)O)OP(=O)([O-])[O-])" -"CPD-166" "a dolichyl β-D-glucosyl phosphate" [] "C86H142O9P" 1351.036 -1 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(CCOP(O[C@H]1([C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O))([O-])=O)C" +"CPD-166" "a dolichyl β-D-glucosyl phosphate" [] null null -1 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/[R]CC(/C)=C/CCC(CCOP(O[C@H]1([C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O))([O-])=O)C" "CPD-16617" "pantethine" [] "C22H42N4O8S2" 554.716 0 "CC(CO)(C)[C@@H](O)C(NCCC(=O)NCCSSCCNC(=O)CCNC(=O)[C@H](O)C(CO)(C)C)=O" "CPD-16618" "L-malic semialdehyde" ["(3R)-3-hydroxy-4-oxobutanoate"] "C4H5O4" 117.081 -1 "C(C(=O)[O-])[C@@H](O)C=O" "CPD-16619" "methyl α-D-glucoside 6-phosphate" ["methyl α-D-glucopyranoside 6-phosphate", "αMG6P"] "C7H13O9P" 272.148 -2 "CO[C@@H]1([C@@H]([C@H]([C@@H]([C@H](O1)COP([O-])([O-])=O)O)O)O)" @@ -1975,7 +1975,7 @@ "CPD-17063" "ferroheme o" [] "C49H56N4O5Fe" 836.852 -2 "C=CC3(\C8(\[N+]4(\[Fe-2]16([N+]5(\C(/C(\CCC(=O)[O-])=C(C)\C(/C=c2(c(C)c([C@@H](O)CC/C=C(C)/CC/C=C(C)/CCC=C(C)C)c(\n12)=C\C(\C(/C)=3)=4))=5)=C/c7(n6c(c(C)c(CCC(=O)[O-])7)\C=8))))))" "CPD-17082" "iron(III)-[N-(2,3-dihydroxybenzoyl)-L-serine] complex" ["ferric 2,3-dihydroxybenzoylserine", "ferric dihydroxybenzoylserine", "dihydroxybenzoylserine-iron", "Fe3+-[N-(2,3-dihydroxybenzoyl)-L-serine] complex"] "C10H8NO6Fe" 294.023 0 "c2(cc1(O[Fe+]Oc1c(c2)C(=O)N[C@@H](CO)C(=O)[O-]))" "CPD-17087" "1,2-dimyristoyl-phosphatidyl-ethanolamine" ["phosphatidylethanolamine (ditetradecanoyl, n-C14:0)"] "C33H66NO8P" 635.86 0 "CCCCCCCCCCCCCC(=O)OC[C@@H](OC(=O)CCCCCCCCCCCCC)COP(OCC[NH3+])([O-])=O" -"CPD-171" "a dolichyl β-D-mannosyl phosphate" ["dolichol monophosphate mannose", "β-D-mannopyranose, 1-ester with dolichol dihydrogen phosphate", "D-mannose, ester with dolichol dihydrogen phosphate", "mannosyl phosphoryl dolichol", "mannolipid", "dolichyl mannosyl phosphate", "dolichyl mannopyranosyl phosphate", "dolichyl phosphate D-mannose", "dolichyl D-mannosyl phosphate"] "C86H142O9P" 1351.036 -1 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(CCOP(=O)([O-])O[C@@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@H](O)1))C" +"CPD-171" "a dolichyl β-D-mannosyl phosphate" ["dolichol monophosphate mannose", "β-D-mannopyranose, 1-ester with dolichol dihydrogen phosphate", "D-mannose, ester with dolichol dihydrogen phosphate", "mannosyl phosphoryl dolichol", "mannolipid", "dolichyl mannosyl phosphate", "dolichyl mannopyranosyl phosphate", "dolichyl phosphate D-mannose", "dolichyl D-mannosyl phosphate"] null null -1 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/[R]CC(/C)=C/CCC(CCOP(=O)([O-])O[C@@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@H](O)1))C" "CPD-17157" "L-galactono-1,5-lactone" [] "C6H10O6" 178.141 0 "C(O)[C@H]1([C@@H](O)[C@@H](O)[C@H](O)C(=O)O1)" "CPD-17189" "Coα-[α-(adenin-7-yl)]-Coβ-adenosylcobamide" ["pseudoAdoCba", "pseudo-adenosyl cobamide", "pseudocoenzyme B12", "pseudocobalamin"] "C68H95N21O17PCo" 1568.533 0 "C[C@H]4(OP([O-])(=O)O[C@H]1([C@@H](O)[C@H](O[C@H](CO)1)n3(c2(c(N)ncnc2[n+](c3)[Co-3]79%10([N+]%12(/[C@]5(C)([C@@](C)(CC(N)=O)[C@H](CCC(=O)N)C(\C(/C)=C%11([C@@](CC(=O)N)([C@H](CCC(N)=O)C(\C=C8(C(C)(C)[C@H](CCC(N)=O)C(\C(/C)=C6([C@@](CCC(NC4)=O)([C@@H](CC(N)=O)[C@H]5N67)C))=[N+]8\9))=[N+]%10%11)C))=%12)))(C[C@@H]%13([C@H]([C@@H](O)[C@@H](O%13)n%14(cnc%15(c%14ncnc%15N)))O))))))" "CPD-17278" "a [glycerolipid]-stearidonate" ["a [glycerolipid]-(6Z,9Z,12Z,15Z)-octadecatetraenoate"] null null 0 "CC\C=C/C\C=C/C\C=C/C\C=C/CCCCC(=O)[a glycerolipid]" @@ -2043,7 +2043,7 @@ "CPD-17968" "a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide" [] null null -4 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(OP(O[C@H]2(O[C@H](CO)[C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O[R])[C@H](O)[C@@H](NC(=O)C)1))[C@H](O[C@@H](C(=O)N[C@@H](C)C(N[C@H](CCC(=O)N[C@@H](CCC[C@H](C(=O)[O-])[NH3+])C([O-])=O)C(=O)[O-])=O)C)[C@@H](NC(=O)C)2))([O-])=O)(=O)[O-]" "CPD-17969" "a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide" [] null null -4 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(OP(O[C@H]2(O[C@H](CO)[C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O[R])[C@H](O)[C@@H](NC(=O)C)1))[C@H](O[C@@H](C(=O)N[C@@H](C)C(N[C@H](CCC(=O)N[C@@H](CCC[C@H](C(=O)[O-])[NH3+])C(NCC(=O)[O-])=O)C(=O)[O-])=O)C)[C@@H](NC(=O)C)2))([O-])=O)(=O)[O-]" "CPD-17985" "a mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine) pentapeptide" ["GlcNAc-1,6-anhydro-MurNAc-pentapeptide", "GlcNAc-1,6-anhydro-MurNAc-(L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine) pentapeptide"] null null -2 "C[C@H](C(=O)N[C@H](C)C(=O)[O-])NC(=O)[C@H](CCC[C@H](C(=O)[O-])[NH3+])NC(=O)CC[C@@H](NC(=O)[C@@H](NC([C@H](O[C@@H]2([C@@H](NC(=O)C)C3(OCC([C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O[R])[C@H](O)[C@@H](NC(=O)C)1))2)O3)))C)=O)C)C(=O)[O-]" -"CPD-17986" "a mature peptidoglycan (with L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine tetrapeptide)" ["a mature peptidoglycan strand with 1,6-anhydro-MurNAc terminus", "GlcNAc-1,6-anhydro-MurNAc-tetrapeptide", "GlcNAc-1,6-anhydro-MurNAc-(L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide"] null null -2 "C[C@H](NC([C@H](O[C@@H]2([C@@H](NC(=O)C)C3(OCC([C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O[R])[C@H](O)[C@@H](NC(=O)C)1))2)O3)))C)=O)C(N[C@H](CCC(=O)N[C@@H](CCC[C@H](C(=O)[O-])[NH3+])C(N[C@H](C)C(=O)[O-])=O)C(=O)[O-])=O" +"CPD-17986" "GlcNAc-1,6-anhydro-MurNAc-(L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide" ["a mature peptidoglycan strand with 1,6-anhydro-MurNAc terminus", "GlcNAc-1,6-anhydro-MurNAc-tetrapeptide"] null null -2 "C[C@H](NC([C@H](O[C@@H]2([C@@H](NC(=O)C)C3(OCC([C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O[R])[C@H](O)[C@@H](NC(=O)C)1))2)O3)))C)=O)C(N[C@H](CCC(=O)N[C@@H](CCC[C@H](C(=O)[O-])[NH3+])C(N[C@H](C)C(=O)[O-])=O)C(=O)[O-])=O" "CPD-17987" "a mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide" ["GlcNAc-1,6-anhydro-MurNAc-tripeptide", "GlcNAc-1,6-anhydro-MurNAc- (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide"] null null -2 "C[C@H](NC([C@H](O[C@@H]2([C@@H](NC(=O)C)C3(OCC([C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O[R])[C@H](O)[C@@H](NC(=O)C)1))2)O3)))C)=O)C(N[C@H](CCC(=O)N[C@@H](CCC[C@H](C(=O)[O-])[NH3+])C([O-])=O)C(=O)[O-])=O" "CPD-17988" "a mature peptidoglycan with L,D cross-links (meso-diaminopimelate containing)" [] null null -4 "C[C@H](NC([C@H](O[C@@H]2([C@@H](NC(=O)C)[C@H](O[R3])O[C@H](CO)[C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O[R2])[C@H](O)[C@@H](NC(=O)C)1))2))C)=O)C(N[C@H](CCC(=O)N[C@@H](CCC[C@@H](NC(=O)[C@H](CCC[C@H](C(=O)[O-])[NH3+])NC(=O)CC[C@@H](NC(=O)[C@@H](NC([C@H](O[C@@H]4([C@@H](NC(=O)C)C5(OCC([C@@H](O[C@@H]3(O[C@H](CO)[C@@H](O[R1])[C@H](O)[C@@H](NC(=O)C)3))4)O5)))C)=O)C)C(=O)[O-])C(=O)[O-])C(N[C@H](C)C(=O)[O-])=O)C(=O)[O-])=O" "CPD-17989" "a mature peptidoglycan (meso-DAP containing)" [] null null -4 "C[C@H](NC([C@H](O[C@@H]4([C@@H](NC(=O)C)C5(OCC([C@@H](O[C@@H]3(O[C@H](CO)[C@@H](O[C@@H]2(O[C@H](CO)[C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O[R])[C@H](O)[C@@H](NC(=O)C)1))[C@H](O[C@@H](C(=O)N[C@@H](C)C(N[C@H](CCC(=O)N[C@@H](CCC[C@H](C(=O)[O-])[NH3+])C(N[C@H](C)C(=O)[O-])=O)C(=O)[O-])=O)C)[C@H]2NC(=O)C))[C@H](O)[C@@H](NC(=O)C)3))4)O5)))C)=O)C(N[C@H](CCC(=O)N[C@@H](CCC[C@H](C(=O)[O-])[NH3+])C(N[C@H](C)C(=O)[O-])=O)C(=O)[O-])=O" @@ -2130,7 +2130,7 @@ "CPD-18602" "a pentaacyltrehalose" ["polyacyltrehalose", "PAT"] null null 0 "C([C@H]1(O[C@@H]([C@@H]([C@H]([C@@H]1OC(=O)[R2])O)OC(=O)[R1])O[C@@H]2([C@@H]([C@H]([C@@H]([C@H](O2)COC(=O)[R5])O)OC(=O)[R4])OC(=O)[R3])))O" "CPD-18607" "a β-D-mannosyl phosphomycoketide" [] null null -1 "C([R])CCCC[C@H](C)CCC[C@H](C)CCC[C@H](C)CCC[C@H](C)CCC[C@H](C)CCCOP([O-])(=O)O[C@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@H](O)1)" "CPD-18612" "a dimycocerosyl phthiocerol" ["DIM A"] null null 0 "C(CCCCCCCCCCCC[C@@H]([R4])C[C@@H](C)C[C@@H](C)C[C@@H](C)C(O[C@H](CCCCCCCCCCCCCCC[R2])C[C@H](OC(=O)[C@H](C)C[C@H](C)C[C@H](C)C[C@H]([R3])CCCCCCCCCCCCC[R5])CCCC[C@H](C)[C@H](OC)C[R1])=O)[R6]" -"CPD-18648" "L-glutamate γ-monohydroxamate" ["L-glutamic acid gamma-monohydroxamate", "L-5-N-hydroxyglutamine"] "C5H10N2O4" 162.145 0 "C(NO)(CC[C@@H](C(=O)[O-])[NH3+])=O" +"CPD-18648" "L-glutamate γ-hydroxamate" ["L-glutamic acid γ-hydroxamic acid", "L-γ-glutamyl hydroxamate", "glutamyl-γ-hydroxamate", "glutamic acid γ-monohydroxamate", "glutamate-γ-hydroxamic acid", "glutamate-γ-hydroxamate", "γ-glutamyl hydroxamate", "glutamine hydroxamate", "L-glutamic acid gamma-monohydroxamate", "L-5-N-hydroxyglutamine", "L-glutamate γ-monohydroxamate"] "C5H10N2O4" 162.145 0 "C(NO)(CC[C@@H](C(=O)[O-])[NH3+])=O" "CPD-18649" "L-glutamate γ-methyl ester" ["5-methyl L-glutamate", "glutamic acid, 5-methylester"] "C6H11NO4" 161.157 0 "COC(CC[C@@H](C(=O)[O-])[NH3+])=O" "CPD-18651" "a dimycocerosyl phthiodiolone" ["DIM B"] null null 0 "C(CCCCCCCCCCCCCC[C@@H](OC(=O)[C@H](C)C[C@H](C)C[C@H](C)C[C@H](C)CCCCCCCCCCCCC[R4])C[C@H](OC(=O)[C@H](C)C[C@H](C)C[C@H](C)C[C@H](C)CCCCCCCCCCCCC[R3])CCCC[C@H](C)C(=O)C[R1])[R2]" "CPD-18661" "L-selenaproline" ["selenazolidine-4-carboxylic acid"] "C4H7NO2Se" 180.065 0 "C1([NH2+][C@@H](C[Se]1)C(=O)[O-])" @@ -2173,7 +2173,7 @@ "CPD-18969" "dehydrodiconiferyl acid ketone" ["DCA-CL", "(2E)-3-[3-formyl-2-(4-hydroxy-3-methoxyphenyl)-7-methoxy-2,3-dihydro-1-benzofuran-5-yl]prop-2-enoate"] "C20H17O7" 369.35 -1 "COc1(cc(ccc(O)1)C2(Oc3(c(C(C=O)2)cc(/C=C/C([O-])=O)cc(OC)3)))" "CPD-18970" "dehydrodiconiferyl acid carboxylate" ["DCA-CC", "5-[(1E)-2-carboxyeth-1-en-1-yl]-2-(4-hydroxy-3-methoxyphenyl)-7-methoxy-2,3-dihydro-1-benzofuran-3-carboxylate"] "C20H16O8" 384.342 -2 "COc1(cc(ccc(O)1)C2(Oc3(c(C(C([O-])=O)2)cc(/C=C/C([O-])=O)cc(OC)3)))" "CPD-18991" "pentan-2-ol" ["2-pentyl alcohol", "2-pentanol"] "C5H12O" 88.149 0 "CCCC(O)C" -"CPD-190" "N-acetyl-α-D-glucosaminyl-diphosphodolichol" ["N-acetyl-α-D-glucosaminyldiphosphodolichol"] "C88H145NO12P2" 1471.06 -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(CCOP(OP(O[C@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](NC(=O)C)1))(=O)[O-])(=O)[O-])C" +"CPD-190" "N-acetyl-α-D-glucosaminyl-diphosphodolichol" ["N-acetyl-α-D-glucosaminyldiphosphodolichol"] null null -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/[R]CC(/C)=C/CCC(C)CCOP(OP(O[C@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](NC(=O)C)1))(=O)[O-])(=O)[O-]" "CPD-19093" "a leucoanthocyanidin" [] null null 0 "c3(c([R2])c([R1])c(C2(Oc1(c([R9])c(c([R7])c(c1C(C2O)O)[R6])[R8])))c([R5])c([R4])3)[R3]" "CPD-19111" "3-(6-sulfo-α-D-quinovosyl)-sn-glycerol" [] "C9H17O10S" 317.287 -1 "C(O)[C@@H](O)CO[C@@H]1([C@H](O)[C@H]([C@H](O)[C@@H](CS(=O)(=O)[O-])O1)O)" "CPD-19144" "(7Z)-hexadecenoyl-CoA" ["cis-hexadec-7-enoyl-CoA", "(7Z)-hexadec-7-enoyl-CoA", "16:1 cis-7", "16:1(n-9)"] "C37H60N7O17P3S" 999.899 -4 "CCCCCCCC\C=C/CCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(=O)(OP(=O)(OC[C@@H]1([C@@H](OP([O-])(=O)[O-])[C@@H](O)[C@@H](O1)n3(c2(c(c(N)ncn2)nc3))))[O-])[O-]" @@ -2320,7 +2320,7 @@ "CPD-20890" "tetraphenylphosphonium" ["TPP+"] "C24H20P" 341.412 1 "c4(ccc([P+](c1(ccccc1))(c2(ccccc2))c3(ccccc3))cc4)" "CPD-20893" "N-oxalylglycine" ["2-oxo-3-azaglutaric acid", "NOG", "oxaloglycine", "oxalylglycine"] "C4H5NO5" 147.087 0 "C(NC(=O)C(=O)O)C(=O)O" "CPD-20894" "dequalinium" ["DEQ"] "C30H40N4" 456.673 2 "Cc3(cc(N)c4(ccccc([n+](CCCCCCCCCC[n+]2(c1(ccccc1c(N)cc(C)2)))3)4))" -"CPD-20896" "chlorhexidine" [] "C22H30N10Cl2" 505.452 0 "C(CCCCCNC(NC(Nc1(ccc(Cl)cc1))=N)=N)NC(NC(Nc2(ccc(Cl)cc2))=N)=N" +"CPD-20896" "chlorhexidine" [] "C22H34N10Cl2" 509.48404 4 "C(CCCCCNC(NC(Nc1(ccc(Cl)cc1))=[NH2+])=[NH2+])NC(NC(Nc2(ccc(Cl)cc2))=[NH2+])=[NH2+]" "CPD-20897" "pentamidine" [] "C19H24N4O2" 340.424 0 "C(Oc1(ccc(C(N)=N)cc1))CCCCOc2(ccc(C(N)=N)cc2)" "CPD-20898" "nigericin" [] "C40H68O11" 724.971 0 "C[C@@H]6([C@@H](O[C@H](C[C@H]5(O[C@@]1([C@H](C)C[C@](C)(O1)[C@H]4(CC[C@]([C@@H]3(O[C@@H]([C@H]2(O[C@](CO)(O)[C@H](C)C[C@H](C)2))C[C@H](C)3))(C)O4))([C@H](C)[C@H](OC)C5)))CC6)[C@@H](C)C(O)=O)" "CPD-20899" "valinomycin" [] "C54H90N6O18" 1111.334 0 "CC(C)[C@H]1(NC(=O)[C@@H](C(C)C)OC(=O)[C@H](C(C)C)NC(=O)[C@H](C)OC(=O)[C@@H](C(C)C)NC(=O)[C@@H](C(C)C)OC(=O)[C@H](C(C)C)NC(=O)[C@H](C)OC(=O)[C@@H](C(C)C)NC(=O)[C@@H](C(C)C)OC(=O)[C@@H](NC(=O)[C@H](C)OC(=O)1)C(C)C)" @@ -2475,7 +2475,7 @@ "CPD-2343" "3-dehydro-L-gulonate 6-phosphate" ["3-keto-L-gulonate 6-P", "3-keto-L-gulonate 6-phosphate"] "C6H8O10P" 271.097 -3 "C(OP([O-])([O-])=O)[C@H](O)[C@H](C([C@@H](C([O-])=O)O)=O)O" "CPD-23430" "trans heme d" [] "C34H32N4O6Fe" 648.497 0 "C=CC3(\C8(\[N+]4(\[Fe]16([N+]5(\C(/[C@@]([C@](C(\C=c2(c(c(c(\n12)=C\C(\C(/C)=3)=4)C=C)C))=5)(C)O)(CCC(=O)[O-])O)=C/c7(n6c(c(c7CCC(=O)[O-])C)\C=8))))))" "CPD-23431" "keto-L-glycero-L-galacto-octuluronate" [] "C8H13O9" 253.185 -1 "C(C([C@H]([C@@H]([C@@H]([C@H]([C@H](C([O-])=O)O)O)O)O)O)=O)O" -"CPD-23445" "cytidylyl molybdenum cofactor (dioxo)" ["MoO2-molybdopterin cytosine dinucleotide", "Mo(VI)-molybdopterin cytosine dinucleotide", "MoO2(OH)Dtpp-mCDP", "MCD", "Mo-molybdopterin cytosine dinucleotide"] "C19H23N8O16P2S2Mo" 841.442 -3 "C(OP(OP(OC[C@H]2(O[C@H]1(Nc4(nc([nH]c(=O)c(N[C@H]1C3(\S[Mo-](O)(=O)(=O)SC\2=3))4)N))))([O-])=O)(=O)[O-])[C@@H]6([C@H]([C@H]([C@H](n5(ccc(N)nc5=O))O6)O)O)" +"CPD-23445" "cytidylyl molybdenum cofactor (dioxo)" ["MoO2-molybdopterin cytosine dinucleotide", "Mo(VI)-molybdopterin cytosine dinucleotide", "MoO2(OH)Dtpp-mCDP", "MCD", "Mo-molybdopterin cytosine dinucleotide"] "C19H22N8O16P2S2Mo" 840.434 -4 "C(OP(OP(OC[C@H]2(O[C@H]1(Nc4(nc([nH]c(=O)c(N[C@H]1C3(\S[Mo-](=O)(=O)([O-])SC\2=3))4)N))))([O-])=O)(=O)[O-])[C@@H]6([C@H]([C@H]([C@H](n5(ccc(N)nc5=O))O6)O)O)" "CPD-23449" "sulfo-bis(guanylyl molybdopterin) cofactor" ["sulfo-bis(molybdopterin guanine dinucleotide)molybdenum cofactor", "MoS(Dtpp-mGDP)2", "sulfo-bis-MGD", "sulfo-bis(molybdopterin guanine dinucleotide)molybdenum", "sulfo-molybdo-bis(pyranopterin guanine dinucleotide)", "sulfo-mo-bis(molybdopterin guanine dinucleotide)", "sulfo-Mo-bisPGD", "sulfo-Mo-bis(pyranopterin guanosine dinucleotide)"] null null -4 "C(OP([O-])(=O)OP([O-])(=O)OC[C@H]8(O[C@H]%10(Nc%11(nc(N)[nH]c(=O)c(N[C@@H](C9(\S[Mo]4([a bis(guanylyl molybdopterin) cofactor chaperone])(=S)(SC5(/[C@@H](COP([O-])(=O)OP(=O)([O-])OC[C@@H]1([C@@H](O)[C@@H](O)[C@@H](O1)n2(cnc3(c(=O)[nH]c(N)nc23))))O[C@@H]6([C@H](C(\S4)=5)Nc7(c(=O)[nH]c(N)nc(N6)7))))SC\8=9))%10)%11))))[C@@H]%12([C@@H](O)[C@@H](O)[C@@H](O%12)n%13(cnc%14(c%13nc(N)[nH]c(=O)%14)))" "CPD-23504" "darobactin" [] "C47H55N11O12" 966.018 0 "C(N)CC[C@H]6(c1(ccc2(c(c[nH]c(c1)2)[C@H]4(Oc3(cccc7(c3[nH]cc(C[C@H](N)C(N[C@@H](CC(=O)N)C(=O)NC4C(=O)N[C@@H](CO)C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)N[C@@H](Cc5(ccccc5))C(=O)O)6)=O)7))))))" "CPD-23531" "mechlorethamine" ["nitrogen mustard"] "C5H11NCl2" 156.055 0 "CN(CCCl)CCCl" @@ -2580,13 +2580,16 @@ "CPD-26635" "albicidin" ["4-[[4-[[4-[[(2S)-3-cyano-2-[[4-[[(E)-3-(4-hydroxyphenyl)-2-methylprop-2-enoyl]amino]benzoyl]amino]propanoyl]amino]benzoyl]amino]-2-hydroxy-3-methoxybenzoyl]amino]-2-hydroxy-3-methoxybenzoate"] "C44H37N6O12" 841.809 -1 "CC(/C(Nc1(ccc(cc1)C(N[C@@H](CC#N)C(Nc4(ccc(C(Nc3(ccc(C(Nc2(ccc(C(=O)[O-])c(c2OC)O))=O)c(c3OC)O))=O)cc4))=O)=O))=O)=C\c5(ccc(cc5)O)" "CPD-26676" "S-lactoylglutathione hemithioacetal" [] "C13H20N3O8S" 378.376 -1 "CC(=O)C(O)SC[C@@H](C(NCC([O-])=O)=O)NC(=O)CC[C@H]([NH3+])C([O-])=O" "CPD-26678" "hypothiocyanous acid" ["HOSCN", "nitrilomethane-SO-thioperoxol", "hypothiocyanite"] "CHNOS" 75.085 0 "C(SO)#N" -"CPD-26685" "adenylyl MoO2(OH)-molybdopterin cofactor" ["MoCo-AMP (dioxo)", "adenylated molybdenum cofactor (dioxo)"] "C20H23N10O15P2S2Mo" 865.467 -3 "C(OP(OP(=O)([O-])OC[C@@H]1(C4(\S[Mo-](=O)(=O)(O)SC(/[C@H]2([C@@H](O1)Nc3(c(N2)c(=O)[nH]c(N)n3)))=4)))(=O)[O-])[C@H]7(O[C@@H](n5(c6(c(nc5)c(N)ncn6)))[C@H](O)[C@H](O)7)" +"CPD-26685" "adenylyl MoO2(OH)-molybdopterin cofactor" ["MoCo-AMP (dioxo)", "adenylated molybdenum cofactor (dioxo)"] "C20H22N10O15P2S2Mo" 864.45905 -4 "C(OP(OP(=O)([O-])OC[C@@H]1(C4(\S[Mo-](=O)(=O)([O-])SC(/[C@H]2([C@@H](O1)Nc3(c(N2)c(=O)[nH]c(N)n3)))=4)))(=O)[O-])[C@H]7(O[C@@H](n5(c6(c(nc5)c(N)ncn6)))[C@H](O)[C@H](O)7)" "CPD-26686" "adenylyl MoO3-molybdopterin cofactor" ["MoCo-AMP (trioxo)", "adenylated molybdenum cofactor (trioxo)"] "C20H22N10O15P2S2Mo" 864.459 -4 "C(OP(OP(=O)([O-])OC[C@@H]1(C4(\S[Mo-2](=O)(=O)(=O)SC(/[C@H]2([C@@H](O1)Nc3(c(N2)c(=O)[nH]c(N)n3)))=4)))(=O)[O-])[C@H]7(O[C@@H](n5(c6(c(nc5)c(N)ncn6)))[C@H](O)[C@H](O)7)" "CPD-26731" "N-(1-deoxy-D-fructopyranos-1-yl)glycine" ["N-(1-deoxy-D-fructos-1-yl)glycine", "deoxyfructosylglycine", "fructoseglycine"] "C8H15NO7" 237.209 0 "C([NH2+]CC(=O)[O-])[C@@]1(O)(OC[C@@H](O)[C@@H](O)[C@H](O)1)" "CPD-26745" "a viologen" [] null null 2 "c1([n+]([R])ccc(c1)c2(cc[n+]([R])cc2))" "CPD-26748" "GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-meso-DAP" ["GlcNAc-anhMurNAc-tripeptide"] "C34H52N6O19" 848.814 -2 "C[C@H](NC([C@H](O[C@@H]2([C@@H](NC(=O)C)C3(OCC([C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](NC(=O)C)1))2)O3)))C)=O)C(N[C@H](CCC(=O)N[C@@H](CCCC(C(=O)[O-])[NH3+])C(=O)[O-])C(=O)[O-])=O" "CPD-27" "phosphinate" ["hypophosphite"] "H2O2P" 64.988 -1 "[O-]P=O" "CPD-270" "an N-acyl-D-glucosamine" [] null null 0 "C(N[C@H]1([C@@H](O[C@@H]([C@H]([C@@H]1O)O)CO)O))(=O)[R]" +"CPD-27101" "Enterococcus faecalis capsular saccharide" ["Enterococcus faecalis diheteroglycan", "→6)-[3-O-(R)-lactoyl-]5-acetyl-β-D-Galf-(1→3)-β-D-Glcp-(1→", "Enterococcus faecalis serotype 2 capsular saccharide"] null null -4 "C[C@H](C([O-])=O)O[C@@H]1([C@@H](O)[C@@H](O[C@H]([C@H](OC(=O)C)CO[R1])1)O[C@@H]2([C@H](C(O[C@H](CO)[C@@H](O)2)OC[C@@H](OC(=O)C)[C@H]3([C@H](O[C@@H](C([O-])=O)C)[C@@H](O)[C@@H](O3)O[C@@H]4([C@H](C(O[C@H](CO)[C@@H](O)4)OC[C@@H](OC(=O)C)[C@H]5([C@H](O[C@@H](C([O-])=O)C)[C@@H](O)[C@@H](O5)O[C@@H]6([C@H](C(O[C@H](CO)[C@@H](O)6)OC[C@@H](OC(=O)C)[C@H]7([C@H](O[C@@H](C([O-])=O)C)[C@@H](O)[C@@H](O7)O[C@@H]8([C@@H](O)[C@H](O[R2])O[C@H](CO)[C@@H](O)8)))O)))O)))O))" +"CPD-27104" "lipid I (containing a pentapeptide)" [] null null -3 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(OP(O[C@H]1(O[C@H](CO)[C@@H](O)[C@H](O[C@@H](C(=O)N[C@@H](C)C(N[C@H](CCC(=O)N[C@@H](CCCC([R])[NH3+])C(=O)N[C@H](C)C(=O)N[C@H](C)C(=O)[O-])C(=O)[O-])=O)C)[C@@H](NC(=O)C)1))([O-])=O)(=O)[O-]" +"CPD-27111" "4-nitrophenyl-α-D-maltohexaoside" ["PG6"] "C42H65NO33" 1111.962 0 "c1(c(ccc(c1)O[C@@H]2([C@@H]([C@H]([C@@H]([C@@H](CO)O2)O[C@@H]3([C@@H]([C@H]([C@@H]([C@@H](CO)O3)O[C@@H]4([C@@H]([C@H]([C@@H]([C@@H](CO)O4)O[C@@H]5([C@@H]([C@H]([C@@H]([C@@H](CO)O5)O[C@@H]6([C@@H]([C@H]([C@@H]([C@@H](CO)O6)O[C@@H]7([C@@H]([C@H]([C@@H]([C@@H](CO)O7)O)O)O))O)O))O)O))O)O))O)O))O)O))[N+](=O)[O-])" "CPD-273" "N-glycolylneuraminate" ["N-glycoloyl-neuraminate", "N--glycolylneuraminic acid", "Neu5Gc"] "C11H18NO10" 324.264 -1 "C(O)[C@@H](O)[C@@H](O)[C@@H]1(OC(O)(C([O-])=O)C[C@H](O)[C@@H](NC(CO)=O)1)" "CPD-280" "glutarate semialdehyde" ["5-oxopentanoate"] "C5H7O3" 115.108 -1 "C(CCCC(=O)[O-])=O" "CPD-2841" "azide" ["trinitride (1-)"] "N3" 42.02 -1 "[N-]=[N+]=[N-]" @@ -2743,16 +2746,16 @@ "CPD-507" "β-D-cellobiose 6'-phosphate" ["β-D-cellobiose-6'-p", "6-phospho-β-D-glucosyl-(1,4)-β-D-glucose"] "C12H21O14P" 420.263 -2 "C(O)[C@H]1(O[C@H]([C@@H]([C@H]([C@@H]1O[C@H]2([C@@H]([C@H]([C@@H]([C@H](O2)COP([O-])(=O)[O-])O)O)O))O)O)O)" "CPD-510" "α-D-glucuronate 1-phosphate" ["glucuronate-1-P", "glucuronate-1-phosphate", "D-glucuronate-1-P", "D-glucuronate-1-phosphate", "1-phospho-α-D-glucuronate"] "C6H8O10P" 271.097 -3 "C([C@H]1(O[C@@H]([C@@H]([C@H]([C@@H]1O)O)O)OP([O-])([O-])=O))(=O)[O-]" "CPD-511" "pantetheine" ["pantotheine", "D-Pantetheine", "(R)-Pantetheine"] "C11H22N2O4S" 278.366 0 "CC([C@@H](O)C(=O)NCCC(NCCS)=O)(C)CO" -"CPD-5161" "α-D-Man-(1→3)-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["α-D-mannosyl-(1→3)-β-D-mannosyl-(1→4)-N-acetyl-β-D-glucosaminyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphosphodolichol", "a (mannosyl)2-(N-acetylglucosaminyl)2-diphosphodolichol"] "C108H178N2O27P2" 1998.539 -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(CCOP(OP(O[C@H]4(O[C@H](CO)[C@@H](O[C@H]3([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO)O[C@@H]2([C@@H](O)[C@@H](O)[C@@H]([C@H](O2)CO)O)))[C@@H](CO)O3)O))[C@H](O)[C@@H](NC(=O)C)4))(=O)[O-])(=O)[O-])C" -"CPD-5162" "α-D-Man-(1→3)-[α-D-Man-(1→6)]-α-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["α-D-mannosyl-(1→3)-[α-D-mannosyl-(1→6)]-α-D-mannosyl-(1→4)-N-acetyl-β-D-glucosaminyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphosphodolichol", "a (mannosyl)3-(N-acetylglucosaminyl)2-diphosphodolichol"] "C114H188N2O32P2" 2160.681 -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(CCOP(OP(O[C@H]5(O[C@H](CO)[C@@H](O[C@H]4([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO)O))O[C@@H]3([C@@H](O)[C@@H](O)[C@@H]([C@H](O3)CO)O)))[C@@H](CO)O4)O))[C@H](O)[C@@H](NC(=O)C)5))(=O)[O-])(=O)[O-])C" +"CPD-5161" "α-D-Man-(1→3)-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["α-D-mannosyl-(1→3)-β-D-mannosyl-(1→4)-N-acetyl-β-D-glucosaminyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphosphodolichol", "a (mannosyl)2-(N-acetylglucosaminyl)2-diphosphodolichol"] null null -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/[R]CC(/C)=C/CCC(CCOP(OP(O[C@H]4(O[C@H](CO)[C@@H](O[C@H]3([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO)O[C@@H]2([C@@H](O)[C@@H](O)[C@@H]([C@H](O2)CO)O)))[C@@H](CO)O3)O))[C@H](O)[C@@H](NC(=O)C)4))(=O)[O-])(=O)[O-])C" +"CPD-5162" "α-D-Man-(1→3)-[α-D-Man-(1→6)]-α-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["α-D-mannosyl-(1→3)-[α-D-mannosyl-(1→6)]-α-D-mannosyl-(1→4)-N-acetyl-β-D-glucosaminyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphosphodolichol", "a (mannosyl)3-(N-acetylglucosaminyl)2-diphosphodolichol"] null null -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/[R]CC(/C)=C/CCC(CCOP(OP(O[C@H]5(O[C@H](CO)[C@@H](O[C@H]4([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO)O))O[C@@H]3([C@@H](O)[C@@H](O)[C@@H]([C@H](O3)CO)O)))[C@@H](CO)O4)O))[C@H](O)[C@@H](NC(=O)C)5))(=O)[O-])(=O)[O-])C" "CPD-5163" "a (mannosyl)4-(N-acetylglucosaminyl)2-diphosphodolichol" ["an {α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol"] "C120H198N2O37P2" 2322.823 -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CC[C@@H](CCOP(OP(OC1(O[C@H](CO)[C@H]([C@H](O)[C@@H](NC(C)=O)1)O[C@H]2([C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@H]3([C@H]([C@H]([C@@H]([C@H](O3)CO[C@@H]4([C@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O))O)O[C@@H]5([C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@@H]6([C@H]([C@H]([C@@H]([C@H](O6)CO)O)O)O)))O))O)NC(=O)C)))(=O)[O-])(=O)[O-])C" -"CPD-5164" "α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["a (mannosyl)5-(N-acetylglucosaminyl)2-diphosphodolichol", "α-D-mannosyl-(1→2)-α-D-mannosyl-(1→2)-α-D-mannosyl-(1→3)-[α-D-mannosyl-(1→6)]-β-D-mannosyl-(1→4)-N-acetyl-β-D-glucosaminyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphosphodolichol"] "C126H208N2O42P2" 2484.965 -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(CCOP(OP(O[C@H]7(O[C@H](CO)[C@@H](O[C@H]6([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO)O))O[C@@H]5([C@@H](O[C@@H]4([C@@H](O[C@@H]3([C@@H](O)[C@H]([C@H](O)[C@@H](CO)O3)O))[C@H]([C@H](O)[C@H](O4)CO)O))[C@@H](O)[C@@H]([C@H](O5)CO)O)))[C@@H](CO)O6)O))[C@H](O)[C@@H](NC(=O)C)7))(=O)[O-])(=O)[O-])C" -"CPD-5165" "α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→3)-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["an {α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->3)-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "{α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->3)-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "a (mannosyl)6-(N-acetylglucosaminyl)2-diphosphodolichol"] "C132H218N2O47P2" 2647.106 -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(CCOP(OP(O[C@H]8(O[C@H](CO)[C@@H](O[C@H]7([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO)O[C@@H]3([C@@H](O)[C@H]([C@H](O)[C@@H](CO)O3)O)))O[C@@H]6([C@@H](O[C@@H]5([C@@H](O[C@@H]4([C@@H](O)[C@H]([C@H](O)[C@@H](CO)O4)O))[C@H]([C@H](O)[C@H](O5)CO)O))[C@@H](O)[C@@H]([C@H](O6)CO)O)))[C@@H](CO)O7)O))[C@H](O)[C@@H](NC(=O)C)8))(=O)[O-])(=O)[O-])C" -"CPD-5166" "α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["an {α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "{α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "a (mannosyl)7-(N-acetylglucosaminyl)2-diphosphodolichol"] "C138H228N2O52P2" 2809.249 -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(CCOP(OP(O[C@H]9(O[C@H](CO)[C@@H](O[C@H]8([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO)O[C@@H]4([C@@H](O[C@@H]3([C@H]([C@@H](O)[C@H](O)[C@@H](CO)O3)O))[C@H]([C@H](O)[C@@H](CO)O4)O)))O[C@@H]7([C@@H](O[C@@H]6([C@@H](O[C@@H]5([C@@H](O)[C@H]([C@H](O)[C@@H](CO)O5)O))[C@H]([C@H](O)[C@H](O6)CO)O))[C@@H](O)[C@@H]([C@H](O7)CO)O)))[C@@H](CO)O8)O))[C@H](O)[C@@H](NC(=O)C)9))(=O)[O-])(=O)[O-])C" -"CPD-5167" "α-D-Man-a-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["an {α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1,6)]-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "{α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1,6)]-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "a (mannosyl)8-(N-acetylglucosaminyl)2-diphosphodolichol"] "C144H238N2O57P2" 2971.391 -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(CCOP(OP(O[C@H]%10(O[C@H](CO)[C@@H](O[C@H]9([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO[C@H]3(O[C@@H]([C@H]([C@@H]([C@@H]3O)O)O)CO))O[C@@H]5([C@@H](O[C@@H]4([C@H]([C@@H](O)[C@H](O)[C@@H](CO)O4)O))[C@H]([C@H](O)[C@@H](CO)O5)O)))O[C@@H]8([C@@H](O[C@@H]7([C@@H](O[C@@H]6([C@@H](O)[C@H]([C@H](O)[C@@H](CO)O6)O))[C@H]([C@H](O)[C@H](O7)CO)O))[C@@H](O)[C@@H]([C@H](O8)CO)O)))[C@@H](CO)O9)O))[C@H](O)[C@@H](NC(=O)C)%10))(=O)[O-])(=O)[O-])C" -"CPD-5168" "α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["an {α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1,6)]-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "{α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1,6)]-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "a (mannosyl)9-(N-acetylglucosaminyl)2-diphosphodolichol"] "C150H248N2O62P2" 3133.533 -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(CCOP(OP(O[C@H]%11(O[C@H](CO)[C@@H](O[C@H]%10([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO[C@H]3(O[C@@H]([C@H]([C@@H]([C@@H]3O[C@@H]4([C@H]([C@@H](O)[C@H](O)[C@@H](CO)O4)O))O)O)CO))O[C@@H]6([C@@H](O[C@@H]5([C@H]([C@@H](O)[C@H](O)[C@@H](CO)O5)O))[C@H]([C@H](O)[C@@H](CO)O6)O)))O[C@@H]9([C@@H](O[C@@H]8([C@@H](O[C@@H]7([C@@H](O)[C@H]([C@H](O)[C@@H](CO)O7)O))[C@H]([C@H](O)[C@H](O8)CO)O))[C@@H](O)[C@@H]([C@H](O9)CO)O)))[C@@H](CO)O%10)O))[C@H](O)[C@@H](NC(=O)C)%11))(=O)[O-])(=O)[O-])C" -"CPD-5169" "α-D-Glc-(1→3)-α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["an {α-D-Glc-(1→3)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1,6)]-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "{α-D-Glc-(1→3)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1,6)]-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "a glucosyl-(mannosyl)9-(N-acetylglucosaminyl)2-diphosphodolichol"] "C156H258N2O67P2" 3295.675 -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(CCOP(OP(O[C@H]%12(O[C@H](CO)[C@@H](O[C@H]%11([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO[C@H]3(O[C@@H]([C@H]([C@@H]([C@@H]3O[C@@H]4([C@H]([C@@H](O)[C@H](O)[C@@H](CO)O4)O))O)O)CO))O[C@@H]6([C@@H](O[C@@H]5([C@H]([C@@H](O)[C@H](O)[C@@H](CO)O5)O))[C@H]([C@H](O)[C@@H](CO)O6)O)))O[C@@H]%10([C@@H](O[C@@H]9([C@@H](O[C@@H]7([C@@H](O)[C@H]([C@H](O)[C@@H](CO)O7)O[C@@H]8([C@H](O)[C@H]([C@H](O)[C@@H](CO)O8)O)))[C@H]([C@H](O)[C@H](O9)CO)O))[C@@H](O)[C@@H]([C@H](O%10)CO)O)))[C@@H](CO)O%11)O))[C@H](O)[C@@H](NC(=O)C)%12))(=O)[O-])(=O)[O-])C" -"CPD-5170" "α-D-Glc-(1→3)-α-D-Glc-(1→3)-α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["an {α-D-glucosyl-(1->3)-α-D-glucosyl-(1->3)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1,6)]-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "{α-D-glucosyl-(1->3)-α-D-glucosyl-(1->3)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1,6)]-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "a (glucosyl)2(mannosyl)9-(N-acetylglucosaminyl)2-diphosphodolichol"] "C162H268N2O72P2" 3457.817 -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(CCOP(OP(O[C@H]%13(O[C@H](CO)[C@@H](O[C@H]%12([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO[C@H]3(O[C@@H]([C@H]([C@@H]([C@@H]3O[C@@H]4([C@H]([C@@H](O)[C@H](O)[C@@H](CO)O4)O))O)O)CO))O[C@@H]6([C@@H](O[C@@H]5([C@H]([C@@H](O)[C@H](O)[C@@H](CO)O5)O))[C@H]([C@H](O)[C@@H](CO)O6)O)))O[C@@H]%11([C@@H](O[C@@H]%10([C@@H](O[C@@H]7([C@@H](O)[C@H]([C@H](O)[C@@H](CO)O7)O[C@@H]8([C@H](O)[C@H]([C@H](O)[C@@H](CO)O8)O[C@@H]9([C@H](O)[C@H]([C@H](O)[C@@H](CO)O9)O))))[C@H]([C@H](O)[C@H](O%10)CO)O))[C@@H](O)[C@@H]([C@H](O%11)CO)O)))[C@@H](CO)O%12)O))[C@H](O)[C@@H](NC(=O)C)%13))(=O)[O-])(=O)[O-])C" +"CPD-5164" "α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["a (mannosyl)5-(N-acetylglucosaminyl)2-diphosphodolichol", "α-D-mannosyl-(1→2)-α-D-mannosyl-(1→2)-α-D-mannosyl-(1→3)-[α-D-mannosyl-(1→6)]-β-D-mannosyl-(1→4)-N-acetyl-β-D-glucosaminyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphosphodolichol"] null null -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/[R]CC(/C)=C/CCC(CCOP(OP(O[C@H]7(O[C@H](CO)[C@@H](O[C@H]6([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO)O))O[C@@H]5([C@@H](O[C@@H]4([C@@H](O[C@@H]3([C@@H](O)[C@H]([C@H](O)[C@@H](CO)O3)O))[C@H]([C@H](O)[C@H](O4)CO)O))[C@@H](O)[C@@H]([C@H](O5)CO)O)))[C@@H](CO)O6)O))[C@H](O)[C@@H](NC(=O)C)7))(=O)[O-])(=O)[O-])C" +"CPD-5165" "α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→3)-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["an {α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->3)-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "{α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->3)-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "a (mannosyl)6-(N-acetylglucosaminyl)2-diphosphodolichol"] null null -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/[R]CC(/C)=C/CCC(CCOP(OP(O[C@H]8(O[C@H](CO)[C@@H](O[C@H]7([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO)O[C@@H]3([C@@H](O)[C@H]([C@H](O)[C@@H](CO)O3)O)))O[C@@H]6([C@@H](O[C@@H]5([C@@H](O[C@@H]4([C@@H](O)[C@H]([C@H](O)[C@@H](CO)O4)O))[C@H]([C@H](O)[C@H](O5)CO)O))[C@@H](O)[C@@H]([C@H](O6)CO)O)))[C@@H](CO)O7)O))[C@H](O)[C@@H](NC(=O)C)8))(=O)[O-])(=O)[O-])C" +"CPD-5166" "α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["an {α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "{α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "a (mannosyl)7-(N-acetylglucosaminyl)2-diphosphodolichol"] null null -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/[R]CC(/C)=C/CCC(CCOP(OP(O[C@H]9(O[C@H](CO)[C@@H](O[C@H]8([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO)O[C@@H]4([C@@H](O[C@@H]3([C@H]([C@@H](O)[C@H](O)[C@@H](CO)O3)O))[C@H]([C@H](O)[C@@H](CO)O4)O)))O[C@@H]7([C@@H](O[C@@H]6([C@@H](O[C@@H]5([C@@H](O)[C@H]([C@H](O)[C@@H](CO)O5)O))[C@H]([C@H](O)[C@H](O6)CO)O))[C@@H](O)[C@@H]([C@H](O7)CO)O)))[C@@H](CO)O8)O))[C@H](O)[C@@H](NC(=O)C)9))(=O)[O-])(=O)[O-])C" +"CPD-5167" "α-D-Man-a-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["an {α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1,6)]-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "{α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1,6)]-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "a (mannosyl)8-(N-acetylglucosaminyl)2-diphosphodolichol"] null null -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/[R]CC(/C)=C/CCC(CCOP(OP(O[C@H]%10(O[C@H](CO)[C@@H](O[C@H]9([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO[C@H]3(O[C@@H]([C@H]([C@@H]([C@@H]3O)O)O)CO))O[C@@H]5([C@@H](O[C@@H]4([C@H]([C@@H](O)[C@H](O)[C@@H](CO)O4)O))[C@H]([C@H](O)[C@@H](CO)O5)O)))O[C@@H]8([C@@H](O[C@@H]7([C@@H](O[C@@H]6([C@@H](O)[C@H]([C@H](O)[C@@H](CO)O6)O))[C@H]([C@H](O)[C@H](O7)CO)O))[C@@H](O)[C@@H]([C@H](O8)CO)O)))[C@@H](CO)O9)O))[C@H](O)[C@@H](NC(=O)C)%10))(=O)[O-])(=O)[O-])C" +"CPD-5168" "α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["an {α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1,6)]-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "{α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1,6)]-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "a (mannosyl)9-(N-acetylglucosaminyl)2-diphosphodolichol"] null null -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/[R]CC(/C)=C/CCC(CCOP(OP(O[C@H]%11(O[C@H](CO)[C@@H](O[C@H]%10([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO[C@H]3(O[C@@H]([C@H]([C@@H]([C@@H]3O[C@@H]4([C@H]([C@@H](O)[C@H](O)[C@@H](CO)O4)O))O)O)CO))O[C@@H]6([C@@H](O[C@@H]5([C@H]([C@@H](O)[C@H](O)[C@@H](CO)O5)O))[C@H]([C@H](O)[C@@H](CO)O6)O)))O[C@@H]9([C@@H](O[C@@H]8([C@@H](O[C@@H]7([C@@H](O)[C@H]([C@H](O)[C@@H](CO)O7)O))[C@H]([C@H](O)[C@H](O8)CO)O))[C@@H](O)[C@@H]([C@H](O9)CO)O)))[C@@H](CO)O%10)O))[C@H](O)[C@@H](NC(=O)C)%11))(=O)[O-])(=O)[O-])C" +"CPD-5169" "α-D-Glc-(1→3)-α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["an {α-D-Glc-(1→3)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1,6)]-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "{α-D-Glc-(1→3)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1,6)]-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "a glucosyl-(mannosyl)9-(N-acetylglucosaminyl)2-diphosphodolichol"] null null -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/[R]CC(/C)=C/CCC(C)CCOP(OP(O[C@H]%12(O[C@H](CO)[C@@H](O[C@H]%11([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO[C@H]3(O[C@@H]([C@H]([C@@H]([C@@H]3O[C@@H]4([C@H]([C@@H](O)[C@H](O)[C@@H](CO)O4)O))O)O)CO))O[C@@H]6([C@@H](O[C@@H]5([C@H]([C@@H](O)[C@H](O)[C@@H](CO)O5)O))[C@H]([C@H](O)[C@@H](CO)O6)O)))O[C@@H]%10([C@@H](O[C@@H]9([C@@H](O[C@@H]7([C@@H](O)[C@H]([C@H](O)[C@@H](CO)O7)O[C@@H]8([C@H](O)[C@H]([C@H](O)[C@@H](CO)O8)O)))[C@H]([C@H](O)[C@H](O9)CO)O))[C@@H](O)[C@@H]([C@H](O%10)CO)O)))[C@@H](CO)O%11)O))[C@H](O)[C@@H](NC(=O)C)%12))(=O)[O-])(=O)[O-]" +"CPD-5170" "α-D-Glc-(1→3)-α-D-Glc-(1→3)-α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol" ["an {α-D-glucosyl-(1->3)-α-D-glucosyl-(1->3)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1,6)]-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "{α-D-glucosyl-(1->3)-α-D-glucosyl-(1->3)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1,6)]-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "a (glucosyl)2(mannosyl)9-(N-acetylglucosaminyl)2-diphosphodolichol"] null null -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/[R]CC(/C)=C/CCC(CCOP(OP(O[C@H]%13(O[C@H](CO)[C@@H](O[C@H]%12([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO[C@H]3(O[C@@H]([C@H]([C@@H]([C@@H]3O[C@@H]4([C@H]([C@@H](O)[C@H](O)[C@@H](CO)O4)O))O)O)CO))O[C@@H]6([C@@H](O[C@@H]5([C@H]([C@@H](O)[C@H](O)[C@@H](CO)O5)O))[C@H]([C@H](O)[C@@H](CO)O6)O)))O[C@@H]%11([C@@H](O[C@@H]%10([C@@H](O[C@@H]7([C@@H](O)[C@H]([C@H](O)[C@@H](CO)O7)O[C@@H]8([C@H](O)[C@H]([C@H](O)[C@@H](CO)O8)O[C@@H]9([C@H](O)[C@H]([C@H](O)[C@@H](CO)O9)O))))[C@H]([C@H](O)[C@H](O%10)CO)O))[C@@H](O)[C@@H]([C@H](O%11)CO)O)))[C@@H](CO)O%12)O))[C@H](O)[C@@H](NC(=O)C)%13))(=O)[O-])(=O)[O-])C" "CPD-520" "quercetin" ["3,5,7,3',4'-pentahydroxyflavone", "3,5,7,3',4'-pentahydroflavone"] "C15H9O7" 301.232 -1 "c1(cc(O)c(O)cc1C2(/Oc3(c(C(=O)C(/O)=2)c(O)cc([O-])c3)))" "CPD-522" "6-acetyl-D-glucose" [] "C8H14O7" 222.194 0 "CC(OC[C@H]1(OC([C@@H]([C@H]([C@@H]1O)O)O)O))=O" "CPD-524" "aspirin" ["salicylic acid acetate", "o-carboxyphenyl acetate", "O-acetylsalicylic acid", "o-acetoxybenzoic acid", "Easprin", "Azetylsalizylsaeure", "ASA", "acidum acetylsalicylicum", "acido acetilsalicilico", "acide acetylsalicylique", "acide 2-(acetyloxy)benzoique", "Acetylsalicylsaeure", "2-acetoxybenzoic acid", "acetylsalicylic acid", "2-acetoxybenzenecarboxylic acid", "acetylsalicylate"] "C9H7O4" 179.152 -1 "CC(Oc1(ccccc1C([O-])=O))=O" @@ -2786,7 +2789,7 @@ "CPD-576" "an N-acyl-L-aspartate" [] null null -2 "C(N[C@H](C(=O)[O-])CC(=O)[O-])([R])=O" "CPD-58" "octopamine" ["1-(4-hydroxyphenyl)-2-aminoethanol", "p-hydroxyphenylethanolamine", "D,L-octopamine"] "C8H12NO2" 154.188 1 "C(C(c1(ccc(cc1)O))O)[NH3+]" "CPD-581" "N,N-Dimethylformamide" ["N,N-Dimethylmethanamide", "DMF"] "C3H7NO" 73.094 0 "CN(C)C=O" -"CPD-582" "guanylyl molybdenum cofactor" ["MGD", "MPT-GMP", "MoO2(OH)Dtpp-mGDP", "molybdopterin guanine dinucleotide"] "C20H23N10O16P2S2Mo" 881.467 -3 "C(OP(OP(=O)([O-])OC[C@H]2(O[C@H]1(Nc4(nc(N)[nH]c(=O)c(N[C@H]1C3(\S[Mo-](O)(=O)(=O)SC\2=3))4))))(=O)[O-])[C@H]7(O[C@@H](n5(c6(c(nc5)c(=O)[nH]c(N)n6)))[C@H](O)[C@H](O)7)" +"CPD-582" "guanylyl molybdenum cofactor" ["MGD", "MPT-GMP", "MoO2(OH)Dtpp-mGDP", "molybdopterin guanine dinucleotide"] "C20H22N10O16P2S2Mo" 880.45905 -4 "C(OP(OP(=O)([O-])OC[C@H]2(O[C@H]1(Nc4(nc(N)[nH]c(=O)c(N[C@H]1C3(\S[Mo-]([O-])(=O)(=O)SC\2=3))4))))(=O)[O-])[C@H]7(O[C@@H](n5(c6(c(nc5)c(=O)[nH]c(N)n6)))[C@H](O)[C@H](O)7)" "CPD-5821" "(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline" ["(S)-5-hydroxy-2-oxo-4-ureido-2,5-dihydro-1H imidazole-5-carboxylate", "(S)-OHCU", "4-(carbamoylamino)-5-hydroxy-2-oxo-2,5-dihydro-1H-imidazole-5-carboxylate"] "C5H5N4O5" 201.118 -1 "C([C@]1(O)(NC(=O)/N=C1/NC(N)=O))(=O)[O-]" "CPD-5861" "2-deoxy-D-galactose" ["2-deoxy-D-lyxohexose", "deoxygalactose"] "C6H12O5" 164.158 0 "C(O)[C@@H]1([C@H](O)[C@H](O)CC(O)O1)" "CPD-593" "methylguanidinium" ["methylguanidine"] "C2H8N3" 74.105 1 "CNC(N)=[NH2+]" @@ -2838,7 +2841,7 @@ "CPD-6901" "cerulenin" [] "C12H17NO3" 223.271 0 "C/C=C/C/C=C/CCC(=O)[C@@H]1(O[C@@H](C(N)=O)1)" "CPD-6972" "4-(2'-carboxyphenyl)-4-oxobutyryl-CoA" ["succinylbenzoyl-CoA", "2-succinylbenzoyl-CoA", "2-(3'-carboxypropionyl)benzoyl-CoA", "o-succinylbenzoyl-CoA"] "C32H39N7O20P3S" 966.676 -5 "CC(C)([C@@H](O)C(=O)NCCC(=O)NCCSC(CCC(c1(ccccc(C([O-])=O)1))=O)=O)COP(=O)(OP(=O)(OC[C@H]2(O[C@H]([C@@H]([C@@H]2OP([O-])(=O)[O-])O)n4(c3(c(c(N)ncn3)nc4))))[O-])[O-]" "CPD-6982" "(R)-3-(3,4-dihydroxyphenyl)lactate" ["R(+)-(3,4-dihydroxyphenyl)lactic acid", "(2R)-3-(3,4-dihydroxyphenyl)-2-hydroxypropanoate"] "C9H9O5" 197.167 -1 "C([C@@H](Cc1(ccc(O)c(O)c1))O)(=O)[O-]" -"CPD-7" "a [4Fe-4S] iron-sulfur cluster" ["Iron-sulfur (4Fe-4S)", "a 4Fe-4S iron-sulfur cluster", "a 4Fe-4S center", "a 4Fe-4S cluster", "a 4Fe-4S iron-sulfur center", "a Fe4S4 iron-sulfur center", "a [4Fe-4S] iron-sulfur center", "[4Fe-4S]", "4Fe-4S", "[4Fe-4S] cluster"] "H4S4Fe4" 351.628 0 "[Fe]15(S4([Fe]3(S1[Fe]2(S([Fe](S23)4)5))))" +"CPD-7" "a [4Fe-4S] iron-sulfur cluster" ["Iron-sulfur (4Fe-4S)", "a 4Fe-4S iron-sulfur cluster", "a 4Fe-4S center", "a 4Fe-4S cluster", "a 4Fe-4S iron-sulfur center", "a Fe4S4 iron-sulfur center", "a [4Fe-4S] iron-sulfur center", "[4Fe-4S]", "4Fe-4S", "[4Fe-4S] cluster", "Fe4S4 cluster"] "H4S4Fe4" 351.628 0 "[Fe]15(S4([Fe]3(S1[Fe]2(S([Fe](S23)4)5))))" "CPD-7000" "isobutanal" ["isobutyraldehyde", "isobutylaldehyde"] "C4H8O" 72.107 0 "CC(C)C=O" "CPD-702" "4-nitrobenzyl alcohol" ["4NBA"] "C7H7NO3" 153.137 0 "C(O)c1(ccc(cc1)[N+]([O-])=O)" "CPD-703" "4-nitrobenzaldehyde" ["4NBZ", "p-nitrobenzaldehyde"] "C7H5NO3" 151.121 0 "C(=O)c1(ccc(cc1)[N+]([O-])=O)" @@ -2909,7 +2912,7 @@ "CPD-8528" "a [protein] C-terminal (2S)-2-hydroxyglycine" ["a C-terminal peptidylamidoglycolate", "a C-terminal peptidyl 2-hydroxyglycine"] null null -1 "[C@H](O)(N[a protein])C(=O)[O-]" "CPD-8534" "DNA without lesion" [] null null 0 null "CPD-8536" "O-4''-α-D-mannosylqueuosine34 in tRNAAsp" ["a tRNAAsp-O-4'-β-D-mannosylqueuosine", "D-mannosyl-4'-O-β-queuosine at position 34 of a tRNAAsp"] null null -1 "C([NH2+]C2(\C=C/[C@H](O[C@@H]1([C@@H](O)[C@@H](O)[C@H](O)[C@@H](CO)O1))[C@H](O)2))c3(c5(c(=O)[nH]c(N)nc(n(c3)[C@@H]4(O[C@H](COP(=O)([O-])O[tRNAasp])[C@@H](OP(=O)(O[tRNAasp])[O-])[C@@H](O)4))5))" -"CPD-8539" "a 3-[(3S)-3-amino-3-carboxypropyl]-uridine in tRNA" ["a tRNA 3-(3-amino-3-carboxypropyl)-uridine"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(=O)n(CC[C@@H](C([O-])=O)[NH3+])c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" +"CPD-8539" "a 3-[(3S)-3-amino-3-carboxypropyl]-uridine in tRNA" ["a tRNA 3-(3-amino-3-carboxypropyl)-uridine"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(=O)n(CC[C@@H](C([O-])=O)[NH3+])c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" "CPD-8541" "a [protein]-N4-(N-acetyl-β-D-glucosaminyl)-L-asparagine" ["a 4-N-(N-acetyl-β-D-glucosaminyl)-protein"] null null 0 "CC(=O)N[C@@H]1([C@@H](O)[C@H](O)[C@@H](CO)O[C@H]1NC(=O)C[C@H](N[a protein])C([a protein])=O)" "CPD-8548" "a (2S,3R)-aldopyranose" ["a D-threo-aldose", "a (2S,3R)-aldose"] null null 0 "C1([R])(C(O)[C@@H](O)[C@H](O)C(O)O1)" "CPD-8549" "a (2S,3R)-aldono-1,5-lactone" ["a D-threo-aldono-1,5-lactone"] null null 0 "C1([R])(C(O)[C@@H](O)[C@H](O)C(=O)O1)" @@ -2996,11 +2999,11 @@ "CPD-9396" "ascarylose" ["3,6-dideoxy-L-mannose", "3,6-dideoxy-L-arabino-hexose"] "C6H12O4" 148.158 0 "C[C@H](O)[C@H](O)C[C@@H](O)C=O" "CPD-9399" "D-paratose" ["3,6-dideoxy-D-ribo-hexose"] "C6H12O4" 148.158 0 "C[C@@H](O)[C@@H](O)C[C@@H](O)C=O" "CPD-9451" "2-isopropylmaleate" ["β-isopropylmaleate", "2-isopropylmaleic acid"] "C7H8O4" 156.138 -2 "CC(C(\C(=O)[O-])=C\C(=O)[O-])C" -"CPD-9452" "di-trans,poly-cis-decaprenyl diphosphate" ["di-trans-poly-cis-decaprenyl diphosphate", "decaprenyl-PP", "decaprenyl pyrophosphate", "decaprenyl diphosphate"] "C50H81O7P2" 856.133 -3 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP([O-])(=O)OP([O-])(=O)[O-]" -"CPD-9453" "di-trans,poly-cis-nonaprenyl diphosphate" ["nonaprenyl-PP", "nonaprenyl pyrophosphate", "nonaprenyl diphosphate"] "C45H73O7P2" 788.015 -3 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP([O-])(=O)OP([O-])(=O)[O-]" -"CPD-9454" "di-trans,poly-cis-octaprenyl diphosphate" ["octaprenyl-PP", "octaprenyl pyrophosphate", "octaprenyl diphosphate"] "C40H65O7P2" 719.897 -3 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(=O)(OP(=O)([O-])[O-])[O-]" -"CPD-9455" "di-trans,poly-cis-heptaprenyl diphosphate" ["heptaprenyl-PP", "heptaprenyl pyrophosphate", "heptaprenyl diphosphate"] "C35H57O7P2" 651.779 -3 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(=O)([O-])OP(=O)([O-])[O-]" -"CPD-9456" "di-trans,poly-cis-hexaprenyl diphosphate" ["hexaprenyl-PP", "hexaprenyl pyrophosphate", "hexaprenyl diphosphate"] "C30H49O7P2" 583.66 -3 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(OP([O-])([O-])=O)([O-])=O" +"CPD-9452" "di-trans,hepta-cis-decaprenyl diphosphate" ["di-trans-poly-cis-decaprenyl diphosphate", "decaprenyl-PP", "decaprenyl pyrophosphate", "decaprenyl diphosphate"] "C50H81O7P2" 856.133 -3 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP([O-])(=O)OP([O-])(=O)[O-]" +"CPD-9453" "di-trans,hexa-cis-nonaprenyl diphosphate" ["nonaprenyl-PP", "nonaprenyl pyrophosphate", "nonaprenyl diphosphate"] "C45H73O7P2" 788.015 -3 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP([O-])(=O)OP([O-])(=O)[O-]" +"CPD-9454" "di-trans,penta-cis-octaprenyl diphosphate" ["octaprenyl-PP", "octaprenyl pyrophosphate", "octaprenyl diphosphate"] "C40H65O7P2" 719.897 -3 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(=O)(OP(=O)([O-])[O-])[O-]" +"CPD-9455" "di-trans,tetra-cis-heptaprenyl diphosphate" ["heptaprenyl-PP", "heptaprenyl pyrophosphate", "heptaprenyl diphosphate"] "C35H57O7P2" 651.779 -3 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(=O)([O-])OP(=O)([O-])[O-]" +"CPD-9456" "di-trans,tri-cis-hexaprenyl diphosphate" ["hexaprenyl-PP", "hexaprenyl pyrophosphate", "hexaprenyl diphosphate"] "C30H49O7P2" 583.66 -3 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(OP([O-])([O-])=O)([O-])=O" "CPD-9457" "di-trans,di-cis-pentaprenyl diphosphate" ["2,6-cis, 10,14-trans-pentaprenyl diphosphate"] "C25H41O7P2" 515.542 -3 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/COP(=O)([O-])OP(=O)([O-])[O-]" "CPD-9481" "hederagenin" ["Caulosapogenin", "Astrantiagenin E", "Hederagenic acid", "(3-beta,4-alpha)-3,23-Dihydroxyolean-12-en-28-oic acid"] "C30H47O4" 471.699 -1 "CC2(CC[C@@]1(CC[C@@]3(C(/[C@@H]1C2)=C/C[C@H]4([C@]3(CC[C@@H]5([C@@]4(CC[C@@H]([C@](CO)(C)5)O)C))C))C)C([O-])=O)C" "CPD-9482" "soyasapogenol E" [] "C30H48O3" 456.707 0 "CC5(C)(C[C@H]4(C1(\[C@](C)([C@@]2(C)([C@H](C\C=1)[C@]3(C)([C@@H](CC2)[C@](CO)(C)[C@@H](O)CC3)))CC[C@](C)4C(=O)C5)))" @@ -3505,7 +3508,7 @@ "CPD0-1938" "ethidium" ["ethidium cation", "homidium"] "C21H20N3" 314.409 1 "CC[n+]3(c1(c(ccc(N)c1)c4(c(c(c2(ccccc2))3)cc(N)cc4)))" "CPD0-1939" "hoechst 33342" ["Hoe 33342", "2'-(4-ethoxyphenyl)-5-(4-methyl-1-piperazinyl)-2,5'-bi-1H-benzimidazole", "2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE", "2'-(p-ethoxyphenyl)-5-(4-methyl-1-piperazinyl)-2,5'-bibenzimidazole"] "C27H28N6O" 452.558 0 "CCOc1(ccc(cc1)c2(nc3(c([nH]2)cc(cc3)c4([nH]c5(cc(ccc(n4)5)N6(CCN(C)CC6))))))" "CPD0-1940" "DL-methionine sulfone" ["2-amino-4-(methylsulfonyl)butanoic acid", "(S)-amino-4-(methylsulphonyl)butyric acid", "DL-2-amino-4-(methylsulfonyl)butanoic acid", "(2S)-2-amino-4-methylsulfonylbutanoic acid", "butanoic acid, 2-amino-4-(methylsulfonyl)-"] "C5H11NO4S" 181.206 0 "CS(=O)(CCC(N)C(=O)O)=O" -"CPD0-1941" "4-aza-DL-leucine" [] "C5H12N2O2" 132.162 0 "C[NH+](C)CC(N)C([O-])=O" +"CPD0-1941" "4-azaleucine" ["4-aza-DL-leucine"] "C5H12N2O2" 132.162 0 "C[NH+](C)CC(N)C([O-])=O" "CPD0-1942" "(S)-2-aminobutanoate" ["L-α-amino-n-butyric acid", "(-)-2-aminobutyric acid", "L-2-aminobutyrate", "L-(+)-2-aminobutyric acid", "L-butyrine", "L-2-aminobutyric acid", "L-α-amino-n-butyrate", "L-α-aminobutyric acid", "L-α-aminobutyrate"] "C4H9NO2" 103.121 0 "CC[C@H]([NH3+])C(=O)[O-]" "CPD0-1944" "L-alanyl-D-aspartate" ["L-Ala-D-Asp"] "C7H11N2O5" 203.174 -1 "C[C@H]([NH3+])C(N[C@H](CC(=O)[O-])C(=O)[O-])=O" "CPD0-1945" "L-Ala-D-Gln" [] "C8H15N3O4" 217.224 0 "CC([NH3+])C(=O)NC(C(N)=O)CCC(=O)[O-]" @@ -3550,7 +3553,7 @@ "CPD0-2058" "hydroxyporphobilinogen" [] "C10H11NO5" 225.201 -2 "c1(c(c(c([nH]1)CO)CC(=O)[O-])CCC(=O)[O-])" "CPD0-2059" "2,3,4-trihydroxybenzoate" ["pyrogallolcarboxylate", "4-pyrogallolcarboxylic acid"] "C7H6O5" 170.121 0 "C(=O)(O)c1(ccc(O)c(O)c(O)1)" "CPD0-2060" "2,6-diaminopurine" ["Z base"] "C5H6N6" 150.143 0 "c1(nc2(c([nH]1)nc(N)nc(N)2))" -"CPD0-2061" "ubiquinol-1" ["ubiquinol(1)"] "C14H20O4" 252.31 0 "CC(C)=CCc1(c(C)c(O)c(OC)c(OC)c(O)1)" +"CPD0-2061" "ubiquinol-1" ["ubiquinol(1)"] "C14H20O4" 252.31 0 "CC(C)=CCc1(c(C)c(O)c(OC)c(OC)c(O)1)" "CPD0-2062" "4-nitrophenyl-α-D-glucopyranoside" ["p-nitrophenyl-α-D-glucopyranoside", "pNPαGlu"] "C12H15NO8" 301.252 0 "C(O)[C@H]1(O[C@@H]([C@@H]([C@H]([C@@H]1O)O)O)Oc2(ccc([N+](=O)[O-])cc2))" "CPD0-2064" "(11S)-HPODE" ["(9Z,12Z)-(11S)-11-hydroperoxyoctadeca-9,12-dienoate", "(11S)-11-hydroperoxylinoleic acid", "(9Z,11S,12Z)-11-hydroperoxyoctadeca-9,12-dienoate", "(11S)-11-hydroperoxylinoleate"] "C18H31O4" 311.44 -1 "CCCCC\C=C/[C@H](OO)\C=C/CCCCCCCC([O-])=O" "CPD0-2065" "enalapril" ["Enalaprila", "Kinfil", "Bonuten", "Enalaprilum", "Renitek"] "C20H28N2O5" 376.452 0 "CCOC([C@@H](CCc1(ccccc1))N[C@@H](C)C(N2(CCC[C@@H](C(=O)O)2))=O)=O" @@ -3927,6 +3930,7 @@ "CPD0-2711" "benzamidoxime" [] null null 0 null "CPD0-2712" "ethidium bromide" [] "Br(C21N3H20)" 394.313 0 "CC[n+]2(c(c1(c(ccc(N)c1)c3(ccc(N)cc23)))c4(ccccc4)).[Br-]" "CPD0-2714" "bis(L-histidinate)nickel(II)" ["Ni(II)-(L-His)2", "bis(histidino)nickel"] "C12H18N6O4Ni" 369.012 2 "c1([nH]cnc(C[C@@H](C(O)=O)N)1).c2([nH]cnc(C[C@@H](C(O)=O)N)2).[Ni+2]" +"CPD0-2717" "N-acetyl-α-D-glucosaminyl-diphosphate-diacylglycerol" ["GlcNAc-PP-DAG"] null null -2 "CC(=O)N[C@@H]1([C@@H](O)[C@H](O)[C@@H](CO)O[C@H](OP(OP([O-])(=O)OC[C@H](COC([R1])=O)OC(=O)[R2])([O-])=O)1)" "CPD0-341" "S-succinyl-dihydrolipoamide" [] "C12H20NO4S2" 306.414 -1 "C(N)(=O)CCCC[C@H](SC(=O)CCC(=O)[O-])CCS" "CPD0-441" "fosmidomycin" [] "C4H9NO5P" 182.093 -1 "C(N(O)C=O)CCP([O-])(O)=O" "CPD0-621" "iron(III)-coprogen" ["ferric coprogen"] "C35H53N6O13Fe" 821.683 0 "CC(/CCO)=C\C(N(CCC[C@@H]1(NC(=O)[C@@H](NC(=O)1)CCCN([O-])C(=O)/C=C(C)/CCOC([C@@H](NC(=O)C)CCCN([O-])C(=O)/C=C(C)/CCO)=O))[O-])=O.[Fe+3]" @@ -3957,7 +3961,7 @@ "CPD0-944" "a rhamnosyl lipopolysaccharide" [] null null 0 "C[C@@H]1(O[C@H](O[R])[C@H](O)[C@H](O)[C@@H](O)1)" "CPD0-954" "1,4-naphthoquinone" ["1,4-naphthalenedione"] "C10H6O2" 158.156 0 "c1(cc2(c(ccc(c(cc1)2)=O)=O))" "CPD0-955" "2,3-dihydroxy-5-methyl-1,4-benzoquinone" [] "C7H5O4" 153.114 -1 "Cc1(cc(=O)c(O)c([O-])c(=O)1)" -"CPD0-963" "a 2'-O-methylcytosine in tRNA" [] null null -2 "CO[C@@H]2([C@H](OP(=O)(O[a tRNA])[O-])[C@@H](COP(=O)([O-])O[a tRNA])O[C@@H](n1(ccc(N)nc(=O)1))2)" +"CPD0-963" "a 2'-O-methylcytosine in tRNA" [] null null -2 "CO[C@@H]2([C@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](COP(=O)([O-])O[a transfer RNA])O[C@@H](n1(ccc(N)nc(=O)1))2)" "CPD0-967" "hexanediol 1,6-bisphosphate" ["hexanediol-1,6-diphosphate"] "C6H12O8P2" 274.104 -4 "C(OP(=O)([O-])[O-])CCCCCOP(=O)([O-])[O-]" "CPD0-971" "an α-limit dextrin" ["a glycogen phosphorylase-limit dextrin", "a glycogen phosphorylase-limited dextrin"] "C156H262O131" null 0 "C([C@H]%26(O[C@H](O[C@@H]1([C@H](O[C@@H]([C@@H]([C@@H](O)1)O)O[C@@H]%25([C@H](O[C@H](O[C@@H]%24([C@H](O[C@H](OC[C@@H]%22([C@@H](O[C@H]%21(O[C@@H]([C@@H](O[C@H]%20(O[C@@H]([C@@H](O[C@H]%19(O[C@@H]([C@@H](O[C@H]%18(O[C@@H]([C@@H](O[C@H]%17(O[C@@H]([C@@H](O[C@H]%16(O[C@@H]([C@@H](O[C@H]3(O[C@@H]([C@@H](O[C@H]2(O[C@@H]([C@H]([C@@H]([C@H]2O)O)O)CO))[C@@H]([C@H]3O)O)CO[C@H]%15(O[C@@H]([C@@H](O[C@H]%14(O[C@@H]([C@@H](O[C@H]%13(O[C@@H]([C@@H](O[C@H]8(O[C@@H]([C@@H](O[C@H]7(O[C@@H]([C@@H](O[C@H]6(O[C@@H]([C@@H](O[C@H]5(O[C@@H]([C@@H](O[C@H]4(O[C@@H]([C@@H](O)[C@@H]([C@H]4O)O)CO))[C@@H]([C@H]5O)O)CO))[C@@H]([C@H]6O)O)CO))[C@@H]([C@H]7O)O)CO))[C@@H]([C@H]8O)O)CO[C@H]%12(O[C@@H]([C@@H](O[C@H]%11(O[C@@H]([C@@H](O[C@H]%10(O[C@@H]([C@@H](O[C@H]9(O[C@@H]([C@@H](O)[C@@H]([C@H]9O)O)CO))[C@@H]([C@H]%10O)O)CO))[C@@H]([C@H]%11O)O)CO))[C@@H]([C@H]%12O)O)CO)))[C@@H]([C@H]%13O)O)CO))[C@@H]([C@H]%14O)O)CO))[C@@H]([C@H]%15O)O)CO)))[C@@H]([C@H]%16O)O)CO))[C@@H]([C@H]%17O)O)CO))[C@@H]([C@H]%18O)O)CO))[C@@H]([C@H]%19O)O)CO))[C@@H]([C@H]%20O)O)CO))[C@@H]([C@@H](O)%21)O)CO))[C@@H]([C@@H](O)[C@H](O%22)O[C@@H]%23([C@H](OC(O)[C@@H]([C@H]%23O)O)CO))O))[C@@H]([C@@H](O)%24)O)CO))[C@@H]([C@@H](O)%25)O)CO))CO))[C@@H]([C@@H](O)[C@@H]%26O)O))O" "CPD1G-124" "C52-α-meroacyl-adenylate" [] "C62H111N5O8P" 1085.561 -1 "CCCCCCCCCCCCCCCCCCC1(CC1CCCCCCCCCCC2(CC2CCCCCCCCCCCCCCCCCC(=O)OP(OC[C@H]5(O[C@@H](n3(c4(c(nc3)c(N)ncn4)))[C@H](O)[C@H](O)5))(=O)[O-]))" @@ -3999,7 +4003,7 @@ "Cyanophycin-aspartate" "[cyanophycin]-L-aspartate" ["[L-Asp(4-L-Arg)]n-L-Asp"] null null -2 "C(NC(N)=[NH2+])CC[C@@H](C([O-])=O)NC(C[C@@H](C(N[C@@H](CC(=O)N[C@H](C([O-])=O)CCCNC(N)=[NH2+])C(N[C@@H](CC(=O)N[C@H](C([O-])=O)CCCNC(N)=[NH2+])C(N[C@@H](CC(=O)N[C@H](C([O-])=O)CCCNC(N)=[NH2+])C(N[C@@H](CC([O-])=O)C([O-])=O)=O)=O)=O)=O)N[a protein])=O" "Cycic-Dipeptides" "a cyclic dipeptide" [] null null 0 "C1([R2])(NC(=O)C([R1])NC(=O)1)" "Cyclic-2-3-Nucleoside-Monophosphates" "a nucleoside cyclic 2',3'-monophosphate" [] null null -1 "C([C@@H]1([C@@H]2([C@H]([C@H]([a nucleobase])O1)OP(O2)([O-])=O)))O" -"Cyclic-2-3-Ribonucleoside-Monophosphates" "a ribonucleoside 2',3'-cyclic phosphate" ["a nucleoside 2',3'-cyclic phosphate"] null null -1 "C([C@@H]1([C@@H]2([C@H]([C@H]([a nucleobase])O1)OP(O2)([O-])=O)))O" +"Cyclic-2-3-Ribonucleoside-Monophosphates" "a ribonucleoside 2',3'-cyclic phosphate" ["a 2',3' -cyclic nucleotide", "2',3' -cyclic nucleotide phosphate", "a nucleoside 2',3'-cyclic phosphate"] null null -1 "C([C@@H]1([C@@H]2([C@H]([C@H]([a nucleobase])O1)OP(O2)([O-])=O)))O" "Cyclic-3-5-Nucleoside-Monophosphates" "a nucleoside cyclic 3',5'-monophosphate" [] null null -1 "C1(OP([O-])(=O)O[C@@H]2([C@@H]1O[C@H]([C@H]([R])2)[a nucleobase]))" "Cyclic-Alcohols" "a cyclic alcohol" [] null null 0 null "Cyclic-Amides" "a cyclic amide" [] null null 0 null @@ -4007,7 +4011,7 @@ "Cyclic-Dinucleotides" "a cyclic dinucleotide" [] null null 0 null "Cyclic-Ketones" "a cyclic ketone" [] null null 0 null "Cyclic-Monoterpene-Ketones" "a cyclic monoterpene ketone" [] null null 0 null -"Cyclic-N6-threonylcarbamoyl-A37-tRNAs" "a cyclic N6-L-threonylcarbamoyladenosine 37 in tRNA" ["ct6A37 tRNA"] null null -2 "CC(O)C1(C(=O)OC(/N1)=N/c2(ncnc3(n(cnc23)[C@@H]4(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)4))))" +"Cyclic-N6-threonylcarbamoyl-A37-tRNAs" "a cyclic N6-L-threonylcarbamoyladenosine 37 in tRNA" ["ct6A37 tRNA"] null null -2 "CC(O)C1(C(=O)OC(/N1)=N/c2(ncnc3(n(cnc23)[C@@H]4(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)4))))" "Cyclic-Nucleoside-Monophosphates" "a cyclic mononucleotide" [] null null 0 null "Cyclic-Nucleotides" "a cyclic nucleotide" [] null null 0 null "Cyclic-Peptides" "a cyclic peptide" [] null null 0 null @@ -4031,11 +4035,11 @@ "Cysteine-Desulfurase-L-cysteine" "an [L-cysteine desulfurase]-L-cysteine" [] null null 0 "C(=O)([an [L-cysteine desulfurase]])[C@@H](N[an [L-cysteine desulfurase]])CS" "cystine" "cystine" ["3,3'-disulfanediylbis(2-aminopropanoic acid)"] "C6H12N2O4S2" 240.292 0 "C(C([NH3+])C(=O)[O-])SSCC([NH3+])C([O-])=O" "CYTIDINE" "cytidine" [] "C9H13N3O5" 243.219 0 "C(O)[C@@H]2([C@H]([C@H]([C@H](n1(ccc(N)nc(=O)1))O2)O)O)" -"Cytidine-32-tRNAs" "a cytidine 32 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(N)nc(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" +"Cytidine-32-tRNAs" "a cytidine 32 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(N)nc(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" "Cytidine-34-tRNAIle2" "a cytidine34 in tRNAIle2" [] null null -2 "C(OP(=O)([O-])O[tRNAIle2])[C@H]2(O[C@@H](n1(ccc(N)nc(=O)1))[C@H](O)[C@H](OP(=O)(O[tRNAIle2])[O-])2)" "Cytidine-34-tRNAmet" "a cytidine34 in [elongator tRNAmet]" ["[elongator tRNAmet]-cytidine34"] null null -2 "C(OP(=O)([O-])O[elongator tRNAMet])[C@H]2(O[C@@H](n1(ccc(N)nc(=O)1))[C@H](O)[C@H](OP(=O)(O[elongator tRNAMet])[O-])2)" -"Cytidine-34-tRNAs" "a cytidine34 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(N)nc(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"Cytidine-56-tRNAs" "a cytidine 56 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(N)nc(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" +"Cytidine-34-tRNAs" "a cytidine34 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(N)nc(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"Cytidine-56-tRNAs" "a cytidine 56 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(N)nc(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" "Cytidine-In-Single-Stranded-DNAs" "a cytosine in single-stranded DNA" [] null null -2 "C(OP(=O)([O-])O[a single stranded DNA])[C@H]2(O[C@@H](n1(c(nc(cc1)N)=O))[C@H](O)[C@H](OP(=O)(O[a single stranded DNA])[O-])2)" "Cytidine4-tRNAGly-GCC" "a cytidine4 in tRNAGly" [] null null -2 "C(OP(=O)([O-])O[a tRNAGly])[C@H]2(O[C@@H](n1(ccc(N)nc(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNAGly])[O-])2)" "Cytochrome-c-arginines" "[cytochrome c]-L-arginine" [] null null 1 "C(NC(N)=[NH2+])CC[C@@H](C([a c-type cytochrome])=O)N[a c-type cytochrome]" @@ -4046,16 +4050,16 @@ "Cytochrome-c-S-methyl-methionine" "a [cytochrome c]-S-methyl-methionine" [] null null 1 "C[S+](C)CC[C@@H](C([a protein])=O)N[a protein]" "Cytokinins" "a cytokinin" [] null null 0 null "CYTOSINE" "cytosine" ["4-amino-2-oxo-1,2-dihydropyrimidine", "C"] "C4H5N3O" 111.103 0 "c1([nH]c(=O)nc(N)c1)" -"Cytosine-32-In-tRNAs" "a cytosine32 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(c(nc(cc1)N)=O))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" +"Cytosine-32-In-tRNAs" "a cytosine32 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(c(nc(cc1)N)=O))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" "Cytosine-32-In-tRNAs-Sers" "a cytosine32 in tRNASer" [] null null -2 "C(OP(=O)([O-])O[a tRNAser])[C@H]2(O[C@@H](n1(c(nc(cc1)N)=O))[C@H](O)[C@H](OP(=O)(O[a tRNAser])[O-])2)" "Cytosine-32-tRNA-Thrs" "a cytosine32 in tRNAthr" [] null null -2 "C(OP(=O)([O-])O[a tRNAThr])[C@H]2(O[C@@H](n1(c(nc(cc1)N)=O))[C@H](O)[C@H](OP(=O)(O[a tRNAThr])[O-])2)" -"Cytosine-34-tRNA-Precursors" "a cytosine34 in tRNA precursor" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(N)nc(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"Cytosine-38-in-tRNAs" "a cytosine38 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(c(nc(cc1)N)=O))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"Cytosine-40-tRNA-Precursors" "a cytosine40 in tRNA precursor" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(N)nc(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"Cytosine-48-tRNAs" "a cytosine48 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(c(nc(cc1)N)=O))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"Cytosine-49-tRNAs" "a cytosine49 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(N)nc(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" +"Cytosine-34-tRNA-Precursors" "a cytosine34 in tRNA precursor" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(N)nc(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"Cytosine-38-in-tRNAs" "a cytosine38 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(c(nc(cc1)N)=O))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"Cytosine-40-tRNA-Precursors" "a cytosine40 in tRNA precursor" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(N)nc(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"Cytosine-48-tRNAs" "a cytosine48 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(c(nc(cc1)N)=O))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"Cytosine-49-tRNAs" "a cytosine49 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(N)nc(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" "Cytosine-6666-In-Apolipoprotein-B-mRNAs" "a cytosine6666 in apolipoprotein B mRNA" [] null null -2 "C(OP(=O)([O-])O[an apolipoprotein B mRNA])[C@H]2(O[C@@H](n1(c(nc(cc1)N)=O))[C@H](O)[C@H](OP(=O)(O[an apolipoprotein B mRNA])[O-])2)" -"Cytosine-8-In-tRNAs" "a cytosine8 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(c(nc(cc1)N)=O))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" +"Cytosine-8-In-tRNAs" "a cytosine8 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(c(nc(cc1)N)=O))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" "Cytosine-Nucleotides" "a cytosine nucleotide" [] null null 0 null "Cytosine2278-in-25S-rRNA" "a cytosine2278 in 25S rRNA" [] null null -2 "C(OP(=O)([O-])O[a 25S rRNA])[C@H]2(O[C@@H](n1(c(nc(cc1)N)=O))[C@H](O)[C@H](OP(=O)(O[a 25S rRNA])[O-])2)" "Cytosine2870-in-25S-rRNA" "a cytosine2870 in 25S rRNA" [] null null -2 "C(OP(=O)([O-])O[a 25S rRNA])[C@H]2(O[C@@H](n1(c(nc(cc1)N)=O))[C@H](O)[C@H](OP(=O)(O[a 25S rRNA])[O-])2)" @@ -4099,7 +4103,7 @@ "D-fructopyranose-1-phosphate" "D-fructopyranose 1-phosphate" [] "C6H11O9P" 258.121 -2 "C(OP([O-])(=O)[O-])C1(O)([C@@H](O)[C@H](O)[C@H](O)CO1)" "D-fructose-1-phosphate" "D-fructose 1-phosphate" [] null null 0 null "D-Fucoses" "D-fucose" ["6-deoxy-D-galactose"] "C6H12O5" 164.158 0 "C[C@H]([C@H](O)[C@H](O)[C@H](C=O)O)O" -"D-Gal-NAc--Glycoproteins" "a Tn antigen" ["N-acetyl-α-D-glucosaminyl-glycopeptide", "N-acetyl-α-D-glucosaminyl-[protein]", "an N-acetyl-α-D-galactosalaminyl-[glycoprotein]"] null null 0 "CC(=O)N[C@@H]1([C@@H](O)[C@@H](O)[C@@H](CO)O[C@@H]1OC([R])[C@@H](C(=O)[a protein])N[a protein])" +"D-Gal-NAc--Glycoproteins" "N-acetyl-α-galactosalaminyl-[protein L-seine/L-threonine]" ["N-acetyl-α-galactosalaminyl-glycopeptide", "N-acetyl-α-galactosalaminyl-[protein]", "an N-acetyl-α-D-galactosalaminyl-[glycoprotein]", "a Tn antigen"] null null 0 "CC(=O)N[C@@H]1([C@@H](O)[C@@H](O)[C@@H](CO)O[C@@H]1OC([R])[C@@H](C(=O)[a protein])N[a protein])" "D-GALACTARATE" "galactarate" ["D-galactarate", "galactaric acid", "mucic acid", "meso-galactarate", "mucate"] "C6H8O8" 208.124 -2 "C(=O)([O-])[C@H](O)[C@@H](O)[C@@H](O)[C@H](O)C(=O)[O-]" "D-galactofuranose" "D-galactofuranose" [] "C6H12O6" 180.157 0 "C(O)[C@@H](O)[C@H]1([C@H](O)[C@@H](O)C(O1)O)" "D-GALACTONATE" "D-galactonate" ["galactonate"] "C6H11O7" 195.149 -1 "C(O)[C@@H](O)[C@H](O)[C@H](O)[C@@H](O)C(=O)[O-]" @@ -4164,6 +4168,7 @@ "D-Rhamnose" "D-rhamnose" [] null null 0 null "D-Ribofuranose" "D-ribofuranose" [] "C5H10O5" 150.131 0 "C(O)[C@@H]1([C@H]([C@H](C(O)O1)O)O)" "D-Ribopyranose" "D-ribopyranose" [] "C5H10O5" 150.131 0 "C1(OC([C@@H]([C@@H]([C@@H]1O)O)O)O)" +"D-Ribose" "D-ribose" ["ribose"] "C5H10O5" 150.131 0 "C(=O)[C@H](O)[C@H](O)[C@H](O)CO" "D-RIBULOFURANOSE" "D-ribulofuranose" [] "C5H10O5" 150.131 0 "C(O)C1(O)([C@H](O)[C@H](O)CO1)" "D-RIBULOSE" "D-ribulose" ["D-erythro-pentulose", "D-erythropentulose", "erythropentulose"] "C5H10O5" 150.131 0 "C(O)[C@@H](O)[C@@H](O)C(=O)CO" "D-RIBULOSE-1-P" "D-ribulose 1-phosphate" ["D-ribulose-1-P"] "C5H9O8P" 228.095 -2 "C(OP([O-])(=O)[O-])C(=O)[C@H](O)[C@H](O)CO" @@ -4269,7 +4274,7 @@ "DI-H-URACIL" "5,6-dihydrouracil" ["dihydrouracil", "DI-H-uracil"] "C4H6N2O2" 114.104 0 "C1(NC(CCN1)=O)=O" "DI-N-ACETYL-BETA-D-GLUCOSAMINYL" "N-acetyl-β-D-glucosaminyl-1,2-α-D-mannosyl-1,3-(N-acetyl-β-D-glucosaminyl-1,2-α-D-mannosyl-1,6)-β-D-mannosyl-1,4-N-acetyl-β-D-glucosaminyl-R" [] null null 0 "CC(N[C@H]1([C@@H](O[C@@H]([C@H]([C@@H]1O)O[C@H]2([C@H]([C@H]([C@@H]([C@H](O2)CO[C@@H]3([C@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O[C@H]4([C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)NC(=O)C)))O)O[C@@H]5([C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@H]6([C@@H]([C@H]([C@@H]([C@H](O6)CO)O)O)NC(=O)C)))O))CO)O[a glycoprotein]))=O" "Di-Rhamnolipids" "a di-rhamnolipid" [] null null -1 "C([R1])[C@H](CC(=O)[O-])OC(=O)C[C@@H](C[R2])O[C@H]2([C@H](O[C@H]1([C@H](O)[C@H](O)[C@@H](O)[C@H](C)O1))[C@H](O)[C@@H](O)[C@H](C)O2)" -"Di-trans-poly-cis-polyprenyl-PP" "a di-trans, poly-cis-polyisoprenyl diphosphate" [] null null 0 null +"Di-trans-poly-cis-polyprenyl-PP" "a di-trans, poly-cis-polyisoprenyl diphosphate" [] null null -3 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/[R]CC(/C)=C/CCC(/C)=C/COP(=O)([O-])OP(=O)([O-])[O-]" "DIACETYL" "diacetyl" ["2,3-butanedione", "biacetyl", "dimethylglyoxal", "2,3-diketobutane", "2,3-dioxobutane", "butadione", "dimethyl diketone", "butanedione"] "C4H6O2" 86.09 0 "CC(C(C)=O)=O" "DIACETYLCHITOBIOSE-6-PHOSPHATE" "N,N'-diacetylchitobiose 6'-phosphate" ["diacetylchitobiose 6-phosphate"] "C16H27N2O14P" 502.368 -2 "CC(=O)N[C@H]1(C(O)O[C@H](CO)[C@H]([C@H](O)1)O[C@@H]2(O[C@@H]([C@@H](O)[C@H](O)[C@@H](NC(=O)C)2)COP([O-])(=O)[O-]))" "diacyl-3-Glc-16-Glc-16-Glc-glycerol" "a 1,2-diacyl-3-O-[β-D-glucopyranosyl-(1->6)-O-β-D-glucopyranosyl-(1->6)-β-D-glucopyranosyl]-sn-glycerol" ["triglucosyl-1,2 diacylglycerol"] null null 0 "C(O)[C@H]3(O[C@@H](OC[C@H]2(O[C@@H](OC[C@H]1(O[C@@H](OC[C@@H](COC(=O)[R1])OC(=O)[R2])[C@H](O)[C@@H](O)[C@H](O)1))[C@H](O)[C@@H](O)[C@H](O)2))[C@H](O)[C@@H](O)[C@H](O)3)" @@ -4345,7 +4350,7 @@ "DIHYDROXY-BUTANONE-P" "1-deoxy-L-glycero-tetrulose 4-phosphate" ["3,4-dihydroxy-2-butanone-4-phosphate", "tetrolose phosphate", "3,4-dihydroxy-2-butanone-4-P", "L-3,4-dihydroxybutan-2-one-4-phosphate"] "C4H7O6P" 182.069 -2 "CC(=O)[C@H](O)COP([O-])(=O)[O-]" "DIHYDROXYACETONE" "dihydroxyacetone" ["glycerone", "1,3-dihydroxyacetone", "dihydroxy-acetone"] "C3H6O3" 90.079 0 "C(C(CO)=O)O" "DIHYDROXYNAPHTHOATE" "1,4-dihydroxy-2-naphthoate" ["DHNA", "2-carboxy-1,4-naphthoquinol"] "C11H7O4" 203.174 -1 "C([O-])(=O)c1(c(O)c2(c(c(O)c1)cccc2))" -"DIHYDROXYPENTANEDIONE" "autoinducer 2" ["(4S)-4,5-dihydroxy-2,3-pentanedione", "(4S)-4,5-dihydroxypentane-2,3-dione"] "C5H8O4" 132.116 0 "CC(C([C@H](CO)O)=O)=O" +"DIHYDROXYPENTANEDIONE" "(4S)-4,5-dihydroxypentane-2,3-dione" ["autoinducer 2", "(4S)-4,5-dihydroxy-2,3-pentanedione"] "C5H8O4" 132.116 0 "CC(C([C@H](CO)O)=O)=O" "Dihydroxypteridines" "a dihydroxypteridine" ["a 2,4-dihydroxypteridine"] null null 0 "c1([R1])(nc2(c(nc([R2])1)nc(O)nc(O)2))" "DIISOPROPYL-FLUOROPHOSPHATE" "diisopropyl fluorophosphate" [] "C6H14O3FP" 184.147 0 "CC(C)OP(=O)(F)OC(C)C" "DIISOPROPYL-PHOSPHATE" "diisopropyl phosphate" ["2-(hydroxy-isopropoxy-phosphinoyl)oxypropane"] "C6H14O4P" 181.148 -1 "CC(C)OP([O-])(=O)OC(C)C" @@ -4394,7 +4399,7 @@ "DITHIO-NITROBENZOATE" "5,5'-dithio-bis-2-nitrobenzoate" ["dithionitrobenzoic acid", "dithionitrobenzoate", "DTNB", "5-(3-carboxy-4-nitro-phenyl)disulfanyl-2-nitro-benzoic acid", "5'-dithio-bis(2-nitrobenzoic acid)", "5,5'-dithio-bis(2-nitrobenzoic acid)"] "C14H6N2O8S2" 394.33 -2 "c1(cc(c(cc1SSc2(ccc(c(c2)C(=O)[O-])[N+]([O-])=O))C(=O)[O-])[N+]([O-])=O)" "DITHIOTHREITOL" "L-dithiothreitol" ["L-DTT", "L-threo-1,4-dimercapto-2,3-butanediol", "L-1,4-disulfanylbutane-2,3-diol", "L-1,4-dithiothreitol"] "C4H10O2S2" 154.242 0 "C(S)[C@H](O)[C@@H](O)CS" "DITP" "dITP" ["deoxyinosine triphosphate"] "C10H11N4O13P3" 488.137 -4 "C(OP(=O)([O-])OP(=O)([O-])OP(=O)([O-])[O-])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]cn2)))C[C@H](O)3)" -"Ditrans-polycis-polyprenols" "a di-trans, poly-cis-polyprenol" [] "C80H130O" 1107.906 0 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CO" +"Ditrans-polycis-polyprenols" "a di-trans, poly-cis-polyprenol" [] null null 0 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/[R]CC(/C)=C/CCC(/C)=C/CO" "Divalent-Inorganic-Cations" "a divalent inorganic cation" [] null null 0 null "DL-12-Propanediol" "propane-1,2-diol" ["1,2-PDO", "propylene glycol", "1,2-propanediol"] "C3H8O2" 76.095 0 "CC(O)CO" "DL-3-HYDROXYASPARTATE" "3-hydroxyaspartate" [] "C4H6NO5" 148.095 -1 "C([NH3+])(C(=O)[O-])C(O)C(=O)[O-]" @@ -4431,9 +4436,9 @@ "DNA-With-Hypoxanthines" "a hypoxanthine in DNA" ["a 2'-deoxyinosine in DNA"] null null -2 "C(OP(=O)([O-])O[a deoxyribonucleic acid])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]cn2)))C[C@H](OP(=O)(O[a deoxyribonucleic acid])[O-])3)" "DNA-With-Recognition-Site" "DNA containing a recognition site" [] null null 0 null "DODECANOATE" "laurate" ["n-dodecanoic acid", "dodecanoic acid", "n-dodecanoic acid", "lauric acid", "tin II 2-ethylhexanoate", "dodecanoate"] "C12H23O2" 199.312 -1 "CCCCCCCCCCCC([O-])=O" -"DOLICHOL" "a dolichol" ["a ditrans,polycis-dolichol", "4-{alpha-[(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]poly[(2Z)-2-methylbut-2-ene-1,4-diyl]}-3-methylbutan-1-ol"] "C80H132O" 1109.922 0 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(CCO)C" -"DOLICHOL-GROUP" "dolichol-group" ["dolichol"] "C80H132" 1093.923 0 "CC[C@@H](C)CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC/C=C(C)/CC/C=C(C)/CCC=C(C)C" -"DOLICHOLP" "a dolichyl phosphate" ["a a dolichol-phosphate", "a dolychol phosphate", "a dolichol phosphate", "a dolichyl monophosphate", "a dolichol monophosphate"] "C80H131O4P" 1187.886 -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(CCOP([O-])([O-])=O)C" +"DOLICHOL" "a dolichol" ["a ditrans,polycis-dolichol", "4-{alpha-[(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]poly[(2Z)-2-methylbut-2-ene-1,4-diyl]}-3-methylbutan-1-ol"] null null 0 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/[R]CC(/C)=C/CCC(C)CCO" +"DOLICHOL-GROUP" "dolichol-group" ["dolichol"] null null 0 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/[R]CC(/C)=C/CCC(C)CC" +"DOLICHOLP" "a dolichyl phosphate" ["a a dolichol-phosphate", "a dolychol phosphate", "a dolichol phosphate", "a dolichyl monophosphate", "a dolichol monophosphate"] null null -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/[R]CC(/C)=C/CCC(C)CCOP(=O)([O-])[O-]" "Dolichyl-phosphooligosaccharides" "a dolichyl phosphooligosaccharide" [] null null -1 "CC(C)CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(CCOP(=O)(O[R])[O-])C" "Donor-H1" "a reduced one electron carrier" ["a reduced unknown one electron donor", "A(H)", "a reduced unknown one electron acceptor"] null null 0 "[an oxidized electron carrier]" "Donor-H2" "a reduced two electron carrier" ["a reduced unknown two electron donor", "A(H2)", "a reduced unknown two electron acceptor"] null null 0 "[an oxidized electron carrier]" @@ -4529,8 +4534,8 @@ "ETHYLACETIMIDATE" "ethylacetimidate" [] "C4H10NO" 88.129 1 "CCOC(C)=[NH2+]" "ETHYLENE-CMPD" "ethene" ["olefiant gas", "elayl", "ethylene"] "C2H4" 28.054 0 "C=C" "ETOH" "ethanol" ["absolute alcohol", "alcohol", "EtOH", "eth", "ethyl alcohol", "grain alcohol"] "C2H6O" 46.069 0 "CCO" -"ETR-Quinols" "an electron-transfer quinol" [] null null 0 "c1([R1])(c([R4])c(O)c([R3])c([R2])c(O)1)" -"ETR-Quinones" "an electron-transfer quinone" [] null null 0 "c1([R4])(c([R3])c(=O)c([R3])c([R1])c(=O)1)" +"ETR-Quinols" "an electron-transfer quinol" ["a respiratory quinol"] null null 0 "c1([R1])(c([R4])c(O)c([R3])c([R2])c(O)1)" +"ETR-Quinones" "an electron-transfer quinone" ["a respiratory quinone"] null null 0 "c1([R4])(c([R3])c(=O)c([R3])c([R1])c(=O)1)" "ETR-Semiquinones" "an electron-transfer semiquinone" [] null null 0 "c1([R4])(c(O)c([R3])c([R2])c(O)c([R1])1)" "Even-Saturated-Fatty-Acyl-CoA" "an even numbered straight chain 2,3,4-saturated fatty acyl CoA" [] null null -4 "C([R])CC(SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(=O)(OP(=O)(OC[C@@H]1([C@@H](OP([O-])(=O)[O-])[C@@H](O)[C@@H](O1)n3(c2(c(c(N)ncn2)nc3))))[O-])[O-])=O" "Even-Straight-Chain-234-Sat-FA" "an even numbered straight chain 2,3,4-saturated fatty acid" [] null null -1 "C([R])CCC([O-])=O" @@ -4887,22 +4892,22 @@ "Guanidines" "a guanidine" [] null null 0 null "Guanido-Compounds" "a guanido compound" [] null null 0 null "GUANINE" "guanine" ["G"] "C5H5N5O" 151.127 0 "c2(nc1(c(nc([nH]c(=O)1)N)[nH]2))" -"Guanine10-in-tRNA" "a guanine10 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" -"Guanine15-in-tRNA-with-GUN-anticodon" "a guanine15 in archaeal tRNA" ["guanine at position 15 of an archaeal tRNA"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" +"Guanine10-in-tRNA" "a guanine10 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" +"Guanine15-in-tRNA-with-GUN-anticodon" "a guanine15 in archaeal tRNA" ["guanine at position 15 of an archaeal tRNA"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" "Guanine1575-in-18StRNAs" "a guanine1575 in 18S tRNA" [] null null -2 "C(OP(=O)([O-])O[an 18S rRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[an 18S rRNA])[O-])3)" "Guanine2535-in-23S-rRNA" "a guanine2535 in 23S rRNA" [] null null -2 "C(OP(=O)([O-])O[a 23S rRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a 23S rRNA])[O-])3)" -"Guanine26-Guanine27-in-tRNAs" "a guanine26/guanine27 in tRNA" [] null null -3 "C(OP(=O)([O-])O[a tRNA])[C@H]6(O[C@@H](n1(cnc2(c1nc(N)[nH]c(=O)2)))[C@H](O)[C@H](OP([O-])(=O)OC[C@H]5(O[C@@H](n3(cnc4(c3nc(N)[nH]c(=O)4)))[C@H](O)[C@H](OP([O-])(=O)O[a tRNA])5))6)" -"Guanine26-in-tRNA" "a guanine26 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" -"Guanine34-in-tRNA-with-GUN-anticodon" "guanine34 in tRNA with GUN anticodon" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" -"Guanine34-in-tRNAs" "a guanine34 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" -"Guanine37-in-tRNA" "a guanine37 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" +"Guanine26-Guanine27-in-tRNAs" "a guanine26/guanine27 in tRNA" [] null null -3 "C(OP(=O)([O-])O[a transfer RNA])[C@H]6(O[C@@H](n1(cnc2(c1nc(N)[nH]c(=O)2)))[C@H](O)[C@H](OP([O-])(=O)OC[C@H]5(O[C@@H](n3(cnc4(c3nc(N)[nH]c(=O)4)))[C@H](O)[C@H](OP([O-])(=O)O[a transfer RNA])5))6)" +"Guanine26-in-tRNA" "a guanine26 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" +"Guanine34-in-tRNA-with-GUN-anticodon" "guanine34 in tRNA with GUN anticodon" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" +"Guanine34-in-tRNAs" "a guanine34 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" +"Guanine37-in-tRNA" "a guanine37 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" "Guanine37-in-tRNAPhe" "guanine37 in tRNAPhe" [] null null -2 "C(OP(=O)([O-])O[a tRNAPhe])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a tRNAPhe])[O-])3)" -"Guanine46-in-tRNA" "a guanine46 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" -"Guanine6-in-tRNA" "a guanine6 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" -"Guanine9-in-tRNA" "a guanine9 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" +"Guanine46-in-tRNA" "a guanine46 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" +"Guanine6-in-tRNA" "a guanine6 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" +"Guanine9-in-tRNA" "a guanine9 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" "GUANOSINE" "guanosine" ["nucleoside Q", "guanine riboside", "guanine-9-β-D-ribofuranoside"] "C10H13N5O5" 283.243 0 "C(O)[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](O)3)" -"Guanosine-2922-in-27S-pre-rRNA" "a guanosine2922 in 27S pre-rRNA" [] null null -2 "C(OP(=O)([O-])O[rRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[rRNA])[O-])3)" -"guanosine-34-tRNAs" "a guanosine34 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" +"Guanosine-2922-in-27S-pre-rRNA" "a guanosine2922 in 27S pre-rRNA" [] null null -2 "C(OP(=O)([O-])O[a ribosomal RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a ribosomal RNA])[O-])3)" +"guanosine-34-tRNAs" "a guanosine34 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" "GUANOSINE-5DP-3DP" "ppGpp" ["guanosine tetraphosphate", "guanosine 5'-diphosphate,3'-diphosphate", "guanosine 3',5'-bispyrophosphate", "guanosine 3',5'-bis(diphosphate)", "guanosine 3'-diphosphate 5'-diphosphate", "magic spot", "guanosine-5',3'-tetraphosphate"] "C10H11N5O17P4" 597.115 -6 "C(OP(=O)([O-])OP(=O)([O-])[O-])[C@H]3(O[C@@H](n1(cnc2(c(=O)[nH]c(N)nc12)))[C@H](O)[C@H](OP([O-])(OP([O-])([O-])=O)=O)3)" "GUANOSINE_TETRAPHOSPHATE" "guanosine tetraphosphate" [] "C10H12N5O17P4" 598.123 -5 "C(OP(=O)([O-])OP(=O)(OP([O-])(OP([O-])(=O)[O-])=O)[O-])[C@H]3(O[C@@H](n1(cnc2(c(=O)[nH]c(N)nc12)))[C@H](O)[C@H](O)3)" "Guloses" "gulose" [] null null 0 null @@ -5028,7 +5033,7 @@ "HYDROQUINONE" "hydroquinone" ["1,4-benzenediol", "benzene-1,4-diol"] "C6H6O2" 110.112 0 "c1(cc(O)ccc(O)1)" "HYDROQUINONE-O-BETA-D-GLUCOPYRANOSIDE" "arbutin" ["hydroquinone-O-β-D-glucopyranoside", "p-hydroxyphenyl β-D-glucopyranoside", "Ursin", "Uvasol", "p-hydroxyphenyl β-D-glucoside"] "C12H16O7" 272.254 0 "c1(cc(ccc(O)1)O[C@@H]2(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](O)2))" "Hydroxamate-siderophores" "a hydroxamate siderophore" [] null null 0 null -"Hydroxamates" "a hydroxamate" [] null null 0 "C(=O)(NO)[R]" +"Hydroxamates" "a hydroxamate" ["a hydroxamic acid"] null null 0 "C(=O)(NO)[R]" "Hydroxides" "a hydroxide" [] null null 0 null "HYDROXY-ACYL-COA" "a hydroxyacyl-CoA" [] null null -4 "CC(C)([C@@H](O)C(=O)NCCC(=O)NCCSC(=O)[R])COP(=O)(OP(=O)(OC[C@H]1(O[C@H]([C@@H]([C@@H]1OP([O-])(=O)[O-])O)n3(c2(c(c(N)ncn2)nc3))))[O-])[O-]" "Hydroxy-Amino-Acids" "a hydroxylated amino acid" ["a hydroxy amino acid"] null null 0 null @@ -5045,7 +5050,7 @@ "Hydroxyflavones" "a hydroxyflavone" [] null null 0 null "Hydroxyflavonones" "a hydroxyflavonone" [] null null 0 null "Hydroxyketones" "a hydroxyketone" [] null null 0 null -"HYDROXYL-GROUP" "a hydroxyl group" [] "HO" 17.007 -1 "[OH-]" +"HYDROXYL-GROUP" "a hydroxyl group" [] null null 0 "O[R]" "HYDROXYLAMINE" "hydroxylamine" ["NH2OH"] "H3NO" 33.03 0 "NO" "Hydroxylaminoaromatic-Compounds" "a hydroxylaminoaromatic compound" [] null null 0 null "HYDROXYMALONATE" "2-hydroxymalonate" ["tartronate", "hydroxymalonate", "tartronic acid"] "C3H2O5" 118.046 -2 "C([O-])(=O)C(O)C([O-])=O" @@ -5066,7 +5071,7 @@ "HYPOXANTHINE" "hypoxanthine" [] "C5H4N4O" 136.113 0 "c1([nH]c2(c(n1)nc[nH]c(=O)2))" "Hypoxanthine-37-In-tRNA-Alanines" "a hypoxanthine37 in tRNAala" [] null null -2 "C(OP(=O)([O-])O[a tRNAAla])[C@H]3(O[C@@H](N1(C2(\C(\N=C/1)C(=O)\N=C/N=2)))[C@H](O)[C@H](OP(=O)(O[a tRNAAla])[O-])3)" "Hypoxanthine-In-Double-Stranded-RNAs" "a hypoxanthine in double-stranded RNA" [] null null -2 "C(OP(=O)([O-])O[a double-stranded RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]cn2)))[C@H](O)[C@H](OP(=O)(O[a double-stranded RNA])[O-])3)" -"Hypoxanthine-In-tRNAs-34s" "a hypoxanthine 34 in tRNAs" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]cn2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" +"Hypoxanthine-In-tRNAs-34s" "a hypoxanthine 34 in tRNAs" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]cn2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" "Hypoxanthine-Nucleotides" "a hypoxanthine nucelotide" [] null null 0 null "Ibuprofen" "ibuprofen" ["(4-isobutylphenyl)-α-methylacetate", "Motrin", "α-(4-isobutylphenyl)propionate", "2-(4-isobutylphenyl)propanoate", "α-methyl-4-(2-methylpropyl)benzeneacetate", "Advil", "Nurofen", "Nuprin"] "C13H17O2" 205.276 -1 "CC(C)Cc1(ccc(C(C)C([O-])=O)cc1)" "Icosanoids" "an icosanoid" ["an eicosanoid"] null null 0 null @@ -5084,7 +5089,7 @@ "Imidazopyrimidines" "an imidazopyrimidine" [] null null 0 null "Imides" "an imide" [] null null 0 "C(=O)([R1])N([R2])C(=O)[R3]" "Imines" "an imine" [] null null 0 "C([R3])([R1])=N[R2]" -"IMINO-GROUP" "an imino group" [] "CH2N" 28.033 -1 "[C-2]=[NH2+]" +"IMINO-GROUP" "an imino group" [] null null 1 "[R]=[NH2+]" "IMINOASPARTATE" "2-iminosuccinate" ["2-iminobutanedioate", "α-iminosuccinate", "iminoaspartate"] "C4H3NO4" 129.072 -2 "C(=O)([O-])CC(C(=O)[O-])=N" "Immunoglobulin-G-Glycopeptides" "an immunoglobulin G glycopeptide" [] null null 0 null "Immunoglobulin-G-Glycopeptides-fragments" "fragments of immunoglobuline G glycopeptide" [] null null 0 null @@ -5101,7 +5106,6 @@ "INDOLE_LACTATE" "indole-3-lactate" ["indole lactate", "(indol-3-yl)lactate", "indolelactic acid", "indolelactate", "Indole-3-lactic acid"] "C11H10NO3" 204.205 -1 "c1(ccc2(c(c1)c(CC(O)C(=O)[O-])c[nH]2))" "INDOLE_PYRUVATE" "(indol-3-yl)pyruvate" ["indole-pyr", "indolepyruvic acid", "indole-3-pyruvate", "indolepyruvate", "3-(indol-3-yl)pyruvate", "3-indole-2-oxopropanoate", "IPA", "indole-3-pyruvic acid"] "C11H8NO3" 202.189 -1 "C([O-])(=O)C(=O)Cc1(c[nH]c2(ccccc12))" "Indolocarbazoles" "an indolocarbazole alkaloid" [] null null 0 null -"Inhibitors" "an inhibitor" [] null null 0 null "Inorganic-Anions" "an inorganic anion" [] null null 0 null "Inorganic-Cations" "an inorganic cation" [] null null 0 null "Inorganic-Compounds" "an inorganic compound" [] null null 0 null @@ -5180,7 +5184,7 @@ "Kdo-2-4-Kdo-2-6-Lipid-IVA" "an α-Kdo-(2->4)-α-Kdo-(2->6)-[lipid IVA]" ["a (Kdo)2-[lipid IVA]", "3-deoxy-α-D-manno-oct-2-ulopyranosyl-(2->4)-3-deoxy-α-D-manno-oct-2-ulopyranosyl-(2->6)-2-deoxy-2-{[(3R)-3-hydroxyacyl]amino}-3-O-[(3R)-3-hydroxyacyl]-4-O-phospho-β-D-glucopyranosyl-(1->6)-2-deoxy-3-O-[(3R)-3-hydroxyacyl]-2-{[(3R)-3-hydroxyacyl]amino}-1-O-phosphono-α-D-glucopyranose"] null null -6 "C(O)[C@@H](O)[C@@H]1([C@H](O)[C@H](O)C[C@@](O1)(C(=O)[O-])O[C@H]4([C@H]([C@@H]([C@H](O)CO)O[C@](C(=O)[O-])(OC[C@H]3(O[C@@H](OC[C@@H]2([C@@H](O)[C@H](OC(=O)C[C@H](O)C[R3])[C@@H](NC(=O)C[C@H](O)C[R4])[C@@H](OP([O-])([O-])=O)O2))[C@H](NC(=O)C[C@H](O)C[R2])[C@@H](OC(=O)C[C@H](O)C[R1])[C@@H]3OP([O-])([O-])=O))C4)O))" "Kdo-2-6-Lipid-IVA" "an α-Kdo-(2→6)-[lipid IVA]" ["a 3-deoxy-D-manno-octulosonyl-[lipid IVA]", "3-deoxy-α-D-manno-oct-2-ulopyranosyl-(2->6)-2-deoxy-2-{[(3R)-3-hydroxyacyl]amino}-3-O-[(3R)-3-hydroxyacyl]-4-O-phospho-β-D-glucopyranosyl-(1->6)-2-deoxy-3-O-[(3R)-3-hydroxyacyl]-2-{[(3R)-3-hydroxyacyl]amino}-1-O-phosphono-α-D-glucopyranose", "(KDO)-lipid IVA"] null null -5 "C(O)[C@@H](O)[C@@H]3([C@H](O)[C@H](O)C[C@@](C(=O)[O-])(OC[C@H]2(O[C@@H](OC[C@@H]1([C@@H](O)[C@H](OC(C[C@H](O)C[R3])=O)[C@@H](NC(=O)C[C@H](O)C[R4])[C@@H](OP([O-])([O-])=O)O1))[C@H](NC(C[C@H](O)C[R2])=O)[C@@H](OC(=O)C[C@H](O)C[R1])[C@@H]2OP([O-])(=O)[O-]))O3)" "KDO-8P" "3-deoxy-D-manno-octulosonate 8-phosphate" ["3-deoxy-D-manno-octulosonate 8-P", "2-dehydro-3-deoxy-D-octonate 8-P", "2-dehydro-3-deoxy-D-octonate 8-phosphate", "Kdo-8P"] "C8H12O11P" 315.15 -3 "C(OP([O-])(=O)[O-])[C@@H](O)[C@H]1(O[C@@](O)(C([O-])=O)C[C@H]([C@H]1O)O)" -"KDO-Containing-Capsular-Polysaccharides" "a capsular polysaccharide with 3-deoxy-D-manno-2-octulosonate" [] null null 0 null +"KDO-Containing-Capsular-Polysaccharides" "a capsular polysaccharide (Escherichia coli K23)" ["→3)-[β-D-ribofuranosyl-(1→7)-3-deoxy-β-D-manno-2-octulosonate]n-(2→"] null null -2 "C(O)[C@@H](O[C@H]1([C@H](O)[C@H](O[R1])[C@@H](CO)O1))[C@H]4(O[C@](O[C@H]3([C@@H](O)[C@H](O[C@H](CO)[C@H]2(O[C@](O[R2])(C([O-])=O)C[C@H]([C@H]2O)O))O[C@H](CO)3))(C([O-])=O)C[C@H]([C@H]4O)O)" "KDO-LIPID-IVA" "α-Kdo-(2→6)-lipid IVA (E. coli)" ["3-Deoxy-D-manno-octulosonyl-lipid IV(A) (E. coli)", "3-deoxy-α-D-manno-oct-2-ulopyranosyl-(2->6)-2-deoxy-2-{[(3R)-3-hydroxypentadecanoyl]amino}-3-O-[(3R)-3-hydroxytetradecanoyl]-4-O-phosphono-β-D-glucopyranosyl-(1->6)-2-deoxy-3-O-[(3R)-3-hydroxytetradecanoyl]-2-{[(3R)-3-hydroxytetradecanoyl]amino}-1-O-phosphono-α-D-glucopyranose", "(KDO)-lipid IVA (E. coli)"] "C76H137N2O30P2" 1620.861 -5 "CCCCCCCCCCC[C@@H](O)CC(=O)N[C@H]1([C@@H](OP([O-])([O-])=O)O[C@@H]([C@@H](O)[C@H](OC(C[C@H](O)CCCCCCCCCCC)=O)1)CO[C@@H]3(O[C@H](CO[C@@]2(C(=O)[O-])(O[C@H]([C@H](O)CO)[C@H](O)[C@H](O)C2))[C@H]([C@@H]([C@H]3NC(C[C@H](O)CCCCCCCCCCC)=O)OC(=O)C[C@H](O)CCCCCCCCCCC)OP([O-])(=O)[O-]))" "KDO2-LAUROYL-LIPID-IVA" "α-Kdo-(2->4)-α-Kdo-(2->6)-(lauroyl)-lipid IVA (E. coli)" ["lauroyl-(Kdo)2-lipid IV (A) (E. coli)", "(Kdo)2-(lauroyl)-lipid IVA (E. coli)"] "C96H170N2O38P2" 2022.337 -6 "CCCCCCCCCCC[C@@H](O)CC(=O)N[C@H]1([C@@H](OP([O-])([O-])=O)O[C@@H]([C@@H](O)[C@H](OC(C[C@H](O)CCCCCCCCCCC)=O)1)CO[C@@H]4(O[C@H](CO[C@@]3(C(=O)[O-])(O[C@H]([C@H](O)CO)[C@H](O)[C@H](O[C@]2(O[C@H]([C@@H](CO)O)[C@H](O)[C@H](O)C2)C(=O)[O-])C3))[C@H]([C@@H]([C@H]4NC(C[C@H](OC(=O)CCCCCCCCCCC)CCCCCCCCCCC)=O)OC(=O)C[C@H](O)CCCCCCCCCCC)OP([O-])([O-])=O))" "KDO2-LIPID-A" "α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A (E. coli)" ["Re endotoxin", "(Kdo)2-lipid A (E. coli)", "Kdo2-lipid A (E. coli)"] "C110H196N2O39P2" 2232.696 -6 "CCCCCCCCCCCCCC(=O)O[C@H](CCCCCCCCCCC)CC(=O)O[C@@H]3([C@H]([C@@H](O[C@H](CO[C@@]2(C(=O)[O-])(O[C@H]([C@H](O)CO)[C@H](O)[C@H](O[C@]1(O[C@H]([C@@H](CO)O)[C@H](O)[C@H](O)C1)C(=O)[O-])C2))[C@H]3OP([O-])(=O)[O-])OC[C@@H]4([C@@H](O)[C@H](OC(C[C@H](O)CCCCCCCCCCC)=O)[C@@H](NC(=O)C[C@H](O)CCCCCCCCCCC)[C@@H](OP([O-])([O-])=O)O4))NC(C[C@H](OC(=O)CCCCCCCCCCC)CCCCCCCCCCC)=O)" @@ -5398,12 +5402,11 @@ "Lipid-A-Disaccharide" "a lipid A disaccharide" ["2-deoxy-2-{[(3R)-3-hydroxyacyl]amino}-3-O-[(3R)-3-hydroxyacyl]-β-D-glucopyranosyl-(1→6)-2-deoxy-3-O-[(3R)-3-hydroxyacyl]-2-{[(3R)-3-hydroxyacyl]amino}-1-O-phospho-α-D-glucopyranose", "tetraacyldisaccharide-1-phosphate (ambiguous)", "a dephospho lipid IVA"] null null -2 "C(O)[C@H]2(O[C@@H](OC[C@@H]1([C@@H](O)[C@H](OC(C[C@H](O)C[R3])=O)[C@@H](NC(=O)C[C@H](O)C[R4])[C@@H](OP([O-])([O-])=O)O1))[C@H](NC(C[C@H](O)C[R2])=O)[C@@H](OC(=O)C[C@H](O)C[R1])[C@@H]2O)" "Lipid-dihydrosterculate" "a [phospholipid]-cis-9,10-methyleneoctadecanoate" ["a [phospholipid]-dihydrosterculic acid", "a [phospholipid]-dihydrosterculate"] null null 0 "CCCCCCCC[C@H]1(C[C@H]1CCCCCCCC([a phospholipid])=O)" "Lipid-hydroxy-fatty-acids" "a hydroxy-fatty-acyl-[lipid]" [] null null 0 "O[a glycerolipid]" -"Lipid-I" "a lipid I" ["an α-MurNAc-[pentapeptide]-diphospho-undecaprenol", "an undecaprenyldiphospho-N-acetylmuramoyl peptide", "an undecaprenyldiphospho-3-O-peptidyl-α-N-acetylmuramate"] null null -3 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(OP(O[C@H]1(O[C@H](CO)[C@@H](O)[C@H](O[C@@H](C(=O)N[C@@H](C)C(N[C@H](CCC(=O)N[C@@H](CCCC([R])[NH3+])C(N[C@H](C)C(=O)N[C@H](C)C(=O)[O-])=O)C(=O)[O-])=O)C)[C@@H](NC(=O)C)1))([O-])=O)(=O)[O-]" +"Lipid-I" "a lipid I" ["an α-MurNAc-[pentapeptide]-diphospho-undecaprenol", "an undecaprenyldiphospho-N-acetylmuramoyl peptide", "an undecaprenyldiphospho-3-O-peptidyl-α-N-acetylmuramate"] null null -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(OP(O[C@H]1(O[C@H](CO)[C@@H](O)[C@H](O[C@@H](C(=O)N[a peptide])C)[C@@H](NC(=O)C)1))([O-])=O)(=O)[O-]" "LIPID-IV-A" "lipid IVA (E. coli)" ["2-deoxy-2-{[(3R)-3-hydroxypentadecanoyl]amino}-3-O-[(3R)-3-hydroxytetradecanoyl]-4-O-phosphono-β-D-glucopyranosyl-(1->6)-2-deoxy-3-O-[(3R)-3-hydroxytetradecanoyl]-2-{[(3R)-3-hydroxytetradecanoyl]amino}-1-O-phosphono-α-D-glucopyranose"] "C68H126N2O23P2" 1401.69 -4 "CCCCCCCCCCC[C@@H](O)CC(=O)N[C@H]1([C@@H](OP([O-])([O-])=O)O[C@@H]([C@@H](O)[C@H](OC(=O)C[C@H](O)CCCCCCCCCCC)1)CO[C@@H]2(O[C@H](CO)[C@H]([C@@H]([C@H]2NC(C[C@H](O)CCCCCCCCCCC)=O)OC(=O)C[C@H](O)CCCCCCCCCCC)OP([O-])([O-])=O))" "Lipid-IVA" "a lipid IVA" ["2-deoxy-2-{[(3R)-3-hydroxyacyl]amino}-3-O-[(3R)-3-hydroxyacyl]-4-O-phospho-β-D-glucopyranosyl-(1→6)-2-deoxy-3-O-[(3R)-3-hydroxyacyl]-2-{[(3R)-3-hydroxyacyl]amino}-1-O-phospho-α-D-glucopyranose"] null null -4 "C(O)[C@H]2(O[C@@H](OC[C@@H]1([C@@H](O)[C@H](OC(=O)C[C@H](O)C[R3])[C@@H](NC(=O)C[C@H](O)C[R4])[C@@H](OP([O-])([O-])=O)O1))[C@H](NC(C[C@H](O)C[R2])=O)[C@@H](OC(=O)C[C@H](O)C[R1])[C@@H]2OP([O-])([O-])=O)" "Lipid-linked-13-mannosyl-mannose-oligos" "a lipid-linked α(1->3)-D-mannosyl-D-mannose-oligosaccharide" [] null null 0 null "Lipid-linked-16-mannosyl-mannose-oligos" "a lipid-linked α(1->6)-D-mannosyl-D-mannose-oligosaccharide" [] null null 0 null -"Lipid-linked-mannosyl-oligos" "a lipid-linked D-mannose-oligosaccharide" [] null null 0 null "Lipid-Linked-O-Antigen-Repeat-Units" "a lipid-linked O-antigen repeat unit" [] null null 0 null "Lipid-sterculate" "a [phospholipid]-sterculate" ["a [phospholipid]-2-octyl-1-cyclopropene-1-octanoate", "a [phospholipid]-sterculic acid"] null null 0 "CCCCCCCCC1(CC(CCCCCCCC([a phospholipid])=O)=1)" "Lipid-X" "a lipid X" ["2-N-[(3R)-3-hydroxyacyl]-3-O-[(3R)-3-hydroxyacyl]-α-D-glucosamine 1-phosphate"] null null -2 "C([C@H](CC(N[C@@H]1([C@H]([C@@H]([C@H](O[C@@H]1OP([O-])(=O)[O-])CO)O)OC(C[C@@H](C[R1])O)=O))=O)O)[R2]" @@ -5553,8 +5556,8 @@ "Mature-Peptidoglycan" "a mature peptidoglycan" [] null null 0 null "MC-alcohol-LC-acyl-ester" "a medium-chain alcohol--long-chain acyl wax ester" [] null null 0 "C(CCCCCCCCCCCC(=O)OCCCCCC[R])[R2]" "MC-alcohol-VLC-acyl-ester" "a medium-chain alcohol--very-long-chain acyl wax ester" [] null null 0 "C(CCCCCCCCCCCCCCCCCCCCCCC(=O)OCCCCCC[R])[R]" -"mcm5s2U-34-tRNA" "a 5-(2-methoxy-2-oxoethyl)2-thiouridine34 in tRNA" ["a tRNA containing 5-(2-methoxy-2-oxoethyl)2-thiouridine34", "an mcm5s2U34 in tRNA", "a 5-methoxycarbonylmethyl-2-thiouridine34 in tRNA"] null null -2 "COC(=O)CC1(\C(=O)NC(=S)N(\C=1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"mcmo5U34m-tRNA" "a 5-(methoxycarbonylmethoxy)-2'-O-methyluridine34 in tRNA" ["a mcmo5U34m in tRNA"] null null -2 "COC(=O)COc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](OC)2))" +"mcm5s2U-34-tRNA" "a 5-(2-methoxy-2-oxoethyl)2-thiouridine34 in tRNA" ["a tRNA containing 5-(2-methoxy-2-oxoethyl)2-thiouridine34", "an mcm5s2U34 in tRNA", "a 5-methoxycarbonylmethyl-2-thiouridine34 in tRNA"] null null -2 "COC(=O)CC1(\C(=O)NC(=S)N(\C=1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"mcmo5U34m-tRNA" "a 5-(methoxycarbonylmethoxy)-2'-O-methyluridine34 in tRNA" ["a mcmo5U34m in tRNA"] null null -2 "COC(=O)COc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](OC)2))" "MDO-D-Glucoses" "an osmoregulated periplasmic glucan" ["an MDO-β-D-glucan", "an OPG-β-D-glucan"] null null 0 "C([C@@H]1([C@H]([C@@H]([C@H]([C@@H](O1)O[R])O)O)O))O[C@H]2([C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O[C@H]3([C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O))" "Medicagenate-Monoglucosides" "a medicagenate monoglucoside" [] null null 0 null "Medicarpin" "medicarpin" ["9-methoxy-6a,11a-dihydro-6H-[1]benzofuro[3,2-c]chromen-3-ol"] "C16H14O4" 270.284 0 "COc1(ccc2(c(c1)OC3(c4(ccc(O)cc(OCC23)4))))" @@ -5579,7 +5582,6 @@ "MELIBIOSE" "melibiose" ["6-O-(α-D-galactopyranosyl)-D-glucopyranose", "D-Gal-α(1->6)-D-glucose", "D-melibiose", "6-O-α-D-galactopyranosyl-D-glucose", "6-(α-D-galactosido)-D-glucose", "α-D-Galp-(1->6)-D-Glc"] "C12H22O11" 342.299 0 "C([C@H]1(O[C@@H]([C@@H]([C@H]([C@H]1O)O)O)OC[C@H]2(OC([C@@H]([C@H]([C@@H]2O)O)O)O)))O" "MELILOTATE" "melilotate" ["3-(2-Hydroxyphenyl) propionate", "3-(2-Hydroxyphenyl)propionic acid", "3-(o-Hydroxyphenyl) propionic acid", "3-(2-hydroxyphenyl)propanoate"] "C9H9O3" 165.168 -1 "C(CCc1(c(cccc1)O))([O-])=O" "Melleolides" "a melleolide" [] null null 0 null -"Membrane-Electron-Carriers" "a membrane-bound electron carrier" [] null null 0 null "MENADIOL" "menadiol" ["2-methylnaphthalene-1,4-diol", "2-methyl-1,4-naphthohydroquinone", "2-methylhydronaphthoquinone"] "C11H10O2" 174.199 0 "Cc1(cc(O)c2(ccccc(c(O)1)2))" "Menaquinols" "a menaquinol" [] null null 0 "CC(/C[R])=C\Cc2(c(C)c(O)c1(ccccc1c(O)2))" "Menaquinones" "a menaquinone" ["a vitamin K2"] null null 0 "CC(/C[R])=C\Cc1(c(c2(c(c(c1C)=O)cccc2))=O)" @@ -5611,7 +5613,7 @@ "Methyl-esters" "a methyl ester" [] null null 0 "COC(=O)[R]" "Methyl-Farnesoates" "a methyl farnesoate" ["a farnesoic acid methyl ester", "a 2,6,10-Dodecatrienoic acid, 3,7,11-trimethyl-, methyl ester", "a farnesenic acid, methyl ester", "a farnesyl methyl ester", "a methyl 3,7,11-trimethyl-2,6,10-dodecatrienoate", "a methyl farnesate", "a methyl farnesylate"] "C16H26O2" 250.38 0 "CC(C)=CCCC(\C)=C/CCC(\C)=C/C(=O)OC" "METHYL-GLYOXAL" "methylglyoxal" ["2-oxopropanal", "acetylformaldehyde", "pyruvic aldehyde", "pyruvaldehyde"] "C3H4O2" 72.063 0 "CC(C=O)=O" -"METHYL-GROUP" "a methyl group" [] "CH4" 16.043 0 "C" +"METHYL-GROUP" "a methyl group" [] null null 0 "C[R]" "Methyl-Inositols" "a methylated inositol" [] null null 0 null "Methyl-Jasmonates" "a methyl jasmonate" ["a jasmonic acid methyl ester", "a jasmonate methyl ester", "an MeJA"] "C13H20O3" 224.299 0 "CC\C=C/CC1(C(=O)CCC1CC(OC)=O)" "METHYL-MALONYL-COA" "(R)-methylmalonyl-CoA" ["L-methylmalonyl-CoA", "methylmalonyl-CoA", "methyl-malonyl-coenzyme A", "CH3-malonyl-CoA"] "C25H35N7O19P3S" 862.568 -5 "C[C@@H](C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(=O)(OP(=O)(OC[C@@H]1([C@@H](OP([O-])(=O)[O-])[C@@H](O)[C@@H](O1)n3(c2(c(c(N)ncn2)nc3))))[O-])[O-])C([O-])=O" @@ -5640,9 +5642,9 @@ "MIPC" "a mannosylinositol phospho-(2'R)-2'-hydroxyphytoceramide" ["MIPC", "a mannosylinositol-P-α-hydroxyphytoceramide", "a mannosylinositol phospho-α-hydroxyphytoceramide"] null null -1 "CCCCCCCCCCCCCC[C@@H](O)[C@@H](O)[C@@H](NC([C@@H](O)[R])=O)COP(O[C@@H]2([C@H](O)[C@H](O)[C@@H](O)[C@H](O)[C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@H](O)1))2))(=O)[O-]" "Mitogen-Activated-Protein-Kinase-L-Thr" "a [mitogen-activated protein kinase]-L-threonine" [] null null 0 "C[C@@H](O)[C@H](N[a mitogen-activated protein kinase])C(=O)[a mitogen-activated protein kinase]" "MN+2" "Mn2+" ["Mn(II) (incorrect)", "Mn++", "manganese(II)", "MnII"] "Mn" 54.938 2 "[Mn+2]" -"mnm5GeS2U" "a 5-methylaminomethyl-2-(S-geranyl)thiouridine34 in tRNA" ["mnm5geS2U"] null null -1 "CC(C)=CCCC(\C)=C/CSc1(n(cc(C[NH2+]C)c(=O)n1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"Mnm5Se2U-containing-tRNAs" "a 5-methylaminomethyl-2-selenouridine34 in tRNA" ["tRNA containing 5-methylaminomethyl-2-selenouridine34"] null null -1 "C[NH2+]CC1(\C(=O)NC(=[Se])N(\C=1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"mnm5SeP2U" "a 5-methylaminomethyl-2-(Se-phospho)selenouridine34 in tRNA" ["tRNA containing 5-methylaminomethyl-2-selenophosphouridine"] null null -3 "C[NH2+]Cc1(c(=O)nc([Se]P([O-])([O-])=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" +"mnm5GeS2U" "a 5-methylaminomethyl-2-(S-geranyl)thiouridine34 in tRNA" ["mnm5geS2U"] null null -1 "CC(C)=CCCC(\C)=C/CSc1(n(cc(C[NH2+]C)c(=O)n1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"Mnm5Se2U-containing-tRNAs" "a 5-methylaminomethyl-2-selenouridine34 in tRNA" ["tRNA containing 5-methylaminomethyl-2-selenouridine34"] null null -1 "C[NH2+]CC1(\C(=O)NC(=[Se])N(\C=1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"mnm5SeP2U" "a 5-methylaminomethyl-2-(Se-phospho)selenouridine34 in tRNA" ["tRNA containing 5-methylaminomethyl-2-selenophosphouridine"] null null -3 "C[NH2+]Cc1(c(=O)nc([Se]P([O-])([O-])=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" "MnmA-Cysteine" "a [tRNA-uridine 2-sulfurtransferase]-L-cysteine" [] null null 0 "C(=O)([a tRNA-uridine 2-sulfurtransferase])[C@@H](N[a tRNA-uridine 2-sulfurtransferase])CS" "MnmA-Sulfanyl-Cysteine" "a [tRNA-uridine 2-sulfurtransferase]-S-sulfanyl-L-cysteine" ["an MnmA persulfide"] null null 0 "C([a tRNA-uridine 2-sulfurtransferase])([C@@H](N[a tRNA-uridine 2-sulfurtransferase])CSS)=O" "MO+2" "Mo2+" ["molybdenum(II)", "Mo++", "MoII"] "Mo" 95.94 2 "[Mo+2]" @@ -5684,7 +5686,6 @@ "Modified-Uridine-in-RNAs" "a modified uridine in RNA" [] null null 0 null "Modified-Uridines" "a modified uridine" [] null null 0 null "MOENOMYCIN" "moenomycin" [] "C69H104N4O35P" 1580.56 -3 "CC(C)=CCCC(\C)=C/CC(CCC(C)(C)/C=C/CCC(\C)=C/CO[C@@H](C([O-])=O)COP(=O)([O-])O[C@H]6(O[C@@H]([C@](O)(C)[C@H](OC(=O)N)[C@@H](O[C@@H]5(O[C@H](CO[C@H]1([C@H](O)[C@H]([C@H](O)[C@@H](CO)O1)O))[C@@H](O[C@@H]4(O[C@@H]([C@@H](O[C@H]3([C@H](O)[C@H]([C@@H](O)[C@@H](C(=O)NC2(/C(=O)CCC(\O)=2))O3)O))[C@H](O)[C@@H](NC(=O)C)4)C))[C@H](O)[C@@H](NC(=O)C)5))6)C(=O)[O-]))=C" -"Molecular-Messengers" "a molecular messenger" [] null null 0 null "MONO-BETA-D-GALACTOSYLACYLGLYCEROL" "a mono-β-D-galactosylacylglycerol" [] null null 0 "C(OC(=O)[R])[C@H](CO[C@@H]1(O[C@H](CO)[C@H](O)[C@H](O)[C@@H](O)1))O" "Mono-Rhamnolipids" "a mono-rhamnolipid" [] null null -1 "C([R1])[C@H](CC(=O)[O-])OC(=O)C[C@@H](C[R2])O[C@H]1([C@H](O)[C@H](O)[C@@H](O)[C@H](C)O1)" "Mono-trans-poly-cis-polyprenyl-PP" "a mono-trans, poly-cis-polyisoprenyl diphosphate" [] null null 0 null @@ -5723,7 +5724,7 @@ "Monoterpenol-phosphates" "a monoterpenyl phosphate" [] null null -2 "O(P(=O)([O-])[O-])[a monoterpenol]" "Monoterpenols" "a monoterpenol" ["an oxygenated monoterpene"] null null 0 null "Monoterpenyl-Diphosphates" "a monoterpenyl diphosphate" [] null null -3 "O(P(=O)([O-])OP(=O)([O-])[O-])[a monoterpenol]" -"MONOTRANS-CIS-DECAPRENYL-GROUP" "mono-trans, poly-cis-decaprenyl group" [] "C50H82" 683.198 0 "C\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC/C=C(C)/CCC=C(C)C" +"MONOTRANS-CIS-DECAPRENYL-GROUP" "mono-trans,octa-cis-decaprenyl group" [] "C50H82" 683.198 0 "C\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC\C=C(C)/CC/C=C(C)/CCC=C(C)C" "Monounsaturated-fatty-acids" "a monounsaturated fatty acid" ["MUFA"] null null -1 "C(=O)([R])[O-]" "Monovalent-Inorganic-Cations" "a monovalent inorganic cation" [] null null 0 null "MPHPV" "α-(2-methoxyphenoxy)-β-hydroxypropiovanillone" ["MPHPV"] "C17H18O6" 318.326 0 "COc1(ccccc1OC(CO)C(=O)c2(cc(OC)c(O)cc2))" @@ -5767,11 +5768,12 @@ "Myo-inositol-trisphosphates" "a myo-inositol trisphosphate" [] null null 0 null "Myristoylated-Glycine-in-Proteins" "an N-terminal N-myristoyl-glycyl-[protein]" ["a [protein] N-terminal N-myristoyl-glycine", "an N-terminal N-tetradecanoyl-glycine-[protein]"] null null 0 "CCCCCCCCCCCCCC(NCC(=O)[a protein])=O" "N-1-deoxy-beta-D-fructopyranosylamine" "an N-(1-deoxy-β-D-fructopyranos-1-yl)amine" ["a fructosamine"] null null 1 "C([R])[NH2+]C[C@@]1(O)(OC[C@@H](O)[C@@H](O)[C@H](O)1)" +"N-1-deoxy-beta-D-fructopyranosylamine-phosphate" "an N-(1-deoxy-D-fructos-1-yl)amine phosphate" ["a fructosamine phosphate"] null null -1 "C([R])[NH2+]CC(=O)[C@@H](O)[C@H](O)[C@H](O)COP(=O)([O-])[O-]" "N-23-DIHYDROXYBENZOYL-L-SERINE" "N-(2,3-dihydroxybenzoyl)-L-serine" ["2-(2,3-dihydroxybenzoyl)amino-3-hydroxy-propanoic acid", "2,3-dihydroxybenzoylserine"] "C10H10NO6" 240.192 -1 "c1(cc(O)c(O)c(c1)C(=O)N[C@@H](CO)C([O-])=O)" "N-4-aminobutylidene-eIF5A-lysine" "an [eIF5A-precursor]-N-(4-aminobutylidene)-lysine" ["an N-(4-aminobutylidene)-[eIF5A-precursor]-lysine"] null null 1 "C([NH3+])CC\C=N/CCCC[C@H](N[an eIF5A protein])C([an eIF5A protein])=O" "N-4-aminobutylidene-enzyme-lysine" "a [deoxyhypusine synthase]-N-(4-aminobutylidene)-lysine" ["an N-(4-aminobutylidene)-[enzyme]-lysine"] null null 1 "C([NH3+])CC\C=N/CCCC[C@H](N[a deoxyhypusine synthase])C([a deoxyhypusine synthase])=O" "N-5-PHOSPHORIBOSYL-ANTHRANILATE" "N-(5-phosphoribosyl)-anthranilate" ["N-(5-phospho-D-ribosyl)-anthranilate", "N-(5-phospho-β-D-ribosyl)-anthranilate", "5-phosphoribosyl-anthranilate", "5-P-ribosyl-anthranilate", "5'-phosphoribosyl-anthranilate", "5'-P-ribosyl-anthranilate"] "C12H13NO9P" 346.21 -3 "C(OP(=O)([O-])[O-])[C@H]2(O[C@@H](Nc1(ccccc(C(=O)[O-])1))[C@H](O)[C@H](O)2)" -"N-6-ISOPENTYL-ADENOSINE-37-TRNA" "N-6-isopentenyl adenosine37 in tRNA" ["a tRNA containing N-6-isopentenyl adenosine37"] null null -2 "CC(C)=CCNc1(ncnc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))" +"N-6-ISOPENTYL-ADENOSINE-37-TRNA" "N-6-isopentenyl adenosine37 in tRNA" ["a tRNA containing N-6-isopentenyl adenosine37"] null null -2 "CC(C)=CCNc1(ncnc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))" "N-Ac-L-Met-L-Lys-Membrane-Protein" "an N-terminal Nα-acetyl-L-methionyl-[transmembrane protein]" ["a [transmembrane protein]-N-terminal-Nα-acetyl-L-methionine"] null null 0 "CC(=O)N[C@@H](CCSC)C(=O)[a transmembrane protein]" "N-Ac-L-methionyl-L-alanyl-Protein" "an N-terminal-Nα-acetyl-L-methionyl-L-alanyl-[protein]" [] null null 0 "C[C@H](NC(=O)[C@@H](NC(=O)C)CCSC)C(=O)[a protein]" "N-Ac-L-methionyl-L-asparaginyl-Protein" "an N-terminal-Nα-acetyl-L-methionyl-L-asparaginyl-[protein]" ["an Nα-acetyl-L-methionyl-L-asparaginyl-[protein]"] null null 0 "CC(=O)N[C@@H](CCSC)C(=O)N[C@H](C(=O)[a protein])CC(N)=O" @@ -5896,28 +5898,28 @@ "N-tetrasaccharide-protein-H-volcanii" "an [H. volcanii protein]-L-asparagine-[tetrasaccharide]" ["methyl-O-4-β-D-GlcA-(1→4)-α-D-GalA-(1→4)-β-D-GlcA-(1→4)-β-D-Glc-Asn-[protein]"] null null -3 "CO[C@H]4([C@H](O)[C@@H](O)[C@H](O[C@@H]3([C@H](O)[C@@H](O)[C@@H](O[C@H]2([C@H](O)[C@@H](O)[C@H](O[C@H]1([C@@H]([C@H]([C@H](NC(=O)C[C@H](N[a protein])C([a protein])=O)O[C@@H]1CO)O)O))O[C@H](C(=O)[O-])2))O[C@H](C(=O)[O-])3))O[C@H](C(=O)[O-])4)" "N1-ACETYLSPERMINE" "N1-acetylspermine" [] "C12H31N4O" 247.403 3 "CC(=O)NCCC[NH2+]CCCC[NH2+]CCC[NH3+]" "N1-ETHYLADENINE-IN-DNA" "an N1-ethyladenine in DNA" [] null null -2 "CCN2(C(c1(ncn(c1\N=C/2)[C@@H]3(O[C@H](COP(=O)([O-])O[a deoxyribonucleic acid])[C@@H](OP(=O)(O[a deoxyribonucleic acid])[O-])C3)))=N)" -"N1-MeAdenine57-MeAdenine58-tRNAs" "N1-methyladenine57/N1-methyladenine58 in tRNA" [] null null -3 "C(OP(O[a tRNA])(=O)[O-])[C@H]6(O[C@@H](n1(cnc2(c1\N=C/N(C)C2=N)))[C@H](O)[C@H](OP(OC[C@H]5(O[C@@H](n3(cnc4(c3\N=C/N(C)C4=N)))[C@H](O)[C@H](OP(O[a tRNA])([O-])=O)5))([O-])=O)6)" +"N1-MeAdenine57-MeAdenine58-tRNAs" "N1-methyladenine57/N1-methyladenine58 in tRNA" [] null null -3 "C(OP(O[a transfer RNA])(=O)[O-])[C@H]6(O[C@@H](n1(cnc2(c1\N=C/N(C)C2=N)))[C@H](O)[C@H](OP(OC[C@H]5(O[C@@H](n3(cnc4(c3\N=C/N(C)C4=N)))[C@H](O)[C@H](OP(O[a transfer RNA])([O-])=O)5))([O-])=O)6)" "N1-METHYLADENINE" "N1-methyladenine" ["m1A"] "C6H7N5" 149.155 0 "Cn2(cnc1(c(ncn1)c(N)2))" -"N1-Methyladenine-containing-rRNAs" "an N1-methyladenine in rRNA" ["rRNA containing N1-methyladenine"] null null -2 "CN2(C(c1(ncn(c1\N=C/2)[C@@H]3(O[C@H](COP(=O)([O-])O[rRNA])[C@@H](OP(=O)(O[rRNA])[O-])[C@@H](O)3)))=N)" +"N1-Methyladenine-containing-rRNAs" "an N1-methyladenine in rRNA" ["rRNA containing N1-methyladenine"] null null -2 "CN2(C(c1(ncn(c1\N=C/2)[C@@H]3(O[C@H](COP(=O)([O-])O[a ribosomal RNA])[C@@H](OP(=O)(O[a ribosomal RNA])[O-])[C@@H](O)3)))=N)" "N1-METHYLADENINE-RNA" "an N1-methyladenine in RNA" ["1-methyladenine in RNA"] null null -2 "CN2(C(c1(ncn(c1\N=C/2)[C@@H]3(O[C@H](COP(=O)([O-])O[a ribonucleic acid])[C@@H](OP(=O)(O[a ribonucleic acid])[O-])[C@@H](O)3)))=N)" "N1-Methylguanine-containing-23S-rRNAs" "an N1-methylguanine in 23S rRNA" [] null null -2 "Cn2(c(=O)c1(ncn(c1nc(N)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a 23S rRNA])[C@@H](OP(=O)(O[a 23S rRNA])[O-])[C@@H](O)3)))" -"N1-Methylguanine-containing-rRNAs" "an N1-methylguanine in rRNA" ["rRNA containing N1-methylguanine"] null null -2 "Cn2(c(=O)c1(ncn(c1nc(N)2)[C@@H]3(O[C@H](COP(=O)([O-])O[rRNA])[C@@H](OP(=O)(O[rRNA])[O-])[C@@H](O)3)))" +"N1-Methylguanine-containing-rRNAs" "an N1-methylguanine in rRNA" ["rRNA containing N1-methylguanine"] null null -2 "Cn2(c(=O)c1(ncn(c1nc(N)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a ribosomal RNA])[C@@H](OP(=O)(O[a ribosomal RNA])[O-])[C@@H](O)3)))" "N1-methylguanine2535-in-23S-rRNA" "an N1-methylguanine2535 in 23S rRNA" [] null null -2 "Cn2(c(=O)c1(ncn(c1nc(N)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a 23S rRNA])[C@@H](OP(=O)(O[a 23S rRNA])[O-])[C@@H](O)3)))" -"N2-8-dimethyladenine-containing-rRNAs" "a 2,8- dimethyladenine in rRNA" ["an rRNA containing 2,8- dimethyladenine"] null null -2 "Cc1(nc2(n(c(C)nc(c(N)n1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[rRNA])[C@@H](OP(=O)(O[rRNA])[O-])[C@@H](O)3)))" +"N2-8-dimethyladenine-containing-rRNAs" "a 2,8- dimethyladenine in rRNA" ["an rRNA containing 2,8- dimethyladenine"] null null -2 "Cc1(nc2(n(c(C)nc(c(N)n1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a ribosomal RNA])[C@@H](OP(=O)(O[a ribosomal RNA])[O-])[C@@H](O)3)))" "N2-furfuryl-guanine-in-DNA" "an N2-furfuryl-guanine in DNA" [] null null -2 "C(Nc1(nc2(n(cnc(c(=O)[nH]1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a deoxyribonucleic acid])[C@@H](OP(=O)(O[a deoxyribonucleic acid])[O-])C3))))c4(ccco4)" -"N2-Methyladenine-containing-rRNAs" "a 2-methyladenine in rRNA" [] null null -2 "Cc1(nc2(n(cnc(c(N)n1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[rRNA])[C@@H](OP(=O)(O[rRNA])[O-])[C@@H](O)3)))" +"N2-Methyladenine-containing-rRNAs" "a 2-methyladenine in rRNA" [] null null -2 "Cc1(nc2(n(cnc(c(N)n1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a ribosomal RNA])[C@@H](OP(=O)(O[a ribosomal RNA])[O-])[C@@H](O)3)))" "N2-Methylguanine-containing-16SrRNAs" "an N2-methylguanine in 16S rRNA" ["a 16S rRNA containing N2-methylguanine"] null null -2 "CNc1(nc2(n(cnc(c(=O)[nH]1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a 16S rRNA])[C@@H](OP(=O)(O[a 16S rRNA])[O-])[C@@H](O)3)))" "N2-MethylGuanines-containing-23SrRNAs" "an N2-methylguanine in 23S rRNA" ["a 23SrRNA containing N2-methylguanine"] null null -2 "CNc1(nc2(n(cnc(c(=O)[nH]1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a 23S rRNA])[C@@H](OP(=O)(O[a 23S rRNA])[O-])[C@@H](O)3)))" "N2-SUCCINYLGLUTAMATE" "N2-succinylglutamate" ["N2-Succinyl-L-glutamate", "N2-succinylglutamatic acid", "N2-succinylglutamic acid"] "C9H10NO7" 244.18 -3 "C(CCC(=O)[O-])(N[C@@H](CCC(=O)[O-])C(=O)[O-])=O" "N2-SUCCINYLORNITHINE" "N2-succinyl-L-ornithine" ["N2-succinylornithine"] "C9H15N2O5" 231.228 -1 "C(CC[C@@H](C([O-])=O)NC(=O)CCC([O-])=O)[NH3+]" "N3-Acetal-deoxystreptamine-antib" "an N3-acetyl-2-deoxystreptamine antibiotic" [] null null 1 "CC(=O)N[C@H]1(C[C@@H]([NH3+])C(O[R])[C@@H](O)C(O[R])1)" -"N3-Methylated-pseudoU-containing-rRNAs" "an N3-methyl pseudouridine in rRNA" ["m3ψ"] null null -2 "Cn1(c(=O)[nH]cc(c(=O)1)[C@@H]2(O[C@H](COP(=O)([O-])O[rRNA])[C@@H](OP(=O)(O[rRNA])[O-])[C@@H](O)2))" +"N3-Methylated-pseudoU-containing-rRNAs" "an N3-methyl pseudouridine in rRNA" ["m3ψ"] null null -2 "Cn1(c(=O)[nH]cc(c(=O)1)[C@@H]2(O[C@H](COP(=O)([O-])O[a ribosomal RNA])[C@@H](OP(=O)(O[a ribosomal RNA])[O-])[C@@H](O)2))" "N3-Methylcytosine-32-tRNA-Sers" "an N3-methylcytosine32 in tRNASer" [] null null -1 "C[n+]1(c(ccn(c1=O)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNAser])[C@@H](OP(=O)(O[a tRNAser])[O-])[C@@H](O)2))N)" "N3-Methylcytosine-32-tRNA-Thr" "an N3-methylcytosine32 in tRNAthr" [] null null -1 "C[n+]1(c(ccn(c1=O)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNAThr])[C@@H](OP(=O)(O[a tRNAThr])[O-])[C@@H](O)2))N)" "N3-METHYLCYTOSINE-RNA" "an N3-methylcytosine in RNA" ["3-methylcytosine in RNA"] null null -1 "C[n+]1(c(ccn(c1=O)[C@@H]2(O[C@H](COP(=O)([O-])O[a ribonucleic acid])[C@@H](OP(=O)(O[a ribonucleic acid])[O-])[C@@H](O)2))N)" -"N3-Methyluracil-containing-rRNAs" "an N3-methyluracil in rRNA" ["an rRNA containing N3-methyluracil"] null null -2 "Cn1(c(=O)ccn(c(=O)1)[C@@H]2(O[C@H](COP(=O)([O-])O[rRNA])[C@@H](OP(=O)(O[rRNA])[O-])[C@@H](O)2))" +"N3-Methyluracil-containing-rRNAs" "an N3-methyluracil in rRNA" ["an rRNA containing N3-methyluracil"] null null -2 "Cn1(c(=O)ccn(c(=O)1)[C@@H]2(O[C@H](COP(=O)([O-])O[a ribosomal RNA])[C@@H](OP(=O)(O[a ribosomal RNA])[O-])[C@@H](O)2))" "N3-O-disulfo-D-glucosamine" "N,3-O-disulfo-D-glucosamine" [] "C6H11NO11S2" 337.273 -2 "C([C@H]1(OC([C@@H]([C@H]([C@@H]1O)OS(=O)(=O)[O-])NS([O-])(=O)=O)O))O" -"N4-Methylcytosine-Containing-rRNAs" "an N4-methylcytosine in rRNA" ["an N4-methylcytosine-containing rRNA"] null null -2 "CNc1(nc(n(cc1)[C@@H]2(O[C@H](COP(=O)([O-])O[rRNA])[C@@H](OP(=O)(O[rRNA])[O-])[C@@H](O)2))=O)" +"N4-Methylcytosine-Containing-rRNAs" "an N4-methylcytosine in rRNA" ["an N4-methylcytosine-containing rRNA"] null null -2 "CNc1(nc(n(cc1)[C@@H]2(O[C@H](COP(=O)([O-])O[a ribosomal RNA])[C@@H](OP(=O)(O[a ribosomal RNA])[O-])[C@@H](O)2))=O)" "N4-N-ACETYL-BETA-D-GLUCOSAMINYL-F" "a β-D-GlcNAc-(1→2)-α-D-Man-(1→3)-[β-D-GlcNAc-(1→2)-α-D-Man-(1→6)]-[β-D-Xyl-(1→2)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-[α-L-Fuc-(1→3)]-β-D-GlcNAc}-N-Asn-[protein]" [] null null 0 "C[C@@H]8(O[C@@H](O[C@H]1([C@@H]([C@@H](CO)O[C@@H](NC(=O)CC(N[a protein])C([a protein])=O)[C@H](NC(=O)C)1)O[C@H]7([C@H](NC(=O)C)[C@H]([C@H](O[C@H]2([C@@H](O)[C@H]([C@H](O)[C@H](O2)CO[C@@H]4([C@@H](O[C@@H]3([C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)NC(C)=O))[C@H]([C@H](O)[C@H](O4)CO)O))O[C@@H]6([C@@H](O[C@H]5([C@H](NC(=O)C)[C@H]([C@H](O)[C@@H](CO)O5)O))[C@@H](O)[C@@H]([C@H](O6)CO)O)))[C@@H](CO)O7)O)))[C@H]([C@@H]([C@@H]8O)O)O)" "N4-N-ACETYL-BETA-D-GLUCOSAMINYL-F6" "an N4-{β-D-GlcNAc-(1→2)-α-D-Man-(1→3)-[β-D-GlcNAc-(1→2)-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-[α-L-Fuc-(1→6)]-β-D-GlcNAc}-N-Asn-[protein]" ["an N4-{N-acetyl-β-D-glucosaminyl-(1,2)-α-D-mannosyl-(1,3)-[N-acetyl-β-D-glucosaminyl-(1,2)-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1,4)-N-acetyl-β-D-glucosaminyl-(1,4)-[α-L-fucosyl-(1,6)]-N-acetyl-β-D-glucosaminyl}-N-Asn-[protein]", "Man3FucGlcNAc4-[protein]"] null null 0 "C[C@@H]8(O[C@@H](OC[C@@H]7([C@@H](O[C@H]6([C@H](NC(=O)C)[C@H]([C@H](O[C@H]1([C@@H](O)[C@H]([C@H](O)[C@H](O1)CO[C@@H]3([C@@H](O[C@@H]2([C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)NC(C)=O))[C@H]([C@H](O)[C@H](O3)CO)O))O[C@@H]5([C@@H](O[C@H]4([C@H](NC(=O)C)[C@H]([C@H](O)[C@@H](CO)O4)O))[C@@H](O)[C@@H]([C@H](O5)CO)O)))[C@@H](CO)O6)O))[C@H](O)[C@@H](NC(=O)C)[C@H](NC(=O)C[C@H](N[a protein])C([a protein])=O)O7))[C@H]([C@@H]([C@@H]8O)O)O)" "N4-N-ACETYL-BETA-D-GLUCOSAMINYL-X" "a β-D-GlcNAc-(1→2)-α-D-Man-(1→3)-[β-D-GlcNAc-(1→2)-α-D-Man-(1→6)]-[β-D-Xyl-(1→2)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-β-D-GlcNAc}-N-Asn-[protein]" ["GnGnX-glycopeptide", "GnGnX-GP", "an N4-{N-acetyl-β-D-glucosaminyl-(1,2)-α-D-mannosyl-(1,3)-[N-acetyl-β-D-glucosaminyl-(1,2)-α-D-mannosyl-(1,6)]-[β-D-xylosyl-(1,2)]-β-D-mannosyl-(1,4)-N-acetyl-β-D-glucosaminyl-(1,4)-N-acetyl-β-D-glucosaminyl}-L-asparagine-[protein]"] null null 0 "CC(N[C@H]8([C@H](NC(=O)C[C@H](N[a protein])C([a protein])=O)O[C@H](CO)[C@@H](O[C@H]7([C@H](NC(=O)C)[C@H]([C@H](O[C@H]2([C@@H](O[C@@H]1(OC[C@@H](O)[C@H](O)[C@@H](O)1))[C@H]([C@H](O)[C@H](O2)CO[C@@H]4([C@@H](O[C@@H]3([C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)NC(C)=O))[C@H]([C@H](O)[C@H](O4)CO)O))O[C@@H]6([C@@H](O[C@H]5([C@H](NC(=O)C)[C@H]([C@H](O)[C@@H](CO)O5)O))[C@@H](O)[C@@H]([C@H](O6)CO)O)))[C@@H](CO)O7)O))[C@H](O)8))=O" @@ -5928,29 +5930,29 @@ "N5-METHYLGLUTAMINE" "N5-methyl-L-glutamine" ["γ-L-glutamyl methylamide", "(2S)-2-amino-5-(methylamino)-5-oxopentanoate"] "C6H12N2O3" 160.172 0 "CNC(=O)CC[C@H]([NH3+])C(=O)[O-]" "N6-Alkylaminopurine" "an N6-alkylaminopurine" [] null null 0 "c1(nc2(c(ncnc([nH]1)2)N[R]))" "N6-Alkylaminopurine-glucoside" "an N6-alkylaminopurine-7-β-D-glucoside" [] null null 0 "c1(nc(N[R])c2(c(n1)ncn2[C@@H]3(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](O)3)))" -"N6-dimethyladenine-containing-rRNAs" "an N6-dimethyladenine in rRNA" ["an rRNA containing N6-dimethyladenine"] null null -2 "CN(C)c1(ncnc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[rRNA])[C@@H](OP(=O)(O[rRNA])[O-])[C@@H](O)3)))" -"N6-L-threonylcarbamoyladenine37-tRNAs" "an N6-L-threonylcarbamoyladenine37 in tRNA" [] null null -3 "C[C@@H](O)[C@H](NC(Nc1(ncnc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3))))=O)C([O-])=O" -"N6-met-threonylcarbamoyl-A37-tRNAs" "an N6-methyl-threonylcarbamoyladenosine 37 in tRNA" ["m6t6A37 tRNA"] null null -3 "C[C@@H](O)[C@H](NC(N(C)c1(ncnc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3))))=O)C([O-])=O" +"N6-dimethyladenine-containing-rRNAs" "an N6-dimethyladenine in rRNA" ["an rRNA containing N6-dimethyladenine"] null null -2 "CN(C)c1(ncnc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a ribosomal RNA])[C@@H](OP(=O)(O[a ribosomal RNA])[O-])[C@@H](O)3)))" +"N6-L-threonylcarbamoyladenine37-tRNAs" "an N6-L-threonylcarbamoyladenine37 in tRNA" [] null null -3 "C[C@@H](O)[C@H](NC(Nc1(ncnc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3))))=O)C([O-])=O" +"N6-met-threonylcarbamoyl-A37-tRNAs" "an N6-methyl-threonylcarbamoyladenosine 37 in tRNA" ["m6t6A37 tRNA"] null null -3 "C[C@@H](O)[C@H](NC(N(C)c1(ncnc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3))))=O)C([O-])=O" "N6-Methyladenine-containing-mRNAs" "an N6-methyladenine in mRNA" ["mRNA containing N6-methyladenine", "a 6-methylaminopurine in mRNA"] null null -2 "CNc3(c2(ncn([C@@H]1(O[C@H](COP(=O)([O-])O[an mRNA])[C@@H](OP([O-])(=O)O[an mRNA])[C@@H](O)1))c2ncn3))" -"N6-Methyladenine-containing-rRNAs" "an N6-methyladenine in rRNA" ["rRNA containing N6-methyladenine", "a 6-methylaminopurine in rRNA"] null null -2 "CNc1(ncnc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[rRNA])[C@@H](OP(=O)(O[rRNA])[O-])[C@@H](O)3)))" +"N6-Methyladenine-containing-rRNAs" "an N6-methyladenine in rRNA" ["rRNA containing N6-methyladenine", "a 6-methylaminopurine in rRNA"] null null -2 "CNc1(ncnc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a ribosomal RNA])[C@@H](OP(=O)(O[a ribosomal RNA])[O-])[C@@H](O)3)))" "N6-Methyladenine-U6-snRNA" "an N6-methyladenine in a U6 snRNA" [] null null -2 "CNc1(ncnc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a U6 snRNA])[C@@H](OP(=O)(O[a U6 snRNA])[O-])[C@@H](O)3)))" "N6-O-disulfo-D-glucosamine" "N,6-O-disulfo-D-glucosamine" ["N2-,6-disulfo-D-glucosamine"] "C6H11NO11S2" 337.273 -2 "C([C@H]1(OC([C@@H]([C@H]([C@@H]1O)O)NS(=O)([O-])=O)O))OS(=O)([O-])=O" "N6-Pup-gamma-L-glutamyl-protein-L-lysine" "N6-([prokaryotic ubiquitin-like protein]-γ-L-glutamyl)-[protein]-L-lysine" [] null null -1 "C(NC(=O)CC[C@@H](C(=O)[O-])N[a prokaryotic ubiquitin-like protein])CCC[C@@H](C(=O)[a protein])N[a protein]" -"N6N6-Dimethyladenine-Containing-rRNAs" "an N6,N6-dimethyladenine in rRNA" [] null null -2 "CN(C)c1(ncnc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[rRNA])[C@@H](OP(=O)(O[rRNA])[O-])[C@@H](O)3)))" +"N6N6-Dimethyladenine-Containing-rRNAs" "an N6,N6-dimethyladenine in rRNA" [] null null -2 "CN(C)c1(ncnc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a ribosomal RNA])[C@@H](OP(=O)(O[a ribosomal RNA])[O-])[C@@H](O)3)))" "N7-Methylguanine-containing-16SrRNAs" "an N7-methylguanine in 16S rRNA" ["a 16S rRNA containing N7-methylguanine"] null null -1 "C[n+]1(c3(c(=O)[nH]c(N)nc(n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a 16S rRNA])[C@@H](OP(=O)(O[a 16S rRNA])[O-])[C@@H](O)2))3))" -"N7-Methylguanine-containing-rRNAs" "an N7-methylguanine in rRNA" ["an rRNA containing N7-methylguanine"] null null -1 "C[n+]1(c3(c(=O)[nH]c(N)nc(n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[rRNA])[C@@H](OP(=O)(O[rRNA])[O-])[C@@H](O)2))3))" +"N7-Methylguanine-containing-rRNAs" "an N7-methylguanine in rRNA" ["an rRNA containing N7-methylguanine"] null null -1 "C[n+]1(c3(c(=O)[nH]c(N)nc(n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a ribosomal RNA])[C@@H](OP(=O)(O[a ribosomal RNA])[O-])[C@@H](O)2))3))" "N7-METHYLGUANINE-IN-DNA" "an N7-methylguanine in DNA" ["N7-deoxymethylguanosine-DNA", "d7mG-DNA"] null null -3 "C[n+]1(c5(c(=O)[nH]c(N)nc(n(c1)[C@@H]4(O[C@H](COP(O[C@H]2(C[C@H]([a nucleobase])O[C@H](COP(=O)([O-])O[a deoxyribonucleic acid])2))(=O)[O-])[C@@H](OP(OC[C@H]3(O[C@@H]([a nucleobase])C[C@H](OP(O[a deoxyribonucleic acid])(=O)[O-])3))(=O)[O-])C4))5))" "N7-methylGuanine1575-in-18StRNAs" "an N7-methylguanine1575 in 18S rRNA" [] null null -1 "C[n+]1(c3(c(=O)[nH]c(N)nc(n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[an 18S rRNA])[C@@H](OP(=O)(O[an 18S rRNA])[O-])[C@@H](O)2))3))" -"N7-Methylguanosine-containing-rRNAs" "a 7-methylguanosine in rRNA" [] null null -1 "C[n+]1(c3(c(=O)[nH]c(N)nc(n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[rRNA])[C@@H](OP(=O)(O[rRNA])[O-])[C@@H](O)2))3))" -"N8-Methyladenine-containing-rRNAs" "an 8-methyladenine in rRNA" [] null null -2 "Cc1(n(c2(c(n1)c(N)ncn2))[C@@H]3(O[C@H](COP(=O)([O-])O[rRNA])[C@@H](OP(=O)(O[rRNA])[O-])[C@@H](O)3))" +"N7-Methylguanosine-containing-rRNAs" "a 7-methylguanosine in rRNA" [] null null -1 "C[n+]1(c3(c(=O)[nH]c(N)nc(n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a ribosomal RNA])[C@@H](OP(=O)(O[a ribosomal RNA])[O-])[C@@H](O)2))3))" +"N8-Methyladenine-containing-rRNAs" "an 8-methyladenine in rRNA" [] null null -2 "Cc1(n(c2(c(n1)c(N)ncn2))[C@@H]3(O[C@H](COP(=O)([O-])O[a ribosomal RNA])[C@@H](OP(=O)(O[a ribosomal RNA])[O-])[C@@H](O)3))" "NA+" "Na+" ["sodium(I)", "NaI"] "Na" 22.99 1 "[Na+]" "NA2SO4" "sodium sulfate" [] "Na2(SO4)" 142.038 0 null "NAc-glucosaminyl-b-D-mannosyl-R" "N-acetyl-β-D-glucosaminyl-(1→4)-β-D-mannosyl-[protein]" ["4-(N-acetyl-β-D-glucosaminyl)-β-D-mannosyl-R", "4-(N-acetyl-β-D-glucosaminyl)-β-D-mannosyl-[glycoprotein]"] null null 0 "CC(N[C@H]2([C@@H](O[C@H]1([C@H](O)[C@H](O)[C@H](OC([R])[C@@H](C(=O)[a protein])N[a protein])O[C@H](CO)1))O[C@@H]([C@H]([C@@H]2O)O)CO))=O" "NACL" "sodium chloride" [] "NaCl" 58.443 0 null "NACMUR" "N-acetyl-D-muramate" ["2-acetamido-3-O-(D-1-carboxyethyl)-2-deoxy-beta-D-glucose", "MurNAc", "N-acetylmuramic acid", "NAcMur", "2-[3-acetylamino-2,5-dihydroxy-6-(hydroxymethyl)tetrahydropyran-4-yl]oxypropanoic acid", "N-acetyl-D-muramic acid"] "C11H18NO8" 292.265 -1 "C[C@@H](O[C@@H]1([C@@H](NC(=O)C)C(O[C@H](CO)[C@H]1O)O))C(=O)[O-]" -"NAcMur-4Peptide-NAcGlc-Undecaprenols" "an Und-PP-[β-D-GlcNAc-(1→4)]-N-acetylmuramyl-(tetrapeptide)" ["a GlcNAc-(1->4)-MurNAc-tetrapeptide-diphosphoundecaprenol", "a β-D-GlcNAc-(1→4)-N-acetylmuramoyl-(tetrapeptide)-PP-Und"] null null -3 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(OP(O[C@H]2(O[C@H](CO)[C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](NC(=O)C)1))[C@H](O[C@@H](C(=O)N[C@@H](C)C(N[C@H](CCC(=O)N[C@@H](CCCC([R])[NH3+])C(N[C@H](C)C(=O)[O-])=O)C(=O)[O-])=O)C)[C@@H](NC(=O)C)2))([O-])=O)(=O)[O-]" -"NAcMur-5Peptide-NAcGlc-Undecaprenols" "an Und-PP-[β-D-GlcNAc-(1→4)]-N-acetylmuramoyl-(pentapeptide)" ["a GlcNAc-(1->4)-MurNAc-pentapeptide-diphosphoundecaprenol", "a β-D-GlcNAc-(1→4)-N-acetylmuramoyl-(pentapeptide)-PP-Und"] null null -3 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(OP(O[C@H]2(O[C@H](CO)[C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](NC(=O)C)1))[C@H](O[C@@H](C(=O)N[C@@H](C)C(N[C@H](CCC(=O)N[C@@H](CCCC([R])[NH3+])C(N[C@H](C)C(=O)N[C@H](C)C(=O)[O-])=O)C(=O)[O-])=O)C)[C@@H](NC(=O)C)2))([O-])=O)(=O)[O-]" -"NAcMur-Peptide-NAcGlc-Undecaprenols" "a lipid II" ["a peptidoglycan monomer", "an undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl peptide", "an undecaprenyldiphospho-4-O-(N-acetyl-β-D-glucosaminyl)-3-O-peptidyl-α-N-acetylmuramate", "Und-PP-[β-D-GlcNAc-(1→4)]-MurNAc-(peptide)"] null null -3 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(OP(O[C@H]2(O[C@H](CO)[C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](NC(=O)C)1))[C@H](O[C@@H](C(=O)N[C@@H](C)C(N[C@H](CCC(=O)N[C@@H](CCCC([R])[NH3+])C(N[C@H](C)C(=O)N[C@H](C)C(=O)[O-])=O)C(=O)[O-])=O)C)[C@@H](NC(=O)C)2))([O-])=O)(=O)[O-]" +"NAcMur-4Peptide-NAcGlc-Undecaprenols" "a lipid II (containing a tetrapeptide)" ["a GlcNAc-(1->4)-MurNAc-tetrapeptide-diphosphoundecaprenol", "a β-D-GlcNAc-(1→4)-N-acetylmuramoyl-(tetrapeptide)-PP-Und", "an Und-PP-[β-D-GlcNAc-(1→4)]-N-acetylmuramyl-(tetrapeptide)"] null null -3 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(OP(O[C@H]2(O[C@H](CO)[C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](NC(=O)C)1))[C@H](O[C@@H](C(=O)N[C@@H](C)C(N[C@H](CCC(=O)N[C@@H](CCCC([R])[NH3+])C(N[C@H](C)C(=O)[O-])=O)C(=O)[O-])=O)C)[C@@H](NC(=O)C)2))([O-])=O)(=O)[O-]" +"NAcMur-5Peptide-NAcGlc-Undecaprenols" "a lipid II (containing a pentapeptide)" ["a GlcNAc-(1->4)-MurNAc-pentapeptide-diphosphoundecaprenol", "a β-D-GlcNAc-(1→4)-N-acetylmuramoyl-(pentapeptide)-PP-Und", "an Und-PP-[β-D-GlcNAc-(1→4)]-N-acetylmuramoyl-(pentapeptide)"] null null -3 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(OP(O[C@H]2(O[C@H](CO)[C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](NC(=O)C)1))[C@H](O[C@@H](C(=O)N[C@@H](C)C(N[C@H](CCC(=O)N[C@@H](CCCC([R])[NH3+])C(N[C@H](C)C(=O)N[C@H](C)C(=O)[O-])=O)C(=O)[O-])=O)C)[C@@H](NC(=O)C)2))([O-])=O)(=O)[O-]" +"NAcMur-Peptide-NAcGlc-Undecaprenols" "a lipid II" ["a peptidoglycan monomer", "an undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl peptide", "an undecaprenyldiphospho-4-O-(N-acetyl-β-D-glucosaminyl)-3-O-peptidyl-α-N-acetylmuramate", "Und-PP-[β-D-GlcNAc-(1→4)]-MurNAc-(peptide)"] null null -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP(OP(O[C@H]2(O[C@H](CO)[C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](NC(=O)C)1))[C@H](O[C@@H](C(=O)N[a peptide])C)[C@@H](NC(=O)C)2))([O-])=O)(=O)[O-]" "Nacsent-Peptidoglycan" "a nascent peptidoglycan molecule" [] null null 0 null "NAD" "NAD+" ["NAD+", "beta-nicotinamide adenine dinucleotide", "coenzyme I", "diphosphopyridine nucleotide", "diphosphopyridine nucleotide oxidized", "nicotinamide adenine dinucleotide", "nicotinamide adenine dinucleotide oxidized", "NAD-oxidized", "NAD-ox", "DPN+", "DPN-ox", "DPN", "β-nicotinamide adenine dinucleotide", "NAD", "β-NAD+"] "C21H26N7O14P2" 662.422 -1 "c1([n+](cccc1C(N)=O)[C@@H]5(O[C@H](COP(OP(OC[C@H]4(O[C@@H](n2(c3(c(nc2)c(N)ncn3)))[C@H](O)[C@H](O)4))(=O)[O-])(=O)[O-])[C@@H](O)[C@@H](O)5))" "NAD-P-OR-NOP" "NAD(P)+" ["NAD(P)", "NAD(P)+", "β-NAD(P)+"] null null -1 "c1([n+](cc(cc1)C(=O)N)[C@@H]2(O[C@@H]([C@H]([C@H]2O)O)COP(OP(OC[C@H]5(O[C@@H](n3(c4(c(nc3)c(N)ncn4)))[C@H](O[R])[C@H](O)5))(=O)[O-])(=O)[O-]))" @@ -6012,7 +6014,7 @@ "NITROUS-OXIDE" "nitrous oxide" ["N2O"] "N2O" 44.013 0 "N#N=O" "NMNH" "reduced β-nicotinamide D-ribonucleotide" ["nicotinamide mononucleotide (reduced)", "NMNH"] "C11H15N2O8P" 334.222 -2 "C1(/N(\C=C/CC(/C(N)=O)=1)[C@@H]2(O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@@H](O)2))" "NMP-Sugars" "an NMP-sugar" ["a nucleoside monophosphate sugar"] null null 0 null -"NN-DIACETYLCHITOBIOSYLDIPHOSPHODOLICHO" "N-acetyl-β-D-glucosaminyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphosphodolichol" ["an {N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-α-D-glucosaminyl}diphosphodolichol", "an N,N'-diacetylchitobiosyldiphosphodolichol", "a chitobiosyldiphosphodolichol", "chitobiosyldiphosphodolichol", "N,N'-diacetylchitobiosyldiphosphodolichol", "an (N-acetylglucosaminyl)2-diphosphodolichol"] "C96H158N2O17P2" 1674.255 -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(CCOP(OP(O[C@H]2(O[C@H](CO)[C@@H](O[C@H]1([C@H](NC(=O)C)[C@H]([C@H](O)[C@@H](CO)O1)O))[C@H](O)[C@@H](NC(=O)C)2))(=O)[O-])(=O)[O-])C" +"NN-DIACETYLCHITOBIOSYLDIPHOSPHODOLICHO" "N-acetyl-β-D-glucosaminyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphosphodolichol" ["an {N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-α-D-glucosaminyl}diphosphodolichol", "an N,N'-diacetylchitobiosyldiphosphodolichol", "a chitobiosyldiphosphodolichol", "chitobiosyldiphosphodolichol", "N,N'-diacetylchitobiosyldiphosphodolichol", "an (N-acetylglucosaminyl)2-diphosphodolichol"] null null -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/[R]CC(/C)=C/CCC(CCOP(OP(O[C@H]2(O[C@H](CO)[C@@H](O[C@H]1([C@H](NC(=O)C)[C@H]([C@H](O)[C@@H](CO)O1)O))[C@H](O)[C@@H](NC(=O)C)2))(=O)[O-])(=O)[O-])C" "NN-Dimethyl-Ornithine-Lipid" "an N,N-dimethylornithine lipid" [] null null 0 "C([R1])[C@@H](OC(C[R2])=O)CC(=O)N[C@H](C([O-])=O)CCC[NH+](C)C" "NNN-Trimethyl-Ornithine-Lipid" "an N,N,N-trimethylornithine lipid" [] null null 0 "C([R1])[C@@H](OC(C[R2])=O)CC(=O)N[C@H](C([O-])=O)CCC[N+](C)(C)C" "No-Alkenyl-Thiohydroximate-O-Sulfates" "an N-(sulfonatooxy)alkanimidothioic acid without a terminal double bond" ["an aliphatic thiohydroximate-O-sulfate without a terminal alkene"] null null -1 "C(S)([R])=NOS(=O)(=O)[O-]" @@ -6079,10 +6081,10 @@ "O-Medium-Chain-Acyl-L-Carnitines" "an O-medium-chain-acyl-L-carnitine" [] null null 0 "C([C@H](OC(CCCCC[R])=O)CC(=O)[O-])[N+](C)(C)C" "O-Methylated-Amino-Acids" "an O-methylated amino acid" ["an O-methyl amino acid", "an amino acid methyl-ester"] null null 0 null "O-PHENANTHROLINE" "o-phenanthroline" ["1,10-phenanthroline", "1,10-fenanthroline", "1,10-o-phenanthroline", "2-phenanthroline", "orthophenanthroline", "β-phenanthroline"] "C12H8N2" 180.209 0 "c2(ccc3(ccc1(cccnc1c(n2)3)))" -"O-PHOSPHO-L-HOMOSERINE" "O-phospho-L-homoserine" ["o-phosphohomoserine"] "C4H8NO6P" 197.084 -2 "C(OP([O-])(=O)[O-])C[C@H]([NH3+])C([O-])=O" +"O-PHOSPHO-L-HOMOSERINE" "O-phospho-L-homoserine" ["o-phosphohomoserine"] "C4H8NO6P" 197.084 -2 "C(OP([O-])(=O)[O-])C[C@H]([NH3+])C([O-])=O" "O-phospho-phospho-alpha-glucans" "3-O-phospho-[6-O-phospho-α-glucan]" [] null null -4 "C(O)[C@@H]4([C@@H](O[R1])[C@H](O)[C@@H](O)[C@@H](O[C@H]3([C@H](O)[C@@H](O)[C@@H](O[C@H]2([C@H](OP([O-])(=O)[O-])[C@@H](O)[C@@H](O[C@H]1([C@H](O)[C@@H](O)[C@@H](O[R2])O[C@H](CO)1))O[C@H](COP([O-])(=O)[O-])2))O[C@H](CO)3))O4)" "O-Short-Chain-Acyl-L-Carnitines" "an O-short-chain-acyl-L-carnitine" [] null null 0 "C([C@H](OC([R])=O)CC(=O)[O-])[N+](C)(C)C" -"O-SUCCINYL-L-HOMOSERINE" "O-succinyl-L-homoserine" ["O-succinyl-homoserine", "succinyl-homoserine"] "C8H12NO6" 218.186 -1 "C(CC(=O)OCC[C@@H](C([O-])=O)[NH3+])C([O-])=O" +"O-SUCCINYL-L-HOMOSERINE" "O-succinyl-L-homoserine" ["O-succinyl-homoserine", "succinyl-homoserine"] "C8H12NO6" 218.186 -1 "C(CC(=O)OCC[C@@H](C([O-])=O)[NH3+])C([O-])=O" "O-SUCCINYLBENZOATE" "2-succinylbenzoate" ["o-succinyl-benzoate", "2-succinyl-benzoate", "o-succinylbenzoate", "4-(2-carboxyphenyl)-4-oxobutanoate"] "C11H8O5" 220.181 -2 "c1(ccc(C(=O)[O-])c(c1)C(=O)CCC(=O)[O-])" "OCTANOL" "octan-1-ol" ["1-octanol", "caprylic alcohol", "N-octanol", "octyl-alcohol", "N-octyl-alcohol", "octanol"] "C8H18O" 130.23 0 "CCCCCCCCO" "Octanoylated-domains" "a [lipoyl-carrier protein] N6-octanoyl-L-lysine" ["an octanoylated protein lipoyl-domain"] null null 0 "CCCCCCCC(=O)NCCCC[C@@H](C(=O)[a [lipoyl-carrier protein]])N[a [lipoyl-carrier protein]]" @@ -6118,7 +6120,7 @@ "OLIGOPHOSPHATE" "an oligophosphate" [] null null -3 "[O-]P([R])(=O)OP([O-])(=O)[O-]" "Oligoribonucleotides" "an oligoribonucleotide" [] null null 0 null "Oligosaccharide-Derivatives" "an oligosaccharide derivative" [] null null 0 null -"OLIGOSACCHARIDE-DIPHOSPHODOLICHOL" "dolichyl diphosphooligosaccharide" ["a (glucosyl)3-(mannosyl)9-(N-acetylglucosaminyl)2-diphosphodolichol", "a dolichyl diphosphooligosaccharide", "an {α-D-glucosyl-(1->2)-α-D-glucosyl-(1->3)-α-D-glucosyl-(1->3)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1,6)]-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "a (glucosyl)3-(mannosyl)9-(N-acetylglucosaminyl)2-PP-Dol", "(glucosyl)3-(mannosyl)9-(N-acetylglucosaminyl)2-PP-Dol", "{α-D-glucosyl-(1->2)-α-D-glucosyl-(1->3)-α-D-glucosyl-(1->3)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1->3)-[α-D-mannosyl-(1->2)-α-D-mannosyl-(1,6)]-α-D-mannosyl-(1,6)]-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-D-glucosaminyl}diphosphodolichol", "an oligosaccharide-diphosphodolichol", "(glucosyl)3-(mannosyl)9-(N-acetylglucosaminyl)2-diphosphodolichol"] null null -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(CCOP(OP(O[R])(=O)[O-])(=O)[O-])C" +"OLIGOSACCHARIDE-DIPHOSPHODOLICHOL" "a dolichyl diphosphooligosaccharide" ["a dolichyl diphosphooligosaccharide", "an oligosaccharide-diphosphodolichol"] null null -2 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(/C)=C/[R]CC(/C)=C/CCC(CCOP(OP(O[R])(=O)[O-])(=O)[O-])C" "Oligosaccharide-Lipid" "a lipid-linked oligosaccharide" ["an oligosaccharide attached to a lipid"] null null 0 null "Oligosaccharide-Phosphate" "an oligosaccharide phosphate" [] "C88H149N2O74P" 2450.088 0 "CC(N[C@@H]2([C@H]([C@@H]([C@H](O[C@@H](O[C@H]1([C@H](O)[C@@H](NC(C)=O)C(O[C@H](CO)1)OP(O)(=O)O))2)CO)O[C@H]3([C@H]([C@H]([C@@H]([C@H](O3)CO[C@@H]4([C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5([C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@@H]6([C@H]([C@H]([C@@H]([C@H](O6)CO)O)O)O)))O)O[C@@H]7([C@H]([C@H]([C@@H]([C@H](O7)CO)O)O)O[C@@H]8([C@H]([C@H]([C@@H]([C@H](O8)CO)O)O)O)))O))O)O[C@@H]9([C@H]([C@H]([C@@H]([C@H](O9)CO)O)O)O[C@@H]%10([C@H]([C@H]([C@@H]([C@H](O%10)CO)O)O)O[C@@H]%11([C@H]([C@H]([C@@H]([C@H](O%11)CO)O)O[C@@H]%12([C@@H]([C@H]([C@@H]([C@H](O%12)CO)O)O[C@@H]%13([C@@H]([C@H]([C@@H]([C@H](O%13)CO)O)O)O[C@@H]%14([C@@H]([C@H]([C@@H]([C@H](O%14)CO)O)O)O)))O))O))))O))O))=O" "Oligosaccharide-Protein" "a protein-linked oligosaccharide" ["an oligosaccharide attached to a protein"] null null 0 null @@ -6150,6 +6152,7 @@ "Organic-heteromonocyclic-compounds" "an organic heteromonocyclic compound" [] null null 0 null "Organic-Heteropolycyclic-Compounds" "an organic heteropolycyclic compound" [] null null 0 null "Organic-heteroptetracyclic-compounds" "an organic heterotetracyclic compound" [] null null 0 null +"Organic-heterotricyclic-compounds" "an organic heterotricyclic compound" [] null null 0 null "Organic-Hydroxy-Compounds" "an organic hydroxy compound" [] null null 0 null "Organic-Ions" "an organic ion" [] null null 0 null "Organic-Phosphates" "an organic phosphate" [] null null 0 null @@ -6263,7 +6266,7 @@ "Peptidoglycan-GlcNAC" "a peptidoglycan with N-acetyl-β-D-glucosamine at the non-reducing end" [] null null -1 "C[C@H](C(=O)N[C@H](C)C(=O)[O-])NC(=O)[C@H](CCCC([R2])[NH3+])NC(=O)CC[C@@H](NC(=O)[C@@H](NC([C@H](O[C@@H]2([C@@H](NC(=O)C)[C@H](O[R1])O[C@H](CO)[C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](NC(=O)C)1))2))C)=O)C)C(=O)[O-]" "Peptidoglycan-Internal-Segments" "a peptidoglycan internal segment" [] null null 0 null "Peptidoglycan-LD-crosslinks" "a peptidoglycan with L,D crosslinks" [] null null -2 "C[C@H](NC([C@H](O[C@@H]2([C@@H](NC(=O)C)[C@H](O[R3])O[C@H](CO)[C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O[R2])[C@H](O)[C@@H](NC(=O)C)1))2))C)=O)C(N[C@H](CCC(=O)N[C@@H](CCC[C@H](NC(=O)[C@H](CCC[C@H]([R4])[NH3+])NC(=O)CC[C@@H](NC(=O)[C@@H](NC([C@H](O[C@@H]4([C@@H](NC(=O)C)C5(OCC([C@@H](O[C@@H]3(O[C@H](CO)[C@@H](O[R1])[C@H](O)[C@@H](NC(=O)C)3))4)O5)))C)=O)C)C(=O)[O-])[R4])C(N[C@H](C)C(=O)[O-])=O)C(=O)[O-])=O" -"Peptidoglycan-Monomer" "a peptidoglycan monomer" ["a GlcNAc-(1->4)-MurNAc-peptide monomer", "a N-acetylglucosamine--N-acetylmuramoyl-(peptide) momer"] null null -1 "C[C@H](C(=O)N[C@H](C)C(=O)[O-])NC(=O)[C@H](CCCC([R])[NH3+])NC(=O)CC[C@@H](NC(=O)[C@@H](NC([C@H](O[C@@H]2([C@@H](NC(=O)C)C(O)O[C@H](CO)[C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](NC(=O)C)1))2))C)=O)C)C(=O)[O-]" +"Peptidoglycan-Monomer" "a peptidoglycan monomer" ["a GlcNAc-(1->4)-MurNAc-peptide monomer", "a N-acetylglucosamine--N-acetylmuramoyl-(peptide) momer"] null null 0 "C[C@@H](O[C@@H]2([C@@H](NC(=O)C)C(O)O[C@H](CO)[C@@H](O[C@@H]1(O[C@H](CO)[C@@H](O)[C@H](O)[C@@H](NC(=O)C)1))2))C(=O)N[a peptide]" "Peptidoglycan-tetrapeptides" "a peptidoglycan tetrapeptide" ["L-alanyl-γ-D-glutamyl-L-lysyl/meso-2,6-diaminopimeloyl-D-alanine", "L-Ala-γ-D-Glu-L-Lys/meso-A2pm-D-Ala", "L-alanyl-γ-D-glutamyl-L-lysyl/meso-2,6-diaminoheptanedioyl-D-alanine"] null null 0 "C[C@H]([NH3+])C(=O)N[C@H](CCC(=O)N[C@H](C(N[C@H](C)C([O-])=O)=O)CCCC([NH3+])[R])C(=O)[O-]" "Peptidoglycan-With-Cle-Pentagly-Bridges" "a peptidoglycan internal segment with cleaved pentaglycine bridge" [] null null 0 "C[C@H](C(N[C@@H](C(=O)[O-])C)=O)NC(=O)[C@H](CCCCNC(CNC(CNC(CNC(CNC(C[NH3+])=O)=O)=O)=O)=O)NC(=O)CC[C@@H](NC(=O)[C@@H](NC(=O)[C@@H](C)O[C@H]4([C@H](O[C@@H]3(O[C@H](CO)[C@@H](O[C@H]2([C@H](NC(=O)C)[C@@H](O[C@H](C)C(=O)N[C@@H](C)C(=O)N[C@H](CCC(=O)N[C@@H](CCCCNC(CNC(CNC(CNC(CNC(C[NH3+])=O)=O)=O)=O)=O)C(N[C@H](C)C([O-])=O)=O)C(=O)N)[C@H](O[C@@H]1(O[C@H](CO)[C@@H](O[R1])[C@H](O)[C@@H](NC(=O)C)1))[C@@H](CO)O2))[C@H](O)[C@@H](NC(=O)C)3))[C@@H](CO)O[C@H]([C@H](NC(=O)C)4)O[R2]))C)C(=O)N" "Peptidoglycan-with-crosslinks" "a peptidoglycan with cross-links" [] null null 0 null @@ -6294,6 +6297,7 @@ "Phenolphthiotriol-B" "a phenolphthiotriol B" [] null null 0 "C[C@H]([C@H](O)C)CCCC[C@@H](O)C[C@H](O)CCCCCCCCCCCCC[R]c1(ccc(O)cc1)" "Phenols" "a phenol" [] null null 0 "c1(c(c([R5])c(c([R1])c([R2])1)O)[R4])[R3]" "Phenothiazines" "a phenothiazine" [] "C12H9NS" 199.27 0 "c3(cc2(Nc1(ccccc1Sc2cc3)))" +"Phenoxazines" "a phenoxazine" ["phenoxazines"] null null 0 null "Phenoxyl-rad-of-phenolic-donors" "a phenoxyl radical of a phenolic donor" [] null null 0 "c1([R])(ccc(O)cc1)" "Phenyl-Acetates" "a phenyl acetate" [] null null 0 "CC(=O)Oc1(c([R1])c([R2])c(c(c([R5])1)[R4])[R3])" "PHENYL-PYRUVATE" "3-phenyl-2-oxopropanoate" ["α-ketohydrocinnamic acid", "keto-phenylpyruvate", "phenylpyruvate", "3-phenylpyruvate", "3-phenylpyruvic acid", "2-oxo-3-phenylpropanoate"] "C9H7O3" 163.152 -1 "C([O-])(=O)C(=O)Cc1(ccccc1)" @@ -6311,7 +6315,7 @@ "PHMB" "p-hydroxymercuribenzoate" ["(p-carboxyphenyl)hydroxymercury", "p-hydroxymercuribenzoic acid", "PHMB"] "C7H5O3Hg" 337.705 -1 "c1(ccc(cc1)C(=O)[O-])[Hg]O" "Phosphatase-2A-leucine" "a [phosphatase 2A protein] C-terminal L-leucine" ["a C-terminal [phosphatase 2A protein]-leucine"] null null -1 "CC(C)C[C@@H](C([O-])=O)N[a phosphatase-2A]" "Phosphatase-2A-leucine-methyl-ester" "a [phosphatase 2A protein] C-terminal L-leucine methyl ester" ["a C-terminal [phosphatase 2A protein]-leucine methyl ester"] null null 0 "CC(C)C[C@@H](C(OC)=O)N[a phosphatase-2A]" -"PHOSPHATE-GROUP" "a phosphate group" [] "O4P" 94.971 -3 "[O-]P([O-])([O-])=O" +"PHOSPHATE-GROUP" "a phosphate group" [] null null -2 "O([R])P([O-])([O-])=O" "Phosphates" "an inorganic phosphate" [] null null 0 null "Phosphatidates-34-1" "phosphatidate-34:1" ["phosphatidic acid-34:1", "PA-34:1", "PA34:1"] null null 0 null "Phosphatidates-34-2" "phosphatidate-34:2" ["phosphatidic acid-34:2", "PA-34:2", "PA34:2"] null null 0 null @@ -6375,6 +6379,7 @@ "Phosphatidylglycerols-34-3" "phosphatidylglycerol-34:3" ["PG-34:3", "PG34:3"] null null -1 "C(O)[C@@H](COP([O-])(=O)OC[C@H](OC(=O)[R2])COC(=O)[R1])O" "Phosphatidylglycerols-34-4" "phosphatidylglycerol-34:4" ["PG-34:4", "PG34:4"] null null -1 "C(O)[C@@H](COP([O-])(=O)OC[C@H](OC(=O)[R2])COC(=O)[R1])O" "PHOSPHATIDYLINOSITOL-345-TRIPHOSPHATE" "1-phosphatidyl-1D-myo-inositol 3,4,5-trisphosphate" ["1-phosphatidyl-1D-myo-inositol 3,4,5-triphosphate", "phosphatidyl inositol-3,4,5-trisphosphate", "phosphatidylinositol-3,4,5-triphosphate", "PtdIns(3,4,5)P3"] null null -7 "C(OC(=O)[R1])[C@H](COP(=O)([O-])O[C@@H]1([C@H](O)[C@H](OP([O-])([O-])=O)[C@@H](OP(=O)([O-])[O-])[C@H](OP(=O)([O-])[O-])[C@@H](O)1))OC(=O)[R2]" +"Phosphatidylinositol-Mannosides" "a phosphatidylinositol mannoside" [] null null 0 null "Phosphatidylinositols" "a phosphatidylinositol" ["PI"] null null -1 "C(OC(=O)[R1])[C@H](COP(=O)([O-])O[C@@H]1([C@H](O)[C@H](O)[C@@H](O)[C@H](O)[C@@H](O)1))OC(=O)[R2]" "Phosphatidylinositols-34-1" "phosphatidylinositol-34:1" ["PI-34:1", "PI34:1"] null null 0 null "Phosphatidylinositols-34-2" "phosphatidylinositol-34:2" ["PI-34:2", "PI34:2"] null null 0 null @@ -6454,7 +6459,7 @@ "Phthiocerols" "a phthiocerol" [] null null 0 "C([R2])CCCCCCCCCCCCCC[C@@H](O)C[C@H](O)CCCC[C@H](C)[C@H](OC)C[R1]" "Phthiodiolenone-A" "a phthiodiolenone A" [] null null 0 "C([R])CCCCCCCCCCCCCC[C@@H](O)C[C@H](O)CCC/C=C(C)/C(=O)CC" "Phthiodiolenone-B" "a phthiodiolenone B" [] null null 0 "C([R])CCCCCCCCCCCCCCC(O)CC(O)CCC/C=C(C)/C(=O)C" -"Phthiodiolenones" "a phthiodiolenone" [] null null 0 "C([R2])CCCCCCCCCCCCCCC(O)CC(O)CCC/C=C(C)/C(=O)C[R1]" +"Phthiodiolenones" "a phthiodiolenone" [] null null 0 "C([R2])CCCCCCCCCCCCCC[C@@H](O)C[C@H](O)CCC/C=C(C)/C(=O)C[R1]" "Phthiodiolone-A" "a phthiodiolone A" [] null null 0 "C([R])CCCCCCCCCCCCCC[C@@H](O)C[C@H](O)CCCC[C@H](C)C(=O)CC" "Phthiodiolone-B" "a phthiodiolone B" [] null null 0 "C([R])CCCCCCCCCCCCCC[C@@H](O)C[C@H](O)CCCC[C@H](C)C(=O)C" "Phthiodiolones" "a phthiodiolone" [] null null 0 "C([R2])CCCCCCCCCCCCCC[C@@H](O)C[C@H](O)CCCC[C@H](C)C(=O)C[R1]" @@ -6763,7 +6768,7 @@ "Pyrimidines" "a pyrimidine" ["a pyrimidine-related compound"] null null 0 null "Pyrimidodiazepines" "a pyrimidodiazepine" [] null null 0 null "PYROGALLOL" "pyrogallol" ["1,2,3-trihydroxybenzene", "1,2,3-benzenetriol", "C.I. oxidation base 32", "C.I. 76515", "fouramine base ap", "fouramine brown AP", "fourrine 85", "fourrine PG", "piral", "pyro", "pyrogallic acid", "benzene-1,2-3-triol"] "C6H6O3" 126.112 0 "c1(cc(O)c(O)c(c1)O)" -"PYROPHOSPHATE-GROUP" "a pyrophosphate group" [] "HO7P2" 174.951 -3 "[O-]P(OP(=O)([O-])O)(=O)[O-]" +"PYROPHOSPHATE-GROUP" "a pyrophosphate group" [] null null -3 "[O-]P(OP(=O)([O-])O[R])(=O)[O-]" "Pyrophosphate-inositol-phosphates" "a pyrophosphate-containing inositol phosphate" ["a diphospho-myo-inositol pentakisphosphate", "a diphospho-myo-inositol polyphosphate"] null null 0 null "Pyrroles" "a pyrrole" [] "C4H5N" 67.09 0 "c1(cc[nH]c1)" "Pyrrolidine-Diones" "a pyrrolidine dione" [] null null 0 "CC(C)[C@@H](C(C1(C(=O)NC(=O)[C@@H](C)1))=O)NC(=O)C[C@H](N[R])c2(ccccc2)" @@ -6784,7 +6789,7 @@ "QUINOLINATE" "quinolinate" ["2,3-pyridinedicarboxylic acid", "2,3-pyridinedicarboxylate", "quinolinic acid", "pyridine-2,3-dicarboxylic acid", "pyridine-2,3-dicarboxylate"] "C7H3NO4" 165.105 -2 "c1(ccc(c(C([O-])=O)n1)C([O-])=O)" "Quinolines" "a quinoline" [] null null 0 null "Quinolones" "a quinolone" ["a quinolinone"] null null 0 null -"Quinones" "a quinone" ["quinone"] null null 0 "c1([R4])(c([R3])c(=O)c([R3])c([R1])c(=O)1)" +"Quinones" "a quinone" [] null null 0 "c1([R4])(c([R3])c(=O)c([R3])c([R1])c(=O)1)" "Quinovose" "quinovose" [] null null 0 null "R--ALLANTOIN" "(R)-(-)-allantoin" ["R-allantoin"] "C4H6N4O3" 158.116 0 "[C@@H]1(NC(=O)N)(NC(=O)NC(=O)1)" "R-2-Haloacids" "an (R)-2-halocarboxylate" ["an (R)-2-haloacid"] null null -1 "C(=O)([O-])[C@H]([X])[R]" @@ -6803,7 +6808,6 @@ "Receptor-protein-Ser-or-Thr" "a [receptor protein] Ser/Thr" ["a [receptor protein]-(L-serine/L-threonine)", "a [receptor protein]-L-serine/L-threonine"] null null 0 "C(=O)([a receptor protein])[C@@H](N[a receptor protein])C([R])O" "Receptor-Protein-Ser-or-Thr-phosphate" "a [receptor protein] (L-serine/L-threonine) phosphate" [] null null -2 "C(=O)([a receptor protein])[C@H](C([R])OP([O-])([O-])=O)N[a receptor protein]" "Red-Alage-Galactans" "a red algal galactan" [] null null 0 null -"Redox-Electron-Carriers" "a redox electron carrier" [] null null 0 null "Reduced-Factor-F420" "a reduced factor 420" ["a reduced cofactor F420", "a reduced coenzyme F420"] null null -1 "C[C@@H](C(=O)[R])OP([O-])(=O)OC[C@@H](O)[C@@H](O)[C@@H](O)CN3(c1(c(c(=O)[nH]c(=O)[nH]1)Cc2(ccc(O)cc23)))" "Reduced-Flavins" "a reduced flavin" [] null null 0 "Cc1(cc2(c(cc(C)1)N([R])c3(c(N2)c(=O)[nH]c(=O)[nH]3)))" "REDUCED-MENAQUINONE" "menaquinol-8" ["reduced menaquinone-8", "MKH2-8"] "C51H74O2" 719.144 0 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/CCC(\C)=C/Cc2(c(C)c(O)c1(ccccc1c(O)2))" @@ -6845,7 +6849,6 @@ "Ribonucleosides-in-rRNA" "a ribonucleoside within rRNA" [] null null 0 null "Ribonucleosides-in-tRNA" "a ribonucleoside within tRNA" [] null null 0 null "Ribonucleotides" "a ribonucleotide" [] null null -2 "C(OP(=O)([O-])[O-])[C@H]1(O[C@@H]([a nucleobase])[C@H](O)[C@H](O)1)" -"RIBOSE" "D-ribose" ["ribose"] "C5H10O5" 150.131 0 "C(=O)[C@H](O)[C@H](O)[C@H](O)CO" "Ribose" "ribose" ["Rib"] null null 0 null "RIBOSE-15-BISPHOSPHATE" "α-D-ribose 1,5-bisphosphate" ["ribose-1,5-bisphosphate"] "C5H8O11P2" 306.059 -4 "C(OP(=O)([O-])[O-])[C@H]1(O[C@@H]([C@@H]([C@@H]1O)O)OP([O-])(=O)[O-])" "RIBOSE-1P" "α-D-ribose-1-phosphate" ["D-ribose-1-phosphate", "α-D-ribose-1P", "α-D-ribofuranose 1-phosphate", "ribose-1-phosphate"] "C5H9O8P" 228.095 -2 "C(O)[C@H]1(O[C@H](OP([O-])(=O)[O-])[C@H](O)[C@H](O)1)" @@ -6883,17 +6886,17 @@ "RNA-Uridines" "a uridine in RNA" [] null null 0 null "RNAs-Hypoxanthines" "a hypoxanthine in RNA" ["a RNA hypoxanthine"] null null -2 "C(OP(=O)([O-])O[a ribonucleic acid])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]cn2)))[C@H](O)[C@H](OP(=O)(O[a ribonucleic acid])[O-])3)" "Rotenoids" "a rotenone" [] null null 0 "C4([R9])(Oc1(c(c([R4])c([R3])c([R2])c([R1])1)C3(C(=O)c2(c([R5])c([R6])c([R7])c([R8])c2OC34))))" -"rRNA-Adenines" "an adenine in rRNA" ["a rRNA adenine"] null null -2 "C(OP(=O)([O-])O[rRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[rRNA])[O-])3)" -"rRNA-Adenosines" "an adenosine in rRNA" ["a rRNA adenosine"] null null -2 "C(OP(=O)([O-])O[rRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[rRNA])[O-])3)" -"rRNA-Containing-2-O-Methylguanosine" "a 2'-O-methylguanosine in rRNA" ["an rRNA containing 2'-O-methylguanosine"] null null -2 "CO[C@@H]3([C@H](OP(=O)(O[rRNA])[O-])[C@@H](COP(=O)([O-])O[rRNA])O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))3)" -"rRNA-Cytidines" "a cytidine in rRNA" ["a rRNA cytidine"] null null -2 "C(OP(=O)([O-])O[rRNA])[C@H]2(O[C@@H](n1(ccc(N)nc(=O)1))[C@H](O)[C@H](OP(=O)(O[rRNA])[O-])2)" -"rRNA-Cytosines" "a cytosine in rRNA" ["a rRNA cytosine"] null null -2 "C(OP(=O)([O-])O[rRNA])[C@H]2(O[C@@H](n1(c(nc(cc1)N)=O))[C@H](O)[C@H](OP(=O)(O[rRNA])[O-])2)" -"rRNA-Guanines" "a guanine in rRNA" ["rRNA guanine"] null null -2 "C(OP(=O)([O-])O[rRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[rRNA])[O-])3)" -"rRNA-Guanosines" "a guanosine in rRNA" [] null null -2 "C(OP(=O)([O-])O[rRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[rRNA])[O-])3)" +"rRNA-Adenines" "an adenine in rRNA" ["a rRNA adenine"] null null -2 "C(OP(=O)([O-])O[a ribosomal RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a ribosomal RNA])[O-])3)" +"rRNA-Adenosines" "an adenosine in rRNA" ["a rRNA adenosine"] null null -2 "C(OP(=O)([O-])O[a ribosomal RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a ribosomal RNA])[O-])3)" +"rRNA-Containing-2-O-Methylguanosine" "a 2'-O-methylguanosine in rRNA" ["an rRNA containing 2'-O-methylguanosine"] null null -2 "CO[C@@H]3([C@H](OP(=O)(O[a ribosomal RNA])[O-])[C@@H](COP(=O)([O-])O[a ribosomal RNA])O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))3)" +"rRNA-Cytidines" "a cytidine in rRNA" ["a rRNA cytidine"] null null -2 "C(OP(=O)([O-])O[a ribosomal RNA])[C@H]2(O[C@@H](n1(ccc(N)nc(=O)1))[C@H](O)[C@H](OP(=O)(O[a ribosomal RNA])[O-])2)" +"rRNA-Cytosines" "a cytosine in rRNA" ["a rRNA cytosine"] null null -2 "C(OP(=O)([O-])O[a ribosomal RNA])[C@H]2(O[C@@H](n1(c(nc(cc1)N)=O))[C@H](O)[C@H](OP(=O)(O[a ribosomal RNA])[O-])2)" +"rRNA-Guanines" "a guanine in rRNA" ["rRNA guanine"] null null -2 "C(OP(=O)([O-])O[a ribosomal RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a ribosomal RNA])[O-])3)" +"rRNA-Guanosines" "a guanosine in rRNA" [] null null -2 "C(OP(=O)([O-])O[a ribosomal RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a ribosomal RNA])[O-])3)" "rRNA-Holder" "an rRNA" [] null null -3 "C(OP(=O)([O-])O[a ribonucleic acid])[C@H]2(O[C@@H]([a nucleobase])[C@H](O)[C@H](OP(OC[C@H]1(O[C@@H]([a nucleobase])[C@H](O)[C@H](OP(=O)(O[a ribonucleic acid])[O-])1))(=O)[O-])2)" -"rRNA-Pseudouridines" "a pseudouridine in rRNA" ["rRNA containing pseudouridine", "an rRNA pseudouridine"] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[rRNA])[C@@H](OP(=O)(O[rRNA])[O-])[C@@H](O)2))" -"rRNA-Uracil" "a uracil in rRNA" [] null null -2 "C(OP(=O)([O-])O[rRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[rRNA])[O-])2)" -"rRNA-uridines" "a uridine in rRNA" ["an rRNA uridine"] null null -2 "C(OP(=O)([O-])O[rRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[rRNA])[O-])2)" +"rRNA-Pseudouridines" "a pseudouridine in rRNA" ["rRNA containing pseudouridine", "an rRNA pseudouridine"] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a ribosomal RNA])[C@@H](OP(=O)(O[a ribosomal RNA])[O-])[C@@H](O)2))" +"rRNA-Uracil" "a uracil in rRNA" [] null null -2 "C(OP(=O)([O-])O[a ribosomal RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a ribosomal RNA])[O-])2)" +"rRNA-uridines" "a uridine in rRNA" ["an rRNA uridine"] null null -2 "C(OP(=O)([O-])O[a ribosomal RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a ribosomal RNA])[O-])2)" "RS-3-Sulfolactate" "3-sulfolactate" [] "C3H4O6S" 168.121 -2 "C(=O)([O-])C(O)CS(=O)(=O)[O-]" "RS-Malate" "(RS)-malate" ["(RS)-malic acid", "DL-apple acid", "DL-malic acid", "hydroxysuccinic acid", "hydroxybutanedioic acid", "malic acid", "DL-malate", "malate", "2-hydroxybutanedioate"] "C4H4O5" 132.073 -2 "C(=O)([O-])CC(O)C([O-])=O" "Rubbers" "rubber" ["natural rubber"] null null -3 "CC(C)=CCCC(\C)=C/CCC(\C)=C/CC[R]CC(/C)=C/CCC(/C)=C/CCC(/C)=C/COP([O-])(=O)OP(=O)([O-])[O-]" @@ -7027,7 +7030,7 @@ "Smooth-Form-LPS" "a smooth-form lipopolysaccharide" ["smooth-form LPS", "(S)-form LPS"] null null 0 null "SN-3-D-GALACTOSYL-SN-2-ACYLGLYCEROL" "an sn-3-D-galactosyl-sn-2-acylglycerol" ["a monogalactosyl-monoacylglycerol"] null null 0 "C(O[C@@H]1(O[C@H](CO)[C@H](O)[C@H](O)[C@@H](O)1))[C@@H](CO)OC(=O)[R]" "SN-GLYCEROL-1-PHOSPHATE" "sn-glycerol 1-phosphate" ["D-glycerol 3-phosphate", "L-glycerol 1-phosphate"] "C3H7O6P" 170.058 -2 "C(OP([O-])(=O)[O-])[C@@H](O)CO" -"snRNA-Adenines" "an adenine in snRNA" ["an snRNA adenine"] null null -2 "C(OP(=O)([O-])O[small nuclear RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[small nuclear RNA])[O-])3)" +"snRNA-Adenines" "an adenine in snRNA" ["an snRNA adenine"] null null -2 "C(OP(=O)([O-])O[a small nuclear RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a small nuclear RNA])[O-])3)" "SO3" "sulfite" ["SO3", "SO3-2"] "O3S" 80.058 -2 "[O-]S([O-])=O" "Soluble-Heteroglycans" "a plant soluble heteroglycan" ["SHG"] null null 0 null "Soluble-Heteroglycans-LI" "SHGLI" ["a soluble heteroglycan fraction LI (plants)", "a soluble heteroglycan LI"] null null 0 null @@ -7123,6 +7126,7 @@ "SULFONATES" "a sulfonate" ["an organosulfonate", "a sulfonic acid"] null null -1 "O=S([R])(=O)[O-]" "Sulfones" "a sulfone" [] null null 0 "O=S([R1])([R2])=O" "SULFOQUINOVOSYLDIACYLGLYCEROL" "a 1,2-diacyl-3-(6-sulfo-α-D-quinovosyl)-sn-glycerol" ["a 6-sulfo-α-D-quinovosyl diacylglycerol", "SQDG"] null null -1 "C(OC(=O)[R1])[C@@H](OC(=O)[R2])CO[C@@H]1([C@H](O)[C@H]([C@H](O)[C@@H](CS(=O)(=O)[O-])O1)O)" +"Sulfur-Containing-Carboxylates" "a sulfur-containing carboxylate" ["S-containing carboxylic acid", "S-containing carboxylic acids", "sulfur-containing carboxylic acids"] null null 0 null "SULFUR-DIOXIDE" "sulfur dioxide" ["SO2", "sulphur dioxide"] "O2S" 64.059 0 "O=S=O" "SUPER-OXIDE" "superoxide" ["superoxide anion", "peroxide radical"] "O2" 31.999 -1 "[O-]O" "Sweetening-Agent" "a sweetening agent" [] null null 0 null @@ -7217,7 +7221,6 @@ "Tetrapyrroles" "a tetrapyrrole" [] null null 0 null "Tetraric-Acids" "a tetrarate" ["a tetraric acid"] null null 0 null "Tetrasaccharides" "a tetrasaccharide" [] null null 0 null -"Tetrasaccharides-with-repeating-units" "a tetrasaccharide comprising two repeating units" [] null null 0 null "Tetraterpenes" "a tetraterpenoid" ["a tetraterpene"] null null 0 null "Tetritols" "a tetritol" [] null null 0 null "Tetronic-Acids" "a tetronate" ["a tetronic acid"] null null 0 null @@ -7227,6 +7230,7 @@ "THF-Derivatives" "a tetrahydrofolate derivative" ["a tetrahydropteroate-glutamate derivative"] null null 0 null "THF-GLU-N" "a tetrahydrofolate" ["tetrahydropteroyl polyglutamate", "THF(glu)n", "H4PteGlun", "a tetrahydrofolate-glutamate", "THF", "THF polyglutamate"] null null -1 "C([C@@H]2(Nc1(c([nH]c(nc1NC2)N)=O)))Nc3(ccc(C(N[C@H](C(=O)[O-])CCC([R])=O)=O)cc3)" "THI5-L-histidine" "[an HMP-P synthase]-L-histidine" ["[a 4-amino-2-methyl-5-phosphomethylpyrimidine synthase]-L-histidine", "a [THI5]-L-histidine"] null null 0 "C([C@H](Cc1(nc[nH]c1))N[a 4-amino-2-methyl-5-phosphomethylpyrimidine synthase])([a 4-amino-2-methyl-5-phosphomethylpyrimidine synthase])=O" +"Thia-Fatty-Acids" "a thia fatty acid" ["sulfur-containing fatty acid", "sulfur-containing fatty acids", "thia fatty acids"] null null 0 null "THIABENDAZOLE" "thiabendazole" [] "C10H7N3S" 201.245 0 "c3(nc(c1([nH]c2(ccccc(n1)2)))cs3)" "Thiabicycloalkanes" "a thiabicycloalkane" [] null null 0 null "THIAMINE" "thiamine" ["thiamin", "vitamin B1"] "C12H17N4OS" 265.352 1 "Cc2([n+](Cc1(c(N)nc(C)nc1))csc(CCO)2)" @@ -7244,12 +7248,12 @@ "Thioglucosides" "a thioglucoside" [] null null 0 "C(O)[C@@H]1([C@@H](O)[C@H](O)[C@@H](O)C(S[R])O1)" "THIOGLYCOLATE" "thioglycolate" ["mercaptoacetate", "thioglycolic acid", "mercaptoacetic acid"] "C2H3O2S" 91.104 -1 "C(C([O-])=O)S" "THIOHYDROXIMATE-O-SULFATES" "an N-(sulfonatooxy)alkanimidothioic acid" ["a thiohydroximate-O-sulfate"] null null -1 "C(S)([R])=NOS(=O)(=O)[O-]" -"THIOL-GROUP" "a thiol group" [] "CHS" 45.079 -3 "[C-3]S" +"THIOL-GROUP" "a thiol group" [] null null 0 "[R]S" "Thiols" "a thiol" ["a mercaptan"] null null 0 "S[R]" "Thiophenes" "a thiophene" [] null null 0 null "Thiopurine-Methylethers" "a thiopurine S-methylether" [] "C6H6N4S" 166.2 0 "CSc2(ncnc1(nc[nH]c12))" "Thiopurines" "a thiopurine" [] "C5H4N4S" 152.173 0 "c1([nH]c2(c(n1)ncnc(S)2))" -"THR" "L-threonine" ["T", "thre", "L-thr", "threonine", "2-amino-3-hydroxybutyric acid"] "C4H9NO3" 119.12 0 "C[C@@H](O)[C@H]([NH3+])C(=O)[O-]" +"THR" "L-threonine" ["T", "L-thr", "(2S,3R)-2-amino-3-hydroxybutyric acid", "(2S,3R)-2-amino-3-hydroxybutanoate"] "C4H9NO3" 119.12 0 "C[C@@H](O)[C@H]([NH3+])C(=O)[O-]" "Threitols" "a threitol" ["threo-tetritol"] null null 0 null "THREO-DS-ISO-CITRATE" "D-threo-isocitrate" ["(1R, 2S)-1-hydroxypropane-1,2,3-tricarboxylate", "D-threo-isocitric acid", "threo-Ds-isocitrate", "D-isocitrate"] "C6H5O7" 189.101 -3 "C(=O)([C@@H](CC([O-])=O)[C@@H](O)C([O-])=O)[O-]" "Threo-GGE" "threo-guaiacylglycerol-β-guaiacyl ether" ["threo-GGE"] "C17H20O6" 320.341 0 "COc1(ccccc1OC(CO)C(O)c2(cc(OC)c(O)cc2))" @@ -7270,7 +7274,6 @@ "TOLUENECISDHDIOL" "(1S,2R)-3-methylcyclohexa-3,5-diene-1,2-diol" ["toluene-cis-dihydrodiol", "toluene-cis-1,2-dihydrodiol", "(+)-cis-1S,2R-dihydroxy-3-methyl-cyclohexa-3,5-diene"] "C7H10O2" 126.155 0 "CC1(\[C@H]([C@H](\C=C/C=1)O)O)" "Toluenes" "a toluene" [] null null 0 null "TOPAQUINONE" "topaquinone" ["6-hydroxydopa quinone"] null null -1 "C(c1(cc(=O)c([O-])cc(=O)1))[C@H](N[a protein])C(=O)[a protein]" -"Toxins" "a toxin" [] null null 0 null "trans-2-cis-5-dienoyl-CoA" "a (2E,5Z)-alka-2,5-dienoyl-CoA" ["a trans2,cis-5-dienoyl-CoA"] null null -4 "C(\[R])=C\C/C=C/C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(=O)(OP(=O)(OC[C@@H]1([C@@H](OP([O-])(=O)[O-])[C@@H](O)[C@@H](O1)n3(c2(c(c(N)ncn2)nc3))))[O-])[O-]" "TRANS-2-HEXENAL" "(E)-2-hexenal" ["trans-2-hexenal"] "C6H10O" 98.144 0 "CCC/C=C/C=O" "TRANS-23-DEHYDROADIPYL-COA" "(2E)-5-carboxy-2-pentenoyl-CoA" ["cis-2,3-didehydroadipyl-CoA", "2,3-didehydroadipyl-CoA", "trans-2,3-dehydroadipyl-coA"] "C27H37N7O19P3S" 888.606 -5 "CC(C)([C@@H](O)C(=O)NCCC(=O)NCCSC(/C=C/CCC(=O)[O-])=O)COP(=O)(OP(=O)(OC[C@@H]1([C@@H](OP([O-])(=O)[O-])[C@@H](O)[C@@H](O1)n3(c2(c(c(N)ncn2)nc3))))[O-])[O-]" @@ -7304,86 +7307,85 @@ "TRIS-HYDROCHLORIDE" "tris-hydrochloride" ["tris-HCl"] "(HCl)(C4NH12O3)" 158.605 0 null "Trisaccharides" "a trisaccharide" [] null null 0 null "Triterpenes" "a triterpenoid" ["a triterpene"] null null 0 null -"tRNA-2-thiouridine" "a 2-thiouridine in tRNA" ["a tRNA 2-thiouridine"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](N1(\C=C/C(=O)NC(=S)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"tRNA-2-thiouridine34" "a 2-thiouridine34 in tRNA" ["a tRNA 2-thiouridine34"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](N1(\C=C/C(=O)NC(=S)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"tRNA-2methyladenine-37" "a 2-methyladenine37 in tRNA" [] null null -2 "Cc1(nc2(n(cnc(c(N)n1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))" -"tRNA-4-thiouridine" "a 4-thiouracil in tRNA" ["a tRNA 4-thioracil"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](N1(\C=C/C(=S)NC(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"tRNA-Adenine-22" "an adenine22 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" -"tRNA-adenine-37" "an adenine37 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" -"tRNA-Adenine-58" "an adenine58 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" -"tRNA-Adenine-9" "an adenine9 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" -"tRNA-Adenines" "an adenine in tRNA" ["a tRNA adenine"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" -"tRNA-Adenosines" "an adenosine in tRNA" ["a tRNA adenosine"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" -"tRNA-Adenosines-37" "an adenosine37 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" -"tRNA-archaeosine" "archaeosine at position 15 of an archaeal tRNA" ["G* tRNA", "7-amidino-7-deazaguanosine"] null null -1 "c1(n(c2(c(c(C(N)=[NH2+])1)c(=O)[nH]c(N)n2))[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3))" +"tRNA-2-thiouridine" "a 2-thiouridine in tRNA" ["a tRNA 2-thiouridine"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](N1(\C=C/C(=O)NC(=S)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"tRNA-2-thiouridine34" "a 2-thiouridine34 in tRNA" ["a tRNA 2-thiouridine34"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](N1(\C=C/C(=O)NC(=S)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"tRNA-2methyladenine-37" "a 2-methyladenine37 in tRNA" [] null null -2 "Cc1(nc2(n(cnc(c(N)n1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))" +"tRNA-4-thiouridine" "a 4-thiouracil in tRNA" ["a tRNA 4-thioracil"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](N1(\C=C/C(=S)NC(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"tRNA-Adenine-22" "an adenine22 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" +"tRNA-adenine-37" "an adenine37 in tRNA" ["an adenosine37 in tRNA"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" +"tRNA-Adenine-58" "an adenine58 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" +"tRNA-Adenine-9" "an adenine9 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" +"tRNA-Adenines" "an adenine in tRNA" ["a tRNA adenine"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" +"tRNA-Adenosines" "an adenosine in tRNA" ["a tRNA adenosine"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" +"tRNA-archaeosine" "archaeosine at position 15 of an archaeal tRNA" ["G* tRNA", "7-amidino-7-deazaguanosine"] null null -1 "c1(n(c2(c(c(C(N)=[NH2+])1)c(=O)[nH]c(N)n2))[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3))" "tRNA-Arg-adenosine34" "an adenosine34 in [tRNAArg2]" ["[tRNAArg2]-adenosine34"] null null -2 "C(OP(=O)([O-])O[a tRNAArg])[C@H]3(O[C@@H](n1(c2(c(nc1)c(N)ncn2)))[C@H](O)[C@H](OP(=O)(O[a tRNAArg])[O-])3)" "tRNA-Arg-inosine34" "an inosine34 in [tRNAArg2]" ["[tRNAArg2]-inosine34"] null null -2 "C(OP(=O)([O-])O[a tRNAArg])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]cn2)))[C@H](O)[C@H](OP(=O)(O[a tRNAArg])[O-])3)" -"tRNA-Containing-2-O-Methylcytidines" "a 2'-O-methylcytidine in tRNA" ["a tRNA containing 2'-O-methylcytidine"] null null -2 "CO[C@@H]2([C@H](OP(=O)(O[a tRNA])[O-])[C@@H](COP(=O)([O-])O[a tRNA])O[C@@H](n1(ccc(N)nc(=O)1))2)" -"tRNA-Containing-2-O-Methylguanosine" "a 2'-O-methylguanosine in tRNA" ["a tRNA containing 2'-O-methylguanosine"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" -"tRNA-Containing-2-O-Methyluridines" "a 2'-O-methyluridine in tRNA" ["a tRNA containing 2'-O-methyluridine"] null null -2 "CO[C@@H]2([C@H](OP(=O)(O[a tRNA])[O-])[C@@H](COP(=O)([O-])O[a tRNA])O[C@@H](n1(ccc(=O)[nH]c(=O)1))2)" -"tRNA-containing-5-2-Meoxy-2-OxEt-uridine" "a 5-(2-methoxy-2-oxoethyl)uridine in tRNA" ["a tRNA containing 5-(2-methoxy-2-oxoethyl)uridine", "an mcm5U in tRNA", "a 5-methoxycarbonylmethyl-uridine in tRNA"] null null -2 "COC(=O)Cc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-containing-5-CarbMeAminome-2-methUr" "a 5-carboxymethylaminomethyl-2'-O-methyluridine in tRNA" [] null null -3 "CO[C@@H]2([C@H](OP(=O)(O[a tRNA])[O-])[C@@H](COP(=O)([O-])O[a tRNA])O[C@@H](n1(cc(CNCC([O-])=O)c(=O)[nH]c(=O)1))2)" -"tRNA-containing-5-CarbMeAminome-2-ThioU" "a 5-carboxymethylaminomethyl-2-thiouridine34 in tRNA" ["a tRNA containing 5-carboxymethylaminomethyl-2-thiouridine34", "cmnm5s2U in tRNA"] null null -2 "C([NH2+]CC([O-])=O)C1(\C(=O)NC(=S)N(\C=1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-containing-5-CarbMeAminome-uridine" "a 5-carboxymethylaminomethyluridine34 in tRNA" ["a tRNA containing 5-carboxymethylaminomethyluridine34", "cmnm5U in tRNA"] null null -2 "C([NH2+]CC([O-])=O)c1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-Containing-5-Methylcytosine" "a 5-methylcytosine in tRNA" ["tRNA containing 5-methylcytidine", "tRNA containing 5-methylcytosine"] null null -2 "Cc1(c(N)nc(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-containing-5-taurinomethyluridine" "a 5-taurinomethyluridine in tRNA" ["a tRNA containing 5-taurinomethyluridine"] null null -3 "C(S(=O)(=O)[O-])CCNc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-Containing-5AminoMe-2-ThioUrdines" "a 5-(aminomethyl)-2-thiouridine34 in tRNA" ["a tRNA containing 5-(aminomethyl)-2-thiouridine34", "nm5s2U in tRNA"] null null -1 "C([NH3+])C1(\C(=O)NC(=S)N(\C=1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-containing-5Me-uridine" "a 5-methyluracil in tRNA" ["a tRNA containing 5-methyluracil"] null null -2 "Cc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-containing-5Me-uridine54" "a 5-methyluracil54 in tRNA" ["a tRNA containing 5-methyluracil54"] null null -2 "Cc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-Containing-5MeAminoMe-2-ThioU" "a 5-[(methylamino)methyl]-2-thiouridine34 in tRNA" ["a 5-[(methylamino)methyl]-2-thiouridylate34 in tRNA", "mnm5S2U"] null null -1 "C[NH2+]CC1(\C(=O)NC(=S)N(\C=1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-containing-CarbMe-uridine" "a carboxymethyluridine in tRNA" ["a tRNA containing carboxymethyluridine"] null null -3 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(cc(CC([O-])=O)c(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"tRNA-Containing-N1-Methyladenine" "an N1-methyladenine in tRNA" ["tRNA containing N1-methyladenine"] null null -2 "CN2(C(c1(ncn(c1\N=C/2)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))=N)" -"tRNA-Containing-N1-MethylAdenine-22" "N1-methyladenine22 in tRNA" [] null null -2 "CN2(C(c1(ncn(c1\N=C/2)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))=N)" -"tRNA-Containing-N1-MethylAdenine-58" "an N1-methyladenine58 in tRNA" [] null null -2 "CN2(C(c1(ncn(c1\N=C/2)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))=N)" -"tRNA-Containing-N1-MethylAdenine-9" "N1-methyladenine9 in tRNA" [] null null -2 "CN2(C(c1(ncn(c1\N=C/2)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))=N)" -"tRNA-Containing-N1-Methylguanine" "an N1-methylguanine in tRNA" ["a tRNA containing N1-methylguanine"] null null -2 "Cn2(c(=O)c1(ncn(c1nc(N)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))" -"tRNA-Containing-N1-Methylguanine-37" "an N1-methylguanine37 in tRNA" [] null null -2 "Cn2(c(=O)c1(ncn(c1nc(N)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))" -"tRNA-Containing-N1-Methylguanine-9" "an N1-methylguanine9 in tRNA" [] null null -2 "Cn2(c(=O)c1(ncn(c1nc(N)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))" -"tRNA-Containing-N2-DiMeGua-26-DiMeGua27" "an N2-dimethylguanine26/N2-dimethylguanine27" [] null null -3 "CN(C)c6(nc5(c(ncn([C@@H]1(O[C@@H]([C@@H](OP([O-])(=O)O[a tRNA])[C@@H](O)1)COP([O-])(=O)O[C@H]4([C@@H](O)[C@H](n2(cnc3(c2nc(N(C)C)[nH]c(=O)3)))O[C@H](COP(=O)([O-])O[a tRNA])4)))5)c(=O)[nH]6))" -"tRNA-Containing-N2-Dimetgua-26-MeGua27" "an N2-dimethylguanine26/N2-methylguanine27" [] null null -3 "CNc6(nc5(c(ncn([C@@H]1(O[C@@H]([C@@H](OP([O-])(=O)O[a tRNA])[C@@H](O)1)COP([O-])(=O)O[C@H]4([C@@H](O)[C@H](n2(cnc3(c2nc(N(C)C)[nH]c(=O)3)))O[C@H](COP(=O)([O-])O[a tRNA])4)))5)c(=O)[nH]6))" -"tRNA-Containing-N2-Dimethylgua-26-Gua27" "an N2 dimethylguanine26/guanine27 in tRNA" [] null null -3 "CN(C)c6(nc5(c(ncn([C@@H]4(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP([O-])(=O)OC[C@H]3(O[C@@H](n1(cnc2(c1nc(N)[nH]c(=O)2)))[C@H](O)[C@H](OP([O-])(=O)O[a tRNA])3))[C@@H](O)4))5)c(=O)[nH]6))" -"tRNA-Containing-N2-dimethylguanine-10" "an N2-dimethylguanine10 in tRNA" [] null null -2 "CN(C)c1(nc2(n(cnc(c(=O)[nH]1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))" -"tRNA-Containing-N2-dimethylguanine-26" "an N2dimethylguanine26 in tRNA" [] null null -2 "CN(C)c1(nc2(n(cnc(c(=O)[nH]1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))" -"tRNA-Containing-N2-Dimethylguanines" "an N2 dimethylguanine in tRNA" ["a tRNA containing N2 dimethylguanine"] null null -2 "CN(C)c1(nc2(n(cnc(c(=O)[nH]1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))" -"tRNA-Containing-N2-Methylgua-26-Gua27" "an N2-methylguanine26/guanine27 in tRNA" [] null null -3 "CNc6(nc5(c(ncn([C@@H]4(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP([O-])(=O)OC[C@H]3(O[C@@H](n1(cnc2(c1nc(N)[nH]c(=O)2)))[C@H](O)[C@H](OP([O-])(=O)O[a tRNA])3))[C@@H](O)4))5)c(=O)[nH]6))" -"tRNA-Containing-N2-Methylguanine" "an N2-methylguanine in tRNA" ["a tRNA containing N2-methylguanine"] null null -2 "CNc1(nc2(n(cnc(c(=O)[nH]1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))" -"tRNA-Containing-N2-Methylguanine-10" "an N2-methylguanine10 in tRNA" [] null null -2 "CNc1(nc2(n(cnc(c(=O)[nH]1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))" -"tRNA-Containing-N2-Methylguanine-26" "an N2-methylguanine26 in tRNA" [] null null -2 "CNc1(nc2(n(cnc(c(=O)[nH]1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))" -"tRNA-Containing-N2-Methylguanine-6" "an N2-methylguanine6 in tRNA" [] null null -2 "CNc1(nc2(n(cnc(c(=O)[nH]1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))" -"tRNA-Containing-N7-Methylguanine-46" "an N7-methylguanine46 in tRNA" [] null null -1 "C[n+]1(c3(c(=O)[nH]c(N)nc(n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))3))" -"tRNA-Cytosines" "a cytosine in tRNA" ["a tRNA cytosine"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(c(nc(cc1)N)=O))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"tRNA-Dihydrouridines" "a 5,6-dihydrouridine in tRNA" ["a tRNA containing 5,6-dihydrouridine"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](N1(CCC(=O)NC(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"tRNA-Epoxyqueuosines" "a tRNA epoxyqueuosine" [] null null -2 "C(NC2([C@@H](O)[C@@H](O)[C@@H]1(O[C@@H]12)))c4(cn([C@@H]3(O[C@H](COP(O[a tRNA])(=O)[O-])[C@@H](OP([O-])(=O)O[a tRNA])[C@@H](O)3))c5(c4c(=O)[nH]c(N)n5))" -"tRNA-Guanines" "a guanine in tRNA" ["a tRNA containing guanine", "a tRNA guanine"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" -"tRNA-guanosine18" "a guanosine18 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" -"tRNA-Guanosines" "a guanosine in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" +"tRNA-Containing-2-O-Methylcytidines" "a 2'-O-methylcytidine in tRNA" ["a tRNA containing 2'-O-methylcytidine"] null null -2 "CO[C@@H]2([C@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](COP(=O)([O-])O[a transfer RNA])O[C@@H](n1(ccc(N)nc(=O)1))2)" +"tRNA-Containing-2-O-Methylguanosine" "a 2'-O-methylguanosine in tRNA" ["a tRNA containing 2'-O-methylguanosine"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" +"tRNA-Containing-2-O-Methyluridines" "a 2'-O-methyluridine in tRNA" ["a tRNA containing 2'-O-methyluridine"] null null -2 "CO[C@@H]2([C@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](COP(=O)([O-])O[a transfer RNA])O[C@@H](n1(ccc(=O)[nH]c(=O)1))2)" +"tRNA-containing-5-2-Meoxy-2-OxEt-uridine" "a 5-(2-methoxy-2-oxoethyl)uridine in tRNA" ["a tRNA containing 5-(2-methoxy-2-oxoethyl)uridine", "an mcm5U in tRNA", "a 5-methoxycarbonylmethyl-uridine in tRNA"] null null -2 "COC(=O)Cc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"tRNA-containing-5-CarbMeAminome-2-methUr" "a 5-carboxymethylaminomethyl-2'-O-methyluridine in tRNA" [] null null -3 "CO[C@@H]2([C@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](COP(=O)([O-])O[a transfer RNA])O[C@@H](n1(cc(CNCC([O-])=O)c(=O)[nH]c(=O)1))2)" +"tRNA-containing-5-CarbMeAminome-2-ThioU" "a 5-carboxymethylaminomethyl-2-thiouridine34 in tRNA" ["a tRNA containing 5-carboxymethylaminomethyl-2-thiouridine34", "cmnm5s2U in tRNA"] null null -2 "C([NH2+]CC([O-])=O)C1(\C(=O)NC(=S)N(\C=1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"tRNA-containing-5-CarbMeAminome-uridine" "a 5-carboxymethylaminomethyluridine34 in tRNA" ["a tRNA containing 5-carboxymethylaminomethyluridine34", "cmnm5U in tRNA"] null null -2 "C([NH2+]CC([O-])=O)c1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"tRNA-Containing-5-Methylcytosine" "a 5-methylcytosine in tRNA" ["tRNA containing 5-methylcytidine", "tRNA containing 5-methylcytosine"] null null -2 "Cc1(c(N)nc(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"tRNA-containing-5-taurinomethyluridine" "a 5-taurinomethyluridine in tRNA" ["a tRNA containing 5-taurinomethyluridine"] null null -3 "C(S(=O)(=O)[O-])CCNc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"tRNA-Containing-5AminoMe-2-ThioUrdines" "a 5-(aminomethyl)-2-thiouridine34 in tRNA" ["a tRNA containing 5-(aminomethyl)-2-thiouridine34", "nm5s2U in tRNA"] null null -1 "C([NH3+])C1(\C(=O)NC(=S)N(\C=1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"tRNA-containing-5Me-uridine" "a 5-methyluracil in tRNA" ["a tRNA containing 5-methyluracil"] null null -2 "Cc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"tRNA-containing-5Me-uridine54" "a 5-methyluracil54 in tRNA" ["a tRNA containing 5-methyluracil54"] null null -2 "Cc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"tRNA-Containing-5MeAminoMe-2-ThioU" "a 5-[(methylamino)methyl]-2-thiouridine34 in tRNA" ["a 5-[(methylamino)methyl]-2-thiouridylate34 in tRNA", "mnm5S2U"] null null -1 "C[NH2+]CC1(\C(=O)NC(=S)N(\C=1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"tRNA-containing-CarbMe-uridine" "a carboxymethyluridine in tRNA" ["a tRNA containing carboxymethyluridine"] null null -3 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(cc(CC([O-])=O)c(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"tRNA-Containing-N1-Methyladenine" "an N1-methyladenine in tRNA" ["tRNA containing N1-methyladenine"] null null -2 "CN2(C(c1(ncn(c1\N=C/2)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))=N)" +"tRNA-Containing-N1-MethylAdenine-22" "N1-methyladenine22 in tRNA" [] null null -2 "CN2(C(c1(ncn(c1\N=C/2)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))=N)" +"tRNA-Containing-N1-MethylAdenine-58" "an N1-methyladenine58 in tRNA" [] null null -2 "CN2(C(c1(ncn(c1\N=C/2)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))=N)" +"tRNA-Containing-N1-MethylAdenine-9" "N1-methyladenine9 in tRNA" [] null null -2 "CN2(C(c1(ncn(c1\N=C/2)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))=N)" +"tRNA-Containing-N1-Methylguanine" "an N1-methylguanine in tRNA" ["a tRNA containing N1-methylguanine"] null null -2 "Cn2(c(=O)c1(ncn(c1nc(N)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))" +"tRNA-Containing-N1-Methylguanine-37" "an N1-methylguanine37 in tRNA" [] null null -2 "Cn2(c(=O)c1(ncn(c1nc(N)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))" +"tRNA-Containing-N1-Methylguanine-9" "an N1-methylguanine9 in tRNA" [] null null -2 "Cn2(c(=O)c1(ncn(c1nc(N)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))" +"tRNA-Containing-N2-DiMeGua-26-DiMeGua27" "an N2-dimethylguanine26/N2-dimethylguanine27" [] null null -3 "CN(C)c6(nc5(c(ncn([C@@H]1(O[C@@H]([C@@H](OP([O-])(=O)O[a transfer RNA])[C@@H](O)1)COP([O-])(=O)O[C@H]4([C@@H](O)[C@H](n2(cnc3(c2nc(N(C)C)[nH]c(=O)3)))O[C@H](COP(=O)([O-])O[a transfer RNA])4)))5)c(=O)[nH]6))" +"tRNA-Containing-N2-Dimetgua-26-MeGua27" "an N2-dimethylguanine26/N2-methylguanine27" [] null null -3 "CNc6(nc5(c(ncn([C@@H]1(O[C@@H]([C@@H](OP([O-])(=O)O[a transfer RNA])[C@@H](O)1)COP([O-])(=O)O[C@H]4([C@@H](O)[C@H](n2(cnc3(c2nc(N(C)C)[nH]c(=O)3)))O[C@H](COP(=O)([O-])O[a transfer RNA])4)))5)c(=O)[nH]6))" +"tRNA-Containing-N2-Dimethylgua-26-Gua27" "an N2 dimethylguanine26/guanine27 in tRNA" [] null null -3 "CN(C)c6(nc5(c(ncn([C@@H]4(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP([O-])(=O)OC[C@H]3(O[C@@H](n1(cnc2(c1nc(N)[nH]c(=O)2)))[C@H](O)[C@H](OP([O-])(=O)O[a transfer RNA])3))[C@@H](O)4))5)c(=O)[nH]6))" +"tRNA-Containing-N2-dimethylguanine-10" "an N2-dimethylguanine10 in tRNA" [] null null -2 "CN(C)c1(nc2(n(cnc(c(=O)[nH]1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))" +"tRNA-Containing-N2-dimethylguanine-26" "an N2dimethylguanine26 in tRNA" [] null null -2 "CN(C)c1(nc2(n(cnc(c(=O)[nH]1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))" +"tRNA-Containing-N2-Dimethylguanines" "an N2 dimethylguanine in tRNA" ["a tRNA containing N2 dimethylguanine"] null null -2 "CN(C)c1(nc2(n(cnc(c(=O)[nH]1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))" +"tRNA-Containing-N2-Methylgua-26-Gua27" "an N2-methylguanine26/guanine27 in tRNA" [] null null -3 "CNc6(nc5(c(ncn([C@@H]4(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP([O-])(=O)OC[C@H]3(O[C@@H](n1(cnc2(c1nc(N)[nH]c(=O)2)))[C@H](O)[C@H](OP([O-])(=O)O[a transfer RNA])3))[C@@H](O)4))5)c(=O)[nH]6))" +"tRNA-Containing-N2-Methylguanine" "an N2-methylguanine in tRNA" ["a tRNA containing N2-methylguanine"] null null -2 "CNc1(nc2(n(cnc(c(=O)[nH]1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))" +"tRNA-Containing-N2-Methylguanine-10" "an N2-methylguanine10 in tRNA" [] null null -2 "CNc1(nc2(n(cnc(c(=O)[nH]1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))" +"tRNA-Containing-N2-Methylguanine-26" "an N2-methylguanine26 in tRNA" [] null null -2 "CNc1(nc2(n(cnc(c(=O)[nH]1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))" +"tRNA-Containing-N2-Methylguanine-6" "an N2-methylguanine6 in tRNA" [] null null -2 "CNc1(nc2(n(cnc(c(=O)[nH]1)2)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))" +"tRNA-Containing-N7-Methylguanine-46" "an N7-methylguanine46 in tRNA" [] null null -1 "C[n+]1(c3(c(=O)[nH]c(N)nc(n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))3))" +"tRNA-Cytosines" "a cytosine in tRNA" ["a tRNA cytosine"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(c(nc(cc1)N)=O))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"tRNA-Dihydrouridines" "a 5,6-dihydrouridine in tRNA" ["a tRNA containing 5,6-dihydrouridine"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](N1(CCC(=O)NC(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"tRNA-Epoxyqueuosines" "a tRNA epoxyqueuosine" [] null null -2 "C(NC2([C@@H](O)[C@@H](O)[C@@H]1(O[C@@H]12)))c4(cn([C@@H]3(O[C@H](COP(O[a transfer RNA])(=O)[O-])[C@@H](OP([O-])(=O)O[a transfer RNA])[C@@H](O)3))c5(c4c(=O)[nH]c(N)n5))" +"tRNA-Guanines" "a guanine in tRNA" ["a tRNA containing guanine", "a tRNA guanine"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" +"tRNA-guanosine18" "a guanosine18 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" +"tRNA-Guanosines" "a guanosine in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]c(N)n2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" "tRNA-Holder" "a tRNA" [] null null -3 "C(OP(=O)([O-])O[a ribonucleic acid])[C@H]2(O[C@@H]([a nucleobase])[C@H](O)[C@H](OP(OC[C@H]1(O[C@@H]([a nucleobase])[C@H](O)[C@H](OP(=O)(O[a ribonucleic acid])[O-])1))(=O)[O-])2)" -"tRNA-Inosines" "an inosine in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]cn2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" -"tRNA-N1-methylpseudouridine-54" "an N1-methylpseudouridine54 in tRNA" ["a tRNA containing N1-methylpseudouridine at position 54", "a tRNA N1-methylpseudouridine54"] null null -2 "Cn1(c(=O)[nH]c(=O)c(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-PreQ0" "preQ0 at position 15 of an archaeal tRNA" ["7-cyano-7-deazaguanine at position 15 in archaeal tRNA", "7-cyano-7-carbaguanine at position 15 in archaeal tRNA", "preQ0 at position 15 in archaeal tRNA", "7-cyano-7-carbaguanine15 in archaeal tRNA", "7-cyano-7-deazaguanine15 in archaeal tRNA", "preQ015 in archaeal tRNA"] null null -2 "C(#N)c1(c3(c(=O)[nH]c(N)nc(n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))3))" -"tRNA-pseudouridine-31" "a pseudouridine31 in tRNA" ["a tRNA pseudouridine31"] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-pseudouridine-38-39" "a pseudouridine38/39 in tRNA" ["a tRNA pseudouridine38/39"] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-pseudouridine-38-40" "a pseudouridine38-40 in tRNA" ["a tRNA pseudouridine38-40"] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-pseudouridine-54" "a pseudouridine54 in tRNA" ["a tRNA containing pseudouridine at position 54", "a tRNA pseudouridine54"] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-pseudouridine13" "a pseudouridine13 in tRNA" ["a tRNA pseudouridine13"] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-pseudouridine32" "a pseudouridine32 in tRNA" ["a tRNA pseudouridine32"] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-pseudouridine35" "a pseudouridine35 in tRNA" [] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-pseudouridine55" "a pseudouridine55 in tRNA" [] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-pseudouridine65" "a pseudouridine65 in tRNA" [] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-Pseudouridines" "a pseudouridine in tRNA" ["a tRNA pseudouridine"] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" +"tRNA-Inosines" "an inosine in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]cn2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" +"tRNA-N1-methylpseudouridine-54" "an N1-methylpseudouridine54 in tRNA" ["a tRNA containing N1-methylpseudouridine at position 54", "a tRNA N1-methylpseudouridine54"] null null -2 "Cn1(c(=O)[nH]c(=O)c(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"tRNA-PreQ0" "preQ0 at position 15 of an archaeal tRNA" ["7-cyano-7-deazaguanine at position 15 in archaeal tRNA", "7-cyano-7-carbaguanine at position 15 in archaeal tRNA", "preQ0 at position 15 in archaeal tRNA", "7-cyano-7-carbaguanine15 in archaeal tRNA", "7-cyano-7-deazaguanine15 in archaeal tRNA", "preQ015 in archaeal tRNA"] null null -2 "C(#N)c1(c3(c(=O)[nH]c(N)nc(n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))3))" +"tRNA-pseudouridine-31" "a pseudouridine31 in tRNA" ["a tRNA pseudouridine31"] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"tRNA-pseudouridine-38-39" "a pseudouridine38/39 in tRNA" ["a tRNA pseudouridine38/39"] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"tRNA-pseudouridine-38-40" "a pseudouridine38-40 in tRNA" ["a tRNA pseudouridine38-40"] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"tRNA-pseudouridine-54" "a pseudouridine54 in tRNA" ["a tRNA containing pseudouridine at position 54", "a tRNA pseudouridine54"] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"tRNA-pseudouridine13" "a pseudouridine13 in tRNA" ["a tRNA pseudouridine13"] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"tRNA-pseudouridine32" "a pseudouridine32 in tRNA" ["a tRNA pseudouridine32"] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"tRNA-pseudouridine35" "a pseudouridine35 in tRNA" [] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"tRNA-pseudouridine55" "a pseudouridine55 in tRNA" [] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"tRNA-pseudouridine65" "a pseudouridine65 in tRNA" [] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"tRNA-Pseudouridines" "a pseudouridine in tRNA" ["a tRNA pseudouridine"] null null -2 "c1(c(c(=O)[nH]c(=O)[nH]1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" "tRNA-Queuines" "a tRNA queuine" [] null null 0 null -"tRNA-Ribothymidines" "a ribothymidine in tRNA" ["a tRNA ribothymidine"] null null -2 "Cc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-uridine-38-39" "a uridine38/39 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"tRNA-uridine-38-40" "a uridine38-40 in tRNA" ["a tRNA uridine38-40"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"tRNA-uridine13" "a uridine13 in tRNA" ["a tRNA uridine13"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"tRNA-uridine34" "a uridine34 in tRNA" ["a tRNA uridine34"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"tRNA-uridine35" "a uridine35 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"tRNA-uridine55" "a uridine55 in tRNA" ["a tRNA uridine55"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"tRNA-uridine65" "a uridine65 in tRNA" ["a tRNA uridine65"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"tRNA-uridines" "a uridine in tRNA" ["a tRNA containing uridine", "a tRNA uridine"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"tRNA-with-5-taurinomethyl-2-thiouridine" "a 5-taurinomethyl-2-thiouridine in tRNA" ["a tRNA containing 5-taurinomethyl-2-thiouridine"] null null -3 "C(S(=O)(=O)[O-])CCNC1(\C(=O)NC(=S)N(/C=1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))" -"tRNA-with-7-aminomethyl-7-deazaguanine" "a 7-aminomethyl-7-deazaguanosine34 in tRNA" ["a 7-aminomethyl-7-deazaguanine at position 34 of a tRNA containing GUN anticodon"] null null -1 "C([NH3+])c1(c3(c(=O)[nH]c(N)nc(n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))3))" -"tRNA-with-uridine-54" "a uridine54 in tRNA" ["a tRNA containing uridine at position 54", "a tRNA uridine54"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" +"tRNA-Ribothymidines" "a ribothymidine in tRNA" ["a tRNA ribothymidine"] null null -2 "Cc1(c(=O)[nH]c(=O)n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"tRNA-uridine-38-39" "a uridine38/39 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"tRNA-uridine-38-40" "a uridine38-40 in tRNA" ["a tRNA uridine38-40"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"tRNA-uridine13" "a uridine13 in tRNA" ["a tRNA uridine13"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"tRNA-uridine34" "a uridine34 in tRNA" ["a tRNA uridine34"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"tRNA-uridine35" "a uridine35 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"tRNA-uridine55" "a uridine55 in tRNA" ["a tRNA uridine55"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"tRNA-uridine65" "a uridine65 in tRNA" ["a tRNA uridine65"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"tRNA-uridines" "a uridine in tRNA" ["a tRNA containing uridine", "a tRNA uridine"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"tRNA-with-5-taurinomethyl-2-thiouridine" "a 5-taurinomethyl-2-thiouridine in tRNA" ["a tRNA containing 5-taurinomethyl-2-thiouridine"] null null -3 "C(S(=O)(=O)[O-])CCNC1(\C(=O)NC(=S)N(/C=1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))" +"tRNA-with-7-aminomethyl-7-deazaguanine" "a 7-aminomethyl-7-deazaguanosine34 in tRNA" ["a 7-aminomethyl-7-deazaguanine at position 34 of a tRNA containing GUN anticodon"] null null -1 "C([NH3+])c1(c3(c(=O)[nH]c(N)nc(n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))3))" +"tRNA-with-uridine-54" "a uridine54 in tRNA" ["a tRNA containing uridine at position 54", "a tRNA uridine54"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" "tRNAPhe-Containing-4-demethylwyosine-37" "4-demethylwyosine37 in tRNAPhe" ["imG-1437 in tRNAPhe"] null null -2 "Cc1(nc3(n(c1)c(=O)c2(ncn(c2[nH]3)[C@@H]4(O[C@H](COP(=O)([O-])O[a tRNAPhe])[C@@H](OP(=O)(O[a tRNAPhe])[O-])[C@@H](O)4))))" "tRNAPhe-Containing-isowyosine-37" "isowyosine37 in tRNAPhe" ["imG237 in tRNAPhe"] null null -2 "Cc1(nc3(n(c(C)1)c(=O)c2(ncn(c2[nH]3)[C@@H]4(O[C@H](COP(=O)([O-])O[a tRNAPhe])[C@@H](OP(=O)(O[a tRNAPhe])[O-])[C@@H](O)4))))" "tRNAPhe-Containing-methylwyosine-37" "7-methylwyosine37 in tRNAPhe" ["mimG37 in tRNAPhe"] null null -2 "Cc1(nc3(n(c(C)1)c(=O)c2(ncn(c2n(C)3)[C@@H]4(O[C@H](COP(=O)([O-])O[a tRNAPhe])[C@@H](OP(=O)(O[a tRNAPhe])[O-])[C@@H](O)4))))" @@ -7391,15 +7393,15 @@ "tRNAPhe-Containing-wyosine-37" "wyosine37 in tRNAPhe" ["imG37 in tRNAPhe"] null null -2 "Cc1(nc4(n(c1)c(=O)c3(ncn([C@@H]2(O[C@H](COP(O[a tRNAPhe])(=O)[O-])[C@@H](OP([O-])(=O)O[a tRNAPhe])[C@@H](O)2))c3n(C)4)))" "tRNAPhe-wybutosine" "wybutosine37 in tRNAPhe" [] null null -2 "Cc1(nc3(n(c(CC[C@H](NC(=O)OC)C(=O)OC)1)c(=O)c2(ncn(c2n(C)3)[C@@H]4(O[C@H](COP(=O)([O-])O[a tRNAPhe])[C@@H](OP(=O)(O[a tRNAPhe])[O-])[C@@H](O)4))))" "tRNAs-Asp-with-queuosine" "queuosine34 in tRNAAsp" ["a tRNAAsp-queuosine", "queuosine at position 34 of a tRNAAsp"] null null -1 "C([NH2+]C1(\C=C/[C@H](O)[C@H](O)1))c2(c4(c(=O)[nH]c(N)nc(n(c2)[C@@H]3(O[C@H](COP(=O)([O-])O[tRNAasp])[C@@H](OP(=O)(O[tRNAasp])[O-])[C@@H](O)3))4))" -"tRNAs-containing-epoxy-quenosine" "an epoxyqueuosine34 in tRNA" ["an epoxyqueuosine at position 34 of a tRNA containing GUN anticodon"] null null -1 "C([NH2+]C1([C@H]2(O[C@@H]([C@H](O)[C@H](O)1)2)))c3(c5(c(=O)[nH]c(N)nc(n(c3)[C@@H]4(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)4))5))" -"tRNAs-Containing-N6-Methyladenine" "an N6-methyladenine in tRNA" ["a tRNA containing N6-methyladenine"] null null -2 "CNc1(ncnc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3)))" -"tRNAs-Hypoxanthines" "a hypoxanthine in tRNA" ["a tRNA hypoxanthine"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]cn2)))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])3)" -"tRNAs-with-cytidines" "a cytidine in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(N)nc(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" +"tRNAs-containing-epoxy-quenosine" "an epoxyqueuosine34 in tRNA" ["an epoxyqueuosine at position 34 of a tRNA containing GUN anticodon"] null null -1 "C([NH2+]C1([C@H]2(O[C@@H]([C@H](O)[C@H](O)1)2)))c3(c5(c(=O)[nH]c(N)nc(n(c3)[C@@H]4(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)4))5))" +"tRNAs-Containing-N6-Methyladenine" "an N6-methyladenine in tRNA" ["a tRNA containing N6-methyladenine"] null null -2 "CNc1(ncnc2(n(cnc12)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3)))" +"tRNAs-Hypoxanthines" "a hypoxanthine in tRNA" ["a tRNA hypoxanthine"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]3(O[C@@H](n1(c2(c(nc1)c(=O)[nH]cn2)))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])3)" +"tRNAs-with-cytidines" "a cytidine in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(N)nc(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" "tRNAs-with-glutamylated-queuosine" "glutamyl-queuosine34 in tRNAAsp" ["a tRNA containing glutamylated queuosine", "glutamylated queuosine at position 34 of a tRNAAsp", "glutamyl-queuosine at position 34 of a tRNAAsp"] null null -3 "C([NH2+]C1(\C=C/[C@H](N[C@@H](CCC([O-])=O)C([O-])=O)[C@H](O)1))c2(c4(c(=O)[nH]c(N)nc(n(c2)[C@@H]3(O[C@H](COP(=O)([O-])O[tRNAasp])[C@@H](OP(=O)(O[tRNAasp])[O-])[C@@H](O)3))4))" -"TRNAS-WITH-N3-METHYLCYTOSINE" "an N3-methylcytosine in tRNA" [] null null -1 "C[n+]1(c(ccn(c1=O)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))N)" -"tRNAs-with-N7-methyl-guanine" "an N7-methylguanine in tRNA" ["a tRNA containing N7-methylguanine"] null null -1 "C[n+]1(c3(c(=O)[nH]c(N)nc(n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)2))3))" +"TRNAS-WITH-N3-METHYLCYTOSINE" "an N3-methylcytosine in tRNA" [] null null -1 "C[n+]1(c(ccn(c1=O)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))N)" +"tRNAs-with-N7-methyl-guanine" "an N7-methylguanine in tRNA" ["a tRNA containing N7-methylguanine"] null null -1 "C[n+]1(c3(c(=O)[nH]c(N)nc(n(c1)[C@@H]2(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)2))3))" "tRNAs-with-O-methyl-C-or-U" "a tRNA containing 2'-O-methylcytosine or 2'-O-methyluridine" [] null null 0 null -"tRNAs-with-queuine" "a queuosine34 in tRNA" ["a tRNA containing queuosine", "queuosine at position 34 of a tRNA"] null null -1 "C([NH2+]C1(\C=C/[C@H](O)[C@H](O)1))c2(c4(c(=O)[nH]c(N)nc(n(c2)[C@@H]3(O[C@H](COP(=O)([O-])O[a tRNA])[C@@H](OP(=O)(O[a tRNA])[O-])[C@@H](O)3))4))" +"tRNAs-with-queuine" "a queuosine34 in tRNA" ["a tRNA containing queuosine", "queuosine at position 34 of a tRNA"] null null -1 "C([NH2+]C1(\C=C/[C@H](O)[C@H](O)1))c2(c4(c(=O)[nH]c(N)nc(n(c2)[C@@H]3(O[C@H](COP(=O)([O-])O[a transfer RNA])[C@@H](OP(=O)(O[a transfer RNA])[O-])[C@@H](O)3))4))" "TRP" "L-tryptophan" ["W", "tryptacin", "trofan", "tryptophan", "2-amino-3-indolylpropanic acid", "L-trp", "trp"] "C11H12N2O2" 204.228 0 "c2([nH]c1(ccccc1c(C[C@H]([NH3+])C(=O)[O-])2))" "Truncated-Limit-Dextrins" "a α-limit dextrin with short branches" [] null null 0 "C([C@H]%12(O[C@H](OC[C@H]1(O[C@@H]([C@@H]([C@@H](O)[C@@H]1O[C@H]2(O[C@@H]([C@H]([C@@H]([C@H]2O)O)O[R1])CO))O)O[C@@H]3([C@H](O[C@@H]([C@@H]([C@@H](O)3)O)O[C@@H]4([C@H](O[C@@H]([C@@H]([C@@H](O)4)O)O[C@@H]5([C@H](O[C@@H]([C@@H]([C@@H](O)5)O)O[C@@H]6([C@H](O[C@@H]([C@@H]([C@@H](O)6)O)O[C@@H]%11([C@H](O[C@H](O[C@@H]%10([C@H](O[C@H](O[C@@H]8([C@H](O[C@H](O[C@@H]7([C@H](OC(O[R2])[C@@H]([C@H]7O)O)CO))[C@@H]([C@H]8O)O)CO[C@H]9(O[C@@H]([C@@H](O)[C@@H]([C@H]9O)O)CO)))[C@@H]([C@H]%10O)O)CO))[C@@H]([C@@H](O)%11)O)CO))CO))CO))CO))CO)))[C@@H]([C@@H](O)[C@@H]%12O)O))O" "TTP" "dTTP" ["thymidine triphosphate", "thymidine 5'-triphosphate", "TTP"] "C10H13N2O14P3" 478.139 -4 "Cc1(cn(c(=O)[nH]c(=O)1)[C@H]2(C[C@H](O)[C@@H](COP(=O)([O-])OP(=O)([O-])OP(=O)([O-])[O-])O2))" @@ -7485,19 +7487,19 @@ "Unstable-RecA-Filament-DNA-Complex" "an unstable RecA filament-DNA complex" [] null null 0 null "Upper-case-I-antigens" "an I antigen" ["an N-acetyl-β-D-galactosyl-1,4-[β-D-galactosyl-1,4-N-acetyl-β-D-glucosyl-1,6]-N-acetyl-β-D-glucosaminyl-1,3-β-D-galactosyl-1,4-N-acetyl-D-glucosaminyl-[glycoprotein]", "an N-acetyl-β-D-galactosyl-(1,4)-[β-D-galactosyl-(1,4)-N-acetyl-β-D-glucosyl-(1,6)]-N-acetyl-β-D-glucosaminyl-(1,3)-β-D-galactosyl-(1,4)-N-acetyl-β-D-glucosaminyl-R", "an I histo-blood group antigen", "a β-D-Gal-(1→4)-β-D-GlcNAc-(1→3)-[β-D-Gal-(11→4)-β-D-GlcNAc-(1->6)]-β-D-Gal-(1→4)-β-D-GlcNAc-R"] null null 0 "CC(=O)N[C@H]6([C@H](O[R])O[C@H](CO)[C@@H](O[C@@H]5(O[C@H](CO[C@@H]2(O[C@H](CO)[C@@H](O[C@@H]1(O[C@H](CO)[C@H](O)[C@H](O)[C@@H](O)1))[C@H](O)[C@@H](NC(C)=O)2))[C@H](O)[C@H](O[C@@H]4(O[C@H](CO)[C@@H](O[C@@H]3(O[C@H](CO)[C@H](O)[C@H](O)[C@@H](O)3))[C@H](O)[C@@H](NC(C)=O)4))[C@@H](O)5))[C@H](O)6)" "URACIL" "uracil" ["U", "2,4-(1H,3H)-pyrimidinedione"] "C4H4N2O2" 112.088 0 "c1(cc([nH]c(=O)[nH]1)=O)" -"Uracil-54-in-tRNA" "a uracil54 in tRNA" ["a tRNA containing uracil at position 54", "a tRNA uracil54"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" +"Uracil-54-in-tRNA" "a uracil54 in tRNA" ["a tRNA containing uracil at position 54", "a tRNA uracil54"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" "Uracil-6666-apolipoprotein-B-mRNAs" "a uracil6666 in apolipoprotein B mRNA" [] null null -2 "C(OP(=O)([O-])O[an apolipoprotein B mRNA])[C@H]2(O[C@@H](n1(c([nH]c(cc1)=O)=O))[C@H](O)[C@H](OP(=O)(O[an apolipoprotein B mRNA])[O-])2)" -"Uracil-8-In-tRNAs" "a uracil8 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" +"Uracil-8-In-tRNAs" "a uracil8 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" "Uracil-Analogues" "a uracil analogue" [] null null 0 null "Uracil-In-Single-Stranded-DNAs" "a uracil in single-stranded DNA" [] null null -2 "C(OP(=O)([O-])O[a single stranded DNA])[C@H]2(O[C@@H](n1(c([nH]c(cc1)=O)=O))[C@H](O)[C@H](OP(=O)(O[a single stranded DNA])[O-])2)" "Uracil-Nucleotides" "a uracil nucleotide" [] null null 0 null -"Uracil-tRNAs" "a uracil in tRNA" ["tRNA containing uracil"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"Uracil16-in-tRNAs" "a uracil16 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"Uracil17-in-tRNAs" "a uracil17 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"Uracil20-in-tRNAs" "a uracil20 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"Uracil20a-in-tRNAs" "a uracil20a in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"Uracil20b-in-tRNAs" "a uracil20b in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"Uracil47-in-tRNAs" "a uracil47 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" +"Uracil-tRNAs" "a uracil in tRNA" ["tRNA containing uracil"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"Uracil16-in-tRNAs" "a uracil16 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"Uracil17-in-tRNAs" "a uracil17 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"Uracil20-in-tRNAs" "a uracil20 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"Uracil20a-in-tRNAs" "a uracil20a in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"Uracil20b-in-tRNAs" "a uracil20b in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"Uracil47-in-tRNAs" "a uracil47 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" "URATE" "urate" ["2,6,8-trioxypurine", "purine-2,6,8-(1H,3H,9H)-trione", "7,9-dihydro-1H-purine-2,6,8(3H)-trione"] "C5H4N4O3" 168.112 0 "c12([nH]c(=O)[nH]c1c(=O)[nH]c(=O)[nH]2)" "UREA" "urea" ["bromisovalum", "carmol", "basodexan", "carbamide"] "CH4N2O" 60.055 0 "C(=O)(N)N" "Ureido-Compounds" "a ureido compound" ["a (carbamoylamino) compound"] null null 0 null @@ -7505,8 +7507,8 @@ "URIDINE" "uridine" [] "C9H12N2O6" 244.204 0 "C(O)[C@@H]2([C@H]([C@H]([C@H](n1(ccc(=O)[nH]c1=O))O2)O)O)" "Uridine-Nucleotides" "a uridine nucleotide" [] null null 0 null "Uridine2479-in-23S-rRNA" "a uridine2479 in 23S rRNA" [] null null -2 "C(OP(=O)([O-])O[a 23S rRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a 23S rRNA])[O-])2)" -"Uridine31-in-tRNA" "a uridine31 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" -"Uridine32-in-tRNA" "a uridine32 in tRNA" ["a tRNA uridine32"] null null -2 "C(OP(=O)([O-])O[a tRNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNA])[O-])2)" +"Uridine31-in-tRNA" "a uridine31 in tRNA" [] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" +"Uridine32-in-tRNA" "a uridine32 in tRNA" ["a tRNA uridine32"] null null -2 "C(OP(=O)([O-])O[a transfer RNA])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a transfer RNA])[O-])2)" "Uridine44-in-tRNA-Ser" "a uridine44 in tRNAser" [] null null -2 "C(OP(=O)([O-])O[a tRNAser])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNAser])[O-])2)" "Uridine47-in-tRNAPhe" "a uridine47 in tRNAPhe" [] null null -2 "C(OP(=O)([O-])O[a tRNAPhe])[C@H]2(O[C@@H](n1(ccc(=O)[nH]c(=O)1))[C@H](O)[C@H](OP(=O)(O[a tRNAPhe])[O-])2)" "Uronate-Phosphate" "a uronate phosphate" ["a uronic acid phosphate"] null null 0 null @@ -7539,8 +7541,8 @@ "Very-Long-Chain-oxoacyl-CoAs" "a very-long-chain 3-oxoacyl-CoA" [] null null -4 "C(CCCCCCCCCCCCCCCCCCCC(=O)CC(SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(=O)(OP(=O)(OC[C@H]1(O[C@H]([C@@H]([C@@H]1OP([O-])(=O)[O-])O)n3(c2(c(c(N)ncn2)nc3))))[O-])[O-])=O)[R]" "Very-Long-Chain-Trans-23-Dehydroacyl-CoA" "a very-long-chain (2E)-2-enoyl-CoA" ["a very-long-chain trans-2,3-didehydroacyl-CoA", "a very-long-chain trans-2-enoyl-CoA", "a very-long-chain trans-Δ2-enoyl-CoA", "a very-long-chain trans-didehydroacyl-CoA", "a very-long-chain trans-2,3-dehydroacyl-CoA"] null null -4 "C(CCCCCCCCCCCCCCCCCCC/C=C/C(SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(=O)(OP(=O)(OC[C@H]1(O[C@H]([C@@H]([C@@H]1OP([O-])(=O)[O-])O)n3(c2(c(c(N)ncn2)nc3))))[O-])[O-])=O)[R]" "VIM-2" "a VIM-2 epitope" ["αNeuNAc-(2→3)-βGal-(1→4)-βGlcNAc-(1→3)-βGal-(1→4)-[αFuc-(1→3)-βGlcNAc]-R", "NeuNAca2→3Galβl→4GlcNAcβ1→3Galβl→4[Fuca(l→3)GlcNAc]-R"] null null -1 "C[C@@H]6(O[C@@H](O[C@@H]5([C@@H](NC(C)=O)[C@@H](O[C@H](CO)[C@@H](O[C@H]4([C@H](O)[C@@H](O[C@@H]3(O[C@H](CO)[C@@H](O[C@@H]2(O[C@H](CO)[C@H](O)[C@H](O[C@@]1(C(=O)[O-])(C[C@H](O)[C@@H](NC(C)=O)[C@@H](O1)[C@H](O)[C@H](O)CO))[C@@H](O)2))[C@H](O)[C@@H](NC(C)=O)3))[C@@H](O)[C@@H](CO)O4))5)O[R]))[C@H]([C@@H]([C@@H]6O)O)O)" -"Vitamin-A" "vitamin A" [] null null 0 null -"Vitamin-E" "vitamin E" ["a tocochromenol"] null null 0 "C[C@@]1(Oc2(c(CC1)c(c(c(c2[R2])[R3])O)[R1]))C[R4]" +"Vitamin-A" "an A vitamin" ["a vitamin A"] null null 0 null +"Vitamin-E" "an E vitamin" ["a tocochromenol", "a vitamin E"] null null 0 "C[C@@]1(Oc2(c(CC1)c(c(c(c2[R2])[R3])O)[R1]))C[R4]" "Vitamins" "a vitamin" [] null null 0 null "Vitamins-B6" "a vitamin B6" [] null null 0 null "VLC-alcohol-LC-acyl-ester" "a very-long-chain alcohol--long-chain acyl wax ester" [] null null 0 "C(CCCCCCCCCCCCCCCCCCCCCCOC(=O)CCCCCCCCCCCC[R2])[R]" diff --git a/reconstruction/ecoli/flat/proteins.tsv b/reconstruction/ecoli/flat/proteins.tsv index 2e6a4f30e..742847469 100644 --- a/reconstruction/ecoli/flat/proteins.tsv +++ b/reconstruction/ecoli/flat/proteins.tsv @@ -1,27 +1,27 @@ # Organism: Escherichia coli K-12 substr. MG1655 # Database: EcoCyc -# Version: 28.1 -# Date and time generated: March 7, 2024, 13:56:38 +# Version: 28.5 +# Date and time generated: July 19, 2024, 9:41:37 "id" "common_name" "synonyms" "seq" "experimental_compartment" "computational_compartment" "cleavage_of_initial_methionine" "selenocysteine_at_opal" "protein_feature_cofactors" "in_complex" "1-ACYLGLYCEROL-3-P-ACYLTRANSFER-MONOMER" "1-acylglycerol-3-phosphate O-acyltransferase PlsC" ["ParF", "PlsC"] "MLYIFRLIITVIYSILVCVFGSIYCLFSPRNPKHVATFGHMFGRLAPLFGLKVECRKPTDAESYGNAIYIANHQNNYDMVTASNIVQPPTVTVGKKSLLWIPFFGQLYWLTGNLLIDRNNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGRGLLPFKTGAFHAAIAAGVPIIPVCVSTTSNKINLNRLHNGLVIVEMLPPIDVSQYGKDQVRELAAHCRSIMEQKIAELDKEVAEREAAGKV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "1-PFK-MONOMER" "1-phosphofructokinase" ["Fpk", "FruK"] "MSRRVATITLNPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGGFLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGEVTDFNFSGFEVTPADWERFVTDSLSWLGQFDMVCVSGSLPSGVSPEAFTDWMTRLRSQCPCIIFDSSREALVAGLKAAPWLVKPNRRELEIWAGRKLPEMKDVIEAAHALREQGIAHVVISLGAEGALWVNASGEWIAKPPSVDVVSTVGAGDSMVGGLIYGLLMRESSEHTLRLATAVAALAVSQSNVGITDRPQLAAMMARVDLQPFN" [] ["CCO-CYTOSOL"] 0 [] {} 1 "2-DEHYDROPANTOATE-REDUCT-MONOMER" "2-dehydropantoate 2-reductase" ["PanE", "ApbA"] "MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAENISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVPENTRLFEMVKRKESEYERIGTGLPRPW" [] ["CCO-CYTOSOL"] 0 [] {} 0 "2-ISOPROPYLMALATESYN-MONOMER" "2-isopropylmalate synthase" ["LeuA"] "MSQQVIIFDTTLRDGEQALQASLSVKEKLQIALALERMGVDVMEVGFPVSSPGDFESVQTIARQVKNSRVCALARCVEKDIDVAAESLKVAEAFRIHTFIATSPMHIATKLRSTLDEVIERAIYMVKRARNYTDDVEFSCEDAGRTPIADLARVVEAAINAGATTINIPDTVGYTMPFEFAGIISGLYERVPNIDKAIISVHTHDDLGLAVGNSLAAVHAGARQVEGAMNGIGERAGNCSLEEVIMAIKVRKDILNVHTAINHQEIWRTSQLVSQICNMPIPANKAIVGSGAFAHSSGIHQDGVLKNRENYEIMTPESIGLNQIQLNLTSRSGRAAVKHRMDEMGYKESEYNLDNLYDAFLKLADKKGQVFDYDLEALAFIGKQQEEPEHFRLDYFSVQSGSNDIATAAVKLACGEEVKAEAANGNGPVDAVYQAINRITEYNVELVKYSLTAKGHGKDALGQVDIVANYNGRRFHGVGLATDIVESSAKAMVHVLNNIWRAAEVEKELQRKAQHNENNKETV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "2-OCTAPRENYL-METHOXY-BENZOQ-METH-MONOMER" "bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinol methylase and demethylmenaquinone methyltransferase" ["YigO", "UbiE", "bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinol methylase and S-adenosylmethionine:2-DMK methyltransferase", "bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase/ S-adenosylmethionine:2-DMK methyltransferase"] "MVDKSQETTHFGFQTVAKEQKADMVAHVFHSVASKYDVMNDLMSFGIHRLWKRFTIDCSGVRRGQTVLDLAGGTGDLTAKFSRLVGETGKVVLADINESMLKMGREKLRNIGVIGNVEYVQANAEALPFPDNTFDCITISFGLRNVTDKDKALRSMYRVLKPGGRLLVLEFSKPIIEPLSKAYDAYSFHVLPRIGSLVANDADSYRYLAESIRMHPDQDTLKAMMQDAGFESVDYYNLTAGVVALHRGYKF" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"2-OCTAPRENYLPHENOL-HYDROX-MONOMER" "ubiquinone biosynthesis protein UbiB" ["YigQ", "YigS", "AarF", "YigR", "UbiB", "putative protein kinase involved in ubiquinone biosynthesis"] "MTPGEVRRLYFIIRTFLSYGLDELIPKMRITLPLRLWRYSLFWMPNRHKDKLLGERLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLARWVPRLLPDGRRLRPTEVVREYEKTLIDELNLLRESANAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLESWIKDQVGIPALVRAFKEKAPFWVEKMPELPELVYDSLRQGKYLQHSVDKIARELQSNHVRQGQSRYFLGIGATLVLSGTFLLVSRPEWGLMPGWLMAGGLIAWFVGWRKTR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"2-OCTAPRENYLPHENOL-HYDROX-MONOMER" "ubiquinone biosynthesis protein UbiB" ["YigQ", "YigS", "AarF", "YigR", "UbiB", "putative protein kinase involved in ubiquinone biosynthesis"] "MTPGEVRRLYFIIRTFLSYGLDELIPKMRITLPLRLWRYSLFWMPNRHKDKLLGERLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLARWVPRLLPDGRRLRPTEVVREYEKTLIDELNLLRESANAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLESWIKDQVGIPALVRAFKEKAPFWVEKMPELPELVYDSLRQGKYLQHSVDKIARELQSNHVRQGQSRYFLGIGATLVLSGTFLLVSRPEWGLMPGWLMAGGLIAWFVGWRKTR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-MONOMER" "3-methyl-2-oxobutanoate hydroxymethyltransferase" ["PanB"] "MKPTTISLLQKYKQEKKRFATITAYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAATVMRAGANMVKIEGGEWLVETVQMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGDQLLSDALALEAAGAQLLVLECVPVELAKRITEALAIPVIGIGAGNVTDGQILVMHDAFGITGGHIPKFAKNFLAETGDIRAAVRQYMAEVESGVYPGEEHSFH" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "3-ISOPROPYLMALDEHYDROG-MONOMER" "3-isopropylmalate dehydrogenase" ["LeuB"] "MSKNYHIAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYDVGGAAIDNHGQPLPPATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFDTEVYHRFEIERIARIAFESARKRRHKVTSIDKANVLQSSILWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDADDAACAIERAINRALEEGIRTGDLARGAAAVSTDEMGDIIARYVAEGV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MG+2": 1} 1 "3-OXOACYL-ACP-REDUCT-MONOMER" "3-oxoacyl-[acyl-carrier-protein] reductase FabG" ["FabG", "3-oxoacyl-[acyl-carrier-protein] reductase subunit"] "MNFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGGAQEIANAVAFLASDEAAYITGETLHVNGGMYMV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"CA+2": 3} 1 "3-OXOACYL-ACP-SYNTHII-MONOMER" "3-oxoacyl-[acyl carrier protein] synthase 2" ["Vtr", "Cvc", "VtrB", "FabJ", "FabF", "β-ketoacyl-ACP synthase II", "β-ketoacyl-[acyl carrier protein] synthase II"] "MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIFKKI" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "4OHBENZOATE-OCTAPRENYLTRANSFER-MONOMER" null ["Cyr", "UbiA"] "MEWSLTQNKLLAFHRLMRTDKPIGALLLLWPTLWALWVATPGVPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARALFVVLVLISFLLVLTLNTMTILLSIAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESVPLSCWLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQYDKLIIGILQIGVLALMAIIGELNGLGWGYYWSILVAGALFVYQQKLIANREREACFKAFMNNNYVGLVLFLGLAMSYWHF" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"6PFK-1-MONOMER" "6-phosphofructokinase 1" ["PfkA", "6-phosphofructokinase I"] "MIKKIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQRISVVEVMGRYCGDLTLAAAIAGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAIVAITEHMCDVDELAHFIEKETGRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCVGIQNEQLVHHDIIDAIENMKRPFKGDWLDCAKKLY" ["CCO-CYTOSOL"] ["CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 +"6PFK-1-MONOMER" "6-phosphofructokinase 1" ["PfkA", "6-phosphofructokinase I"] "MIKKIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQRISVVEVMGRYCGDLTLAAAIAGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAIVAITEHMCDVDELAHFIEKETGRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCVGIQNEQLVHHDIIDAIENMKRPFKGDWLDCAKKLY" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "6PFK-2-MONOMER" "6-phosphofructokinase 2" ["PfkB", "6-phosphofructokinase II"] "MVRIYTLTLAPSLDSATITPQIYPEGKLRCTAPVFEPGGGGINVARAIAHLGGSATAIFPAGGATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGEQYRFVMPGAALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAAQKQGIRCIVDSSGEALSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMVRFGVAAGSAATLNQGTRLCSHDDTQKIYAYLSR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"K+": 1, "MG+2": 1} 1 "6PGLUCONDEHYDROG-MONOMER" "6-phosphogluconate dehydrogenase, decarboxylating" ["Gnd"] "MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "6PGLUCONOLACT-MONOMER" null ["Pgl", "YbhE"] "MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "7-ALPHA-HYDROXYSTEROID-DEH-MONOMER" "7-α-hydroxysteroid dehydrogenase" ["HdhA", "Hsd", "HsdH"] "MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGGGVQELN" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "7KAPSYN-MONOMER" "8-amino-7-oxononanoate synthase" ["BioF"] "MSWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG" [] ["CCO-CYTOSOL"] 1 [] {} 1 "AAS-MONOMER" "fused 2-acylglycerophospho-ethanolamine acyltransferase/acyl-acyl carrier protein synthetase" ["Aas", "acyltransferase"] "MLFSFFRNLCRVLYRVRVTGDTQALKGERVLITPNHVSFIDGILLGLFLPVRPVFAVYTSISQQWYMRWLKSFIDFVPLDPTQPMAIKHLVRLVEQGRPVVIFPEGRITTTGSLMKIYDGAGFVAAKSGATVIPVRIEGAELTHFSRLKGLVKRRLFPQITLHILPPTQVAMPDAPRARDRRKIAGEMLHQIMMEARMAVRPRETLYESLLSAMYRFGAGKKCVEDVNFTPDSYRKLLTKTLFVGRILEKYSVEGERIGLMLPNAGISAAVIFGAIARRRMPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKADVTTADKVWIFAHLLMPRLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRSCTVLFGTSTFLGHYARFANPYDFYRLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVPGIEEGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENVRGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKVHATAIKSDASKGEALVLFTTDNELTRDKLQQYAREHGVPELAVPRDIRYLKQMPLLGSGKPDFVTLKSWVDEAEQHDE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"ABC-MONOMER" "L-methionine/D-methionine ABC transporter ATP binding subunit" ["MetD", "Abc"] "MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQERLQAEPFTDCVPMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEVLGYV" ["CCO-MEMBRANE"] ["CCO-CW-BAC-NEG", "CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"ABC-MONOMER" "L-methionine/D-methionine ABC transporter ATP binding subunit" ["MetD", "Abc"] "MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQERLQAEPFTDCVPMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEVLGYV" ["CCO-MEMBRANE"] ["CCO-CW-BAC-NEG", "CCO-PM-BAC-NEG"] 0 [] {} 1 "ABGT-MONOMER" "p-aminobenzoyl glutamate:H+ symporter" ["YdaH", "AbgT"] "MSMSSIPSSSQSGKLYGWVERIGNKVPHPFLLFIYLIIVLMVTTAILSAFGVSAKNPTDGTPVVVKNLLSVEGLHWFLPNVIKNFSGFAPLGAILALVLGAGLAERVGLLPALMVKMASHVNARYASYMVLFIAFFSHISSDAALVIMPPMGALIFLAVGRHPVAGLLAAIAGVGCGFTANLLIVTTDVLLSGISTEAAAAFNPQMHVSVIDNWYFMASSVVVLTIVGGLITDKIIEPRLGQWQGNSDEKLQTLTESQRFGLRIAGVVSLLFIAAIALMVIPQNGILRDPINHTVMPSPFIKGIVPLIILFFFVVSLAYGIATRTIRRQADLPHLMIEPMKEMAGFIVMVFPLAQFVAMFNWSNMGKFIAVGLTDILESSGLSGIPAFVGLALLSSFLCMFIASGSAIWSILAPIFVPMFMLLGFHPAFAQILFRIADSSVLPLAPVSPFVPLFLGFLQRYKPDAKLGTYYSLVLPYPLIFLVVWLLMLLAWYLVGLPIGPGIYPRLS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "ACETATEKINA-MONOMER" "acetate kinase" ["AckA", "propionate kinase 2", "acetate kinase A"] "MSSKLVLVLNCGSSSLKFAIIDAVNGEEYLSGLAECFHLPEARIKWKMDGNKQEAALGAGAAHSEALNFIVNTILAQKPELSAQLTAIGHRIVHGGEKYTSSVVIDESVIQGIKDAASFAPLHNPAHLIGIEEALKSFPQLKDKNVAVFDTAFHQTMPEESYLYALPYNLYKEHGIRRYGAHGTSHFYVTQEAAKMLNKPVEELNIITCHLGNGGSVSAIRNGKCVDTSMGLTPLEGLVMGTRSGDIDPAIIFHLHDTLGMSVDAINKLLTKESGLLGLTEVTSDCRYVEDNYATKEDAKRAMDVYCHRLAKYIGAYTALMDGRLDAVVFTGGIGENAAMVRELSLGKLGVLGFEVDHERNLAARFGKSGFINKEGTRPAVVIPTNEELVIAQDASRLTA" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "ACETOLACTSYNIII-HCHAIN-MONOMER" "acetolactate synthase / acetohydroxybutanoate synthase, regulatory subunit" ["BrnP", "IlvH"] "MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGDKIMR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -41,22 +41,22 @@ "ACSERLYA-MONOMER" "cysteine synthase A" ["Ssi5", "CysK", "O-acetylserine sulfhydrylase A"] "MSKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFIAGVGTGGTLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPANLDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKELQQ" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "ACSERLYB-MONOMER" "cysteine synthase B" ["CysM"] "MSTLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKANPDAVVVAIICDRGDRYLSTGVFGEEHFSQGAGI" [] ["CCO-CYTOSOL"] 0 [] {} 1 "ACYLCOADEHYDROG-MONOMER" "acyl-CoA dehydrogenase" ["FadE", "YafH"] "MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWSAWVLVPLAIILVPFNFAPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQGKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTDEQKDHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGIVCMGEWQGQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPEKLLGGAEDLGITCALIPTTTPGVEIGRRHFPLNVPFQNGPTRGKDVFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGQSNFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLFKHIGHVGSNKVRSFWLGLTRGLTSSTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDILSQLYLASAVLKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLLQNFPNRVVAGLLNVVIFPTGRHYLAPSDKLDHKVAKILQVPNATRSRIGRGQYLTPSEHNPVGLLEEALVDVIAADPIHQRICKELGKNLPFTRLDELAHNALVKGLIDKDEAAILVKAEESRLRSINVDDFDPEELATKPVKLPEKVRKVEAA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"ACYLCOASYN-MONOMER" "long-chain-fatty-acid—CoA ligase" ["OldD", "FadD", "fatty acyl-CoA synthetase"] "MKKVWLNRYPADVPTEINPDRYQSLVDMFEQSVARYADQPAFVNMGEVMTFRKLEERSRAFAAYLQQGLGLKKGDRVALMMPNLLQYPVALFGILRAGMIVVNVNPLYTPRELEHQLNDSGASAIVIVSNFAHTLEKVVDKTAVQHVILTRMGDQLSTAKGTVVNFVVKYIKRLVPKYHLPDAISFRSALHNGYRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQVNATYGPLLHPGKELVVTALPLYHIFALTINCLLFIELGGQNLLITNPRDIPGLVKELAKYPFTAITGVNTLFNALLNNKEFQQLDFSSLHLSAGGGMPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDDNEVPPGQPGELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPSLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKVDNKA" ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 1 +"ACYLCOASYN-MONOMER" "long-chain-fatty-acid—CoA ligase" ["OldD", "FadD", "fatty acyl-CoA synthetase"] "MKKVWLNRYPADVPTEINPDRYQSLVDMFEQSVARYADQPAFVNMGEVMTFRKLEERSRAFAAYLQQGLGLKKGDRVALMMPNLLQYPVALFGILRAGMIVVNVNPLYTPRELEHQLNDSGASAIVIVSNFAHTLEKVVDKTAVQHVILTRMGDQLSTAKGTVVNFVVKYIKRLVPKYHLPDAISFRSALHNGYRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQVNATYGPLLHPGKELVVTALPLYHIFALTINCLLFIELGGQNLLITNPRDIPGLVKELAKYPFTAITGVNTLFNALLNNKEFQQLDFSSLHLSAGGGMPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDDNEVPPGQPGELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPSLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKVDNKA" ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 "ADCLY-MONOMER" "aminodeoxychorismate lyase" ["PabC"] "MFLINGHKQESLAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQRLQDACQRLMISCDFWPQLEQEMKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALSPVRLGRNPHLAGIKHLNRLEQVLIRSHLEQTNADEALVLDSEGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVMPVCACGDVSFSSATLYEYLAPLCERPN" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"ADENODEAMIN-MONOMER" "adenosine deaminase" ["Add"] "MIDTTLPLTDIHRHLDGNIRPQTILELGRQYNISLPAQSLETLIPHVQVIANEPDLVSFLTKLDWGVKVLASLDACRRVAFENIEDAARHGLHYVELRFSPGYMAMAHQLPVAGVVEAVIDGVREGCRTFGVQAKLIGIMSRTFGEAACQQELEAFLAHRDQITALDLAGDELGFPGSLFLSHFNRARDAGWHITVHAGEAAGPESIWQAIRELGAERIGHGVKAIEDRALMDFLAEQQIGIESCLTSNIQTSTVAELAAHPLKTFLEHGIRASINTDDPGVQGVDIIHEYTVAAPAAGLSREQIRQAQINGLEMAFLSAEEKRALREKVAAK" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 +"ADENODEAMIN-MONOMER" "adenosine deaminase" ["Add"] "MIDTTLPLTDIHRHLDGNIRPQTILELGRQYNISLPAQSLETLIPHVQVIANEPDLVSFLTKLDWGVKVLASLDACRRVAFENIEDAARHGLHYVELRFSPGYMAMAHQLPVAGVVEAVIDGVREGCRTFGVQAKLIGIMSRTFGEAACQQELEAFLAHRDQITALDLAGDELGFPGSLFLSHFNRARDAGWHITVHAGEAAGPESIWQAIRELGAERIGHGVKAIEDRALMDFLAEQQIGIESCLTSNIQTSTVAELAAHPLKTFLEHGIRASINTDDPGVQGVDIIHEYTVAAPAAGLSREQIRQAQINGLEMAFLSAEEKRALREKVAAK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 "ADENPRIBOSYLTRAN-MONOMER" "adenine phosphoribosyltransferase" ["Apt"] "MTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRLEKQGITSYSLVPFPGH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "ADENYL-KIN-MONOMER" "adenylate kinase" ["PlsA", "DnaW", "Adk"] "MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "ADENYLATECYC-MONOMER" null ["Cya", "CyaA"] "MYLYIETLKQRLDAINQLRVDRALAAMGPAFQQVYSLLPTLLHYHHPLMPGYLDGNVPKGICLYTPDETQRHYLNELELYRGMSVQDPPKGELPITGVYTMGSTSSVGQSCSSDLDIWVCHQSWLDSEERQLLQRKCSLLENWAASLGVEVSFFLIDENRFRHNESGSLGGEDCGSTQHILLLDEFYRTAVRLAGKRILWNMVPCDEEEHYDDYVMTLYAQGVLTPNEWLDLGGLSSLSAEEYFGASLWQLYKSIDSPYKAVLKTLLLEAYSWEYPNPRLLAKDIKQRLHDGEIVSFGLDPYCMMLERVTEYLTAIEDFTRLDLVRRCFYLKVCEKLSRERACVGWRRAVLSQLVSEWGWDEARLAMLDNRANWKIDQVREAHNELLDAMMQSYRNLIRFARRNNLSVSASPQDIGVLTRKLYAAFEALPGKVTLVNPQISPDLSEPNLTFIYVPPGRANRSGWYLYNRAPNIESIISHQPLEYNRYLNKLVAWAWFNGLLTSRTRLYIKGNGIVDLPKLQEMVADVSHHFPLRLPAPTPKALYSPCEIRHLAIIVNLEYDPTAAFRNQVVHFDFRKLDVFSFGENQNCLVGSVDLLYRNSWNEVRTLHFNGEQSMIEALKTILGKMHQDAAPPDSVEVFCYSQHLRGLIRTRVQQLVSECIELRLSSTRQETGRFKALRVSGQTWGLFFERLNVSVQKLENAIEFYGAISHNKLHGLSVQVETNHVKLPAVVDGFASEGIIQFFFEETQDENGFNIYILDESNRVEVYHHCEGSKEELVRDVSRFYSSSHDRFTYGSSFINFNLPQFYQIVKVDGREQVIPFRTKSIGNMPPANQDHDTPLLQQYFS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "ADENYLOSUCCINATE-SYN-MONOMER" "adenylosuccinate synthetase" ["AdeK", "PurA"] "MGNNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPDRTETMILRDPFDA" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MG+2": 1} 1 "ADENYLYLSULFKIN-MONOMER" "adenylyl-sulfate kinase" ["CysC"] "MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS" [] ["CCO-CYTOSOL"] 1 [] {} 1 "ADHC-MONOMER" "S-(hydroxymethyl)glutathione dehydrogenase" ["AdhC", "FrmA", "formaldehyde dehydrogenase"] "MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAVAGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVIRY" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 2} 1 -"ADHE-MONOMER" "fused acetaldehyde-CoA dehydrogenase and iron-dependent alcohol dehydrogenasealdehyde/alcohol dehydrogenase AdhE" ["AdhE", "AdhC", "Ana", "aldehyde/alcohol dehydrogenase AdhE"] "MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAADARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAEPIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKDATNKAADIVLQAAIAAGAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFATHGGYLLQGKELKAVQDVILKNGALNAAIVGQPAYKIAELAGFSVPENTKILIGEVTVVDESEPFAHEKLSPTLAMYRAKDFEDAVEKAEKLVAMGGIGHTSCLYTDQDNQPARVSYFGQKMKTARILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGVETEVFFEVEADPTLSIVRKGAELANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDIRKRIYKFPKMGVKAKMIAVTTTSGTGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHAMEAYVSVLASEFSDGQALQALKLLKEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLANALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKLLAWLETLKAELGIPKSIREAGVQEADFLANVDKLSEDAFDDQCTGANPRYPLISELKQILLDTYYGRDYVEGETAAKKEAAPAKAEKKAKKSA" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"FE+2": 1} 1 +"ADHE-MONOMER" "fused acetaldehyde-CoA dehydrogenase and Fe-dependent alcohol dehydrogenasealdehyde/alcohol dehydrogenase AdhE" ["AdhE", "AdhC", "Ana", "aldehyde/alcohol dehydrogenase AdhE"] "MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAADARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAEPIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKDATNKAADIVLQAAIAAGAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFATHGGYLLQGKELKAVQDVILKNGALNAAIVGQPAYKIAELAGFSVPENTKILIGEVTVVDESEPFAHEKLSPTLAMYRAKDFEDAVEKAEKLVAMGGIGHTSCLYTDQDNQPARVSYFGQKMKTARILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGVETEVFFEVEADPTLSIVRKGAELANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDIRKRIYKFPKMGVKAKMIAVTTTSGTGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHAMEAYVSVLASEFSDGQALQALKLLKEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLANALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKLLAWLETLKAELGIPKSIREAGVQEADFLANVDKLSEDAFDDQCTGANPRYPLISELKQILLDTYYGRDYVEGETAAKKEAAPAKAEKKAKKSA" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"FE+2": 1} 1 "ADHP-MONOMER" "ethanol dehydrogenase / alcohol dehydrogenase" ["YddN", "AdhP"] "MKAAVVTKDHHVDVTYKTLRSLKHGEALLKMECCGVCHTDLHVKNGDFGDKTGVILGHEGIGVVAEVGPGVTSLKPGDRASVAWFYEGCGHCEYCNSGNETLCRSVKNAGYSVDGGMAEECIVVADYAVKVPDGLDSAAASSITCAGVTTYKAVKLSKIRPGQWIAIYGLGGLGNLALQYAKNVFNAKVIAIDVNDEQLKLATEMGADLAINSHTEDAAKIVQEKTGGAHAAVVTAVAKAAFNSAVDAVRAGGRVVAVGLPPESMSLDIPRLVLDGIEVVGSLVGTRQDLTEAFQFAAEGKVVPKVALRPLADINTIFTEMEEGKIRGRMVIDFRH" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 2} 1 "AERGLYC3PDEHYDROG-MONOMER" "aerobic glycerol 3-phosphate dehydrogenase" ["GlyD", "GlpD"] "METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRPAWMIRIGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPSPYGIRLIKGSHIVVPRVHTQKQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYKGDPKAVKIEESEINYLLNVYNTHFKKQLSRDDIVWTYSGVRPLCDDESDSPQAITRDYTLDIHDENGKAPLLSVFGGKLTTYRKLAEHALEKLTPYYQGIGPAWTKESVLPGGAIEGDRDDYAARLRRRYPFLTESLARHYARTYGSNSELLLGNAGTVSDLGEDFGHEFYEAELKYLVDHEWVRRADDALWRRTKQGMWLNADQQSRVSQWLVEYTQQRLSLAS" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL"] 0 [] {} 1 "AGAA-MONOMER" "putative truncated N-acetylgalactosamine-6-phosphate deacetylase" ["YraA", "AgaA"] "MHCYNGMTGLHHREPGMVGAGLTDKRAWLELIADGHHVHPAAMSLCCCCAKERIVLITDAMQAAGMPDGRYTLCGEEVQMHGGVVRTASGGLAGSTLSVDAAVRNMVELTGVTPAEAIHMASLHPARMLGVDGVLGSLKPGKRASVVALDSGLHVQQIWIQGQLASF" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"AGAB-MONOMER" "galactosamine-specific PTS enzyme IIB component" ["AgaB", "YraD"] "MTSPNILLTRIDNRLVHGQVGVTWTSTIGANLLVVVDDVVANDDIQQKLMGITAETYGFGIRFFTIEKTINVIGKAAPHQKIFLICRTPQTVRKLVEGGIDLKDVNVGNMHFSEGKKQISSKVYVDDQDLTDLRFIKQRGVNVFIQDVPGDQKEQIPD" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"AGAC-MONOMER" "galactosamine-specific PTS enzyme IIC component" ["AgaC", "YraE"] "MHEITLLQGLSLAALVFVLGIDFWLEALFLFRPIIVCTLTGAILGDIQTGLITGGLTELAFAGLTPAGGVQPPNPIMAGLMTTVIAWSTGVDAKTAIGLGLPFSLLMQYVILFFYSAFSLFMTKADKCAKEADTAAFSRLNWTTMLIVASAYAVIAFLCTYLAQGAMQALVKAMPAWLTHGFEVAGGILPAVGFGLLLRVMFKAQYIPYLIAGFLFVCYIQVSNLLPVAVLGAGFAVYEFFNAKSRQQAQPQPVASKNEEEDYSNGI" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"AGAD-MONOMER" "galactosamine-specific PTS enzyme IID component" ["YraF", "AgaD"] "MGSEISKKDITRLGFRSSLLQASFNYERMQAGGFTWAMLPILKKIYKDDKPGLSAAMKDNLEFINTHPNLVGFLMGLLISMEEKGENRDTIKGLKVALFGPIAGIGDAIFWFTLLPIMAGICSSFASQGNLLGPILFFAVYLLIFFLRVGWTHVGYSVGVKAIDKVRENSQMIARSATILGITVIGGLIASYVHINVVTSFAIDNTHSVALQQDFFDKVFPNILPMAYTLLMYYFLRVKKAHPVLLIGVTFVLSIVCSAFGIL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"AGAB-MONOMER" "cryptic galactosamine-specific PTS enzyme IIB component" ["AgaB", "YraD"] "MTSPNILLTRIDNRLVHGQVGVTWTSTIGANLLVVVDDVVANDDIQQKLMGITAETYGFGIRFFTIEKTINVIGKAAPHQKIFLICRTPQTVRKLVEGGIDLKDVNVGNMHFSEGKKQISSKVYVDDQDLTDLRFIKQRGVNVFIQDVPGDQKEQIPD" [] ["CCO-CYTOSOL"] 0 [] {} 1 +"AGAC-MONOMER" "cryptic galactosamine-specific PTS enzyme IIC component" ["AgaC", "YraE"] "MHEITLLQGLSLAALVFVLGIDFWLEALFLFRPIIVCTLTGAILGDIQTGLITGGLTELAFAGLTPAGGVQPPNPIMAGLMTTVIAWSTGVDAKTAIGLGLPFSLLMQYVILFFYSAFSLFMTKADKCAKEADTAAFSRLNWTTMLIVASAYAVIAFLCTYLAQGAMQALVKAMPAWLTHGFEVAGGILPAVGFGLLLRVMFKAQYIPYLIAGFLFVCYIQVSNLLPVAVLGAGFAVYEFFNAKSRQQAQPQPVASKNEEEDYSNGI" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"AGAD-MONOMER" "cryptic galactosamine-specific PTS enzyme IID component" ["YraF", "AgaD"] "MGSEISKKDITRLGFRSSLLQASFNYERMQAGGFTWAMLPILKKIYKDDKPGLSAAMKDNLEFINTHPNLVGFLMGLLISMEEKGENRDTIKGLKVALFGPIAGIGDAIFWFTLLPIMAGICSSFASQGNLLGPILFFAVYLLIFFLRVGWTHVGYSVGVKAIDKVRENSQMIARSATILGITVIGGLIASYVHINVVTSFAIDNTHSVALQQDFFDKVFPNILPMAYTLLMYYFLRVKKAHPVLLIGVTFVLSIVCSAFGIL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "AGAX-MONOMER" "putative PTS enzyme IIA component YadI" ["AgaX", "YadI"] "MLGWVITCHDDRAQEILDALEKKHGALLQCRAVNFWRGLSSNMLSRMMCDALHEADSGEGVIFLTDIAGAPPYRVASLLSHKHSRCEVISGVTLPLIEQMMACRETMTSSEFRERIVELGAPEVSSLWHQQQKNPPFVLKHNLYEY" [] ["CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 0 "AGMATIN-MONOMER" "agmatinase" ["SpeB"] "MSTLGHQYDNSLVSNAFGFLRLPMNFQPYDSDADWVITGVPFDMATSGRAGGRHGPAAIRQVSTNLAWEHNRFPWNFDMRERLNVVDCGDLVYAFGDAREMSEKLQAHAEKLLAAGKRMLSFGGDHFVTLPLLRAHAKHFGKMALVHFDAHTDTYANGCEFDHGTMFYTAPKEGLIDPNHSVQIGIRTEFDKDNGFTVLDACQVNDRSVDDVIAQVKQIVGDMPVYLTFDIDCLDPAFAPGTGTPVIGGLTSDRAIKLVRGLKDLNIVGMDVVEVAPAYDQSEITALAAATLALEMLYIQAAKKGE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MN+2": 2} 1 "AICARTRANSIMPCYCLO-CPLX" "bifunctional AICAR transformylase/IMP cyclohydrolase" ["PurH"] "MQQRRPVRRALLSVSDKAGIVEFAQALSARGVELLSTGGTARLLAEKGLPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGQDDAIMEEHQIQPIDMVVVNLYPFAQTVAREGCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVKSSDYDAIIKEMDDNEGSLTLATRFDLAIKAFEHTAAYDSMIANYFGSMVPAYHGESKEAAGRFPRTLNLNFIKKLDMRYGENSHQQAAFYIEENVKEASVATATQVQGKALSYNNIADTDAALECVKEFAEPACVIVKHANPCGVAIGNSILDAYDRAYKTDPTSAFGGIIAFNRELDAETAQAIISRQFVEVIIAPSASEEALKITAAKQNVRVLTCGQWGERVPGLDFKRVNGGLLVQDRDLGMVGAEELRVVTKRQPSEQELRDALFCWKVAKFVKSNAIVYAKNNMTIGIGAGQMSRVYSAKIAGIKAADEGLEVKGSSMASDAFFPFRDGIDAAAAAGVTCVIQPGGSIRDDEVIAAADEHGIAMLFTDMRHFRH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -69,7 +69,7 @@ "ALDHDEHYDROG-MONOMER" "γ-glutamyl-γ-aminobutyraldehyde dehydrogenase" ["AldH", "PuuC"] "MNFHHLAYWQDKALSLAIENRLFINGEYTAAAENETFETVDPVTQAPLAKIARGKSVDIDRAMSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELALLETLDTGKPIRHSLRDDIPGAARAIRWYAEAIDKVYGEVATTSSHELAMIVREPVGVIAAIVPWNFPLLLTCWKLGPALAAGNSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLNVVTGFGHEAGQALSRHNDIDAIAFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIVFADCPDLQQAASATAAGIFYNQGQVCIAGTRLLLEESIADEFLALLKQQAQNWQPGHPLDPATTMGTLIDCAHADSVHSFIREGESKGQLLLDGRNAGLAAAIGPTIFVDVDPNASLSREEIFGPVLVVTRFTSEEQALQLANDSQYGLGAAVWTRDLSRAHRMSRRLKAGSVFVNNYNDGDMTVPFGGYKQSGNGRDKSLHALEKFTELKTIWISLEA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "ALDOSE1EPIM-MONOMER" "galactose-1-epimerase" ["GalM"] "MLNETPALAPDGQPYRLLTLRNNAGMVVTLMDWGATLLSARIPLSDGSVREALLGCASPECYQDQAAFLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQLHGGPEGFDKRRWQIVNQNDRQVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITYRATVDKPCPVNMTNHVYFNLDGEQSDVRNHKLQILADEYLPVDEGGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRKVKGYDHAFLLQAKGDGKKVAAHVWSADEKLQLKVYTTAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFLPDSPNHPEWPQPDCFLRPGEEYSSLTEYQFIAE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "ALKAPHOSPHA-MONOMER" "alkaline phosphatase" ["PsiA", "PhoA"] "MKQSTIALALLPLLFTPVTKARTPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {"MG+2": 1, "ZN+2": 2} 1 -"ALPHA-AMYL-CYTO-MONOMER" null ["YedC", "AmyA"] "MRNPTLLQCFHWYYPEGGKLWPELAERADGFNDIGINMVWLPPAYKGASGGYSVGYDSYDLFDLGEFDQKGSIPTKYGDKAQLLAAIDALKRNDIAVLLDVVVNHKMGADEKEAIRVQRVNADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCFSGIDHIENPDEDGIFKIVNDYTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKYWARWVMEQTQCDGFRLDAVKHIPAWFYKEWIEHVQEVAPKPLFIVAEYWSHEVDKLQTYIDQVEGKTMLFDAPLQMKFHEASRMGRDYDMTQIFTGTLVEADPFHAVTLVANHDTQPLQALEAPVEPWFKPLAYALILLRENGVPSVFYPDLYGAHYEDVGGDGQTYPIDMPIIEQLDELILARQRFAHGVQTLFFDHPNCIAFSRSGTDEFPGCVVVMSNGDDGEKTIHLGENYGNKTWRDFLGNRQERVVTDENGEATFFCNGGSVSVWVIEEVI" ["CCO-CYTOSOL"] ["CCO-EXTRACELLULAR", "CCO-CYTOSOL"] 0 [] {"CA+2": 1} 0 +"ALPHA-AMYL-CYTO-MONOMER" null ["YedC", "AmyA"] "MRNPTLLQCFHWYYPEGGKLWPELAERADGFNDIGINMVWLPPAYKGASGGYSVGYDSYDLFDLGEFDQKGSIPTKYGDKAQLLAAIDALKRNDIAVLLDVVVNHKMGADEKEAIRVQRVNADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCFSGIDHIENPDEDGIFKIVNDYTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKYWARWVMEQTQCDGFRLDAVKHIPAWFYKEWIEHVQEVAPKPLFIVAEYWSHEVDKLQTYIDQVEGKTMLFDAPLQMKFHEASRMGRDYDMTQIFTGTLVEADPFHAVTLVANHDTQPLQALEAPVEPWFKPLAYALILLRENGVPSVFYPDLYGAHYEDVGGDGQTYPIDMPIIEQLDELILARQRFAHGVQTLFFDHPNCIAFSRSGTDEFPGCVVVMSNGDDGEKTIHLGENYGNKTWRDFLGNRQERVVTDENGEATFFCNGGSVSVWVIEEVI" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"CA+2": 1} 0 "ALPHA-AMYL-PERI-MONOMER" null ["MalS"] "MKLAACFLTLLPGFAVAASWTSPGFPAFSEQGTGTFVSHAQLPKGTRPLTLNFDQQCWQPADAIKLNQMLSLQPCSNTPPQWRLFRDGEYTLQIDTRSGTPTLMISIQNAAEPVASLVRECPKWDGLPLTVDVSATFPEGAAVRDYYSQQIAIVKNGQIMLQPAATSNGLLLLERAETDTSAPFDWHNATVYFVLTDRFENGDPSNDQSYGRHKDGMAEIGTFHGGDLRGLTNKLDYLQQLGVNALWISAPFEQIHGWVGGGTKGDFPHYAYHGYYTQDWTNLDANMGNEADLRTLVDSAHQRGIRILFDVVMNHTGYATLADMQEYQFGALYLSGDEVKKSLGERWSDWKPAAGQTWHSFNDYINFSDKTGWDKWWGKNWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTTASGLPVFYKNKMDTHAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKTEASAALREWKKANPDKALDDKPFWMTGEAWGHGVMQSDYYRHGFDAMINFDYQEQAAKAVDCLAQMDTTWQQMAEKLQGFNVLSYLSSHDTRLFREGGDKAAELLLLAPGAVQIFYGDESSRPFGPTGSDPLQGTRSDMNWQDVSGKSAASVAHWQKISQFRARHPAIGAGKQTTLLLKQGYGFVREHGDDKVLVVWAGQQ" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {"CA+2": 1} 0 "ALPHACOMP-MONOMER" "sulfite reductase, flavoprotein subunit" ["CysJ", "SiR-FP", "α subunit"] "MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGMRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKDGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY" [] ["CCO-CYTOSOL"] 1 [] {} 1 "ALPHAGALACTOSID-MONOMER" "α-galactosidase" ["MelA"] "MMSAPKITFIGAGSTIFVKNILGDVFHREALKTAHIALMDIDPTRLEESHIVVRKLMDSAGASGKITCHTQQKEALEDADFVVVAFQIGGYEPCTVTDFEVCKRHGLEQTIADTLGPGGIMRALRTIPHLWQICEDMTEVCPDATMLNYVNPMAMNTWAMYARYPHIKQVGLCHSVQGTAEELARDLNIDPATLRYRCAGINHMAFYLELERKTADGSYVNLYPELLAAYEAGQAPKPNIHGNTRCQNIVRYEMFKKLGYFVTESSEHFAEYTPWFIKPGREDLIERYKVPLDEYPKRCVEQLANWHKELEEYKKASRIDIKPSREYASTIMNAIWTGEPSVIYGNVRNDGLIDNLPQGCCVEVACLVDANGIQPTKVGTLPSHLAALMQTNINVQTLLTEAILTENRDRVYHAAMMDPHTAAVLGIDEIYALVDDLIAAHGDWLPGWLHR" ["CCO-CYTOSOL"] [] 0 [] {"MN+2": 1} 1 @@ -80,23 +80,23 @@ "AMPG-MONOMER" "muropeptide:H+ symporter" ["AmpG"] "MSSQYLRIFQQPRSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFFGRRRGWLLATQILLLVAIAAMGFLEPGTQLRWMAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLGMLVSGGLALWLADKWLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGALYGGILMQRLSLFRALLIFGILQGASNAGYWLLSITDKHLYSMGAAVFFENLCGGMGTSAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWSTFYLFSVAAAVPGLILLLVCRQTLEYTRVNDNFISRTAYPAGYAFAMWTLAAGVSLLAVWLLLLTMDALDLTHFSFLPALLEVGVLVALSGVVLGGLLDYLALRKTHLT" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "AMTB-MONOMER" "ammonium transporter" ["YbaG", "AmtB ammonium Amt transporter", "AmtB"] "MKIATIKTGLASLAMLPGLVMAAPAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSHGENAYNA" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "AMYLOMALT-MONOMER" "4-α-glucanotransferase" ["MalA", "MalQ", "amylomaltase"] "MESKRLDNAALAAGISPNYINAHGKPQSISAETKRRLLDAMHQRTATKVAVTPVPNVMVYTSGKKMPMVVEGSGEYSWLLTTEEGTQYKGHVTGGKAFNLPTKLPEGYHTLTLTQDDQRAHCRVIVAPKRCYEPQALLNKQKLWGACVQLYTLRSEKNWGIGDFGDLKAMLVDVAKRGGSFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFHLSEEAQAWWQLPTTQQTLQQARDADWVDYSTVTALKMTALRMAWKGFAQRDDEQMAAFRQFVAEQGDSLFWQAAFDALHAQQVKEDEMRWGWPAWPEMYQNVDSPEVRQFCEEHRDDVDFYLWLQWLAYSQFAACWEISQGYEMPIGLYRDLAVGVAEGGAETWCDRELYCLKASVGAPPDILGPLGQNWGLPPMDPHIITARAYEPFIELLRANMQNCGALRIDHVMSMLRLWWIPYGETADQGAYVHYPVDDLLSILALESKRHRCMVIGEDLGTVPVEIVGKLRSSGVYSYKVLYFENDHEKTFRAPKAYPEQSMAVAATHDLPTLRGYWECGDLTLGKTLGLYPDEVVLRGLYQDRELAKQGLLDALHKYGCLPKRAGHKASLMSMTPTLNRGLQRYIADSNSALLGLQPEDWLDMAEPVNIPGTSYQYKNWRRKLSATLESMFADDGVNKLLKDLDRRRRAAAKKK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"ANGLYC3PDEHYDROGSUBUNITA-MONOMER" "anaerobic glycerol-3-phosphate dehydrogenase subunit A" ["GlpA"] "MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 -"ANGLYC3PDEHYDROGSUBUNITB-MONOMER" "anaerobic glycerol-3-phosphate dehydrogenase subunit B" ["GlpB"] "MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYSLLEPQRVLDLACQAQALIAESGAQLQGSVELAHQRVTPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELGLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 1 +"ANGLYC3PDEHYDROGSUBUNITA-MONOMER" "anaerobic glycerol-3-phosphate dehydrogenase subunit A" ["GlpA"] "MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"ANGLYC3PDEHYDROGSUBUNITB-MONOMER" "anaerobic glycerol-3-phosphate dehydrogenase subunit B" ["GlpB"] "MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYSLLEPQRVLDLACQAQALIAESGAQLQGSVELAHQRVTPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELGLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 "ANGLYC3PDEHYDROGSUBUNITC-MONOMER" "anaerobic glycerol-3-phosphate dehydrogenase subunit C" ["GlpC"] "MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRNIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"CPD-7": 2} 1 "ANSA-MONOMER" "L-asparaginase 1" ["AnsA", "asparaginase I", "AnsI", "EcAI"] "MQKKSIYVAYTGGTIGMQRSEQGYIPVSGHLQRQLALMPEFHRPEMPDFTIHEYTPLMDSSDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANYPINEVTLFFNNRLYRGNRTTKAHADGFDAFASPNLPPLLEAGIHIRRLNTPPAPHGEGELIVHPITPQPIGVVTIYPGISADVVRNFLRQPVKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVNLTQCMSGKVNMGGYATGNALAHAGVIGGADMTVEATLTKLHYLLSQELDTETIRKAMSQNLRGELTPDD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"ANSB-MONOMER" "L-asparaginase 2" ["AnsB", "asparaginase II", "AnsII", "EcAII"] "MEFFKKTALAALVMGFSGAALALPNITILATGGTIAGGGDSATKSNYTVGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQY" ["CCO-PERI-BAC"] ["CCO-CYTOSOL", "CCO-PERI-BAC"] 0 [] {} 1 +"ANSB-MONOMER" "L-asparaginase 2" ["AnsB", "asparaginase II", "AnsII", "EcAII"] "MEFFKKTALAALVMGFSGAALALPNITILATGGTIAGGGDSATKSNYTVGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQY" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "ANSP-MONOMER" null ["YncF", "AnsP", "L-asparagine permease"] "MSKHDTDTSDQHAAKRRWLNAHEEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYPNGTYTIAALPIIGILLVIGWFGVRKRVAEIHSTAPVVEEDEEKQEIVFKPETAS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "ANTHRANSYNCOMPI-MONOMER" "anthranilate synthase subunit TrpE" ["TryD", "TrpE", "α subunit", "anthranilate synthase component I"] "MQTQKPTLELLTCEGAYRDNPTALFHQLCGDRPATLLLESADIDSKDDLKSLLLVDSALRITALGDTVTIQALSGNGEALLALLDNALPAGVESEQSPNCRVLRFPPVSPLLDEDARLCSLSVFDAFRLLQNLLNVPKEEREAMFFGGLFSYDLVAGFEDLPQLSAENNCPDFCFYLAETLMVIDHQKKSTRIQASLFAPNEEEKQRLTARLNELRQQLTEAAPPLPVVSVPHMRCECNQSDEEFGGVVRLLQKAIRAGEIFQVVPSRRFSLPCPSPLAAYYVLKKSNPSPYMFFMQDNDFTLFGASPESSLKYDATSRQIEIYPIAGTRPRGRRADGSLDRDLDSRIELEMRTDHKELSEHLMLVDLARNDLARICTPGSRYVADLTKVDRYSYVMHLVSRVVGELRHDLDALHAYRACMNMGTLSGAPKVRAMQLIAEAEGRRRGSYGGAVGYFTAHGDLDTCIVIRSALVENGIATVQAGAGVVLDSVPQSEADETRNKARAVLRAIATAHHAQETF" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "ANTHRANSYNCOMPII-MONOMER" "anthranilate synthase subunit TrpD" ["TrpD", "TrpGD", "anthranilate synthase component II"] "MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAGEILHGKASSIEHDGQAMFAGLTNPLPVARYHSLVGSNIPAGLTINAHFNGMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQQKLEPANTLQPILEKLYQAQTLSQQESHQLFSAVVRGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPDYLFADIVGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNADKSRQALDELGVCFLFAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGVYSPELVLPIAETLRVLGYQRAAVVHSGGMDEVSLHAPTIVAELHDGEIKSYQLTAEDFGLTPYHQEQLAGGTPEENRDILTRLLQGKGDAAHEAAVAANVAMLMRLHGHEDLQANAQTVLEVLRSGSAYDRVTALAARG" [] ["CCO-CYTOSOL"] 1 [] {} 1 "APHA-MONOMER" "acid phosphatase / phosphotransferase" ["HobH", "YjbP", "AphA"] "MRKITQAISAVCLLFALNSSAVALASSPSPLNPGTNVARLAEQAPIHWVSVAQIENSLAGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDKPGQNTKSQWLQDKNIRIFYGDSDNDITAARDVGARGIRILRASNSTYKPLPQAGAFGEEVIVNSEY" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {"MG+2": 1} 1 -"APPA-MONOMER" "periplasmic phosphoanhydride phosphatase/multiple inositol-polyphosphate phosphatase" ["AppA"] "MKAILIPFLSLLIPLTPQSAFAQSEPELKLESVVIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSHQWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGGALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEARIPACSL" ["CCO-PERI-BAC"] ["CCO-LYSOSOME", "CCO-PERI-BAC"] 0 [] {} 1 +"APPA-MONOMER" "periplasmic phosphoanhydride phosphatase/multiple inositol-polyphosphate phosphatase" ["AppA"] "MKAILIPFLSLLIPLTPQSAFAQSEPELKLESVVIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSHQWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGGALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEARIPACSL" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "APPB-MONOMER" "cytochrome bd-II subunit 2" ["CyxB", "AppB", "CbdB"] "MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNENELY" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"APPC-MONOMER" "cytochrome bd-II subunit 1" ["CyxA", "CbdA", "AppC"] "MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTGKTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWSFYSNYVGDIFGAPLAMEALMAFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNLSALWILNANGWMQYPTGAHFDIDTLRMEMTSFSELVFNPVSQVKFVHTVMAGYVTGAMFIMAISAWYLLRGRERNVALRSFAIGSVFGTLAIIGTLQLGDSSAYEVAQVQPVKLAAMEGEWQTEPAPAPFHVVAWPEQDQERNAFALKIPALLGILATHSLDKPVPGLKNLMAETYPRLQRGRMAWLLMQEISQGNREPHVLQAFRGLEGDLGYGMLLSRYAPDMNHVTAAQYQAAMRGAIPQVAPVFWSFRIMVGCGSLLLLVMLIALVQTLRGKIDQHRWVLKMALWSLPLPWIAIEAGWFMTEFGRQPWAIQDILPTYSAHSALTTGQLAFSLIMIVGLYTLFLIAEVYLMQKYARLGPSAMQSEQPTQQQG" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {"PROTOHEME": 1} 1 +"APPC-MONOMER" "cytochrome bd-II subunit 1" ["CyxA", "CbdA", "AppC"] "MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTGKTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWSFYSNYVGDIFGAPLAMEALMAFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNLSALWILNANGWMQYPTGAHFDIDTLRMEMTSFSELVFNPVSQVKFVHTVMAGYVTGAMFIMAISAWYLLRGRERNVALRSFAIGSVFGTLAIIGTLQLGDSSAYEVAQVQPVKLAAMEGEWQTEPAPAPFHVVAWPEQDQERNAFALKIPALLGILATHSLDKPVPGLKNLMAETYPRLQRGRMAWLLMQEISQGNREPHVLQAFRGLEGDLGYGMLLSRYAPDMNHVTAAQYQAAMRGAIPQVAPVFWSFRIMVGCGSLLLLVMLIALVQTLRGKIDQHRWVLKMALWSLPLPWIAIEAGWFMTEFGRQPWAIQDILPTYSAHSALTTGQLAFSLIMIVGLYTLFLIAEVYLMQKYARLGPSAMQSEQPTQQQG" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG"] 0 [] {"PROTOHEME": 1} 1 "AQPZ-MONOMER" "water channel AqpZ" ["BniP", "AqpZ"] "MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "ARABISOM-MONOMER" "L-arabinose isomerase" ["AraA"] "MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMTPATQIHGKKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAAEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MN+2": 1} 1 "ARAE-MONOMER" "arabinose:H+ symporter" ["AraE", "arabinose MFS transporter"] "MVTINTESALTPRSLRDTRRMNMFVSVAAAVAGLLFGLDIGVIAGALPFITDHFVLTSRLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLGSIGSAFATSVEMLIAARVVLGIAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVLAFLSDTAFSYSGNWRAMLGVLALPAVLLIILVVFLPNSPRWLAEKGRHIEAEEVLRMLRDTSEKAREELNEIRESLKLKQGGWALFKINRNVRRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMALGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTALNIAFVGITFWLIPETKNVTLEHIERKLMAGEKLRNIGV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "ARAF-MONOMER" "arabinose ABC transporter periplasmic binding protein" [] "MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKKGLGGK" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 -"ARAG-MONOMER" "arabinose ABC transporter ATP binding subunit" [] "MQQSTPYLSFRGIGKTFPGVKALTDISFDCYAGQVHALMGENGAGKSTLLKILSGNYAPTTGSVVINGQEMSFSDTTAALNAGVAIIYQELHLVPEMTVAENIYLGQLPHKGGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVEIAKALARNAKIIAFDEPTSSLSAREIDNLFRVIRELRKEGRVILYVSHRMEEIFALSDAITVFKDGRYVKTFTDMQQVDHDALVQAMVGRDIGDIYGWQPRSYGEERLRLDAVKAPGVRTPISLAVRSGEIVGLFGLVGAGRSELMKGMFGGTQITAGQVYIDQQPIDIRKPSHAIAAGMMLCPEDRKAEGIIPVHSVRDNINISARRKHVLGGCVINNGWEENNADHHIRSLNIKTPGAEQLIMNLSGGNQQKAILGRWLSEEMKVILLDEPTRGIDVGAKHEIYNVIYALAAQGVAVLFASSDLPEVLGVADRIVVMREGEIAGELLHEQADERQALSLAMPKVSQAVA" ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"ARAG-MONOMER" "arabinose ABC transporter ATP binding subunit" [] "MQQSTPYLSFRGIGKTFPGVKALTDISFDCYAGQVHALMGENGAGKSTLLKILSGNYAPTTGSVVINGQEMSFSDTTAALNAGVAIIYQELHLVPEMTVAENIYLGQLPHKGGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVEIAKALARNAKIIAFDEPTSSLSAREIDNLFRVIRELRKEGRVILYVSHRMEEIFALSDAITVFKDGRYVKTFTDMQQVDHDALVQAMVGRDIGDIYGWQPRSYGEERLRLDAVKAPGVRTPISLAVRSGEIVGLFGLVGAGRSELMKGMFGGTQITAGQVYIDQQPIDIRKPSHAIAAGMMLCPEDRKAEGIIPVHSVRDNINISARRKHVLGGCVINNGWEENNADHHIRSLNIKTPGAEQLIMNLSGGNQQKAILGRWLSEEMKVILLDEPTRGIDVGAKHEIYNVIYALAAQGVAVLFASSDLPEVLGVADRIVVMREGEIAGELLHEQADERQALSLAMPKVSQAVA" ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "ARAH-MONOMER" "arabinose ABC transporter membrane subunit" ["AraH"] "MSSVSTSGSGAPKSSFSFGRIWDQYGMLVVFAVLFIACAIFVPNFATFINMKGLGLAISMSGMVACGMLFCLASGDFDLSVASVIACAGVTTAVVINLTESLWIGVAAGLLLGVLCGLVNGFVIAKLKINALITTLATMQIVRGLAYIISDGKAVGIEDESFFALGYANWFGLPAPIWLTVACLIIFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLSGLVSAIAGIILASRMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKISYVVAGILILGTVENAMNLLNISPFAQYVVRGLILLAAVIFDRYKQKAKRTV" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "ARAJ-MONOMER" "putative transport protein AraJ" ["AraT", "AraJ", "AraJ MFS transporter"] "MKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVMASVYFWVPDIRDEAKGNLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADTPVLAKPLG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "ARCA-MONOMER" "DNA-binding transcriptional dual regulator ArcA" ["CpxC", "Dye", "FexA", "Msp", "Seg", "SfrA", "ArcA", "dye resistance protein", "ArcA response regulator"] "MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -124,10 +124,10 @@ "ARTI-MONOMER" "putative ABC transporter periplasmic binding protein ArtI" [] "MKKVLIAALIAGFSLSATAAETIRFATEASYPPFESIDANNQIVGFDVDLAQALCKEIDATCTFSNQAFDSLIPSLKFRRVEAVMAGMDITPEREKQVLFTTPYYDNSALFVGQQGKYTSVDQLKGKKVGVQNGTTHQKFIMDKHPEITTVPYDSYQNAKLDLQNGRIDGVFGDTAVVTEWLKDNPKLAAVGDKVTDKDYFGTGLGIAVRQGNTELQQKLNTALEKVKKDGTYETIYNKWFQK" ["CCO-PERI-BAC"] ["CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 1 "ARTJ-MONOMER" "L-arginine ABC transporter periplasmic binding protein" [] "MKKLVLAALLASFTFGASAAEKINFGVSATYPPFESIGANNEIVGFDIDLAKALCKQMQAECTFTNHAFDSLIPSLKFRKYDAVISGMDITPERSKQVSFTTPYYENSAVVIAKKDTYKTFADLKGKRIGMENGTTHQKYIQDQHPEVKTVSYDSYQNAFIDLKNGRIDGVFGDTAVVNEWLKTNPQLGVATEKVTDPQYFGTGLGIAVRPDNKALLEKLNNALAAIKADGTYQKISDQWFPQ" ["CCO-PERI-BAC"] ["CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 1 "ARTM-MONOMER" "L-arginine ABC transporter membrane subunit ArtM" [] "MFEYLPELMKGLHTSLTLTVASLIVALILALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLIYYGPGQFPTLQEYPALWHLLSEPWLCALIALSLNSAAYTTQLFYGAIRAIPEGQWQSCSALGMSKKDTLAILLPYAFKRSLSSYSNEVVLVFKSTSLAYTITLMEVMGYSQLLYGRTYDVMVFGAAGIIYLVVNGLLTLMMRLIERKALAFERRN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"ARTP-MONOMER" "L-arginine ABC transporter ATP binding subunit" [] "MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFTKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETNITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTEAFKNYLSH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"ARTP-MONOMER" "L-arginine ABC transporter ATP binding subunit" [] "MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFTKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETNITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTEAFKNYLSH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "ARTQ-MONOMER" "L-arginine ABC transporter membrane subunit ArtQ" [] "MNEFFPLASAAGMTVGLAVCALIVGLALAMFFAVWESAKWRPVAWAGSALVTILRGLPEILVVLFIYFGSSQLLLTLSDGFTINLGFVQIPVQMDIENFDVSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIVAAAIYLVITLLSQYILKRIDLRATRFERRPS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "ARYLSULFAT-MONOMER" "putative sulfatase AslA" ["GppB", "AtsA", "AslA"] "MEFSFSPKRLVVAVAAALPLMASAADTPSTATARKGFAGYDHPNQYLVKPATTIADNMMPVMQHPAQDKETQQKLAELEKKTGKKPNVVVFLLDDVGWMDVGFNGGGVAVGNPTPDIDAVASQGLILTSAYSQPSSSPTRATILTGQYSIHHGILMPPMYGQPGGLQGLTTLPQLLHDQGYVTQAIGKWHMGENKESQPQNVGFDDFRGFNSVSDMYTEWRDVHVNPEVALSPDRSEYIKQLPFSKDDVHAVRGGEQQAIADITPKYMEDLDQRWMDYGVKFLDKMAKSDKPFFLYYGTRGCHFDNYPNAKYAGSSPARTSYGDCMVEMNDVFANLYKTLEKNGQLDNTLIVFTSDNGPEAEVPPHGRTPFRGAKGSTWEGGVRVPTFVYWKGMIQPRKSDGIVDLADLFPTALDLAGHPGAKVANLVPKTTFIDGVDQTSFFLGTNGQSNRKAEHYFLNGKLAAVRMDEFKYHVLIQQPYAYTQSGYQGGFTGTVMQTAGSSVFNLYTDPQESDSIGVRHIPMGVPLQTEMHAYMEILKKYPPRAQIKSD" [] ["CCO-PERI-BAC"] 0 [] {"CA+2": 1} 0 -"ASCF-MONOMER" "β-glucoside specific PTS enzyme IIBC component" ["Sac", "AscF"] "MAKNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLLPGDMQPAQPVGKPKLTLRRIGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFFLPLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHVEFALIPVTAVKYTYTVIPALVMTWCLSYIERWVDSITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIAETGKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMAGISEPALYGVAIRLKRPLIASLISGFICGAVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFAVMALAVVLSFILTLLLGFEDIPVEEAAAQARKYQSVQPTVAKEVSLN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"ASCF-MONOMER" "cryptic β-glucoside specific PTS enzyme IIBC component" ["Sac", "AscF"] "MAKNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLLPGDMQPAQPVGKPKLTLRRIGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFFLPLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHVEFALIPVTAVKYTYTVIPALVMTWCLSYIERWVDSITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIAETGKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMAGISEPALYGVAIRLKRPLIASLISGFICGAVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFAVMALAVVLSFILTLLLGFEDIPVEEAAAQARKYQSVQPTVAKEVSLN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "ASL-MONOMER" "adenylosuccinate lyase" ["Ade", "PurB"] "MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGIKDLAVQYRDIPLLSRTHGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTVMRRYGIEKPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEKARLKAMTPANYIGRAITMVDELK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "ASNS-MONOMER" "asparagine—tRNA ligase" ["Tss", "Lcs", "AsnS", "AsnRS"] "MSVVPVADVLQGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDGSCFDPVQAVINNSLPNYNEDVLRLTTGCSVIVTGKVVASPGQGQQFEIQASKVEVAGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTLDLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGETYACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKAVLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENCGRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNASF" [] ["CCO-CYTOSOL"] 1 [] {} 1 "ASNSYNA-MONOMER" "asparagine synthetase A" ["AsnA"] "MKTAYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGCEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLAPFLPDQIHFVHSQELLSRYPDLDAKGRERAIAKDLGAVFLVGIGGKLSDGHRHDVRAPDYDDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIRVDADTLKHQLALTGDEDRLELEWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQCGVWPAAVRESVPSLL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -146,13 +146,13 @@ "ATOC-MONOMER" "DNA-binding transcriptional activator/ornithine decarboxylase inhibitor AtoC" ["AtoC", "AtoC response regulator", "AtoC transcriptional activator; Az protein inhibitor of ODC"] "MTAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGIDPADV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "ATOD-MONOMER" "acetyl-CoA:acetoacetyl-CoA transferase subunit α" ["AtoD"] "MKTKLMTLQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLESGVRDLTLIANDTAFVDTGIGPLIVNGRVRKVIASHIGTNPETGRRMISGEMDVVLVPQGTLIEQIRCGGAGLGGFLTPTGVGTVVEEGKQTLTLDGKTWLLERPLRADLALIRAHRCDTLGNLTYQLSARNFNPLIALAADITLVEPDELVETGELQPDHIVTPGAVIDHIIVSQESK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "ATOS-MONOMER" "sensor histidine kinase AtoS" ["AtoS"] "MHYMKWIYPRRLRNQMILMAILMVIVPTLTIGYIVETEGRSAVLSEKEKKLSAVVNLLNQALGDRYDLYIDLPREERIRALNAELAPITENITHAFPGIGAGYYNKMLDAIITYAPSALYQNNVGVTIAADHPGREVMRTNTPLVYSGRQVRGDILNSMLPIERNGEILGYIWANELTEDIRRQAWKMDVRIIIVLTAGLLISLLLIVLFSRRLSANIDIITDGLSTLAQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLFDNTQFYSPVLDTLEHGTEHVALEISFPGRDRTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPINPQGNQTV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"ATPA-MONOMER" "ATP synthase F1 complex subunit α" ["UncA", "PapA", "AtpA"] "MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGLADCMQGEMISLPGNRYAIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAAQTKIMKKLSGGIRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFAAERGYLADVELSKIGSFEAALLAYVDRDHAPLMQEINQTGGYNDEIEGKLKGILDSFKATQSW" ["CCO-MEMBRANE"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"ATPB-MONOMER" "ATP synthase Fo complex subunit a" ["UncB", "PapD", "AtpB", "protein 6", "chain A", "ATP synthase Fo complex - a subunit"] "MASENMTPQDYIGHHLNNLQLDLRTFSLVDPQNPPATFWTINIDSMFFSVVLGLLFLVLFRSVAKKATSGVPGKFQTAIELVIGFVNGSVKDMYHGKSKLIAPLALTIFVWVFLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFILILFYSIKMKGIGGFTKELTLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAGELIFILIAGLLPWWSQWILNVPWAIFHILIITLQAFIFMVLTIVYLSMASEEH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"ATPC-MONOMER" "ATP synthase F1 complex subunit ε" ["UncC", "PapG", "AtpC", "ATP synthase F1 complex - epsilon subunit"] "MAMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVIELTKKAM" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 1 [] {} 1 -"ATPD-MONOMER" "ATP synthase F1 complex subunit β" ["UncD", "PapB", "AtpD", "ATP synthase F1 complex - beta subunit"] "MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNERLVLEVQQQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIRGFKGIMEGEYDHLPEQAFYMVGSIEEAVEKAKKL" ["CCO-MEMBRANE"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 1 [] {} 1 -"ATPE-MONOMER" "ATP synthase Fo complex subunit c" ["UncE", "PapH", "AtpE", "dicyclohexylcarbodiimide-binding protein", "ATP synthase Fo complex - subunit c", "Fo-c"] "MENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAVA" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"ATPF-MONOMER" "ATP synthase Fo complex subunit b" ["UncF", "PapF", "AtpF", "B chain", "ATP synthase Fo complex - b subunit"] "MNLNATILGQAIAFVLFVLFCMKYVWPPLMAAIEKRQKEIADGLASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELRKQVAILAVAGAEKIIERSVDEAANSDIVDKLVAEL" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"ATPG-MONOMER" "ATP synthase F1 complex subunit γ" ["UncG", "PapC", "AtpG", "ATP synthase F1 complex - gamma subunit"] "MAGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV" ["CCO-MEMBRANE"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"ATPA-MONOMER" "ATP synthase F1 complex subunit α" ["UncA", "PapA", "AtpA"] "MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGLADCMQGEMISLPGNRYAIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAAQTKIMKKLSGGIRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFAAERGYLADVELSKIGSFEAALLAYVDRDHAPLMQEINQTGGYNDEIEGKLKGILDSFKATQSW" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"ATPB-MONOMER" "ATP synthase Fo complex subunit a" ["UncB", "PapD", "AtpB", "protein 6", "chain A", "ATP synthase Fo complex - a subunit"] "MASENMTPQDYIGHHLNNLQLDLRTFSLVDPQNPPATFWTINIDSMFFSVVLGLLFLVLFRSVAKKATSGVPGKFQTAIELVIGFVNGSVKDMYHGKSKLIAPLALTIFVWVFLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFILILFYSIKMKGIGGFTKELTLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAGELIFILIAGLLPWWSQWILNVPWAIFHILIITLQAFIFMVLTIVYLSMASEEH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"ATPC-MONOMER" "ATP synthase F1 complex subunit ε" ["UncC", "PapG", "AtpC", "ATP synthase F1 complex - epsilon subunit"] "MAMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVIELTKKAM" [] ["CCO-PM-BAC-NEG"] 1 [] {} 1 +"ATPD-MONOMER" "ATP synthase F1 complex subunit β" ["UncD", "PapB", "AtpD", "ATP synthase F1 complex - beta subunit"] "MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNERLVLEVQQQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIRGFKGIMEGEYDHLPEQAFYMVGSIEEAVEKAKKL" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG"] 1 [] {} 1 +"ATPE-MONOMER" "ATP synthase Fo complex subunit c" ["UncE", "PapH", "AtpE", "dicyclohexylcarbodiimide-binding protein", "ATP synthase Fo complex - subunit c", "Fo-c"] "MENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAVA" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"ATPF-MONOMER" "ATP synthase Fo complex subunit b" ["UncF", "PapF", "AtpF", "B chain", "ATP synthase Fo complex - b subunit"] "MNLNATILGQAIAFVLFVLFCMKYVWPPLMAAIEKRQKEIADGLASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELRKQVAILAVAGAEKIIERSVDEAANSDIVDKLVAEL" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"ATPG-MONOMER" "ATP synthase F1 complex subunit γ" ["UncG", "PapC", "AtpG", "ATP synthase F1 complex - gamma subunit"] "MAGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "ATPH-MONOMER" "ATP synthase F1 complex subunit δ" ["UncH", "PapE", "AtpH", "ATP synthase F1 complex - delta subunit"] "MSEFITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLSGALAPETLAESFIAVCGEQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQQLAKISAAMEKRLSRKVKLNCKIDKSVMAGVIIRAGDMVIDGSVRGRLERLADVLQS" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "ATPPHOSRIBOSTRANS-MONOMER" "ATP phosphoribosyltransferase" ["HisG"] "MTDNTRLRIAMQKSGRLSDDSRELLARCGIKINLHTQRLIAMAENMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFGGCRLSLATPVDEAWDGPLSLNGKRIATSYPHLLKRYLDQKGISFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMEESKQQLIDKLLTRIQGVIQARESKYIMMHAPTERLDEVIALLPGAERPTILPLAGDQQRVAMHMVSSETLFWETMEKLKALGASSILVLPIEKMME" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "B0070-MONOMER" null ["SetA", "YabM"] "MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREVGAQPFWIGLFYTVNAIAGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNALLFAFNRHYLTLITCGVLLASLANTAMPQLFALAREYADNSAREVVMFSSVMRAQLSLAWVIGPPLAFMLALNYGFTVMFSIAAGIFTLSLVLIAFMLPSVARVELPSENALSMQGGWQDSNVRMLFVASTLMWTCNTMYIIDMPLWISSELGLPDKLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMMVIAVAAGVLFYTGLIFFNSRMALMTLQLFNAVFIGIVAGIGMLWFQDLMPGRAGAATTLFTNSISTGVILAGVIQGAIAQSWGHFAVYWVIAVISVVALFLTAKVKDV" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -163,60 +163,60 @@ "B0511-MONOMER" "allantoin transporter" ["AllW", "AllP", "YbbW"] "MEHQRKLFQQRGYSEDLLPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLACLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENGGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFREQALGQTLGLVVAYILFAVAGVCIIAGASIHYGADTWNVLDIVQRWDSLFASFFAVLVILMTTISTNATGNIIPAGYQIAAIAPTKLTYKNGVLIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMMAHYFVVMRGQINLDELYTAPGDYKYYDNGFNLTAFSVTLVAVILSLGGKFIHFMEPLSRVSWFVGVIVAFAAYALLKKRTTAEKTGEQKTIG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B0612-MONOMER" null ["YbdS", "CitT", "CitT citrate DASS Transporter"] "MSLAKDNIWKLLAPLVVMGVMFLIPVPDGMPPQAWHYFAVFVAMIVGMILEPIPATAISFIAVTICVIGSNYLLFDAKELADPAFNAQKQALKWGLAGFSSTTVWLVFGAFIFALGYEVSGLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNTARTGGTVFPVIKNLPPLFKSFPNDPSARRIGGYLMWMMVISTSLSSSMFVTGAAPNVLGLEFVSKIAGIQISWLQWFLCFLPVGVILLIIAPWLSYVLYKPEITHSEEVATWAGDELKTMGALTRREWTLIGLVLLSLGLWVFGSEVINATAVGLLAVSLMLALHVVPWKDITRYNSAWNTLVNLATLVVMANGLTRSGFIDWFAGTMSTHLEGFSPNATVIVLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYATGPGVIIYGCGYVKSKDYWRLGAIFGVIYISMLLLVGWPILAMWN" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B0709-MONOMER" "dipeptide:H+ symporter DtpD" ["DtpD", "YbgH"] "MNKHASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYNDTHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITILFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALACVGLVLMIWLYQALKFRNRALALES" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"B0752-MONOMER" "Zn2+/Cd2+/Ni2+/Cu2+ exporter" ["ZitB", "YbgR", "ZitB zinc CDF transporter"] "MAHSHSHTSSHLPEDNNARRLLYAFGVTAGFMLVEVVGGFLSGSLALLADAGHMLTDTAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVVITILIVWEAIERFRTPRPVEGGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIWTGWTPADPILSILVSLLVLRSAWRLLKDSVNELLEGAPVSLDIAELKRRMCREIPEVRNVHHVHVWMVGEKPVMTLHVQVIPPHDHDALLDQIQHYLMDHYQIEHATIQMEYQPCHGPDCHLNEGVSGHSHHHH" ["CCO-PM-BAC-NEG"] ["CCO-VACUOLE", "CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"B0752-MONOMER" "Zn2+/Cd2+/Ni2+/Cu2+ exporter" ["ZitB", "YbgR", "ZitB zinc CDF transporter"] "MAHSHSHTSSHLPEDNNARRLLYAFGVTAGFMLVEVVGGFLSGSLALLADAGHMLTDTAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVVITILIVWEAIERFRTPRPVEGGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIWTGWTPADPILSILVSLLVLRSAWRLLKDSVNELLEGAPVSLDIAELKRRMCREIPEVRNVHHVHVWMVGEKPVMTLHVQVIPPHDHDALLDQIQHYLMDHYQIEHATIQMEYQPCHGPDCHLNEGVSGHSHHHH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B0770-MONOMER" "putative tricarboxylate transporter" ["YbhI"] "MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"B0899-MONOMER" "DUF883 domain-containing protein YgaM" ["YgaM"] "MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARSKAQALLKETRARMHGRTRVQQAARDAVGCADSFVRERPWCSVGTAAAVGIFIGALLSMRKS" ["CCO-CYTOSOL"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"B0899-MONOMER" "tail-anchored inner membrane protein YgaM" ["YgaM", "DUF883 domain-containing protein"] "MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARSKAQALLKETRARMHGRTRVQQAARDAVGCADSFVRERPWCSVGTAAAVGIFIGALLSMRKS" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "B1006-MONOMER" "pyrimidine:H+ symporter" ["YcdG", "RutG"] "MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRKLVDVPPPEVVHQEP" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B1065-MONOMER" "multidrug efflux pump MdtH" ["MdtH", "YceL"] "MSRVSQARNLGKYFLLIDNMLVVLGFFVVFPLISIRFVDQMGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMGIAHEPWLLWFSCLLSGLGGTLFDPPRSALVVKLIRPQQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLCAAFNAWLLPAWKLSTVRTPVREGMTRVMRDKRFVTYVLTLAGYYMLAVQVMLMLPIMVNDVAGAPSAVKWMYAIEACLSLTLLYPIARWSEKHFRLEHRLMAGLLIMSLSMMPVGMVSGLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLAIGGAIGYIGGGWLFDLGKSAHQPELPWMMLGIIGIFTFLALGWQFSQKRAARRLLERDA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B1296-MONOMER" null ["YcjJ", "PuuP"] "MAINSPLNIAAQPGKTRLRKSLKLWQVVMMGLAYLTPMTVFDTFGIVSGISDGHVPASYLLALAGVLFTAISYGKLVRQFPEAGSAYTYAQKSINPHVGFMVGWSSLLDYLFLPMINVLLAKIYLSALFPEVPPWVWVVTFVAILTAANLKSVNLVANFNTLFVLVQISIMVVFIFLVVQGLHKGEGVGTVWSLQPFISENAHLIPIITGATIVCFSFLGFDAVTTLSEETPDAARVIPKAIFLTAVYGGVIFIAASFFMQLFFPDISRFKDPDAALPEIALYVGGKLFQSIFLCTTFVNTLASGLASHASVSRLLYVMGRDNVFPERVFGYVHPKWRTPALNVIMVGIVALSALFFDLVTATALINFGALVAFTFVNLSVFNHFWRRKGMNKSWKDHFHYLLMPLVGALTVGVLWVNLESTSLTLGLVWASLGGAYLWYLIRRYRKVPLYDGDRTPVSET" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B1433-MONOMER" "putative transport protein YdcO" ["YdcO"] "MRLFSIPPPTLLAGFLAVLIGYASSAAIIWQAAIVAGATTAQISGWMTALGLAMGVSTLTLTLWYRVPVLTAWSTPGAALLVTGLQGLTLNEAIGVFIVTNALIVLCGITGLFARLMRIIPHSLAAAMLAGILLRFGLQAFASLDGQFTLCGSMLLVWLATKAVAPRYAVIAAMIIGIVIVIAQGDVVTTDVVFKPVLPTYITPDFSFAHSLSVALPLFLVTMASQNAPGIAAMKAAGYSAPVSPLIVFTGLLALVFSPFGVYSVGIAAITAAICQSPEAHPDKDQRWLAAAVAGIFYLLAGLFGSAITGMMAALPVSWIQMLAGLALLSTIGGSLYQALHNERERDAAVVAFLVTASGLTLVGIGSAFWGLIAGGVCYVVLNLIADRNRY" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B1543-MONOMER" "putative transporter YdfJ" ["YdfJ"] "MDFQLYSLGAALVFHEIFFPESSTAMALILAMGTYGAGYVARIVGAFIFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGVFAPILLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAAQPSRSL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B1596-MONOMER" "putative transporter YnfM" ["YzyC", "YnfM"] "MSRTTTVDGAPASDTDKQSISQPNQFIKRGTPQFMRVTLALFSAGLATFALLYCVQPILPVLSQEFGLTPANSSISLSISTAMLAIGLLFTGPLSDAIGRKPVMVTALLLASICTLLSTMMTSWHGILIMRALIGLSLSGVAAVGMTYLSEEIHPSFVAFSMGLYISGNSIGGMSGRLISGVFTDFFNWRIALAAIGCFALASALMFWKILPESRHFRPTSLRPKTLFINFRLHWRDRGLPLLFAEGFLLMGSFVTLFNYIGYRLMLSPWHVSQAVVGLLSLAYLTGTWSSPKAGTMTTRYGRGPVMLFSTGVMLFGLLMTLFSSLWLIFAGMLLFSAGFFAAHSVASSWIGPRAKRAKGQASSLYLFSYYLGSSIAGTLGGVFWHNYGWNGVGAFIALMLVIALLVGTRLHRRLHA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"B1599-MONOMER" "multidrug/spermidine efflux pump membrane subunit MdtI" ["MdtI", "YdgE", "Em109"] "MAQFEWVHAAWLALAIVLEIVANVFLKFSDGFRRKIFGLLSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMIMVKLA" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"B1600-MONOMER" "multidrug/spermidine efflux pump membrane subunit MdtJ" ["MdtJ", "YdgF", "Em121"] "MYIYWILLGLAIATEITGTLSMKWASVSEGNGGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRKARKPELEVNHGAV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"B1599-MONOMER" "multidrug/spermidine efflux pump membrane subunit MdtI" ["MdtI", "YdgE", "Em109"] "MAQFEWVHAAWLALAIVLEIVANVFLKFSDGFRRKIFGLLSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMIMVKLA" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"B1600-MONOMER" "multidrug/spermidine efflux pump membrane subunit MdtJ" ["MdtJ", "YdgF", "Em121"] "MYIYWILLGLAIATEITGTLSMKWASVSEGNGGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRKARKPELEVNHGAV" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "B1634-MONOMER" "dipeptide/tripeptide:H+ symporter DtpA" ["TppB", "YdgR", "DtpA", "TppB peptide POT transporter"] "MSTANQKPTESVSLNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMAAIAVGNGLFKANPSSLLSTCYEKNDPRLDGAFTMYYMSVNIGSFFSMIATPWLAAKYGWSVAFALSVVGLLITIVNFAFCQRWVKQYGSKPDFEPINYRNLLLTIIGVVALIAIATWLLHNQEVARMALGVVAFGIVVIFGKEAFAMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGLAVEPEQYQALNPFWIIIGSPILAAIYNKMGDTLPMPTKFAIGMVMCSGAFLILPLGAKFASDAGIVSVSWLVASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGANLIGGYVAGMMAVPDNVTDPLMSLEVYGRVFLQIGVATAVIAVLMLLTAPKLHRMTQDDAADKAAKAAVA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B1657-MONOMER" "putative transporter YdhP" ["YdhP"] "MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B1690-MONOMER" "putative exporter YdiM" ["YdiM"] "MKNPYFPTALGLYFNYLVHGMGVLLMSLNMASLETLWQTNAAGVSIVISSLGIGRLSVLLFAGLLSDRFGRRPFIMLGMCCYMAFFFGILQTNNIIIAYVFGFLAGMANSFLDAGTYPSLMEAFPRSPGTANILIKAFVSSGQFLLPLIISLLVWAELWFGWSFMIAAGIMFINALFLYRCTFPPHPGRRLPVIKKTTSSTEHRCSIIDLASYTLYGYISMATFYLVSQWLAQYGQFVAGMSYTMSIKLLSIYTVGSLLCVFITAPLIRNTVRPTTLLMLYTFISFIALFTVCLHPTFYVVIIFAFVIGFTSAGGVVQIGLTLMAERFPYAKGKATGIYYSAGSIATFTIPLITAHLSQRSIADIMWFDTAIAAIGFLLALFIGLRSRKKTRHHSLKENVAPGG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B1691-MONOMER" "putative transporter YdiN" ["YdiN"] "MSQNKAFSTPFILAVLCIYFSYFLHGISVITLAQNMSSLAEKFSTDNAGIAYLISGIGLGRLISILFFGVISDKFGRRAVILMAVIMYLLFFFGIPACPNLTLAYGLAVCVGIANSALDTGGYPALMECFPKASGSAVILVKAMVSFGQMFYPMLVSYMLLNNIWYGYGLIIPGILFVLITLMLLKSKFPSQLVDASVTNELPQMNSKPLVWLEGVSSVLFGVAAFSTFYVIVVWMPKYAMAFAGMSEAEALKTISYYSMGSLVCVFIFAALLKKMVRPIWANVFNSALATITAAIIYLYPSPLVCNAGAFVIGFSAAGGILQLGVSVMSEFFPKSKAKVTSIYMMMGGLANFVIPLITGYLSNIGLQYIIVLDFTFALLALITAIIVFIRYYRVFIIPENDVRFGERKFCTRLNTIKHRG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B1775-MONOMER" "putative transporter YdjK" ["YdjK"] "MEQITKPHCGARLDRLPDCRWHSSMFAIVAFGLLVCWSNAVGGLILAQLKALGWTDNSTTATFSAITTAGMFLGALVGGIIGDKTGRRNAFILYEAIHIASMVVGAFSPNMDFLIACRFVMGVGLGALLVTLFAGFTEYMPGRNRGTWSSRVSFIGNWSYPLCSLIAMGLTPLISAEWNWRVQLLIPAILSLIATALAWRYFPESPRWLESRGRYQEAEKVMRSIEEGVIRQTGKPLPPVVIADDGKAPQAVPYSALLTGVLLKRVILGSCVLIAMNVVQYTLINWLPTIFMTQGINLKDSIVLNTMSMFGAPFGIFIAMLVMDKIPRKTMGVGLLILIAVLGYIYSLQTSMLLITLIGFFLITFVYMYVCYASAVYVPEIWPTEAKLRGSGLANAVGRISGIAAPYAVAVLLSSYGVTGVFILLGAVSIIVAIAIATIGIETKGVSVESLSIDAVANK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B1791-MONOMER" "2-nitroimidazole exporter" ["NimT", "YeaN"] "MTCSTSLSGKNRIVLIAGILMIATTLRVTFTGAAPLLDTIRSAYSLTTAQTGLLTTLPLLAFALISPLAAPVARRFGMERSLFAALLLICAGIAIRSLPSPYLLFGGTAVIGGGIALGNVLLPGLIKRDFPHSVARLTGAYSLTMGAAAALGSAMVVPLALNGFGWQGALLMLMCFPLLALFLWLPQWRSQQHANLSTSRALHTRGIWRSPLAWQVTLFLGINSLVYYVIIGWLPAILISHGYSEAQAGSLHGLLQLATAAPGLLIPLFLHHVKDQRGIAAFVALMCAVGAVGLCFMPAHAITWTLLFGFGSGATMILGLTFIGLRASSAHQAAALSGMAQSVGYLLAACGPPLMGKIHDANGNWSVPLMGVAILSLLMAIFGLCAGRDKEIR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"B1828-MONOMER" "putative transporter YebQ" ["YebQ"] "MPKVQADGLPLPQRYGAILTIVIGISMAVLDGAIANVALPTIATDLHATPASSIWVVNAYQIAIVISLLSFSFLGDMFGYRRIYKCGLVVFLLSSLFCALSDSLQMLTLARVIQGFGGAALMSVNTALIRLIYPQRFLGRGMGINSFIVAVSSAAGPTIAAAILSIASWKWLFLINVPLGIIALLLAMRFLPPNGSRASKPRFDLPSAVMNALTFGLLITALSGFAQGQSLTLIAAELVVMVVVGIFFIRRQLSLPVPLLPVDLLRIPLFSLSICTSVCSFCAQMLAMVSLPFYLQTVLGRSEVETGLLLTPWPLATMVMAPLAGYLIERVHAGLLGALGLFIMAAGLFSLVLLPASPADINIIWPMILCGAGFGLFQSPNNHTIITSAPRERSGGASGMLGTARLLGQSSGAALVALMLNQFGDNGTHVSLMAAAILAVIAACVSGLRITQPRSRA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"B1828-MONOMER" "putative transporter YebQ" ["YebQ"] "MPKVQADGLPLPQRYGAILTIVIGISMAVLDGAIANVALPTIATDLHATPASSIWVVNAYQIAIVISLLSFSFLGDMFGYRRIYKCGLVVFLLSSLFCALSDSLQMLTLARVIQGFGGAALMSVNTALIRLIYPQRFLGRGMGINSFIVAVSSAAGPTIAAAILSIASWKWLFLINVPLGIIALLLAMRFLPPNGSRASKPRFDLPSAVMNALTFGLLITALSGFAQGQSLTLIAAELVVMVVVGIFFIRRQLSLPVPLLPVDLLRIPLFSLSICTSVCSFCAQMLAMVSLPFYLQTVLGRSEVETGLLLTPWPLATMVMAPLAGYLIERVHAGLLGALGLFIMAAGLFSLVLLPASPADINIIWPMILCGAGFGLFQSPNNHTIITSAPRERSGGASGMLGTARLLGQSSGAALVALMLNQFGDNGTHVSLMAAAILAVIAACVSGLRITQPRSRA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "B2075-MONOMER" "multidrug efflux pump RND permease subunit MdtB" ["YegN"] "MQVLPPSSTGGPSRLFIMRPVATTLLMVAILLAGIIGYRALPVSALPEVDYPTIQVVTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAATNLLPSDLPNPPVYSKVNPADPPIMTLAVTSTAMPMTQVEDMVETRVAQKISQISGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAITGANVNSAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAWANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDTQFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIAAYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDDRVQKVIARLQTAVDKVPGVDLFLQPTQDLTIDTQVSRTQYQFTLQATSLDALSTWVPQLMEKLQQLPQLSDVSSDWQDKGLVAYVNVDRDSASRLGISMADVDNALYNAFGQRLISTIYTQANQYRVVLEHNTENTPGLAALDTIRLTSSDGGVVPLSSIAKIEQRFAPLSINHLDQFPVTTISFNVPDNYSLGDAVQAIMDTEKTLNLPVDITTQFQGSTLAFQSALGSTVWLIVAAVVAMYIVLGILYESFIHPITILSTLPTAGVGALLALLIAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPREAIYQACLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGIGMVGGLIVSQVLTLFTTPVIYLLFDRLALWTKSRFARHEEEA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "B2076-MONOMER" "multidrug efflux pump RND permease subunit MdtC" ["YegO"] "MKFFALFIYRPVATILLSVAITLCGILGFRMLPVAPLPQVDFPVIIVSASLPGASPETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAAQSLLPSGMPSRPTYRKANPSDAPIMILTLTSDTYSQGELYDFASTQLAPTISQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAVSNANVRKPQGALEDGTHRWQIQTNDELKTAAEYQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGMTNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQGYGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQAMRGKLQDFMKIIRDDPAVDNVTGFTGGSRVNSGMMFITLKPRDERSETAQQIIDRLRVKLAKEPGANLFLMAVQDIRVGGRQSNASYQYTLLSDDLAALREWEPKIRKKLATLPELADVNSDQQDNGAEMNLVYDRDTMARLGIDVQAANSLLNNAFGQRQISTIYQPMNQYKVVMEVDPRYTQDISALEKMFVINNEGKAIPLSYFAKWQPANAPLSVNHQGLSAASTISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRHGNLTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSRKPKQTVTE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "B2077-MONOMER" "putative multidrug efflux pump MdtD" ["IceT", "YegB", "MdtD"] "MTDLPDSTRWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADKVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLLLMPNYTMQTRRFDLSGFLLLAVGMAVLTLALDGSKGTGLSPLTIAGLVAVGVVALVLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLSLVTLLFMTTALLGWYYVLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGSQHVSVDSGTTQTVFMYTWLSMALIIALPAFIFARVPNDTHQNVAISRRKRSAQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B2098-MONOMER" "putative transporter YegT" ["YegT"] "MKTTAKLSFMMFVEWFIWGAWFVPLWLWLSKSGFSAGEIGWSYACTAIAAILSPILVGSITDRFFSAQKVLAVLMFAGALLMYFAAQQTTFAGFFPLLLAYSLTYMPTIALTNSIAFANVPDVERDFPRIRVMGTIGWIASGLACGFLPQILGYADISPTNIPLLITAGSSALLGVFAFFLPDTPPKSTGKMDIKVMLGLDALILLRDKNFLVFFFCSFLFAMPLAFYYIFANGYLTEVGMKNATGWMTLGQFSEIFFMLALPFFTKRFGIKKVLLLGLVTAAIRYGFFIYGSADEYFTYALLFLGILLHGVSYDFYYVTAYIYVDKKAPVHMRTAAQGLITLCCQGFGSLLGYRLGGVMMEKMFAYQEPVNGLTFNWSGMWTFGAVMIAIIAVLFMIFFRESDNEITAIKVDDRDIALTQGEVK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B2170-MONOMER" null ["YeiO", "SetB", "SetB MFS transporter"] "MHNSPAVSSAKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATGTIEAPRRNRRDTLLLFVICTLMWGSNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVGGVCFYAGMLMAHSPVILLGLQLLNAIFIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSVAGIVAEIWNYHAVFWFAMVMIIATLFCLLRIKDV" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"B2246-MONOMER" "putative transporter YfaV" ["YfaV", "RhmT"] "MSTALLDAVVKKNRVRLIPFMLALYVLAFLDRSNIGFAKQTYQIDTGLSNEAYALGAGIFFVVYAFLGVPANLLMRKLGARTWIGTTTLLWGFLSAAMAWADTEAKFLIVRTLLRAAEAGFFPGMIYLTSQWFPQRNRASIMGLFYMGAPLALTLGSPLSGALLEMHGFMGHPGWFWMFVIEGLLAVGAGVFTFFWLDDTPEQARFLSKQEKTLLINQLASEEQQKVTSRLSDALRNGRVWQLAIIYLTIQVAVYGLIFFLPTQVAALLGTKVGFTASVVTAIPWVAALFGTWLIPRYSDKTGERRNVAALTLLAAGIGIGLSGLLSPVMAIVALCVAAIGFIAVQPVFWTMPTQLLSGTALAAGIGFVNLFGAVGGFIAPILRVKAETLFASDAAGLLTLAAVAVIGSLIIFTLRVNRTVAQTDVAHH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"B2246-MONOMER" "putative transporter YfaV" ["YfaV", "RhmT"] "MSTALLDAVVKKNRVRLIPFMLALYVLAFLDRSNIGFAKQTYQIDTGLSNEAYALGAGIFFVVYAFLGVPANLLMRKLGARTWIGTTTLLWGFLSAAMAWADTEAKFLIVRTLLRAAEAGFFPGMIYLTSQWFPQRNRASIMGLFYMGAPLALTLGSPLSGALLEMHGFMGHPGWFWMFVIEGLLAVGAGVFTFFWLDDTPEQARFLSKQEKTLLINQLASEEQQKVTSRLSDALRNGRVWQLAIIYLTIQVAVYGLIFFLPTQVAALLGTKVGFTASVVTAIPWVAALFGTWLIPRYSDKTGERRNVAALTLLAAGIGIGLSGLLSPVMAIVALCVAAIGFIAVQPVFWTMPTQLLSGTALAAGIGFVNLFGAVGGFIAPILRVKAETLFASDAAGLLTLAAVAVIGSLIIFTLRVNRTVAQTDVAHH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "B2322-MONOMER" "putative transporter YfcJ" ["YfcJ"] "MTAVSQTETRSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHELGYGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGGALLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGIVGPKHSGKVMSWNGMAIYGALAVGAPLGLLIHSHYGFAALAITTMVLPVLAWACNGTVRKVPALAGERPSLWSVVGLIWKPGLGLALQGVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVVMRVMFGWMPDRFGGVKVAIVSLLVETVGLLLLWQAPGAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIALGVSGPLAGMLATTFGYSSVFLAGAISAVLGIIVTILSFRRG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B2372-MONOMER" "putative transport protein YfdV" ["YfdV"] "MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKKNSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRLVS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B2740-MONOMER" "putative transporter YgbN" ["YgbN"] "MSTITLLCIALAGVIMLLLLVIKAKVQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFSRKLGDKRTIAALTLAAFFLGIPVFFDVGFIILAPIIYGFAKVAKISPLKFGLPVAGIMLTVHVAVPPHPGPVAAAGLLHADIGWLTIIGIAISIPVGVVGYFAAKIINKRQYAMSVEVLEQMQLAPASEEGATKLSDKINPPGVALVTSLIVIPIAIIMAGTVSATLMPPSHPLLGTLQLIGSPMVALMIALVLAFWLLALRRGWSLQHTSDIMGSALPTAAVVILVTGAGGVFGKVLVESGVGKALANMLQMIDLPLLPAAFIISLALRASQGSATVAILTTGGLLSEAVMGLNPIQCVLVTLAACFGGLGASHINDSGFWIVTKYLGLSVADGLKTWTVLTTILGFTGFLITWCVWAVI" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B2771-MONOMER" "putative transporter YgcS" ["YgcS"] "MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"B2775-MONOMER" "putative transport protein YqcE" ["YqcF", "YqcE"] "MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQIAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLTLTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALGMVIVFTFLLFQKIRTADSAPAMASSK" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"B2775-MONOMER" "putative transport protein YqcE" ["YqcF", "YqcE"] "MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQIAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLTLTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALGMVIVFTFLLFQKIRTADSAPAMASSK" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "B2789-MONOMER" "galactarate/D-glucarate transporter GudP" ["GudP", "GudT", "YgcZ"] "MSSLSQAASSVEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGSEMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWSMFTLLQGFVDIFSGFGIIVALFTLRFLVGLAEAPSFPGNSRIVAAWFPAQERGTAVSIFNSAQYFATVIFAPIMGWLTHEVGWSHVFFFMGGLGIVISFIWLKVIHEPNQHPGVNKKELEYIAAGGALINMDQQNTKVKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFPVYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTGSLNIARKTPIVMGMLLSMVMVFCNYVNVEWMIIGFMALAFFGKGIGALGWAVMADTAPKEISGLSGGLFNMFGNISGIVTPIAIGYIVGTTGSFNGALIYVGVHALIAVLSYLVLVGDIKRIELKPVAGQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"B2845-MONOMER" "putative transporter YqeG" ["YqeG"] "MSNIWSKEETLWSFALYGTAVGAGTLFLPIQLGSAGAVVLFITALVAWPLTYWPHKALCQFILSSKTSAGEGITGAVTHYYGKKIGNLITTLYFIAFFVVVLIYAVAITNSLTEQLAKHMVIDLRIRMLVSLGVVLILNLIFLMGRHATIRVMGFLVFPLIAYFLFLSIYLVGSWQPDLLTTQVEFNQNTLHQIWISIPVMVFAFSHTPIISTFAIDRREKYGEHAMDKCKKIMKVAYLIICISVLFFVFSCLLSIPPSYIEAAKEEGVTILSALSMLPNAPAWLSISGIIVAVVAMSKSFLGTYFGVIEGATEVVKTTLQQVGVKKSRAFNRALSIMLVSLITFIVCCINPNAISMIYAISGPLIAMILFIMPTLSTYLIPALKPWRSIGNLITLIVGILCVSVMFFS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"B2975-MONOMER" "glycolate/lactate:H+ symporter GlcA" ["GlcA", "YghK"] "MVTWTQMYMPMGGLGLSALVALIPIIFFFVALAVLRLKGHVAGAITLILSILIAIFAFKMPIDMAFAAAGYGFIYGLWPIAWIIVAAVFLYKLTVASGQFDIIRSSVISITDDQRLQVLLIGFSFGALLEGAAGFGAPVAITGALLVGLGFKPLYAAGLCLIANTAPVAFGALGVPILVAGQVTGIDPFHIGAMAGRQLPFLSVLVPFWLVAMMDGWKGVKETWPAALVAGGSFAVTQFFTSNYIGPELPDITSALVSIVSLALFLKVWRPKNTETAISMGQSAGAMVVNKPSSGGPVPSEYSLGQIIRAWSPFLILTVLVTIWTMKPFKALFAPGGAFYSLVINFQIPHLHQQVLKAAPIVAQPTPMDAVFKFDPLSAGGTAIFIAAIISIFILGVGIKKGIGVFAETLISLKWPILSIGMVLAFAFVTNYSGMSTTLALVLAGTGVMFPFFSPFLGWLGVFLTGSDTSSNALFGSLQSTTAQQINVSDTLLVAANTSGGVTGKMISPQSIAVACAATGMVGRESELFRYTVKHSLIFASVIGIITLLQAYVFTGMLVS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"B3659-MONOMER" "putative arabinose exporter" ["SetC", "YicK", "YicK MFS Transporter"] "MQKTATTPSKILDLTAAAFLLVAFLTGIAGALQTPTLSIFLADELKARPIMVGFFFTGSAIMGILVSQFLARHSDKQGDRKLLILLCCLFGVLACTLFAWNRNYFILLSTGVLLSSFASTANPQMFALAREHADRTGRETVMFSTFLRAQISLAWVIGPPLAYELAMGFSFKVMYLTAAIAFVVCGLIVWLFLPSIQRNIPVVTQPVEILPSTHRKRDTRLLFVVCSMMWAANNLYMINMPLFIIDELHLTDKLTGEMIGIAAGLEIPMMLIAGYYMKRIGKRLLMLIAIVSGMCFYASVLMATTPAVELELQILNAIFLGILCGIGMLYFQDLMPEKIGSATTLYANTSRVGWIIAGSVDGIMVEIWSYHALFWLAIGMLGIAMICLLFIKDI" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"B2845-MONOMER" "putative transporter YqeG" ["YqeG"] "MSNIWSKEETLWSFALYGTAVGAGTLFLPIQLGSAGAVVLFITALVAWPLTYWPHKALCQFILSSKTSAGEGITGAVTHYYGKKIGNLITTLYFIAFFVVVLIYAVAITNSLTEQLAKHMVIDLRIRMLVSLGVVLILNLIFLMGRHATIRVMGFLVFPLIAYFLFLSIYLVGSWQPDLLTTQVEFNQNTLHQIWISIPVMVFAFSHTPIISTFAIDRREKYGEHAMDKCKKIMKVAYLIICISVLFFVFSCLLSIPPSYIEAAKEEGVTILSALSMLPNAPAWLSISGIIVAVVAMSKSFLGTYFGVIEGATEVVKTTLQQVGVKKSRAFNRALSIMLVSLITFIVCCINPNAISMIYAISGPLIAMILFIMPTLSTYLIPALKPWRSIGNLITLIVGILCVSVMFFS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"B2975-MONOMER" "glycolate/lactate:H+ symporter GlcA" ["GlcA", "YghK"] "MVTWTQMYMPMGGLGLSALVALIPIIFFFVALAVLRLKGHVAGAITLILSILIAIFAFKMPIDMAFAAAGYGFIYGLWPIAWIIVAAVFLYKLTVASGQFDIIRSSVISITDDQRLQVLLIGFSFGALLEGAAGFGAPVAITGALLVGLGFKPLYAAGLCLIANTAPVAFGALGVPILVAGQVTGIDPFHIGAMAGRQLPFLSVLVPFWLVAMMDGWKGVKETWPAALVAGGSFAVTQFFTSNYIGPELPDITSALVSIVSLALFLKVWRPKNTETAISMGQSAGAMVVNKPSSGGPVPSEYSLGQIIRAWSPFLILTVLVTIWTMKPFKALFAPGGAFYSLVINFQIPHLHQQVLKAAPIVAQPTPMDAVFKFDPLSAGGTAIFIAAIISIFILGVGIKKGIGVFAETLISLKWPILSIGMVLAFAFVTNYSGMSTTLALVLAGTGVMFPFFSPFLGWLGVFLTGSDTSSNALFGSLQSTTAQQINVSDTLLVAANTSGGVTGKMISPQSIAVACAATGMVGRESELFRYTVKHSLIFASVIGIITLLQAYVFTGMLVS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"B3659-MONOMER" "putative exporter SetC" ["SetC", "YicK", "YicK MFS Transporter"] "MQKTATTPSKILDLTAAAFLLVAFLTGIAGALQTPTLSIFLADELKARPIMVGFFFTGSAIMGILVSQFLARHSDKQGDRKLLILLCCLFGVLACTLFAWNRNYFILLSTGVLLSSFASTANPQMFALAREHADRTGRETVMFSTFLRAQISLAWVIGPPLAYELAMGFSFKVMYLTAAIAFVVCGLIVWLFLPSIQRNIPVVTQPVEILPSTHRKRDTRLLFVVCSMMWAANNLYMINMPLFIIDELHLTDKLTGEMIGIAAGLEIPMMLIAGYYMKRIGKRLLMLIAIVSGMCFYASVLMATTPAVELELQILNAIFLGILCGIGMLYFQDLMPEKIGSATTLYANTSRVGWIIAGSVDGIMVEIWSYHALFWLAIGMLGIAMICLLFIKDI" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "B4141-MONOMER" "L-methionine/branched chain amino acid exporter" ["YjeH"] "MSGLKQELGLAQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPVLIILVFPIAIVFAILGRHYPSAGGVAHFVGMAFGSRLERVTGWLFLSVIPVGLPAALQIAAGFGQAMFGWHSWQLLLAELGTLALVWYIGTRGASSSANLQTVIAGLIVALIVAIWWAGDIKPANIPFPAPGNIELTGLFAALSVMFWCFVGLEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWGCTVVVLHFDAYGEKMAAAASLPKIVVQLFGVGALWIACVIGYLACFASLNIYIQSFARLVWSQAQHNPDHYLARLSSRHIPNNALNAVLGCCVVSTLVIHALEINLDALIIYANGIFIMIYLLCMLAGCKLLQGRYRLLAVVGGLLCVLLLAMVGWKSLYALIMLAGLWLLLPKRKTPENGITT" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "BADH-MONOMER" "betaine aldehyde dehydrogenase" ["BetB"] "MSRMAEQQLYIHGGYTSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIWASMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGSQIPLRETSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTEHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANFFSSGQVCTNGTRVFVPAKCKAAFEQKILARVERIRAGDVFDPQTNFGPLVSFPHRDNVLRYIAKGKEEGARVLCGGDVLKGDGFDNGAWVAPTVFTDCSDDMTIVREEIFGPVMSILTYESEDEVIRRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSIQVEMAKFQSIF" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"K+": 2} 1 "BAER-MONOMER" "DNA-binding transcriptional activator BaeR" ["BaeR", "BaeR response regulator"] "MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "BAES-MONOMER" "sensor histidine kinase BaeS" ["BaeS"] "MKFWRPGITGKLFLAIFATCIVLLISMHWAVRISFERGFIDYIKHGNEQRLQLLSDALGEQYAQHGNWRFLRNNDRFVFQILRSFEHDNSEDKPGPGMPPHGWRTQFWVVDQNNKVLVGPRAPIPPDGTRRPILVNGAEVGAVIASPVERLTRNTDINFDKQQRQTSWLIVALATLLAALATFLLARGLLAPVKRLVDGTHKLAAGDFTTRVTPTSEDELGKLAQDFNQLASTLEKNQQMRRDFMADISHELRTPLAVLRGELEAIQDGVRKFTPETVASLQAEVGTLTKLVDDLHQLSMSDEGALAYQKAPVDLIPLLEVAGGAFRERFASRGLKLQFSLPDSITVFGDRDRLMQLFNNLLENSLRYTDSGGSLQISAGQRDKTVRLTFADSAPGVSDDQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLERDLQREV" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 "BARA-MONOMER" "sensor histidine kinase BarA" ["AirS", "BarA"] "MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "BASR-MONOMER" "DNA-binding transcriptional dual regulator BasR" ["PmrA", "BasR", "BasR response regulator"] "MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"BASS-MONOMER" "sensor histidine kinase BasS" ["DgkR", "BasS", "PmrB"] "MHFLRRPISLRQRLILTIGAILLVFELISVFWLWHESTEQIQLFEQALRDNRNNDRHIMREIREAVASLIVPGVFMVSLTLFICYQAVRRITRPLAELQKELEARTADNLTPIAIHSATLEIEAVVSALNDLVSRLTSTLDNERLFTADVAHELRTPLAGVRLHLELLAKTHHIDVAPLVARLDQMMESVSQLLQLARAGQSFSSGNYQHVKLLEDVILPSYDELSTMLDQRQQTLLLPESAADITVQGDATLLRMLLRNLVENAHRYSPQGSNIMIKLQEDDGAVMAVEDEGPGIDESKCGELSKAFVRMDSRYGGIGLGLSIVSRITQLHHGQFFLQNRQETSGTRAWVRLKKDQYVANQI" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"BASS-MONOMER" "sensor histidine kinase BasS" ["DgkR", "BasS", "PmrB"] "MHFLRRPISLRQRLILTIGAILLVFELISVFWLWHESTEQIQLFEQALRDNRNNDRHIMREIREAVASLIVPGVFMVSLTLFICYQAVRRITRPLAELQKELEARTADNLTPIAIHSATLEIEAVVSALNDLVSRLTSTLDNERLFTADVAHELRTPLAGVRLHLELLAKTHHIDVAPLVARLDQMMESVSQLLQLARAGQSFSSGNYQHVKLLEDVILPSYDELSTMLDQRQQTLLLPESAADITVQGDATLLRMLLRNLVENAHRYSPQGSNIMIKLQEDDGAVMAVEDEGPGIDESKCGELSKAFVRMDSRYGGIGLGLSIVSRITQLHHGQFFLQNRQETSGTRAWVRLKKDQYVANQI" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 "BCCP-MONOMER" "biotin carboxyl carrier protein" ["FabE", "AccB", "apo-[acetyl-CoA:carbon-dioxide ligase (ADP forming)]", "BCCP"] "MDIRKIKKLIELVEESGISELEISEGEESVRISRAAPAASFPVMQQAYAAPMMQQPAQSNAAAPATVPSMEAPAAAEISGHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "BCR-MONOMER" "multidrug efflux pump Bcr" ["Sur", "SuxA", "BicR", "BicA", "Bcr"] "MTTRQHSSFAIVFILGLLAMLMPLSIDMYLPALPVISAQFGVPAGSTQMTLSTYILGFALGQLIYGPMADSFGRKPVVLGGTLVFAAAAVACALANTIDQLIVMRFFHGLAAAAASVVINALMRDIYPKEEFSRMMSFVMLVTTIAPLMAPIVGGWVLVWLSWHYIFWILALAAILASAMIFFLIKETLPPERRQPFHIRTTIGNFAALFRHKRVLSYMLASGFSFAGMFSFLSAGPFVYIEINHVAPENFGYYFALNIVFLFVMTIFNSRFVRRIGALNMFRSGLWIQFIMAAWMVISALLGLGFWSLVVGVAAFVGCVSMVSSNAMAVILDEFPHMAGTASSLAGTFRFGIGAIVGALLSLATFNSAWPMIWSIAFCATSSILFCLYASRPKKR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"BETA-GLUCURONID-MONOMER" "β-glucuronidase" ["GusA", "GurA", "UidA"] "MLRPVETPTREIKKLDGLWAFSLDRENCGIDQRWWESALQESRAIAVPGSFNDQFADADIRNYAGNVWYQREVFIPKGWAGQRIVLRFDAVTHYGKVWVNNQEVMEHQGGYTPFEADVTPYVIAGKSVRITVCVNNELNWQTIPPGMVITDENGKKKQSYFHDFFNYAGIHRSVMLYTTPNTWVDDITVVTHVAQDCNHASVDWQVVANGDVSVELRDADQQVVATGQGTSGTLQVVNPHLWQPGEGYLYELCVTAKSQTECDIYPLRVGIRSVAVKGEQFLINHKPFYFTGFGRHEDADLRGKGFDNVLMVHDHALMDWIGANSYRTSHYPYAEEMLDWADEHGIVVIDETAAVGFNLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAIKELIARDKNHPSVVMWSIANEPDTRPQGAREYFAPLAEATRKLDPTRPITCVNVMFCDAHTDTISDLFDVLCLNRYYGWYVQSGDLETAEKVLEKELLAWQEKLHQPIIITEYGVDTLAGLHSMYTDMWSEEYQCAWLDMYHRVFDRVSAVVGEQVWNFADFATSQGILRVGGNKKGIFTRDRKPKSAAFLLQKRWTGMNFGEKPQQGGKQ" ["CCO-CYTOSOL"] ["CCO-EXTRACELLULAR", "CCO-CYTOSOL"] 0 [] {} 1 +"BETA-GLUCURONID-MONOMER" "β-glucuronidase" ["GusA", "GurA", "UidA"] "MLRPVETPTREIKKLDGLWAFSLDRENCGIDQRWWESALQESRAIAVPGSFNDQFADADIRNYAGNVWYQREVFIPKGWAGQRIVLRFDAVTHYGKVWVNNQEVMEHQGGYTPFEADVTPYVIAGKSVRITVCVNNELNWQTIPPGMVITDENGKKKQSYFHDFFNYAGIHRSVMLYTTPNTWVDDITVVTHVAQDCNHASVDWQVVANGDVSVELRDADQQVVATGQGTSGTLQVVNPHLWQPGEGYLYELCVTAKSQTECDIYPLRVGIRSVAVKGEQFLINHKPFYFTGFGRHEDADLRGKGFDNVLMVHDHALMDWIGANSYRTSHYPYAEEMLDWADEHGIVVIDETAAVGFNLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAIKELIARDKNHPSVVMWSIANEPDTRPQGAREYFAPLAEATRKLDPTRPITCVNVMFCDAHTDTISDLFDVLCLNRYYGWYVQSGDLETAEKVLEKELLAWQEKLHQPIIITEYGVDTLAGLHSMYTDMWSEEYQCAWLDMYHRVFDRVSAVVGEQVWNFADFATSQGILRVGGNKKGIFTRDRKPKSAAFLLQKRWTGMNFGEKPQQGGKQ" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "BETACOMP-MONOMER" "sulfite reductase, hemoprotein subunit" ["CysI", "SiR-HP", "β subunit"] "MSEKHPGPLVVEGKLTDAERMKHESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD" [] [] 1 [] {"CPD-7": 1, "SIROHEME": 1} 1 "BETAGALACTOSID-MONOMER" "β-galactosidase" ["LacZ"] "MTMITDSLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWRFAWFPAPEAVPESWLECDLPEADTVVVPSNWQMHGYDAPIYTNVTYPITVNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLPSEFDLSAFLRAGENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISDFHVATRFNDDFSRAVLEAEVQMCGELRDYLRVTVSLWQGETQVASGTAPFGGEIIDERGGYADRVTLRLNVENPKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIETHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLILCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGDTPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPESAGQLWLTVRVVQPNATAWSEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQFNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSEATRIDPNAWVERWKAAGHYQAEAALLQCTADTLADAVLITTAHAWQHQGKTLFISRKTYRIDGSGQMAITVDVEVASDTPHPARIGLNCQLAQVAERVNWLGLGPQENYPDRLTAACFDRWDLPLSDMYTPYVFPSENGLRCGTRELNYGPHQWRGDFQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRYHYQLVWCQK" [] [] 1 [] {"MG+2": 2, "NA+": 1} 1 "BETT-MONOMER" null ["BetT"] "MTDLSHSREKDKINPVVFYTSAGLILLFSLTTILFRDFSALWIGRTLDWVSKTFGWYYLLAATLYIVFVVCIACSRFGSVKLGPEQSKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYRYNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPDSMAAKAALIALSVIIATISVTSGVDKGIRVLSELNVALALGLILFVLFMGDTSFLLNALVLNVGDYVNRFMGMTLNSFAFDRPVEWMNNWTLFFWAWWVAWSPFVGLFLARISRGRTIRQFVLGTLIIPFTFTLLWLSVFGNSALYEIIHGGAAFAEEAMVHPERGFYSLLAQYPAFTFSASVATITGLLFYVTSADSGALVLGNFTSQLKDINSDAPGWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMGLPFSFVIFFVMAGLYKSLKVEDYRRESANRDTAPRPLGLQDRLSWKKRLSRLMNYPGTRYTKQMMETVCYPAMEEVAQELRLRGAYVELKSLPPEEGQQLGHLDLLVHMGEEQNFVYQIWPQQYSVPGFTYRARSGKSTYYRLETFLLEGSQGNDLMDYSKEQVITDILDQYERHLNFIHLHREAPGHSVMFPDA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"BGLF-MONOMER" "β-glucoside specific PTS enzyme II / BglG kinase / BglG phosphatase" ["BglS", "BglF"] "MTELARKIVAGVGGADNIVSLMHCATRLRFKLKDESKAQAEVLKKTPGIIMVVESGGQFQVVIGNHVADVFLAVNSVAGLDEKAQQAPENDDKGNLLNRFVYVISGIFTPLIGLMAATGILKGMLALALTFQWTTEQSGTYLILFSASDALFWFFPIILGYTAGKRFGGNPFTAMVIGGALVHPLILTAFENGQKADALGLDFLGIPVTLLNYSSSVIPIIFSAWLCSILERRLNAWLPSAIKNFFTPLLCLMVITPVTFLLVGPLSTWISELIAAGYLWLYQAVPAFAGAVMGGFWQIFVMFGLHWGLVPLCINNFTVLGYDTMIPLLMPAIMAQVGAALGVFLCERDAQKKVVAGSAALTSLFGITEPAVYGVNLPRKYPFVIACISGALGATIIGYAQTKVYSFGLPSIFTFMQTIPSTGIDFTVWASVIGGVIAIGCAFVGTVMLHFITAKRQPAQGAPQEKTPEVITPPEQGGICSPMTGEIVPLIHVADTTFASGLLGKGIAILPSVGEVRSPVAGRIASLFATLHAIGIESDDGVEILIHVGIDTVKLDGKFFSAHVNVGDKVNTGDRLISFDIPAIREAGFDLTTPVLISNSDDFTDVLPHGTAQISAGEPLLSIIR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"BGLF-MONOMER" "cryptic β-glucoside specific PTS enzyme II / BglG kinase / BglG phosphatase" ["BglS", "BglF"] "MTELARKIVAGVGGADNIVSLMHCATRLRFKLKDESKAQAEVLKKTPGIIMVVESGGQFQVVIGNHVADVFLAVNSVAGLDEKAQQAPENDDKGNLLNRFVYVISGIFTPLIGLMAATGILKGMLALALTFQWTTEQSGTYLILFSASDALFWFFPIILGYTAGKRFGGNPFTAMVIGGALVHPLILTAFENGQKADALGLDFLGIPVTLLNYSSSVIPIIFSAWLCSILERRLNAWLPSAIKNFFTPLLCLMVITPVTFLLVGPLSTWISELIAAGYLWLYQAVPAFAGAVMGGFWQIFVMFGLHWGLVPLCINNFTVLGYDTMIPLLMPAIMAQVGAALGVFLCERDAQKKVVAGSAALTSLFGITEPAVYGVNLPRKYPFVIACISGALGATIIGYAQTKVYSFGLPSIFTFMQTIPSTGIDFTVWASVIGGVIAIGCAFVGTVMLHFITAKRQPAQGAPQEKTPEVITPPEQGGICSPMTGEIVPLIHVADTTFASGLLGKGIAILPSVGEVRSPVAGRIASLFATLHAIGIESDDGVEILIHVGIDTVKLDGKFFSAHVNVGDKVNTGDRLISFDIPAIREAGFDLTTPVLISNSDDFTDVLPHGTAQISAGEPLLSIIR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "BIOTIN-CARBOXYL-MONOMER" "biotin carboxylase" ["AccC", "FabG"] "MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDPNTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEKKLGLQEK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 2, "MN+2": 2} 1 "BIOTIN-SYN-MONOMER" "biotin synthase" ["BioB"] "MAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMTPDTDEYYNAAAL" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1, "CPD-6": 1} 1 "BIOTINLIG-MONOMER" "DNA-binding transcriptional repressor/biotin-[acetyl-CoA-carboxylase] ligase BirA" ["BirA", "BioR", "DhbB", "biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor"] "MKDNTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSLPEPIQLLNAKQILGQLDGGSVAVLPVIDSTNQYLLDRIGELKSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEVLRKLGADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPVKLIIGDKEIFGISRGIDKQGALLLEQDGIIKPWMGGEISLRSAEK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "BRANCHED-CHAINAMINOTRANSFER-MONOMER" "branched-chain-amino-acid aminotransferase" ["IlvE"] "MTTKKADYIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQAFFGLFTGETEDKWGWLDQVNQ" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "BRNQ-MONOMER" "branched chain amino acid transporter BrnQ" ["HrbA", "LIV-II", "BrnQ", "BrnQ branched chain amino acid LIVCS transporter"] "MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDGIKASAFSDILPSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSAH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "BTUC-MONOMER" "vitamin B12 ABC transporter membrane subunit" [] "MLTLARQQQRQNIRWLLCLSVLMLLALLLSLCAGEQWISPGDWFTPRGELFVWQIRLPRTLAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLCAIAGALIITLILLRFARRHLSTSRLLLAGVALGIICSALMTWAIYFSTSVDLRQLMYWMMGGFGGVDWRQSWLMLALIPVLLWICCQSRPMNMLALGEISARQLGLPLWFWRNVLVAATGWMVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGASALLLADIVARLALAAAELPIGVVTATLGAPVFIWLLLKAGR" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"BTUD-MONOMER" "vitamin B12 ABC transporter ATP binding subunit" [] "MSIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFRRLDIEGHRMLISTI" ["CCO-MEMBRANE"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"BTUD-MONOMER" "vitamin B12 ABC transporter ATP binding subunit" [] "MSIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFRRLDIEGHRMLISTI" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "BTUE-MONOMER" "thioredoxin/glutathione peroxidase BtuE" ["BtuE"] "MQDSILTTVVKDIDGEVTTLEKFAGNVLLIVNVASKCGLTPQYEQLENIQKAWVDRGFMVLGFPCNQFLEQEPGSDEEIKTYCTTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGKVIQRFSPDMTPEDPIVMESIKLALAK" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 "CADB-MONOMER" "lysine:cadaverine antiporter" ["CadB"] "MSSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGGIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGEISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPVPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIPVVMTAIVGWHWFDAATYAANWNTADTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIVYIAATQVLSGMYPSSVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFPKVYGEVDSNGIPKKGLLLAAVKMTALMILITLMNSAGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFEGVNIRNFVSLICSVLGCVFCFIALMGASSFELAGTFIVSLIILMFYARKMHERQSHSMDNHTASNAH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 "CAIC-MONOMER" "carnitine—CoA ligase" ["YaaM", "CaiC"] "MDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLCEESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATVTECIPMMIRTLMVQPPSANDQQHRLREVMFYLNLSEQEKDAFCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFCYEAEIRDDHNRPLPAGEIGEICIKGIPGKTIFKEYFLNPQATAKVLEADGWLHTGDTGYRDEEDFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -230,10 +230,10 @@ "CARDIOLIPSYN-MONOMER" "cardiolipin synthase A" ["ClsA", "YciJ", "Nov", "Cls", "cardiolipin synthase 1"] "MTTVYTLVSWLAILGYWLLIAGVTLRILMKRRAVPSAMAWLLIIYILPLVGIIAYLAVGELHLGKRRAERARAMWPSTAKWLNDLKACKHIFAEENSSVAAPLFKLCERRQGIAGVKGNQLQLMTESDDVMQALIRDIQLARHNIEMVFYIWQPGGMADQVAESLMAAARRGIHCRLMLDSAGSVAFFRSPWPELMRNAGIEVVEALKVNLMRVFLRRMDLRQHRKMIMIDNYIAYTGSMNMVDPRYFKQDAGVGQWIDLMARMEGPIATAMGIIYSCDWEIETGKRILPPPPDVNIMPFEQASGHTIHTIASGPGFPEDLIHQALLTAAYSAREYLIMTTPYFVPSDDLLHAICTAAQRGVDVSIILPRKNDSMLVGWASRAFFTELLAAGVKIYQFEGGLLHTKSVLVDGELSLVGTVNLDMRSLWLNFEITLAIDDKGFGADLAAVQDDYISRSRLLDARLWLKRPLWQRVAERLFYFFSPLL" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 "CARNDEHYDRA-MONOMER" "γ-butyrobetainyl-CoA:carnitine CoA transferase" ["YaaN", "CaiB"] "MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYKCADGYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLATHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED" [] ["CCO-CYTOSOL"] 0 [] {} 1 "CARNRACE-MONOMER" null ["YaaL", "CaiD"] "MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR" [] ["CCO-CYTOSOL"] 1 [] {} 0 -"CCMA-MONOMER" "cytochrome c maturation protein A" ["YejW", "heme trafficking system protein A"] "MGMLEARELLCERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEVLWQGQPLHQVRDSYHQNLLWIGHQPGIKTRLTALENLHFYHRDGDTAQCLEALAQAGLAGFEDIPVNQLSAGQQRRVALARLWLTRATLWILDEPFTAIDVNGVDRLTQRMAQHTEQGGIVILTTHQPLNVAESKIRRISLTQTRAA" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"CCMA-MONOMER" "cytochrome c maturation protein A" ["YejW", "heme trafficking system protein A"] "MGMLEARELLCERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEVLWQGQPLHQVRDSYHQNLLWIGHQPGIKTRLTALENLHFYHRDGDTAQCLEALAQAGLAGFEDIPVNQLSAGQQRRVALARLWLTRATLWILDEPFTAIDVNGVDRLTQRMAQHTEQGGIVILTTHQPLNVAESKIRRISLTQTRAA" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "CCMB-MONOMER" "cytochrome c maturation protein B" ["YejV", "heme trafficking system protein B"] "MMFWRIFRLELRVAFRHSAEIANPLWFFLIVITLFPLSIGPEPQLLARIAPGIIWVAALLSSLLALERLFRDDLQDGSLEQLMLLPLPLPAVVLAKVMAHWMVTGLPLLILSPLVAMLLGMDVYGWQVMALTLLLGTPTLGFLGAPGVALTVGLKRGGVLLSILVLPLTIPLLIFATAAMDAASMHLPVDGYLAILGALLAGTATLSPFATAAALRISIQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "CCMC-MONOMER" "cytochrome c maturation protein C" ["YejU", "YejT"] "MWKTLHQLAIPPRLYQICGWFIPWLAIASVVVLTVGWIWGFGFAPADYQQGNSYRIIYLHVPAAIWSMGIYASMAVAAFIGLVWQMKMANLAVAAMAPIGAVFTFIALVTGSAWGKPMWGTWWVWDARLTSELVLLFLYVGVIALWHAFDDRRLAGRAAGILVLIGVVNLPIIHYSVEWWNTLHQGSTRMQQSIDPAMRSPLRWSIFGFLLLSATLTLMRMRNLILLMEKRRPWVSELILKRGRK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"CCME-MONOMER" "periplasmic heme chaperone" ["YejS", "cyctochrome c maturation protein E"] "MNIRRKNRLWIACAVLAGLALTIGLVLYALRSNIDLFYTPGEILYGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDLFREGQGVVVQGELEKGNHILAKEVLAKHDENYTPPEVEKAMEANHRRPASVYKDPAS" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"PROTOHEME": 1} 1 +"CCME-MONOMER" "periplasmic heme chaperone" ["YejS", "cyctochrome c maturation protein E"] "MNIRRKNRLWIACAVLAGLALTIGLVLYALRSNIDLFYTPGEILYGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDLFREGQGVVVQGELEKGNHILAKEVLAKHDENYTPPEVEKAMEANHRRPASVYKDPAS" [] ["CCO-PM-BAC-NEG"] 0 [] {"PROTOHEME": 1} 1 "CDPDIGLYPYPHOSPHA-MONOMER" null ["Cdh"] "MKKAGLLFLVMIVIAVVAAGIGYWKLTGEESDTLRKIVLEECLPNQQQNQNPSPCAEVKPNAGYVVLKDLNGPLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVPDRAVSLAINSRTGRTQNHFHIHISCIRPDVRKQLDNNLANISSRWLPLPGGLRGHEYLARRVTESELVQRSPFMMLAEEVPEAREHMGRYGLAMVRQSDNSFVLLATQRNLLTLNRASAEEIQDHQCEILR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "CDPDIGLYSYN-MONOMER" "CDP-diglyceride synthetase" ["Cds", "CdsA"] "MLKYRLISAFVLIPVVIAALFLLPPVGFAIVTLVVCMLAAWEWGQLSGFTTRSQRVWLAVLCGLLLALMLFLLPEYHRNIHQPLVEISLWASLGWWIVALLLVLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAWHYDENHYSGAIWLLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLDVAPVTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFACLLLLVFRTL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "CELA-MONOMER" "N,N'-diacetylchitobiose-specific PTS enzyme IIB component" ["CelA", "Enzyme IIBcel", "EIIBcel", "EIIchb", "Enzyme IIBchb"] "MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPNKPVEVIDSLLYGKVDGLGVLKAAVAAIKKAAAN" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -262,11 +262,11 @@ "CMTA-MONOMER" "mannitol-specific PTS enzyme IICB component CmtA" ["EIICBCmt", "Enzyme IICBCmt"] "MENKSARAKVQAFGGFLTAMVIPNIGAFIAWGFITALFIPTGWLPNEHFAKIVGPMITYLLPVMIGSTGGHLVGGKRGAVMGGIGTIGVIVGAEIPMFLGSMIMGPLGGLVIKYVDKALEKRIPAGFEMVINNFSLGIAGMLLCLLGFEVIGPAVLIANTFVKECIEALVHAGYLPLLSVINEPAKVLFLNNAIDQGVYYPLGMQQASVNGKSIFFMVASNPGPGLGLLLAFTLFGKGMSKRSAPGAMIIHFLGGIHELYFPYVLMKPLTIIAMIAGGMSGTWMFNLLDGGLVAGPSPGSIFAYLALTPKGSFLATIAGVTVGTLVSFAITSLILKMEKTVETESEDEFAQSANAVKAMKQEGAFSLSRVKRIAFVCDAGMGSSAMGATTFRKRLEKAGLAIEVKHYAIENVPADADIVVTHASLEGRVKRVTDKPLILINNYIGDPKLDTLFNQLTAEHKH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "CMTB-MONOMER" "mannitol-specific PTS enzyme IIA component CmtB" ["TolM", "Enzyme IIACmt", "EIIACmt", "Enzyme IIICmt"] "MRLSDYFPESSISVIHSAKDWQEAIDFSMVSLLDKNYISENYIQAIKDSTINNGPYYILAPGVAMPHARPECGALKTGMSLTLLEQGVYFPGNDEPIKLLIGLSAADADSHIGAIQALSELLCEEEILEQLLTASSEKQLADIISRG" [] ["CCO-CYTOSOL"] 0 [] {} 1 "COBALADENOSYLTRANS-MONOMER" "cobinamide/cobalamin adenosyltransferase" ["CobA", "BtuR"] "MSDERYQQRQQRVKEKVDARVAQAQDERGIIIVFTGNGKGKTTAAFGTATRAVGHGKKVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWDTQNRESDTAACREVWQHAKRMLADSSLDMVLLDELTYMVAYDYLPLEEVVQALNERPHQQTVIITGRGCHRDILELADTVSELRPVKHAFDAGVKAQIGIDY" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"COBS-MONOMER" null ["CobS"] "MSKLFWAMLSFITRLPVPRRWSQGLDFEHYSRGIITFPLIGLLLGAISGLVFMVLQAWCGAPLAALFSVLVLVLMTGGFHLDGLADTCDGVFSARSRDRMLEIMRDSRLGTHGGLALIFVVLAKILVLSELALRGESILASLAAACAVSRGTAALLMYRHRYAREEGLGNVFIGKIDGRQTCVTLGLAAIFAAVLLPGMHGVAAMVVTMVAIFILGQLLKRTLGGQTGDTLGAAIELGELVFLLALL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"COBS-MONOMER" null ["CobS"] "MSKLFWAMLSFITRLPVPRRWSQGLDFEHYSRGIITFPLIGLLLGAISGLVFMVLQAWCGAPLAALFSVLVLVLMTGGFHLDGLADTCDGVFSARSRDRMLEIMRDSRLGTHGGLALIFVVLAKILVLSELALRGESILASLAAACAVSRGTAALLMYRHRYAREEGLGNVFIGKIDGRQTCVTLGLAAIFAAVLLPGMHGVAAMVVTMVAIFILGQLLKRTLGGQTGDTLGAAIELGELVFLLALL" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "COBU-MONOMER" "cobinamide-P guanylyltransferase / cobinamide kinase" ["CobU"] "MMILVTGGARSGKSRHAEALIGDSSQVLYIATSQILDDEMAARIEHHRQGRPEHWRTVERWQHLDELIHADINPNEVVLLECVTTMVTNLLFDYGGDKDPDEWDYQAMEQAINAEIQSLIAACQRCPAKVVLVTNEVGMGIVPESRLARHFRDIAGRVNQQLAAAANEVWLVVSGIGVKIK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "CODB-MONOMER" null ["CodB", "CodB cytosine NCS1 transporter"] "MSQDNNFSQGPVPQSARKGVLALTFVMLGLTFFSASMWTGGTLGTGLSYHDFFLAVLIGNLLLGIYTSFLGYIGAKTGLTTHLLARFSFGVKGSWLPSLLLGGTQVGWFGVGVAMFAIPVGKATGLDINLLIAVSGLLMTVTVFFGISALTVLSVIAVPAIACLGGYSVWLAVNGMGGLDALKAVVPAQPLDFNVALALVVGSFISAGTLTADFVRFGRNAKLAVLVAMVAFFLGNSLMFIFGAAGAAALGMADISDVMIAQGLLLPAIVVLGLNIWTTNDNALYASGLGFANITGMSSKTLSVINGIIGTVCALWLYNNFVGWLTFLSAAIPPVGGVIIADYLMNRRRYEHFATTRMMSVNWVAILAVALGIAAGHWLPGIVPVNAVLGGALSYLILNPILNRKTTAAMTHVEANSVE" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 "COPROGENOXI-MONOMER" "coproporphyrinogen III oxidase" ["Sec", "PopB", "HemF"] "MKPDAHQVKQFLLNLQDTICQQLTAVDGAEFVEDSWQREAGGGGRSRVLRNGGVFEQAGVNFSHVHGEAMPASATAHRPELAGRSFEAMGVSLVVHPHNPYVPTSHANVRFFIAEKPGADPVWWFGGGFDLTPFYGFEEDAIHWHRTARDLCLPFGEDVYPRYKKWCDEYFYLKHRNEQRGIGGLFFDDLNTPDFDRCFAFMQAVGKGYTDAYLPIVERRKAMAYGERERNFQLYRRGRYVEFNLVWDRGTLFGLQTGGRTESILMSMPPLVRWEYDYQPKDGSPEAALSEFIKVRDWV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MN+2": 1} 1 -"CORA-MONOMER" "Ni2+/Co2+/Mg2+ transporter" ["CorA", "CorA magnesium ion MIT transporter", "nickel/cobalt/magnesium transporter"] "MLSAFQLENNRLTRLEVEESQPLVNAVWIDLVEPDDDERLRVQSELGQSLATRPELEDIEASARFFEDDDGLHIHSFFFFEDAEDHAGNSTVAFTIRDGRLFTLRERELPAFRLYRMRARSQSMVDGNAYELLLDLFETKIEQLADEIENIYSDLEQLSRVIMEGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKARLPGGQLEQAREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSYGMNFEFMPELKWSFGYPGAIIFMILAGLAPYLYFKRKNWL" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"CORA-MONOMER" "Ni(2+)/Co(2+)/Mg(2+) transporter" ["CorA", "CorA magnesium ion MIT transporter", "nickel/cobalt/magnesium transporter", "Ni2+/Co2+/Mg2+ transporter"] "MLSAFQLENNRLTRLEVEESQPLVNAVWIDLVEPDDDERLRVQSELGQSLATRPELEDIEASARFFEDDDGLHIHSFFFFEDAEDHAGNSTVAFTIRDGRLFTLRERELPAFRLYRMRARSQSMVDGNAYELLLDLFETKIEQLADEIENIYSDLEQLSRVIMEGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKARLPGGQLEQAREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSYGMNFEFMPELKWSFGYPGAIIFMILAGLAPYLYFKRKNWL" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 "CPDB-MONOMER" "2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase" ["CpdB"] "MIKFSATLLATLIAASVNAATVDLRIMETTDLHSNMMDFDYYKDTATEKFGLVRTASLINDARNEVKNSVLVDNGDLIQGSPLADYMSAKGLKAGDIHPVYKALNTLDYTVGTLGNHEFNYGLDYLKNALAGAKFPYVNANVIDARTKQPMFTPYLIKDTEVVDKDGKKQTLKIGYIGVVPPQIMGWDKANLSGKVTVNDITETVRKYVPEMREKGADVVVVLAHSGLSADPYKVMAENSVYYLSEIPGVNAIMFGHAHAVFPGKDFADIEGADIAKGTLNGVPAVMPGMWGDHLGVVDLQLSNDSGKWQVTQAKAEARPIYDIANKKSLAAEDSKLVETLKADHDATRQFVSKPIGKSADNMYSYLALVQDDPTVQVVNNAQKAYVEHYIQGDPDLAKLPVLSAAAPFKVGGRKNDPASYVEVEKGQLTFRNAADLYLYPNTLIVVKASGKEVKEWLECSAGQFNQIDPNSTKPQSLINWDGFRTYNFDVIDGVNYQIDVTQPARYDGECQMINANAERIKNLTFNGKPIDPNAMFLVATNNYRAYGGKFAGTGDSHIAFASPDENRSVLAAWIADESKRAGEIHPAADNNWRLAPIAGDKKLDIRFETSPSDKAAAFIKEKGQYPMNKVATDDIGFAIYQVDLSK" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {"MG+2": 1} 0 "CPM-KDOSYNTH-MONOMER" "3-deoxy-manno-octulosonate cytidylyltransferase" ["KdsB"] "MSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEMR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "CPXA-MONOMER" "sensor histidine kinase CpxA" ["RssE", "Ecf", "Ssd", "Eup", "EcfB"] "MIGSLTARIFAIFWLTLALVLMLVLMLPKLDSRQMTELLDSEQRQGLMIEQHVEAELANDPPNDLMWWRRLFRAIDKWAPPGQRLLLVTTEGRVIGAERSEMQIIRNFIGQADNADHPQKKKYGRVELVGPFSVRDGEDNYQLYLIRPASSSQSDFINLLFDRPLLLLIVTMLVSTPLLLWLAWSLAKPARKLKNAADEVAQGNLRQHPELEAGPQEFLAAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLGTALLRRRSGESKELERIETEAQRLDSMINDLLVMSRNQQKNALVSETIKANQLWSEVLDNAAFEAEQMGKSLTVNFPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFAVDKDGITITVDDDGPGVSPEDREQIFRPFYRTDEARDRESGGTGLGLAIVETAIQQHRGWVKAEDSPLGGLRLVIWLPLYKRS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 @@ -279,13 +279,13 @@ "CYANLY-MONOMER" "cyanase" ["Cnt", "CyaN", "CynS"] "MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGKYLPTKPF" [] ["CCO-CYTOSOL"] 0 [] {} 1 "CYCA-MONOMER" "D-serine/alanine/glycine:H+symporter" ["DagA", "YtfD", "CycA", "CycA APC transporter"] "MVDQVKVVADDQAPAEQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWAGYFTGWTYWFCWVVTGMADVVAITAYAQFWFPDLSDWVASLAVIVLLLTLNLATVKMFGEMEFWFAMIKIVAIVSLIVVGLVMVAMHFQSPTGVEASFAHLWNDGGWFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPEKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLSKRAVPAKGLTFSCICLLGGVVMLYVNPSVIGAFTMITTVSAILFMFVWTIILCSYLVYRKQRPHLHEKSIYKMPLGKLMCWVCMAFFVFVVVLLTLEDDTRQALLVTPLWFIALGLGWLFIGKKRAAELRK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "CYCLASE-MONOMER" "imidazole glycerol phosphate synthase subunit HisF" ["HisF"] "MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAKRYAEEGADELVFYDITASSDGRVVDKSWVSRVAEVIDIPFCVAGGIKSLEDAAKILSFGADKISINSPALADPTLITRLADRFGVQCIVVGIDTWYDAETGKYHVNQYTGDESRTRVTQWETLDWVQEVQKRGAGEIVLNMMNQDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIINIGELKAYLATQGVEIRIC" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"CYDA-MONOMER" "cytochrome bd-I subunit 1" ["CydA", "Cyd-1"] "MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQPAR" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"Heme-b": 59} 1 +"CYDA-MONOMER" "cytochrome bd-I subunit 1" ["CydA", "Cyd-1"] "MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQPAR" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {"Heme-b": 59} 1 "CYDB-MONOMER" "cytochrome bd-I subunit 2" ["CydB", "Cyd-2"] "MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "CYDC-MONOMER" "heme ABC transporter subunit CydC" ["CydC", "YcaB", "SurB", "MdrH", "MdrA"] "MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRISDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQQLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALSEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "CYDD-MONOMER" "heme ABC transporter subunit CydD" ["CydD", "HtrD"] "MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEELFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGRIIEQGRYAELSVAGGPFATLLAHRQEEI" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 "CYNX-MONOMER" null ["CynX", "CynX cyanate MFS transporter"] "MLLVLVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVASSHKTTTTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPMQLPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPVRFPQLWVKEA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "CYOA-MONOMER" "cytochrome bo3 subunit 2" ["CyoA", "cytochrome bo3 terminal oxidase subunit II", "cytochrome o ubiquinol oxidase subunit II", "cytochrome bo3 ubiquinol oxidase subunit II"] "MRLRKYNKSLGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLAVLTWKTTHALEPSKPLAHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGMKFKAIATPDRAAFDQWVAKAKQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKFMAHGKSMDMTQPEGEHSAHEGMEGMDMSHAESAH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"CYOB-MONOMER" "cytochrome bo3 subunit 1" ["CyoB", "cytochrome bo3 terminal oxidase subunit I", "cytochrome o ubiquinol oxidase subunit I", "cytochrome bo3 ubiquinol oxidase subunit I"] "MFGKLSLDAVPFHEPIVMVTIAGIILGGLALVGLITYFGKWTYLWKEWLTSVDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILILPVFGVFSEIAATFSRKRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTGVKIFNWLFTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSQQIDPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLEWATSSPPPFYNFAVVPHVHERDAFWEMKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFSTIFGFAMIWHIWWLAIVGFAGMIITWIVKSFDEDVDYYVPVAEIEKLENQHFDEITKAGLKNGN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"Heme-b": 1, "CU+2": 1, "HEME_O": 1} 1 +"CYOB-MONOMER" "cytochrome bo3 subunit 1" ["CyoB", "cytochrome bo3 terminal oxidase subunit I", "cytochrome o ubiquinol oxidase subunit I", "cytochrome bo3 ubiquinol oxidase subunit I"] "MFGKLSLDAVPFHEPIVMVTIAGIILGGLALVGLITYFGKWTYLWKEWLTSVDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILILPVFGVFSEIAATFSRKRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTGVKIFNWLFTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSQQIDPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLEWATSSPPPFYNFAVVPHVHERDAFWEMKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFSTIFGFAMIWHIWWLAIVGFAGMIITWIVKSFDEDVDYYVPVAEIEKLENQHFDEITKAGLKNGN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "CYOC-MONOMER" "cytochrome bo3 subunit 3" ["CyoC", "cytochrome bo3 terminal oxidase subunit III", "cytochrome o ubiquinol oxidase subunit III", "cytochrome bo3 ubiquinol oxidase subunit III"] "MATDTLTHATAHAHEHGHHDAGGTKIFGFWIYLMSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "CYOD-MONOMER" "cytochrome bo3 subunit 4" ["CyoD", "cytochrome o ubiquinol oxidase subunit IV", "cytochrome bo3 terminal oxidase subunit IV", "cytochrome bo3 ubiquinol oxidase subunit IV"] "MSHSTDHSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQVLVHLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNLNYNMMMH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "CYSA-MONOMER" "sulfate/thiosulfate ABC transporter ATP binding subunit" [] "MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTKLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEATEVADRVVVMSQGNIEQADAPDQVWREPATRFVLEFMGEVNRLQGTIRGGQFHVGAHRWPLGYTPAYQGPVDLFLRPWEVDISRRTSLDSPLPVQVLEASPKGHYTQLVVQPLGWYNEPLTVVMHGDDAPQRGERLFVGLQHARLYNGDERIETRDEELALAQSA" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 1 @@ -293,9 +293,9 @@ "CYSN-MONOMER" "sulfate adenylyltransferase subunit 1" ["CysN", "sulfate adenylyltransferase, CysN subunit"] "MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "CYSP-MONOMER" "thiosulfate/sulfate ABC transporter periplasmic binding protein CysP" ["TSBP"] "MAVNLLKKNSLALVASLLLAGHVQATELLNSSYDVSRELFAALNPPFEQQWAKDNGGDKLTIKQSHAGSSKQALAILQGLKADVVTYNQVTDVQILHDKGKLIPADWQSRLPNNSSPFYSTMGFLVRKGNPKNIHDWNDLVRSDVKLIFPNPKTSGNARYTYLAAWGAADKADGGDKGKTEQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFESEVNNIRKQYEAQGFEVVIPKTNILAEFPVAWVDKNVQANGTEKAAKAYLNWLYSPQAQTIITDYYYRVNNPEVMDKLKDKFPQTELFRVEDKFGSWPEVMKTHFTSGGELDKLLAAGRN" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "CYSS-MONOMER" "cysteine—tRNA ligase" ["Syc", "CysS", "CysRS"] "MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 -"CYST-MONOMER" "sulfate/thiosulfate ABC transporter inner membrane subunit CysU" ["CysT"] "MFAVSSRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLAQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGRRVVGH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"CYST-MONOMER" "sulfate/thiosulfate ABC transporter inner membrane subunit CysU" ["CysT"] "MFAVSSRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLAQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGRRVVGH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "CYSTATHIONINE-BETA-LYASE-MONOMER" "cystathionine β-lyase / L-cysteine desulfhydrase / alanine racemase" ["MetC"] "MADKKLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARIV" [] ["CCO-CYTOSOL"] 1 [] {} 1 -"CYSW-MONOMER" "sulfate/thiosulfate ABC transporter inner membrane subunit CysW" [] "MAEVTQLKRYDARPINWGKWFLIGIGMLVSAFILLVPMIYIFVQAFSKGLMPVLQNLADPDMLHAIWLTVMIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQIMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRLENQEKRAQQEEHHEH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"CYSW-MONOMER" "sulfate/thiosulfate ABC transporter inner membrane subunit CysW" [] "MAEVTQLKRYDARPINWGKWFLIGIGMLVSAFILLVPMIYIFVQAFSKGLMPVLQNLADPDMLHAIWLTVMIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQIMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRLENQEKRAQQEEHHEH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "CYTDEAM-MONOMER" "cytosine/isoguanine deaminase" ["CodA"] "MSNNALQTIINARLPGEEGLWQIHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPPFVEPHIHLDTTQTAGQPNWNQSGTLFEGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGILSYPNGEALLEEALRLGADVVGAIPHFEFTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHHEGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVNIHLQGRFDTYPKRRGITRVKEMLESGINVCFGHDDVFDPWYPLGTANMLQVLHMGLHVCQLMGYGQINDGLNLITHHSARTLNLQDYGIAAGNSANLIILPAENGFDALRRQVPVRYSVRGGKVIASTQPAQTTVYLEQPEAIDYKR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"FE+2": 1, "ZN+2": 1} 1 "CYTIDEAM-MONOMER" "cytidine/deoxycytidine deaminase" ["Cdd"] "MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSATGLDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDYLPDAFGPKDLEIKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDATSATLKALGCHSIDRVLLA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 "CYTOCHROME-B561-MONOMER" "superoxide oxidase" ["CybB", "superoxide:ubiquinone oxidoreductase"] "MENKYSRLQISIHWLVFLLVIAAYCAMEFRGFFPRSDRPLINMIHVSCGISILVLMVVRLLLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVMMYNRGNPWFAFGLTMPYASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHYFWKDNTLLRMMPRKRS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"PROTOHEME": 1} 0 @@ -303,7 +303,7 @@ "CYTOCHROMEC552-MONOMER" "cytochrome c552 nitrite reductase" ["NrfA", "cytochrome c552", "aeg-93", "cytochrome c-552"] "MTRIKINARRIFSLLIPFFFFTSVHAEQTAAPAKPVTVEAKNETFAPQHPDQYLSWKATSEQSERVDALAEDPRLVILWAGYPFSRDYNKPRGHAFAVTDVRETLRTGAPKNAEDGPLPMACWSCKSPDVARLIQKDGEDGYFHGKWARGGPEIVNNLGCADCHNTASPEFAKGKPELTLSRPYAARAMEAIGKPFEKAGRFDQQSMVCGQCHVEYYFDGKNKAVKFPWDDGMKVENMEQYYDKIAFSDWTNSLSKTPMLKAQHPEYETWTAGIHGKNNVTCIDCHMPKVQNAEGKLYTDHKIGNPFDNFAQTCANCHTQDKAALQKVVAERKQSINDLKIKVEDQLVHAHFEAKAALDAGATEAEMKPIQDDIRHAQWRWDLAIASHGIHMHAPEEGLRMLGTAMDKAADARTKLARLLATKGITHEIQIPDISTKEKAQQAIGLNMEQIKAEKQDFIKTVIPQWEEQARKNGLLSQ" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {"CA+2": 1, "PROTOHEME": 1} 1 "DALADALALIGA-MONOMER" "D-alanine—D-alanine ligase A" ["DdlA"] "MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKTTM" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 2} 0 "DALADALALIGB-MONOMER" "D-alanine—D-alanine ligase B" ["Ddl", "DdlB"] "MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELAD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MG+2": 2} 1 -"DALADEHYDROGA-MONOMER" "D-amino acid dehydrogenase" ["DadR", "DadA"] "MRVVILGSGVVGVASAWYLNQAGHEVTVIDREPGAALETSAANAGQISPGYAAPWAAPGVPLKAIKWMFQRHAPLAVRLDGTQFQLKWMWQMLRNCDTSHYMENKGRMVRLAEYSRDCLKALRAETNIQYEGRQGGTLQLFRTEQQYENATRDIAVLEDAGVPYQLLESSRLAEVEPALAEVAHKLTGGLQLPNDETGDCQLFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAMLKGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRVGGMAEIVGFNTELLQPRRETLEMVVRDLYPRGGHVEQATFWTGLRPMTPDGTPVVGRTRFKNLWLNTGHGTLGWTMACGSGQLLSDLLSGRTPAIPYEDLSVARYSRGFTPSRPGHLHGAHS" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"DALADEHYDROGA-MONOMER" "D-amino acid dehydrogenase" ["DadR", "DadA"] "MRVVILGSGVVGVASAWYLNQAGHEVTVIDREPGAALETSAANAGQISPGYAAPWAAPGVPLKAIKWMFQRHAPLAVRLDGTQFQLKWMWQMLRNCDTSHYMENKGRMVRLAEYSRDCLKALRAETNIQYEGRQGGTLQLFRTEQQYENATRDIAVLEDAGVPYQLLESSRLAEVEPALAEVAHKLTGGLQLPNDETGDCQLFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAMLKGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRVGGMAEIVGFNTELLQPRRETLEMVVRDLYPRGGHVEQATFWTGLRPMTPDGTPVVGRTRFKNLWLNTGHGTLGWTMACGSGQLLSDLLSGRTPAIPYEDLSVARYSRGFTPSRPGHLHGAHS" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 1 "DAPASYN-MONOMER" "adenosylmethionine-8-amino-7-oxononanoate aminotransferase" ["BioA"] "MTTDDLAFDQRHIWHPYTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ" [] ["CCO-CYTOSOL"] 0 [] {} 1 "DCTA-MONOMER" "C4 dicarboxylate/orotate:H+ symporter" ["DctA", "SBP2", "DctA DAACS transporter"] "MKTSLFKSLYFQVLTAIAIGILLGHFYPEIGEQMKPLGDGFVKLIKMIIAPVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLIIVNVVQPGAGMNVDPATLDAKAVAVYADQAKDQGIVAFIMDVIPASVIGAFASGNILQVLLFAVLFGFALHRLGSKGQLIFNVIESFSQVIFGIINMIMRLAPIGAFGAMAFTIGKYGVGTLVQLGQLIICFYITCILFVVLVLGSIAKATGFSIFKFIRYIREELLIVLGTSSSESALPRMLDKMEKLGCRKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQATNSQMDIVHQITLLIVLLLSSKGAAGVTGSGFIVLAATLSAVGHLPVAGLALILGIDRFMSEARALTNLVGNGVATIVVAKWVKELDHKKLDDVLNNRAPDGKTHELSS" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "DCTP-DEAM-MONOMER" "dCTP deaminase" ["Dus", "PaxA", "Dcd"] "MRLCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTFRGHTAAFIDLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSFEPLSGPAVRPYNRREDAKYRNQQGAVASRIDKD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -311,7 +311,7 @@ "DCUB-MONOMER" "anaerobic C4-dicarboxylate transporter DcuB" ["GenF", "DcuB"] "MLFTIQLIIILICLFYGARKGGIALGLLGGIGLVILVFVFHLQPGKPPVDVMLVIIAVVAASATLQASGGLDVMLQIAEKLLRRNPKYVSIVAPFVTCTLTILCGTGHVVYTILPIIYDVAIKNNIRPERPMAASSIGAQMGIIASPVSVAVVSLVAMLGNVTFDGRHLEFLDLLAITIPSTLIGILAIGIFSWFRGKDLDKDEEFQKFISVPENREYVYGDTATLLDKKLPKSNWLAMWIFLGAIAVVALLGADSDLRPSFGGKPLSMVLVIQMFMLLTGALIIILTKTNPASISKNEVFRSGMIAIVAVYGIAWMAETMFGAHMSEIQGVLGEMVKEYPWAYAIVLLLVSKFVNSQAAALAAIVPVALAIGVDPAYIVASAPACYGYYILPTYPSDLAAIQFDRSGTTHIGRFVINHSFILPGLIGVSVSCVFGWIFAAMYGFL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "DCUC-MONOMER" "anaerobic C4-dicarboxylate transporter DcuC" ["DcuC"] "MLTFIELLIGVVVIVGVARYIIKGYSATGVLFVGGLLLLIISAIMGHKVLPSSQASTGYSATDIVEYVKILLMSRGGDLGMMIMMLCGFAAYMTHIGANDMVVKLASKPLQYINSPYLLMIAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGISRGAAAAICASPAAIILAPTSGDVVLAAQASEMSLIDFAFKTTLPISIAAIIGMAIAHFFWQRYLDKKEHISHEMLDVSEITTTAPAFYAILPFTPIIGVLIFDGKWGPQLHIITILVICMLIASILEFLRSFNTQKVFSGLEVAYRGMADAFANVVMLLVAAGVFAQGLSTIGFIQSLISIATSFGSASIILMLVLVILTMLAAVTTGSGNAPFYAFVEMIPKLAHSSGINPAYLTIPMLQASNLGRTLSPVSGVVVAVAGMAKISPFEVVKRTSVPVLVGLVIVIVATELMVPGTAAAVTGK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "DCUR-MONOMER" "DNA-binding transcriptional activator DcuR" ["YjdG", "DcuR response regulator", "DcuR"] "MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"DCUS-MONOMER" "sensor histidine kinase DcuS" ["YjdH", "DcuS"] "MRHSLPYRMLRKRPMKLSTTVILMVSAVLFSVLLVVHLIYFSQISDMTRDGLANKALAVARTLADSPEIRQGLQKKPQESGIQAIAEAVRKRNDLLFIVVTDMQSLRYSHPEAQRIGQPFKGDDILKALNGEENVAINRGFLAQALRVFTPIYDENHKQIGVVAIGLELSRVTQQINDSRWSIIWSVLFGMLVGLIGTCILVKVLKKILFGLEPYEISTLFEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVDVSEVLRDGTPRRDEEITIKDRLLLINTVPVRSNGVIIGAISTFRDKTEVRKLMQRLDGLVNYADALRERSHEFMNKLHVILGLLHLKSYKQLEDYILKTANNYQEEIGSLLGKIKSPVIAGFLISKINRATDLGHTLILNSESQLPDSGSEDQVATLITTLGNLIENALEALGPEPGGEISVTLHYRHGWLHCEVNDDGPGIAPDKIDHIFDKGVSTKGSERGVGLALVKQQVENLGGSIAVESEPGIFTQFFVQIPWDGERSNR" ["CCO-PERI-BAC", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"DCUS-MONOMER" "sensor histidine kinase DcuS" ["YjdH", "DcuS"] "MRHSLPYRMLRKRPMKLSTTVILMVSAVLFSVLLVVHLIYFSQISDMTRDGLANKALAVARTLADSPEIRQGLQKKPQESGIQAIAEAVRKRNDLLFIVVTDMQSLRYSHPEAQRIGQPFKGDDILKALNGEENVAINRGFLAQALRVFTPIYDENHKQIGVVAIGLELSRVTQQINDSRWSIIWSVLFGMLVGLIGTCILVKVLKKILFGLEPYEISTLFEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVDVSEVLRDGTPRRDEEITIKDRLLLINTVPVRSNGVIIGAISTFRDKTEVRKLMQRLDGLVNYADALRERSHEFMNKLHVILGLLHLKSYKQLEDYILKTANNYQEEIGSLLGKIKSPVIAGFLISKINRATDLGHTLILNSESQLPDSGSEDQVATLITTLGNLIENALEALGPEPGGEISVTLHYRHGWLHCEVNDDGPGIAPDKIDHIFDKGVSTKGSERGVGLALVKQQVENLGGSIAVESEPGIFTQFFVQIPWDGERSNR" ["CCO-PERI-BAC", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "DCYSDESULF-MONOMER" "D-cysteine desulfhydrase" ["YedO", "DcyD"] "MPLHNLTRFPRLEFIGAPTPLEYLPRFSDYLGREIFIKRDDVTPMAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPNAQLEELATRVEAQGFRPYVIPVGGSNALGALGYVESALEIAQQCEGAVNISSVVVASGSAGTHAGLAVGLEHLMPESELIGVTVSRSVADQLPKVVNLQQAIAKELELTASAEILLWDDYFAPGYGVPNDEGMEAVKLLARLEGILLDPVYTGKAMAGLIDGISQKRFKDEGPILFIHTGGAPALFAYHPHV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "DEHYDDEOXGALACTKIN-MONOMER" null ["YidV", "DgoK"] "MTARYIAIDWGSTNLRAWLYQGDHCLESRQSEAGVTRLNGKSPAAVLAEVTTDWREEKTPVVMAGMVGSNVGWKVAPYLSVPACFSSIGEQLTSVGDNIWIIPGLCVSHDDNHNVMRGEETQLIGARALAPSSLYVMPGTHCKWVQADSQQINDFRTVMTGELHHLLLNHSLIGAGLPPQENSADAFTAGLERGLNTPAILPQLFEVRASHVLGTLPREQVSEFLSGLLIGAEVASMRDYVAHQHAITLVAGTSLTARYQQAFQAMGCDVTAVAGDTAFQAGIRSIAHAVAN" [] ["CCO-CYTOSOL"] 0 [] {} 0 "DEHYDDEOXPHOSGALACT-ALDOL-MONOMER" null ["YidU", "DgoA"] "MQWQTKLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIVTPNIHSEVIRRAVGYGMTVCPGCATATEAFTALEAGAQALKIFPSSAFGPQYIKALKAVLPSDIAVFAVGGVTPENLAQWIDAGCAGAGLGSDLYRAGQSVERTAQQAAAFVKAYREAVQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -323,7 +323,7 @@ "DGTPTRIPHYDRO-MONOMER" "dGTP triphosphohydrolase" ["Dgt", "OptA"] "MAQIDFRKKINWHRRYRSPQGVKTEHEILRIFESDRGRIINSPAIRRLQQKTQVFPLERNAAVRTRLTHSMEVQQVGRYIAKEILSRLKELKLLEAYGLDELTGPFESIVEMSCLMHDIGNPPFGHFGEAAINDWFRQRLHPEDAESQPLTDDRCSVAALRLRDGEEPLNELRRKIRQDLCHFEGNAQGIRLVHTLMRMNLTWAQVGGILKYTRPAWWRGETPETHHYLMKKPGYYLSEEAYIARLRKELNLALYSRFPLTWIMEAADDISYCVADLEDAVEKRIFTVEQLYHHLHEAWGQHEKGSLFSLVVENAWEKSRSNSLSRSTEDQFFMYLRVNTLNKLVPYAAQRFIDNLPAIFAGTFNHALLEDASECSDLLKLYKNVAVKHVFSHPDVERLELQGYRVISGLLEIYRPLLSLSLSDFTELVEKERVKRFPIESRLFHKLSTRHRLAYVEAVSKLPSDSPEFPLWEYYYRCRLLQDYISGMTDLYAWDEYRRLMAVEQ" [] ["CCO-CYTOSOL"] 1 [] {} 1 "DHHB-METHYLTRANSFER-MONOMER" "bifunctional 3-demethylubiquinone-8 3-O-methyltransferase and 2-octaprenyl-6-hydroxyphenol methylase" ["PufX", "YfaB", "UbiG"] "MNAEKSPVNHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNTFKLGPGVDVNYMLHTQNK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "DHPDIOXYGEN-MONOMER" "3-carboxyethylcatechol 2,3-dioxygenase" ["MhpB", "2,3-dihydroxyphenylpropionate/2,3-dihydroxycinnamate 1,2-dioxygenase"] "MHAYLHCLSHSPLVGYVDPAQEVLDEVNGVIASARERIAAFSPELVVLFAPDHYNGFFYDVMPPFCLGVGATAIGDFGSAAGELPVPVELAEACAHAVMKSGIDLAVSYCMQVDHGFAQPLEFLLGGLDKVPVLPVFINGVATPLPGFQRTRMLGEAIGRFTSTLNKRVLFLGSGGLSHQPPVPELAKADAHMRDRLLGSGKDLPASERELRQQRVISAAEKFVEDQRTLHPLNPIWDNQFMTLLEQGRIQELDAVSNEELSAIAGKSTHEIKTWVAAFAAISAFGNWRSEGRYYRPIPEWIAGFGSLSARTEN" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 -"DIACYLGLYKIN-MONOMER" "diacylglycerol kinase" ["DgkA"] "MANNTTGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDVDAITRVLLISSVMLVMIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAVLIAIIVAVITWCILLWSHFG" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 1 [] {"MG+2": 1} 1 +"DIACYLGLYKIN-MONOMER" "diacylglycerol kinase" ["DgkA"] "MANNTTGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDVDAITRVLLISSVMLVMIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAVLIAIIVAVITWCILLWSHFG" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG"] 1 [] {"MG+2": 1} 1 "DIAMINOPIMDECARB-MONOMER" "diaminopimelate decarboxylase" ["LysA"] "MPHSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALKQFDVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVFTADVIDQATLERVSELQIPVNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHLQLVGIHMHIGSGVDYAHLEQVCGAMVRQVIEFGQDLQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGQARLIRRRQTIEELLALELL" [] ["CCO-CYTOSOL"] 0 [] {} 1 "DIAMINOPIMEPIM-MONOMER" "diaminopimelate epimerase" ["DapF"] "MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGEPNFEPSAVPFRANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVDDVDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "DIENOYLCOAREDUCT-MONOMER" null ["YgjL", "FadH"] "MSYPSLFAPLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQSGRADEINTCIGCNQACLDQIFVGKVTSCLVNPRACHETKMPILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTADQLQAFDETILASGIVPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQEPNRALAQPLIDSGKTVHLIGGCDVAMELDARRAIAQGTRLALEI" [] ["CCO-CYTOSOL"] 1 [] {"CPD-7": 1} 0 @@ -335,20 +335,20 @@ "DIHYDROPTERIREDUCT-MONOMER" "NAD(P)H-dependent nitroreductase NfsB" ["Ntr", "NfsB", "DprA", "NfnB"] "MDIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQPWHFIVASTEEGKARVAKSAAGNYVFNERKMLDASHVVVFCAKTAMDDVWLKLVVDQEDADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTEV" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "DIHYDROXYACIDDEHYDRAT-MONOMER" "dihydroxy-acid dehydratase" ["IlvD"] "MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFTQFVPGHVHLRDLGKLVAEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCISNCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQIIKLDLVDAMIQGADPKVSDSQSDQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGNGSLLATHADRKQLFLNAGKRIVELTKRYYEQNDESALPRNIASKAAFENAMTLDIAMGGSTNTVLHLLAAAQEAEIDFTMSDIDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVIGILGELDRAGLLNRDVKNVLGLTLPQTLEQYDVMLTQDDAVKNMFRAGPAGIRTTQAFSQDCRWDTLDDDRANGCIRSLEHAYSKDGGLAVLYGNFAENGCIVKTAGVDDSILKFTGPAKVYESQDDAVEAILGGKVVAGDVVVIRYEGPKGGPGMQEMLYPTSFLKSMGLGKACALITDGRFSGGTSGLSIGHVSPEAASGGSIGLIEDGDLIAIDIPNRGIQLQVSDAELAARREAQDARGDKAWTPKNRERQVSFALRAYASLATSADKGAVRDKSKLGG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"CPD-6": 1, "MG+2": 1} 1 "DINF-MONOMER" "DNA damage-inducible protein F" ["DinF"] "MPPGVAVCFSSLFIRLVCMAFLTSSDKALWHLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAYGAKNPQALARTLVQPLLLALGAGALIALLRTPIIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILLVVGNILNIVLDVWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKILKLRGISGEMLKTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSVVYLLAGEHIIALLTSLTQIQQLADRYLIWQVILPVVGVWCYLLDGMFIGATRATEMRNSMAVAAAGFALTLLTLPWLGNHALWLALTVFLALRGLSLAAIWRRHWRNGTWFAAT" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"DIOHBUTANONEPSYN-MONOMER" "3,4-dihydroxy-2-butanone-4-phosphate synthase" ["LuxH", "HtrP", "RibB"] "MNQTLLSSFGTPFERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHERKAS" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {"MG+2": 2} 1 +"DIOHBUTANONEPSYN-MONOMER" "3,4-dihydroxy-2-butanone-4-phosphate synthase" ["LuxH", "HtrP", "RibB"] "MNQTLLSSFGTPFERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHERKAS" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"MG+2": 2} 1 "DISULFOXRED-MONOMER" "thiol:disulfide oxidoreductase DsbA" ["DsbAreduced", "thiol:disulfide oxidoreductase - DsbAreduced", "Dsf", "PpfA", "IarA", "DsbA", "protein disulfide oxidoreductase DsbA"] "MKKIWLALAGLVLAFSASAAQYEDGKQYTTLEKPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQAWAVAMALGVEDKVTVPLFEGVQKTQTIRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEKK" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 -"DLACTDEHYDROGFAD-MONOMER" "quinone-dependent D-lactate dehydrogenase" ["Ldh", "Dld"] "MSSMTTTDNKAFLNELARLVGSSHLLTDPAKTARYRKGFRSGQGDALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLTEGSTPNGNDYDRDVVIISTLRLDKLHVLGKGEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGSLVQRGPAYTEMSLFARINEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRHDGRHAHDYDYVHRVRDIEADTPARYNADPDRLFESSGCAGKLAVFAVRLDTFEAEKNQQVFYIGTNQPEVLTEIRRHILANFENLPVAGEYMHRDIYDIAEKYGKDTFLMIDKLGTDKMPFFFNLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHLLLKMAGDGVGEAKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVEDILALDIALRRNDTEWYEHLPPEIDSQLVHKLYYGHFMCYVFHQDYIVKKGVDVHALKEQMLELLQQRGAQYPAEHNVGHLYKAPETLQKFYRENDPTNSMNPGIGKTSKRKNWQEVE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 1 [] {} 0 +"DLACTDEHYDROGFAD-MONOMER" "quinone-dependent D-lactate dehydrogenase" ["Ldh", "Dld"] "MSSMTTTDNKAFLNELARLVGSSHLLTDPAKTARYRKGFRSGQGDALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLTEGSTPNGNDYDRDVVIISTLRLDKLHVLGKGEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGSLVQRGPAYTEMSLFARINEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRHDGRHAHDYDYVHRVRDIEADTPARYNADPDRLFESSGCAGKLAVFAVRLDTFEAEKNQQVFYIGTNQPEVLTEIRRHILANFENLPVAGEYMHRDIYDIAEKYGKDTFLMIDKLGTDKMPFFFNLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHLLLKMAGDGVGEAKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVEDILALDIALRRNDTEWYEHLPPEIDSQLVHKLYYGHFMCYVFHQDYIVKKGVDVHALKEQMLELLQQRGAQYPAEHNVGHLYKAPETLQKFYRENDPTNSMNPGIGKTSKRKNWQEVE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 1 [] {} 0 "DLACTDEHYDROGNAD-MONOMER" "D-lactate dehydrogenase" ["HtpH", "HslI", "HslF", "LdhA", "D-lactate dehydrogenase - fermentative"] "MKLAVYSTKQYDKKYLQQVNESFGFELEFFDFLLTEKTAKTANGCEAVCIFVNDDGSRPVLEELKKHGVKYIALRCAGFNNVDLDAAKELGLKVVRVPAYDPEAVAEHAIGMMMTLNRRIHRAYQRTRDANFSLEGLTGFTMYGKTAGVIGTGKIGVAMLRILKGFGMRLLAFDPYPSAAALELGVEYVDLPTLFSESDVISLHCPLTPENYHLLNEAAFEQMKNGVMIVNTSRGALIDSQAAIEALKNQKIGSLGMDVYENERDLFFEDKSNDVIQDDVFRRLSACHNVLFTGHQAFLTAEALTSISQTTLQNLSNLEKGETCPNELV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "DMBPPRIBOSYLTRANS-MONOMER" "nicotinate-nucleotide—dimethylbenzimidazole phosphoribosyltransferase" ["CobT"] "MQILADLLNTIPAIDSTAMSRAQRHIDGLLKPVGSLGKLEVLAIQLAGMPGLNGIPHVGKKAVLVMCADHGVWEEGVAISPKEVTAIQAENMTRGTTGVCVLAEQAGANVHVIDVGIDTAEPIPGLINMRVARGSGNIASAPAMSRRQAEKLLLDVICYTQELAKNGVTLFGVGELGMANTTPAAAIVSTITGRDPEEVVGIGANLPTDKLANKIDVVRRAITLNQPNPQDGVDVLAKVGGFDLVGIAGVMLGAASCGLPVLLDGFLSYAAALAACQMSPAIKPYLIPSHLSAEKGARIALSHLGLEPYLNMEMRLGEGSGAALAMPIIEAACAIYNNMGELAASNIVLPGNTTSDLNS" [] ["CCO-CYTOSOL"] 0 [] {} 1 "DMK-MONOMER" null ["YiiW", "MenA"] "MTEQQISRTQAWLESLRPKTLPLAFAAIIVGTALAWWQGHFDPLVALLALITAGLLQILSNLANDYGDAVKGSDKPDRIGPLRGMQKGVITQQEMKRALIITVVLICLSGLALVAVACHTLADFVGFLILGGLSIIAAITYTVGNRPYGYIGLGDISVLVFFGWLSVMGSWYLQAHTLIPALILPATACGLLATAVLNINNLRDINSDRENGKNTLVVRLGEVNARRYHACLLMGSLVCLALFNLFSLHSLWGWLFLLAAPLLVKQARYVMREMDPVAMRPMLERTVKGALLTNLLFVLGIFLSQWAA" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 -"DMSA-MONOMER" "dimethyl sulfoxide reductase subunit A" ["DmsA", "dimethyl sulfoxide reductase, chain A"] "MKTKIPDAVLAAEVSRRGLVKTTAIGGLAMASSALTLPFSRIAHAVDSAIPTKSDEKVIWSACTVNCGSRCPLRMHVVDGEIKYVETDNTGDDNYDGLHQVRACLRGRSMRRRVYNPDRLKYPMKRVGARGEGKFERISWEEAYDIIATNMQRLIKEYGNESIYLNYGTGTLGGTMTRSWPPGNTLVARLMNCCGGYLNHYGDYSSAQIAEGLNYTYGGWADGNSPSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTDAALVNGLAYVMITENLVDQAFLDKYCVGYDEKTLPASAPKNGHYKAYILGEGPDGVAKTPEWASQITGVPADKIIKLAREIGSTKPAFISQGWGPQRHANGEIATRAISMLAILTGNVGINGGNSGAREGSYSLPFVRMPTLENPIQTSISMFMWTDAIERGPEMTALRDGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEILQDDKKCELIVVIDCHMTSSAKYADILLPDCTASEQMDFALDASCGNMSYVIFNDQVIKPRFECKTIYEMTSELAKRLGVEQQFTEGRTQEEWMRHLYAQSREAIPELPTFEEFRKQGIFKKRDPQGHHVAYKAFREDPQANPLTTPSGKIEIYSQALADIAATWELPEGDVIDPLPIYTPGFESYQDPLNKQYPLQLTGFHYKSRVHSTYGNVDVLKAACRQEMWINPLDAQKRGIHNGDKVRIFNDRGEVHIEAKVTPRMMPGVVALGEGAWYDPDAKRVDKGGCINVLTTQRPSPLAKGNPSHTNLVQVEKV" ["CCO-PM-BAC-NEG"] ["CCO-PERI-BAC", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {"CPD-7": 1, "Molybdenum": 1, "CPD-15873": 1} 1 +"DMSA-MONOMER" "dimethyl sulfoxide reductase subunit A" ["DmsA", "dimethyl sulfoxide reductase, chain A"] "MKTKIPDAVLAAEVSRRGLVKTTAIGGLAMASSALTLPFSRIAHAVDSAIPTKSDEKVIWSACTVNCGSRCPLRMHVVDGEIKYVETDNTGDDNYDGLHQVRACLRGRSMRRRVYNPDRLKYPMKRVGARGEGKFERISWEEAYDIIATNMQRLIKEYGNESIYLNYGTGTLGGTMTRSWPPGNTLVARLMNCCGGYLNHYGDYSSAQIAEGLNYTYGGWADGNSPSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTDAALVNGLAYVMITENLVDQAFLDKYCVGYDEKTLPASAPKNGHYKAYILGEGPDGVAKTPEWASQITGVPADKIIKLAREIGSTKPAFISQGWGPQRHANGEIATRAISMLAILTGNVGINGGNSGAREGSYSLPFVRMPTLENPIQTSISMFMWTDAIERGPEMTALRDGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEILQDDKKCELIVVIDCHMTSSAKYADILLPDCTASEQMDFALDASCGNMSYVIFNDQVIKPRFECKTIYEMTSELAKRLGVEQQFTEGRTQEEWMRHLYAQSREAIPELPTFEEFRKQGIFKKRDPQGHHVAYKAFREDPQANPLTTPSGKIEIYSQALADIAATWELPEGDVIDPLPIYTPGFESYQDPLNKQYPLQLTGFHYKSRVHSTYGNVDVLKAACRQEMWINPLDAQKRGIHNGDKVRIFNDRGEVHIEAKVTPRMMPGVVALGEGAWYDPDAKRVDKGGCINVLTTQRPSPLAKGNPSHTNLVQVEKV" ["CCO-PM-BAC-NEG"] ["CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {"CPD-7": 1, "Molybdenum": 1, "CPD-15873": 1} 1 "DMSB-MONOMER" "dimethyl sulfoxide reductase subunit B" ["DmsB", "dimethyl sulfoxide reductase, chain B"] "MTTQYGFFIDSSRCTGCKTCELACKDYKDLTPEVSFRRIYEYAGGDWQEDNGVWHQNVFAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNETKGHMTKCDGCYDRVAEGKKPICVESCPLRALDFGPIDELRKKHGDLAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPKEV" ["CCO-PM-BAC-NEG"] [] 1 [] {"CPD-7": 4} 1 "DMSC-MONOMER" "dimethyl sulfoxide reductase subunit C" ["DmsC", "dimethyl sulfoxide reductase, chain C"] "MGSGWHEWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEAQQRVIACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVGASALSNEIASGSIFFAVGGIGWLLAMLKKLSPALRTLWLIVTMVLGVIFVWMMVRVYNSIDTVPTWYSIWTPMGFFLTMFMGGPLLGYLLLSLAGVDGWAMRLLPAISVLALVVSGVVSVMQGAELATIHSSVQQAAALVPDYGALMSWRIVLLAVALCLWIAPQLKGYQPAVPLLSVSFILLLAGELIGRGVFYGLHMTVGMAVAS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "DPPA-MONOMER" "dipeptide ABC transporter periplasmic binding protein" ["Dpp", "Fpp", "DppA", "Alu"] "MRISLKKSGMLKLGLSLVAMTVAASVQAKTLVYCSEGSPEGFNPQLFTSGTTYDASSVPLYNRLVEFKIGTTEVIPGLAEKWEVSEDGKTYTFHLRKGVKWHDNKEFKPTRELNADDVVFSFDRQKNAQNPYHKVSGGSYEYFEGMGLPELISEVKKVDDNTVQFVLTRPEAPFLADLAMDFASILSKEYADAMMKAGTPEKLDLNPIGTGPFQLQQYQKDSRIRYKAFDGYWGTKPQIDTLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKQDKSINLMEMPGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKDAIIKAVYQGAGVSAKNLIPPTMWGYNDDVQDYTYDPEKAKALLKEAGLEKGFSIDLWAMPVQRPYNPNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWTGDNGDPDNFFATLFSCAASEQGSNYSKWCYKPFEDLIQPARATDDHNKRVELYKQAQVVMHDQAPALIIAHSTVFEPVRKEVKGYVVDPLGKHHFENVSIE" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "DPPB-MONOMER" "dipeptide ABC transporter membrane subunit DppB" ["DppB"] "MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLELGVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRHKK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "DPPC-MONOMER" "dipeptide ABC transporter membrane subunit DppC" ["DppC"] "MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIVLFIAIFANWIAPYNPAEQFRDALLAPPAWQEGGSMAHLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"DPPD-MONOMER" "dipeptide ABC transporter ATP binding subunit DppD" ["DppD"] "MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHAIFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLDDAGRPTL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"CPD-7": 1} 1 -"DPPF-MONOMER" "dipeptide ABC transporter ATP binding subunit DppF" ["DppE"] "MSTQEATLQQPLLQAIDLKKHYPVKKGMFAPERLVKALDGVSFNLERGKTLAVVGESGCGKSTLGRLLTMIEMPTGGELYYQGQDLLKHDPQAQKLRRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSKEQRREKALSMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFNNPRHPYTQALLSATPRLNPDDRRERIKLSGELPSPLNPPPGCAFNARCRRRFGPCTQLQPQLKDYGGQLVACFAVDQDENPQR" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"DPPD-MONOMER" "dipeptide ABC transporter ATP binding subunit DppD" ["DppD"] "MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHAIFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLDDAGRPTL" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {"CPD-7": 1} 1 +"DPPF-MONOMER" "dipeptide ABC transporter ATP binding subunit DppF" ["DppE"] "MSTQEATLQQPLLQAIDLKKHYPVKKGMFAPERLVKALDGVSFNLERGKTLAVVGESGCGKSTLGRLLTMIEMPTGGELYYQGQDLLKHDPQAQKLRRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSKEQRREKALSMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFNNPRHPYTQALLSATPRLNPDDRRERIKLSGELPSPLNPPPGCAFNARCRRRFGPCTQLQPQLKDYGGQLVACFAVDQDENPQR" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "DSBBPROT-MONOMER" "protein thiol:quinone oxidoreductase DsbB" ["DsbBreduced", "protein thiol:quinone oxidoreductase DsbBreduced", "DsbX", "RoxB", "YcgA", "RosB", "IarB", "DsbB", "quinone reductase DsbB"] "MLRFLNQCSQGRGAWLLMAFTALALELTALWFQHVMLLKPCVLCIYERCALFGVLGAALIGAIAPKTPLRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSPFATCDFMVRFPEWLPLDKWVPQVFVASGDCAERQWDFLGLEMPQWLLGIFIAYLIVAVLVVISQPFKAKKRDLFGR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "DSBC-MONOMER" "protein disulfide isomerase DsbC" ["XprA", "DsbC", "disulfide oxidoreductase 2", "thiol:disulfide oxidoreductase DsbC", "protein disulfide oxidoreductase DsbC"] "MKKGFMLFTLLAAFSGFAQADDAAIQQTLAKMGIKSSDIQPAPVAGMKTVLTNSGVLYITDDGKHIIQGPMYDVSGTAPVNVTNKMLLKQLNALEKEMIVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVLSNGTLVPGYQPPKEMKEFLDEHQKMTSGK" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "DSBD-MONOMER" "thiol-disulfide exchange protein DsbD" ["HtrI", "DipZ", "CycZ", "DsbD", "thiol:disulfide exchange protein DsbDreduced", "inner membrane copper tolerance protein"] "MAQRIFTLILLLCSTSVFAGLFDAPGRSQFVPADQAFAFDFQQNQHDLNLTWQIKDGYYLYRKQIRITPEHAKIADVQLPQGVWHEDEFYGKSEIYRDRLTLPVTINQASAGATLTVTYQGCADAGFCYPPETKTVPLSEVVANNAAPQPVSVPQQEQPTAQLPFSALWALLIGIGIAFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMALTYTALGLVVAAAGLQFQAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLTLMSNRQQGGSPGGVFVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYALGMGLPLMLITVFGNRLLPKSGPWMEQVKTAFGFVILALPVFLLERVIGDVWGLRLWSALGVAFFGWAFITSLQAKRGWMRIVQIILLAAALVSVRPLQDWAFGATHTAQTQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQP" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -369,31 +369,31 @@ "E1P-MONOMER" "pyruvate dehydrogenase E1 component" ["AceE", "subunit of E1p component of pyruvate dehydrogenase complex"] "MSERFPNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLAEARKGGVNVAAGTGISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKATVILAHTIKGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMNDAPAVASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRHHFEVDASYVVVAALGELAKRGEIDKKVVADAIAKFNIDADKVNPRLA" ["CCO-CYTOSOL", "CCO-MEMBRANE"] [] 1 [] {"MG+2": 1} 1 "E2O-MONOMER" "2-oxoglutarate dehydrogenase E2 subunit" ["E2(o) subunit", "SucB", "dihydrolipoyltranssuccinylase"] "MSSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQQASLEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKAPAKESAPAAAAPAAQPALAARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "E2P-MONOMER" "pyruvate dehydrogenase E2 subunit" ["AceF", "dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex"] "MAIEIKVPDIGADEVEITEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGIVKEIKVSVGDKTQTGALIMIFDSADGAADAAPAQAEEKKEAAPAAAPAAAAAKDVNVPDIGSDEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVSTGSLIMVFEVAGEAGAAAPAAKQEAAPAAAPAPAAGVKEVNVPDIGGDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGAAPAAAPAKQEAAAPAPAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLIRRLAREFGVNLAKVKGTGRKGRILREDVQAYVKEAIKRAEAAPAATGGGIPGMLPWPKVDFSKFGEIEEVELGRIQKISGANLSRNWVMIPHVTHFDKTDITELEAFRKQQNEEAAKRKLDVKITPVVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYINIGVAVDTPNGLVVPVFKDVNKKGIIELSRELMTISKKARDGKLTAGEMQGGCFTISSIGGLGTTHFAPIVNAPEVAILGVSKSAMEPVWNGKEFVPRLMLPISLSFDHRVIDGADGARFITIINNTLSDIRRLVM" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 -"E3-MONOMER" "lipoamide dehydrogenase" ["Lpd", "Dhl", "LpdA", "E3 subunit"] "MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRISKKFNLMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDKQLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVFEGSITDLPNPKAKKK" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 1 [] {} 1 -"EG10003-MONOMER" null ["CysZ"] "MVSSFTSAPRSGFYYFAQGWKLVSQPGIRRFVILPLLVNILLMGGAFWWLFTQLDVWIPTLMSYVPDWLQWLSYLLWPLAVISVLLVFGYFFSTIANWIAAPFNGLLAEQLEARLTGATPPDTGIFGIMKDVPRIMKREWQKFAWYLPRAIVLLILYFIPGIGQTVAPVLWFLFSAWMLAIQYCDYPFDNHKVPFKEMRTALRTRKITNMQFGALTSLFTMIPLLNLFIMPVAVCGATAMWVDCYRDKHAMWR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"E3-MONOMER" "lipoamide dehydrogenase" ["Lpd", "Dhl", "LpdA", "E3 subunit"] "MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRISKKFNLMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDKQLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVFEGSITDLPNPKAKKK" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 1 [] {} 1 +"EG10003-MONOMER" null ["CysZ"] "MVSSFTSAPRSGFYYFAQGWKLVSQPGIRRFVILPLLVNILLMGGAFWWLFTQLDVWIPTLMSYVPDWLQWLSYLLWPLAVISVLLVFGYFFSTIANWIAAPFNGLLAEQLEARLTGATPPDTGIFGIMKDVPRIMKREWQKFAWYLPRAIVLLILYFIPGIGQTVAPVLWFLFSAWMLAIQYCDYPFDNHKVPFKEMRTALRTRKITNMQFGALTSLFTMIPLLNLFIMPVAVCGATAMWVDCYRDKHAMWR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG10004-MONOMER" "fused 4'-phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase" ["Dfp", "CoaBC"] "MSLAGKKIVLGVSGGIAAYKTPELVRRLRDRGADVRVAMTEAAKAFITPLSLQAVSGYPVSDSLLDPAAEAAMGHIELGKWADLVILAPATADLIARVAAGMANDLVSTICLATPAPVAVLPAMNQQMYRAAATQHNLEVLASRGLLIWGPDSGSQACGDIGPGRMLDPLTIVDMAVAHFSPVNDLKHLNIMITAGPTREPLDPVRYISNHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAVADYRAATVAPEKIKKQATQGDELTIKMVKNPDIVAGVAALKDHRPYVVGFAAETNNVEEYARQKRIRKNLDLICANDVSQPTQGFNSDNNALHLFWQDGDKVLPLERKELLGQLLLDEIVTRYDEKNRR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "EG10010-MONOMER" "RhsE protein in rhs element" ["RhsE"] "MSTRLTTLSHTSEGHRVSVHYGYDDKGRLTGERQTVENPETGELLWHHETGHAYNEQGLANRVTPDSLPPVEWLTYGSGYLAGMKLGGTPLLEFTRDRLHRETVRSFGSMAGSNAAYKLTSTYTPAGQLQSQHLNSLVYDRDYGWNDNGDLVRISGPRQTREYGYSATGRLESVRTLAPDLDIRIPYATDPAGNRLPDPELHPDSTLTVWPDNRIAEDAHYVYRHDEYGRLTEKTDRIPAGVIRTDDERTHHYHYDSQHRLVFYTRIQHGEPLVESRYLYDPLGRRMAKRVWRRERDLTGWMSLSRKPEVTWYGWDGDRLTTVQTDTTRIQTVYEPGSFTPLIRVETENGEREKAQRRSLAETLQQEGSENGHGVVFPAELVRLLDRLEEEIRADRVSSESRAWLAQCGLTVEQLARQVEPEYTPARKVHFYHCDHRGLPLALISEDGNTAWRGEYDEWGNQLNEENPHHLHQPYRLPGQQHDEESGLYYNRHRHYDPLQGRYITPDPIGLRGGWNMYQYPLNPIQVIDPMGLDAIENMTSGGLIYAVSGVPGLIAANSITNSAYQFGYDMDAIVGGAHNGAADAMRHCYLMCRMTKTFGSTIADVIGKNHEAAGDRQGQPAKERIMDLKNNTVGIACGDFSAKCSDACIEKYNTGQLFGLDGIKADNPIKAKQGSSDASNY" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10011-MONOMER" "DNA binding and peroxide stress response protein YaaA" ["YaaA"] "MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPPQISTLMRISDKLAGINAARFHDWQPDFTPANARQAILAFKGDVYTGLQAETFSEDDFDFAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENARGKDLYQFWGDIITNKLNEALAAQGDNVVINLASDEYFKSVKPKKLNAEIIKPVFLDEKNGKFKIISFYAKKARGLMSRFIIENRLTKPEQLTGFNSEGYFFDEDSSSNGELVFKRYEQR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG10013-MONOMER" "peptidoglycan endopeptidase MepM" ["YebA"] "MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRDATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAIPQDELDDKIAGEAGVHEYVVSTGDTLSSILNQYGIDMGDITQLAAADKELRNLKIGQQLSWTLTADGELQRLTWEVSRRETRTYDRTAANGFKMTSEMQQGEWVNNLLKGTVGGSFVASARNAGLTSAEVSAVIKAMQWQMDFRKLKKGDEFAVLMSREMLDGKREQSQLLGVRLRSEGKDYYAIRAEDGKFYDRNGTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAMPQGTPVLSVGDGEVVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWINQQAVNPLTAKLPRTEGLTGSDRREFLAQAKEIVPQLRFD" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"ZN+2": 1} 0 +"EG10013-MONOMER" "peptidoglycan endopeptidase MepM" ["YebA"] "MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRDATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAIPQDELDDKIAGEAGVHEYVVSTGDTLSSILNQYGIDMGDITQLAAADKELRNLKIGQQLSWTLTADGELQRLTWEVSRRETRTYDRTAANGFKMTSEMQQGEWVNNLLKGTVGGSFVASARNAGLTSAEVSAVIKAMQWQMDFRKLKKGDEFAVLMSREMLDGKREQSQLLGVRLRSEGKDYYAIRAEDGKFYDRNGTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAMPQGTPVLSVGDGEVVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWINQQAVNPLTAKLPRTEGLTGSDRREFLAQAKEIVPQLRFD" [] ["CCO-PM-BAC-NEG"] 0 [] {"ZN+2": 1} 0 "EG10015-MONOMER" "cytoskeleton protein RodZ" ["YfgA", "RodZ"] "MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELLPGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDRKAQQEEITTMADQSSAELSSNSEQGQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANVDTAATPAPTAATTPDGAAPLPTDQAGVTTPVADPNALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQSPAQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG10018-MONOMER" "regulator of CsrB and CsrC decay" ["YhdA", "CsrD"] "MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQAVATAIDTHLVSNDFSVLRPQITELMMSADIVRVDLLHGDKQVYTLARNGSYRPVGSSDLFRELSVPLIKHPGMSLRLVYQDPMGNYFHSLMTTAPLTGAIGFIIVMLFLAVRWLQRQLAGQELLETRATRILNGERGSNVLGTIYEWPPRTSSALDTLLREIQNAREQHSRLDTLIRSYAAQDVKTGLNNRLFFDNQLATLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHSQVEEQFFTLTNLLSTFMMRYPGALLARYHRSDFAALLPHRTLKEAESIAGQLIKAVDTLPNNKMLDRDDMIHIGICAWRSGQDTEQVMEHAESATRNAGLQGGNSWAIYDDSLPEKGRGNVRWRTLIEQMLSRGGPRLYQKPAVTREGQVHHRELMCRIFDGNEEVSSAEYMPMVLQFGLSEEYDRLQISRLIPLLRYWPEENLAIQVTVESLIRPRFQRWLRDTLMQCEKSQRKRIIIELAEADVGQHISRLQPVIRLVNALGVRVAVNQAGLTLVSTSWIKELNVELLKLHPGLVRNIEKRTENQLLVQSLVEACSGTSTQVYATGVRSRSEWQTLIQRGVTGGQGDFFASSQPLDTNVKKYSQRYSV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"EG10018-MONOMER" "regulator of CsrB and CsrC decay" ["YhdA", "CsrD"] "MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQAVATAIDTHLVSNDFSVLRPQITELMMSADIVRVDLLHGDKQVYTLARNGSYRPVGSSDLFRELSVPLIKHPGMSLRLVYQDPMGNYFHSLMTTAPLTGAIGFIIVMLFLAVRWLQRQLAGQELLETRATRILNGERGSNVLGTIYEWPPRTSSALDTLLREIQNAREQHSRLDTLIRSYAAQDVKTGLNNRLFFDNQLATLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHSQVEEQFFTLTNLLSTFMMRYPGALLARYHRSDFAALLPHRTLKEAESIAGQLIKAVDTLPNNKMLDRDDMIHIGICAWRSGQDTEQVMEHAESATRNAGLQGGNSWAIYDDSLPEKGRGNVRWRTLIEQMLSRGGPRLYQKPAVTREGQVHHRELMCRIFDGNEEVSSAEYMPMVLQFGLSEEYDRLQISRLIPLLRYWPEENLAIQVTVESLIRPRFQRWLRDTLMQCEKSQRKRIIIELAEADVGQHISRLQPVIRLVNALGVRVAVNQAGLTLVSTSWIKELNVELLKLHPGLVRNIEKRTENQLLVQSLVEACSGTSTQVYATGVRSRSEWQTLIQRGVTGGQGDFFASSQPLDTNVKKYSQRYSV" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "EG10021-MONOMER" "P-loop guanosine triphosphatase YjiA" ["YjiA"] "MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGEAEKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADKQNDISSIVVELDYPVDISEVSRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGDEKPHSTMVFIGIQLPEEEIRAAFAGLRK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 4} 0 "EG10037-MONOMER" "DNA oxidative demethylase" ["AidD", "AlkB", "α-ketoglutarate-dependent dioxygenase", "alkyladenine-DNA dioxygenase"] "MLDLFADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE" [] ["CCO-CYTOSOL"] 0 [] {"FE+2": 1} 0 "EG10040-MONOMER" "β-lactamase" ["AmpA", "AmpC"] "MFKTTLCALLITASCSTFAAPQQINDIVHRTITPLIEQQKIPGMAVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLATYTAGGLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWGYREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLKPLDINEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGFGSYVAFIPEKELGIVMLANKNYPNPARVDAAWQILNALQ" [] ["CCO-PERI-BAC"] 0 [] {} 0 "EG10041-MONOMER" "1,6-anhydro-N-acetylmuramoyl-L-alanine amidase" ["AmpD"] "MLLEQGWLVGARRVPSPHYDCRPDDETPTLLVVHNISLPPGEFGGPWIDALFTGTIDPQAHPFFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSQYQGRERCNDFSIGIELEGTDTLAYTDAQYQQLAAVTRALIDCYPDIAKNMTGHCDIAPDRKTDPGPAFDWARFRVLVSKETT" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 -"EG10042-MONOMER" "protein AmpE" ["AmpE"] "MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGALV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG10043-MONOMER" null ["Amt", "AmtA", "CysQ"] "MLDQVCQLARNAGDAIMQVYDGTKPMDVVSKADNSPVTAADIAAHTVIMDGLRTLTPDVPVLSEEDPPGWEVRQHWQRYWLVDPLDGTKEFIKRNGEFTVNIALIDHGKPILGVVYAPVMNVMYSAAEGKAWKEECGVRKQIQVRDARPPLVVISRSHADAELKEYLQQLGEHQTTSIGSSLKFCLVAEGQAQLYPRFGPTNIWDTAAGHAVAAAAGAHVHDWQGKPLDYTPRESFLNPGFRVSIY" [] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {"MG+2": 2} 0 -"EG10044-MONOMER" "osmotically-inducible lipoprotein OsmE" ["Anr", "OsmE"] "MNKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKKGMSRAQVAQIAGKPSSEVSMIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYDTDPQAAK" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"EG10042-MONOMER" "protein AmpE" ["AmpE"] "MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGALV" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG10043-MONOMER" null ["Amt", "AmtA", "CysQ"] "MLDQVCQLARNAGDAIMQVYDGTKPMDVVSKADNSPVTAADIAAHTVIMDGLRTLTPDVPVLSEEDPPGWEVRQHWQRYWLVDPLDGTKEFIKRNGEFTVNIALIDHGKPILGVVYAPVMNVMYSAAEGKAWKEECGVRKQIQVRDARPPLVVISRSHADAELKEYLQQLGEHQTTSIGSSLKFCLVAEGQAQLYPRFGPTNIWDTAAGHAVAAAAGAHVHDWQGKPLDYTPRESFLNPGFRVSIY" [] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {"MG+2": 2} 0 +"EG10044-MONOMER" "osmotically-inducible lipoprotein OsmE" ["Anr", "OsmE"] "MNKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKKGMSRAQVAQIAGKPSSEVSMIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYDTDPQAAK" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG10047-MONOMER" "DUF525 domain-containing protein ApaG" ["ApaG"] "MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH" [] ["CCO-PERI-BAC"] 0 [] {} 0 "EG10048-MONOMER" "diadenosine tetraphosphatase" ["CfcB", "ApaH", "bis(5'-nucleosyl)-tetraphosphatase"] "MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDLGEAAAS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10083-MONOMER" "protein AroM" ["AroM"] "MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREEVMAEYAPEAGEDTILTLLNDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANISSMTARNTIFLEPSRILPPLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSLGNPIHDSEQKIIDAGKELLAKGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIARLAAELLV" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG10085-MONOMER" "6-phospho-β-glucosidase AscB" ["Sac", "AscB"] "MSVFPESFLWGGALAANQSEGAFREGDKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEATDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDEITPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKLVEFFSRYARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQVKYQAAHHQLVASALATKIAHEVNPQNQVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGTYPAYSARVFREKGVTINKAPGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRITMNMMYDRYQKPLFLVENGLGAKDEFAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVFVDRDDAGNGTLTRTRKKSFWWYKKVIASNGEDLE" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"EG10085-MONOMER" "cryptic 6-phospho-β-glucosidase AscB" ["Sac", "AscB"] "MSVFPESFLWGGALAANQSEGAFREGDKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEATDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDEITPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKLVEFFSRYARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQVKYQAAHHQLVASALATKIAHEVNPQNQVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGTYPAYSARVFREKGVTINKAPGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRITMNMMYDRYQKPLFLVENGLGAKDEFAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVFVDRDDAGNGTLTRTRKKSFWWYKKVIASNGEDLE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10087-MONOMER" "DNA-binding transcriptional repressor AscG" ["Sac", "AscG"] "MTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESGYRPNLLARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFDDIAIAPYTVPALSSVKIPVTEMIQEIIGRLIFMLDGGDFSPPKTFSGKLIRRDSLIAPSR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10090-MONOMER" "putative anaerobic sulfatase maturation enzyme AslB" ["GppB", "AtsB", "AslB"] "MLQQVPTRAFHVMAKPSGSDCNLNCDYCFYLEKQSLYREKPVTHMDDDTLEAYVRHYIAASEPQNEVAFTWQGGEPTLLGLAFYRRAVALQAKYGAGRKISNSFQTNGVLLDDEWCAFLAEHHFLVGLSLDGPPEIHNQYRVTKGGRPTHKLVMRALTLLQKHHVDYNVLVCVNRTSAQQPLQVYDFLCDAGVEFIQFIPVVERLADETTARDGLKLHAPGDIQGELTEWSVRPEEFGEFLVAIFDHWIKRDVGKIFVMNIEWAFANFVGAPGAVCHHQPTCGRSVIVEHNGDVYACDHYVYPQYRLGNMHQQTIAEMIDSPQQQAFGEDKFKQLPAQCRSCNVLKACWGGCPKHRFMLDASGKPGLNYLCAGYQRYFRHLPPYLKAMADLLAHGRPASDIMHAHLLVVSK" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 3} 0 -"EG10106-MONOMER" "ATP synthase accessory factor AtpI" ["AtpI", "UncI"] "MSVSLVSRNVARKLLLVQLLVVIASGLLFSLKDPFWGVSAISGGLAVFLPNVLFMIFAWRHQAHTPAKGRVAWTFAFGEAFKVLAMLVLLVVALAVLKAVFLPLIVTWVLVLVVQILAPAVINNKG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 1 [] {} 0 +"EG10106-MONOMER" "ATP synthase accessory factor AtpI" ["AtpI", "UncI"] "MSVSLVSRNVARKLLLVQLLVVIASGLLFSLKDPFWGVSAISGGLAVFLPNVLFMIFAWRHQAHTPAKGRVAWTFAFGEAFKVLAMLVLLVVALAVLKAVFLPLIVTWVLVLVVQILAPAVINNKG" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 1 [] {} 0 "EG10108-MONOMER" null ["Bcp"] "MNPLKAGDIAPKFSLPDQDGEQVNLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVDVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVCEQFGVWGEKSFMGKTYDGIHRISFLIDADGKIEHVFDDFKTSNHHDVVLNWLKEHA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10113-MONOMER" "bacterioferritin" ["Bfr", "cytochrome b1"] "MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"FE+2": 3, "Heme-b": 1} 1 -"EG10114-MONOMER" "6-phospho-β-glucosidase B" ["BlgA", "BglB", "phospho-β-glucosidase B, cryptic", "6-phospho-b-glucosidase", "6-phospho-b-D-glucosyl-(1,4)-D-glucose glucohydrolase", "phospho-b-glucosidase", "phosphocellobiase", "6-phospho-β-glucosidase B, cryptic"] "MKAFPETFLWGGATAANQVEGAWQEDGKGISTSDLQPHGVMGKMEPRILGKENIKDVAIDFYHRYPEDIALFAEMGFTCLRISIAWARIFPQGDEVEPNEAGLAFYDRLFDEMAQAGIKPLVTLSHYEMPYGLVKNYGGWANRAVIDHFEHYARTVFTRYQHKVALWLTFNEINMSLHAPFTGVGLAEESGEAEVYQAIHHQLVASARAVKACHSLLPEAKIGNMLLGGLVYPLTCQPQDMLQAMEENRRWMFFGDVQARGQYPGYMQRFFRDHNITIEMTESDAEDLKHTVDFISFSYYMTGCVSHDESINKNAQGNILNMIPNPHLKSSEWGWQIDPVGLRVLLNTLWDRYQKPLFIVENGLGAKDSVEADGSIQDDYRIAYLNDHLVQVNEAIADGVDIMGYTSWGPIDLVSASHSQMSKRYGFIYVDRDDNGEGSLTRTRKKSFGWYAEVIKTRGLSLKKITIKAP" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"EG10114-MONOMER" "cryptic 6-phospho-β-glucosidase B" ["BlgA", "BglB", "6-phospho-beta-glucosidase", "6-phospho-b-D-glucosyl-(1,4)-D-glucose glucohydrolase", "phosphocellobiase"] "MKAFPETFLWGGATAANQVEGAWQEDGKGISTSDLQPHGVMGKMEPRILGKENIKDVAIDFYHRYPEDIALFAEMGFTCLRISIAWARIFPQGDEVEPNEAGLAFYDRLFDEMAQAGIKPLVTLSHYEMPYGLVKNYGGWANRAVIDHFEHYARTVFTRYQHKVALWLTFNEINMSLHAPFTGVGLAEESGEAEVYQAIHHQLVASARAVKACHSLLPEAKIGNMLLGGLVYPLTCQPQDMLQAMEENRRWMFFGDVQARGQYPGYMQRFFRDHNITIEMTESDAEDLKHTVDFISFSYYMTGCVSHDESINKNAQGNILNMIPNPHLKSSEWGWQIDPVGLRVLLNTLWDRYQKPLFIVENGLGAKDSVEADGSIQDDYRIAYLNDHLVQVNEAIADGVDIMGYTSWGPIDLVSASHSQMSKRYGFIYVDRDDNGEGSLTRTRKKSFGWYAEVIKTRGLSLKKITIKAP" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10116-MONOMER" "transcriptional antiterminator BglG" ["BglC", "BglG"] "MNMQITKILNNNVVVVIDDQQREKVVMGRGIGFQKRAGERINSSGIEKEYALSSHELNGRLSELLSHIPLEVMATCDRIISLAQERLGKLQDSIYISLTDHCQFAIKRFQQNVLLPNPLLWDIQRLYPKEFQLGEEALTIIDKRLGVQLPKDEVGFIAMHLVSAQMSGNMEDVAGVTQLMREMLQLIKFQFSLNYQEESLSYQRLVTHLKFLSWRILEHASINDSDESLQQAVKQNYPQAWQCAERIAIFIGLQYQRKISPAEIMFLAINIERVRKEH" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10119-MONOMER" "malonyl-acyl carrier protein methyltransferase" ["BioC", "malonyl-[acp] methyltransferase"] "MATVNKQAIAAAFGRAAAHYEQHADLQRQSADALLAMLPQRKYTHVLDAGCGPGWMSRHWRERHAQVTALDLSPPMLVQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPKGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDEIEQSLNGVHYQHHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQLAWPQQQGRYPLTYHLFLGVIARE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10122-MONOMER" "pimeloyl-acyl carrier protein methyl ester esterase" ["BioB", "BioH", "pimeloyl-[acp] methyl ester esterase"] "MNNIWWQTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLVDLPGFGRSRGFGALSLADMAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPHSESYIFAKAAHAPFISHPAEFCHLLVALKQRV" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -401,29 +401,29 @@ "EG10125-MONOMER" "DNA-binding transcriptional dual regulator BolA" ["BolA"] "MMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTYTIKEWEGLQDTVFASPPCRGAGSIA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10126-MONOMER" "cobalamin outer membrane transporter" ["Cer", "Bfe", "BtuB", "Vitamin B12 outer membrane transporter"] "MIKKASLLTACSVTAFSAWAQDTSPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSYQNYDVSTQQQLGDKTRVTLLGDYAHTHGYDVVAYGNTGTQAQTDNDGFLSKTLYGALEHNFTDAWSGFVRGYGYDNRTNYDAYYSPGSPLLDTRKLYSQSWDAGLRYNGELIKSQLITSYSHSKDYNYDPHYGRYDSSATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTTTPGTGYVEDGYDQRNTGIYLTGLQQVGDFTFEGAARSDDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQLYGFYGNPNLDPEKSKQWEGAFEGLTAGVNWRISGYRNDVSDLIDYDDHTLKYYNEGKARIKGVEATANFDTGPLTHTVSYDYVDARNAITDTPLLRRAKQQVKYQLDWQLYDFDWGITYQYLGTRYDKDYSSYPYQTVKMGGVSLWDLAVAYPVTSHLTVRGKIANLFDKDYETVYGYQTAGREYTLSGSYTF" ["CCO-MEMBRANE", "CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {"CA+2": 2} 1 "EG10136-MONOMER" "fused CCA tRNA nucleotidyltransferase/phosphohydrolase" ["Cca", "CCA-adding enzyme", "fused CCA tRNA nucleotidyltransferase / 2',3'-cyclic phosphodiesterase / 2' nucleotidase and phosphatase"] "MKIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGRDFPVFLHPQTHEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDDNGEIIDPYNGLGDLQNRLLRHVSPAFGEDPLRVLRVARFAARYAHLGFRIADETLALMREMTHAGELEHLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPAPAKWHPEIDTGIHTLMTLSMAAMLSPQVDVRFATLCHDLGKGLTPPELWPRHHGHGPAGVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQRVEQLALTSEADVRGRTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFKGVEIREELTRRRIAAVASWKEQRCPKPE" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 -"EG10143-MONOMER" "ChbR" ["CelD"] "MMQPVINAPEIATAREQQLFNGKNFHVFIYNKTESISGLHQHDYYEFTLVLTGRYFQEINGKRVLLERGDFVFIPLGSHHQSFYEFGATRILNVGISKRFFEQHYLPLLPYCFVASQVYRTNNAFLTYVETVISSLNFRETGLEEFVEMVTFYVINRLRHYREEQVIDDVPQWLKSTVEKMHDKEQFSESALENMVALSAKSQEYLTRATQRYYGKTPMQIINEIRINFAKKQLEMTNYSVTDIAFEAGYSSPSLFIKTFKKLTSFTPKSYRKKLTEFNQ" [] ["CCO-CYTOSOL"] 0 [] {} 1 +"EG10143-MONOMER" "DNA binding transcriptional dual regulator ChbR" ["CelD"] "MMQPVINAPEIATAREQQLFNGKNFHVFIYNKTESISGLHQHDYYEFTLVLTGRYFQEINGKRVLLERGDFVFIPLGSHHQSFYEFGATRILNVGISKRFFEQHYLPLLPYCFVASQVYRTNNAFLTYVETVISSLNFRETGLEEFVEMVTFYVINRLRHYREEQVIDDVPQWLKSTVEKMHDKEQFSESALENMVALSAKSQEYLTRATQRYYGKTPMQIINEIRINFAKKQLEMTNYSVTDIAFEAGYSSPSLFIKTFKKLTSFTPKSYRKKLTEFNQ" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10144-MONOMER" "monoacetylchitobiose-6-phosphate hydrolase" ["YdjD", "ChbF", "CelF"] "MSQKLKVVTIGGGSSYTPELLEGFIKRYHELPVSELWLVDVEGGKPKLDIIFDLCQRMIDNAGVPMKLYKTLDRREALKDADFVTTQLRVGQLPARELDERIPLSHGYLGQETNGAGGLFKGLRTIPVIFDIVKDVEELCPNAWVINFTNPAGMVTEAVYRHTGFKRFIGVCNIPIGMKMFIRDVLMLKDSDDLSIDLFGLNHMVFIKDVLINGKSRFAELLDGVASGQLKASSVKNIFDLPFSEGLIRSLNLLPCSYLLYYFKQKEMLAIEMGEYYKGGARAQVVQKVEKQLFELYKNPELKVKPKELEQRGGAYYSDAACEVINAIYNDKQAEHYVNIPHHGQIDNIPADWAVEMTCKLGRDGATPHPRITHFDDKVMGLIHTIKGFEIAASNAALSGEFNDVLLALNLSPLVHSDRDAELLAREMILAHEKWLPNFADCIAELKKAH" [] ["CCO-CYTOSOL"] 1 [] {"MN+2": 1} 1 -"EG10145-MONOMER" "putative inner membrane protein CreD" ["Cet", "CreD"] "MLKSPLFWKMTSLFGAVLLLLIPIMLIRQVIVERADYRSDVEDAIRQSTSGPQKLVGPLIAIPVTELYTVQEEDKTVERKRSFIHFWLPESLMVDGNQNVEERKIGIYTGQVWHSDLTLKADFDVSRLSELNAPNITLGKPFIVISVGDARGIGVVKAPEVNGTALTIEPGTGLEQGGQGVHIPLPEGDWRKQNLKLNMALNLSGTGDLSVVPGGRNSEMTLTSNWPHPSFLGDFLPAKREVSESGFQAHWQSSWFANNLGERFASGNDTGWENFPAFSVAVTTPADQYQLTDRATKYAILLIALTFMAFFVFETLTAQRLHPMQYLLVGLSLVMFYLLLLALSEHTGFTVAWIIASLIGAIMNGIYLQAVLKGWCNSMLFTLALLLLDGVMWGLLNSADSALLLGTSVLVVALAGMMFVTRNIDWYAFSLPKMKASKEVTTDDELRIWK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG10145-MONOMER" "putative inner membrane protein CreD" ["Cet", "CreD"] "MLKSPLFWKMTSLFGAVLLLLIPIMLIRQVIVERADYRSDVEDAIRQSTSGPQKLVGPLIAIPVTELYTVQEEDKTVERKRSFIHFWLPESLMVDGNQNVEERKIGIYTGQVWHSDLTLKADFDVSRLSELNAPNITLGKPFIVISVGDARGIGVVKAPEVNGTALTIEPGTGLEQGGQGVHIPLPEGDWRKQNLKLNMALNLSGTGDLSVVPGGRNSEMTLTSNWPHPSFLGDFLPAKREVSESGFQAHWQSSWFANNLGERFASGNDTGWENFPAFSVAVTTPADQYQLTDRATKYAILLIALTFMAFFVFETLTAQRLHPMQYLLVGLSLVMFYLLLLALSEHTGFTVAWIIASLIGAIMNGIYLQAVLKGWCNSMLFTLALLLLDGVMWGLLNSADSALLLGTSVLVVALAGMMFVTRNIDWYAFSLPKMKASKEVTTDDELRIWK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG10153-MONOMER" "molybdopterin molybdotransferase" ["NarE", "ChlE", "BisB", "MoeA"] "MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQMDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFGGL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10154-MONOMER" "molybdopterin-synthase adenylyltransferase" ["ChlN", "MoeB"] "MAELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLFGENALTCVEAGVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKLMRNPGCEVCGQ" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 -"EG10155-MONOMER" "iron-catecholate outer membrane transporter CirA" ["Cir", "FeuA", "CirA", "colicin I receptor"] "MFRLNPFVRVGLCLSAISCAWPVLAVDDDGETMVVTASSVEQNLKDAPASISVITQEDLQRKPVQNLKDVLKEVPGVQLTNEGDNRKGVSIRGLDSSYTLILVDGKRVNSRNAVFRHNDFDLNWIPVDSIERIEVVRGPMSSLYGSDALGGVVNIITKKIGQKWSGTVTVDTTIQEHRDRGDTYNGQFFTSGPLIDGVLGMKAYGSLAKREKDDPQNSTTTDTGETPRIEGFSSRDGNVEFAWTPNQNHDFTAGYGFDRQDRDSDSLDKNRLERQNYSVSHNGRWDYGTSELKYYGEKVENKNPGNSSPITSESNTVDGKYTLPLTAINQFLTVGGEWRHDKLSDAVNLTGGTSSKTSASQYALFVEDEWRIFEPLALTTGVRMDDHETYGEHWSPRAYLVYNATDTVTVKGGWATAFKAPSLLQLSPDWTSNSCRGACKIVGSPDLKPETSESWELGLYYMGEEGWLEGVESSVTVFRNDVKDRISISRTSDVNAAPGYQNFVGFETGANGRRIPVFSYYNVNKARIQGVETELKIPFNDEWKLSINYTYNDGRDVSNGENKPLSDLPFHTANGTLDWKPLALEDWSFYVSGHYTGQKRADSATAKTPGGYTIWNTGAAWQVTKDVKLRAGVLNLGDKDLSRDDYSYNEDGRRYFMAVDYRF" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 +"EG10155-MONOMER" "Fe-catecholate outer membrane transporter CirA" ["Cir", "FeuA", "CirA", "colicin I receptor", "iron-catecholate outer membrane transporter CirA"] "MFRLNPFVRVGLCLSAISCAWPVLAVDDDGETMVVTASSVEQNLKDAPASISVITQEDLQRKPVQNLKDVLKEVPGVQLTNEGDNRKGVSIRGLDSSYTLILVDGKRVNSRNAVFRHNDFDLNWIPVDSIERIEVVRGPMSSLYGSDALGGVVNIITKKIGQKWSGTVTVDTTIQEHRDRGDTYNGQFFTSGPLIDGVLGMKAYGSLAKREKDDPQNSTTTDTGETPRIEGFSSRDGNVEFAWTPNQNHDFTAGYGFDRQDRDSDSLDKNRLERQNYSVSHNGRWDYGTSELKYYGEKVENKNPGNSSPITSESNTVDGKYTLPLTAINQFLTVGGEWRHDKLSDAVNLTGGTSSKTSASQYALFVEDEWRIFEPLALTTGVRMDDHETYGEHWSPRAYLVYNATDTVTVKGGWATAFKAPSLLQLSPDWTSNSCRGACKIVGSPDLKPETSESWELGLYYMGEEGWLEGVESSVTVFRNDVKDRISISRTSDVNAAPGYQNFVGFETGANGRRIPVFSYYNVNKARIQGVETELKIPFNDEWKLSINYTYNDGRDVSNGENKPLSDLPFHTANGTLDWKPLALEDWSFYVSGHYTGQKRADSATAKTPGGYTIWNTGAAWQVTKDVKLRAGVLNLGDKDLSRDDYSYNEDGRRYFMAVDYRF" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 1 "EG10156-MONOMER" "ATP-dependent Clp protease ATP-binding subunit ClpA" ["LopD", "ATP-binding component of serine protease", "ClpA"] "MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"EG10157-MONOMER" "protein disaggregase ClpB" ["HtpM", "ClpB", "F84.1", "F68.5", "E89", "chaperone protein ClpB"] "MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 +"EG10157-MONOMER" "protein disaggregase" ["HtpM", "ClpB", "F84.1", "F68.5", "E89", "chaperone protein ClpB"] "MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10158-MONOMER" "ATP-dependent Clp protease proteolytic subunit" ["LopP", "heat shock protein F21.5", "ClpP"] "MSYSGERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN" ["CCO-CYTOSOL", "CCO-MEMBRANE"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10159-MONOMER" "ATP-dependent Clp protease ATP-binding subunit ClpX" ["LopC", "ClpX"] "MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQASGE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"ZN+2": 1} 1 "EG10167-MONOMER" "pyruvate transporter CstA" ["YbdC", "CstA", "cst-2", "carbon starvation protein A"] "MNKSGKYLVWTVLSVMGAFALGYIALNRGEQINALWIVVASVCIYLIAYRFYGLYIAKNVLAVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLALFMGIYLRYLRPGRIGEVSVIGLVFLIFAIISGGWVAESPTWAPYFDFTGVQLTWMLVGYGFVAAVLPVWLLLAPRDYLSTFLKIGTIVGLAVGILIMRPTLTMPALTKFVDGTGPVWTGNLFPFLFITIACGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMALVSACIIDPGVYFAMNSPMAVLAPAGTADVVASAAQVVSSWGFSITPDTLNQIASEVGEQSIISRAGGAPTLAVGMAYILHGALGGMMDVAFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVVSPGLKRTDSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLCAVVLFKMKRQRYAWVALVPTAWLLICTLTAGWQKAFSPDAKVGFLAIANKFQAMIDSGNIPSQYTESQLAQLVFNNRLDAGLTIFFMVVVVVLALFSIKTALAALKDPKPTAKETPYEPMPENVEEIVAQAKGAH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG10168-MONOMER" "apolipoprotein N-acyltransferase" ["CutE", "Lnt"] "MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIGFCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTTWLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEGQLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSANGIELTAAICYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWPLWVLTALFGFAAVLMSLRQRRK" ["CCO-PERI-BAC", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG10169-MONOMER" "colicin V production protein" ["DedE", "CvpA"] "MVWIDYAIIAVIAFSSLVSLIRGFVREALSLVTWGCAFFVASHYYTYLSVWFTGFEDELVRNGIAIAVLFIATLIVGAIVNFVIGQLVEKTGLSGTDRVLGVCFGALRGVLIVAAILFFLDSFTGVSKSEDWSKSQLIPQFSFIIRCFFDYLQSSSSFLPRA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG10201-MONOMER" "D-alanyl-D-alanine carboxypeptidase DacA" ["Pfv", "DacA", "PBP5", "penicillin-binding protein 5", "murein D,D-carboxypeptidase DacA", "D-alanine carboxypeptidase IA"] "MNTIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELHAPLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNFFGKIIDYIKLMFHHWFG" ["CCO-PERI-BAC", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"EG10201-MONOMER" "D-alanyl-D-alanine carboxypeptidase DacA" ["Pfv", "DacA", "PBP5", "penicillin-binding protein 5", "murein D,D-carboxypeptidase DacA", "D-alanine carboxypeptidase IA"] "MNTIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELHAPLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNFFGKIIDYIKLMFHHWFG" ["CCO-PERI-BAC", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "EG10202-MONOMER" "peptidoglycan DD-endopeptidase DacB" ["DacB", "D-alanyl-D-alanine carboxypeptidase DacB", "PBP4", "penicillin-binding protein 4"] "MRFSRFIIGLTSCIAFSVQAANVDEYITQLPAGANLALMVQKVGASAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDLVARFGADPTLKRQDIRNMVATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCFSAPPAAAIVDRNCFSVSLYSAPKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCELDVVPGDLNRFTLTGCLPQRSEPLPLAFAVQDGASYAGAILKDELKQAGITWSGTLLRQTQVNEPGTVVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSDAVRQILRQQAGVDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYDGSLQYRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLSGYAVEPADQRNRRIPLVRFESRLYKDIYQNN" ["CCO-PERI-BAC", "CCO-PM-BAC-NEG"] ["CCO-PERI-BAC"] 0 [] {} 1 -"EG10203-MONOMER" "D-alanyl-D-alanine carboxypeptidase DacC" ["DacC", "penicillin-binding protein 6", "PBP6", "murein DD-carboxypeptidase", "PBP6a"] "MTQYSSLLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGEAGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTIDFQLNGKSIEQRPLIVMENVEEGGFFGRVWDFVMMKFHQWFGSWFS" ["CCO-PERI-BAC", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"EG10203-MONOMER" "D-alanyl-D-alanine carboxypeptidase DacC" ["DacC", "penicillin-binding protein 6", "PBP6", "murein DD-carboxypeptidase", "PBP6a"] "MTQYSSLLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGEAGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTIDFQLNGKSIEQRPLIVMENVEEGGFFGRVWDFVMMKFHQWFGSWFS" ["CCO-PERI-BAC", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "EG10204-MONOMER" "DNA adenine methyltransferase" ["Dam"] "MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDASVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVVKVRRSISSNGGTRKKVDELLALYKPGVVSPAKK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10210-MONOMER" "ATP-dependent RNA helicase DbpA" ["RhlC", "DbpA", "ATP-dependent RNA helicase, specific for 23S rRNA"] "MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10211-MONOMER" "DNA-cytosine methyltransferase" ["Mec", "Dcm"] "MQENISVTDSYSTGNAAQAMLEKLLQIYDVKTLVAQLNGVGENHWSAAILKRALANDSAWHRLSEKEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRPAMFVLENVKNLKSHDQGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPVLWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLLEPKIKQAVALRQQEAQHGRRSR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10212-MONOMER" "peptidyl-dipeptidase Dcp" ["Dcp", "dipeptidyl carboxypeptidase II"] "MTTMNPFLVQSTLPYLAPHFDQIANHHYRPAFDEGMQQKRAEIAAIALNPQMPDFNNTILALEQSGELLTRVTSVFFAMTAAHTNDELQRLDEQFSAELAELANDIYLNGELFARVDAVWQRRESLGLDSESIRLVEVIHQRFVLAGAKLAQADKAKLKVLNTEAATLTSQFNQRLLAANKSGGLVVNDIAQLAGMSEQEIALAAEAAREKGLDNKWLIPLLNTTQQPALAEMRDRATREKLFIAGWTRAEKNDANDTRAIIQRLVEIRAQQATLLGFPHYAAWKIADQMAKTPEAALNFMREIVPAARQRASDELASIQAVIDKQQGGFSAQPWDWAFYAEQVRREKFDLDEAQLKPYFELNTVLNEGVFWTANQLFGIKFVERFDIPVYHPDVRVWEIFDHNGVGLALFYGDFFARDSKSGGAWMGNFVEQSTLNKTHPVIYNVCNYQKPAAGEPALLLWDDVITLFHEFGHTLHGLFARQRYATLSGTNTPRDFVEFPSQINEHWATHPQVFARYARHYQSGAAMPDELQQKMRNASLFNKGYEMSELLSAALLDMRWHCLEENEAMQDVDDFELRALVAENMDLPAIPPRYRSSYFAHIFGGGYAAGYYAYLWTQMLADDGYQWFVEQGGLTRENGLRFREAILSRGNSEDLERLYRQWRGKAPKIMPMLQHRGLNI" ["CCO-PERI-BAC", "CCO-CYTOSOL"] ["CCO-PERI-BAC", "CCO-CYTOSOL"] 1 [] {"ZN+2": 1} 0 "EG10215-MONOMER" "ATP-dependent RNA helicase DeaD" ["RhlD", "MssB", "DeaD", "CsdA", "DEAD-box RNA helicase"] "MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGGDA" ["CCO-CYTOSOL"] ["CCO-RIBOSOME", "CCO-CYTOSOL"] 1 [] {} 1 -"EG10216-MONOMER" "DedA family protein DedA" ["DedA"] "MDLIYFLIDFILHIDVHLAELVAEYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLETNDLNVHMMVVLMLIAAIVGDAVNYTIGRLFGEKLFSNPNSKIFRRSYLDKTHQFYEKHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYNVIGALLWVLLFTYAGYFFGTIPMVQDNLKLLIVGIIVVSILPGVIEIIRHKRAAARAAK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG10218-MONOMER" "cell division protein DedD" ["DedD"] "MASKFQNRLVGTIVLVALGVIVLPGLLDGQKKHYQDEFAAIPLVPKAGDRDEPDMMPAATQALPTQPPEGAAEEVRAGDAAAPSLDPATIAANNTEFEPEPAPVAPPKPKPVEPPKPKVEAPPAPKPEPKPVVEEKAAPTGKAYVVQLGALKNADKVNEIVGKLRGAGYRVYTSPSTPVQGKITRILVGPDASKDKLKGSLGELKQLSGLSGVVMGYTPN" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG10216-MONOMER" "DedA family protein DedA" ["DedA"] "MDLIYFLIDFILHIDVHLAELVAEYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLETNDLNVHMMVVLMLIAAIVGDAVNYTIGRLFGEKLFSNPNSKIFRRSYLDKTHQFYEKHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYNVIGALLWVLLFTYAGYFFGTIPMVQDNLKLLIVGIIVVSILPGVIEIIRHKRAAARAAK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG10218-MONOMER" "cell division protein DedD" ["DedD"] "MASKFQNRLVGTIVLVALGVIVLPGLLDGQKKHYQDEFAAIPLVPKAGDRDEPDMMPAATQALPTQPPEGAAEEVRAGDAAAPSLDPATIAANNTEFEPEPAPVAPPKPKPVEPPKPKVEAPPAPKPEPKPVVEEKAAPTGKAYVVQLGALKNADKVNEIVGKLRGAGYRVYTSPSTPVQGKITRILVGPDASKDKLKGSLGELKQLSGLSGVVMGYTPN" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG10226-MONOMER" "DNA-binding transcriptional dual regulator DicA" ["FtsT", "DicA"] "METKNLTIGERIRYRRKNLKHTQRSLAKALKISHVSVSQWERGDSEPTGKNLFALSKVLQCSPTWILFGDEDKQPTPPVEKPVALSPKELELLELFNALPESEQDTQLAEMRARVKNFNKLFEELLKARQRTNKR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10227-MONOMER" "Qin prophage; cell division inhibition protein DicB" ["FtsT", "DicB"] "MKTLLPNVNTSEGCFEIGVTISNPVFTEDAINKRKQERELLNKICIVSMLARLRLMPKGCAQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10228-MONOMER" "Qin prophage; putative DNA-binding transcriptional regulator DicC" ["FtsT", "DicC"] "MLKTDALLYFGSKTKLAQAAGIRLASLYSWKGDLVPEGRAMRLQEASGGELQYDPKVYDEYRKTKRAGRLNNENHS" [] [] 0 [] {} 0 @@ -434,29 +434,29 @@ "EG10238-MONOMER" "DNA polymerase III subunit α" ["SdgC", "PolC", "DnaE"] "MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELEFD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10239-MONOMER" "DNA primase" ["SdgA", "ParB", "DnaP", "DnaG"] "MAGRIPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHNEKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSMWDDIADKNIAEQTFTDSLNHMFDSLLELRQEELIARERTHGLSNEERLELWTLNQELAKK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 2} 1 "EG10240-MONOMER" "chaperone protein DnaJ" ["GrpC", "GroP", "DnaJ", "DnaK co-chaperone Hsp40"] "MAKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFGGGRGRQRAARGADLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSVKIPAGVDTGDRIRLAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRVKLKVPGETQTGKLFRMRGKGVKSVRGGAQGDLLCRVVVETPVGLNERQKQLLQELQESFGGPTGEHNSPRSKSFFDGVKKFFDDLTR" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"ZN+2": 2} 1 -"EG10241-MONOMER" "chaperone protein DnaK" ["GrpC", "GrpF", "Seg", "DnaK", "Hsp70", "heat shock protein 70"] "MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHAQQQTAGADASANNAKDDDVVDAEFEEVKDKK" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 1 [] {} 0 +"EG10241-MONOMER" "chaperone protein DnaK" ["GrpC", "GrpF", "Seg", "DnaK", "Hsp70", "heat shock protein 70"] "MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHAQQQTAGADASANNAKDDDVVDAEFEEVKDKK" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 1 [] {} 0 "EG10242-MONOMER" "β sliding clamp" ["DnaN", "DNA polymerase III subunit β"] "MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10243-MONOMER" "DNA polymerase III subunit ε" ["MutD", "DnaQ"] "MSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMAFAMEGETQQQQGEATIQRIVRQASKLRVVFATDEEIAAHEARLDLVQKKGGSCLWRA" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "EG10244-MONOMER" "primosomal protein DnaT" ["DnaT"] "MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDSQIPPGFRG" [] [] 1 [] {} 1 -"EG10245-MONOMER" "DNA polymerase III subunit τ" ["DnaZ", "DnaX", "DNA elongation factor III"] "MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI" [] ["CCO-CYTOSOL"] 0 [] {} 1 +"EG10245-MONOMER" "DNA polymerase III subunit tau" ["DnaZ", "DnaX", "DNA elongation factor III", "DNA polymerase III subunit τ"] "MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10246-MONOMER" "membrane-bound lytic murein transglycosylase D" ["YafG", "MltD", "DniR"] "MKAKAILLASVLLVGCQSTGNVQQHAQSLSAAGQGEAAKFTSQARWMDDGTSIAPDGDLWAFIGDELKMGIPENDRIREQKQKYLRNKSYLHDVTLRAEPYMYWIAGQVKKRNMPMELVLLPIVESAFDPHATSGANAAGIWQIIPSTGRNYGLKQTRNYDARRDVVASTTAALNMMQRLNKMFDGDWLLTVAAYNSGEGRVMKAIKTNKARGKSTDFWSLPLPQETKQYVPKMLALSDILKNSKRYGVRLPTTDESRALARVHLSSPVEMAKVADMAGISVSKLKTFNAGVKGSTLGASGPQYVMVPKKHADQLRESLASGEIAAVQSTLVADNTPLNSRVYTVRSGDTLSSIASRLGVSTKDLQQWNKLRGSKLKPGQSLTIGAGSSAQRLANNSDSITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFVKNNNMPDS" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 "EG10252-MONOMER" "evolved β-D-galactosidase subunit α" ["EbgA"] "MNRWENIQLTHENRLAPRAYFFSYDSVAQARTFARETSSLFLPLSGQWNFHFFDHPLQVPEAFTSELMADWGHITVPAMWQMEGHGKLQYTDEGFPFPIDVPFVPSDNPTGAYQRIFTLSDGWQGKQTLIKFDGVETYFEVYVNGQYVGFSKGSRLTAEFDISAMVKTGDNLLCVRVMQWADSTYVEDQDMWWSAGIFRDVYLVGKHLTHINDFTVRTDFDEAYCDATLSCEVVLENLAASPVVTTLEYTLFDGERVVHSSAIDHLAIEKLTSASFAFTVEQPQQWSAESPYLYHLVMTLKDANGNVLEVVPQRVGFRDIKVRDGLFWINNRYVMLHGVNRHDNDHRKGRAVGMDRVEKDLQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITDDPQWEKVYVERIVRHIHAQKNHPSIIIWSLGNESGYGCNIRAMYHAAKALDDTRLVHYEEDRDAEVVDIISTMYTRVPLMNEFGEYPHPKPRIICEYAHAMGNGPGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDHGNVWYKFGGDYGDYPNNYNFCLDGLIYSDQTPGPGLKEYKQVIAPVKIHARDLTRGELKVENKLWFTTLDDYTLHAEVRAEGETLATQQIKLRDVAPNSEAPLQITLPQLDAREAFLNITVTKDSRTRYSEAGHPIATYQFPLKENTAQPVPFAPNNARPLTLEDDRLSCTVRGYNFAITFSKMSGKPTSWQVNGESLLTREPKINFFKPMIDNHKQEYEGLWQPNHLQIMQEHLRDFAVEQSDGEVLIISRTVIAPPVFDFGMRCTYIWRIAADGQVNVALSGERYGDYPHIIPCIGFTMGINGEYDQVAYYGRGPGENYADSQQANIIDIWRSTVDAMFENYPFPQNNGNRQHVRWTALTNRHGNGLLVVPQRPINFSAWHYTQENIHAAQHCNELQRSDDITLNLDHQLLGLGSNSWGSEVLDSWRVWFRDFSYGFTLLPVSGGEATAQSLASYEFGAGFFSTNLHSENKQ" [] [] 0 [] {} 1 "EG10253-MONOMER" "DUF386 domain-containing evolved β-D-galactosidase subunit β" ["EbgC", "evolved β-D-galactosidase subunit β"] "MRIIDNLEQFRQIYASGKKWQRCVEAIENIDNIQPGVAHSIGDSLTYRVETDSATDALFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFICNNAVKKVVLKVTIEDGYFHNK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10255-MONOMER" "serine protease inhibitor ecotin" ["Eti", "Eco"] "MKTILPAVLFAAFATTSAWAAESVQPLEKIAPYPQAEKGMKRQVIQLTPQEDESTLKVELLIGQTLEVDCNLHRLGGKLENKTLEGWGYDYYVFDKVSSPVSTMMACPDGKKEKKFVTAYLGDAGMLRYNSKLPIVVYTPDNVDVKYRVWKAEEKIDNAVVR" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "EG10266-MONOMER" "multidrug efflux pump membrane fusion lipoprotein AcrE" ["EnvC", "AcrE"] "MTKHARFFLLPSFILISAALIAGCNDKGEEKAHVGEPQVTVHIVKTAPLEVKTELPGRTNAYRIAEVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPISGRIGKSTVTEGALVTNGQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHKENATSNVELVMENGQTYPLKGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGVQPDAILIPQQGVSRTPRGDATVLIVNDKSQVEARPVVASQAIGDKWLISEGLKSGDQVIVSGLQKARPGEQVKATTDTPADTASK" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"EG10270-MONOMER" "30S ribosomal subunit maturation GTPase Era" ["SdgE", "RbaA", "Era"] "MSIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERALRSLGYVDDL" ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 1 [] {} 0 +"EG10270-MONOMER" "30S ribosomal subunit maturation GTPase Era" ["SdgE", "RbaA", "Era"] "MSIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERALRSLGYVDDL" ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 1 [] {} 0 "EG10271-MONOMER" "Ton complex subunit ExbB" ["ExbB"] "MGNNLMQTDLSVWGMYQHADIVVKCVMIGLILASVVTWAIFFSKSVEFFNQKRRLKREQQLLAEARSLNQANDIAADFGSKSLSLHLLNEAQNELELSEGSDDNEGIKERTSFRLERRVAAVGRQMGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIYNVFARQIGGFKAMLGDVAAQVLLLQSRDLDLEASAAAHPVRVAQKLRAG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG10272-MONOMER" "Ton complex subunit ExbD" ["ExbD"] "MAMHLNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRPEKPVYLSVKADNSMFIGNDPVTDETMITALNALTEGKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVGEETAKAK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"EG10280-MONOMER" "long-chain fatty acid outer membrane channel / bacteriophage T2 receptor" ["Ttr", "FadL"] "MSQKTLFTKSALAVAVALISTQAWSAGFQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYGLPIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"EG10280-MONOMER" "long-chain fatty acid outer membrane channel / bacteriophage T2 receptor" ["Ttr", "FadL"] "MSQKTLFTKSALAVAVALISTQAWSAGFQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYGLPIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 0 "EG10284-MONOMER" "formate dehydrogenase formation protein" ["FdhE"] "MSIRIIPQDELGSSEKRTADMIPPLLFPRLKNLYNRRAERLRELAENNPLGDYLRFAALIAHAQEVVLYDHPLEMDLTARIKEASAQGKPPLDIHVLPRDKHWQKLLMALIAELKPEMSGPALAVIENLEKASTQELEDMASALFASDFSSVSSDKAPFIWAALSLYWAQMANLIPGKARAEYGEQRQYCPVCGSMPVSSMVQIGTTQGLRYLHCNLCETEWHVVRVKCSNCEQSGKLHYWSLDDEQAAIKAESCDDCDTYLKILYQEKDPKIEAVADDLASLVLDARMEQEGYARSSINPFLFPGEGE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"EG10286-MONOMER" "ferric citrate outer membrane transporter" ["FecA"] "MTPLRVFRKTTPLVNTIRLSLLPLAGLSFSAFAAQVNIAPGSLDKALNQYAAHSGFTLSVDASLTRGKQSNGLHGDYDVESGLQQLLDGSGLQVKPLGNNSWTLEPAPAPKEDALTVVGDWLGDARENDVFEHAGARDVIRREDFAKTGATTMREVLNRIPGVSAPENNGTGSHDLAMNFGIRGLNPRLASRSTVLMDGIPVPFAPYGQPQLSLAPVSLGNMDAIDVVRGGGAVRYGPQSVGGVVNFVTRAIPQDFGIEAGVEGQLSPTSSQNNPKETHNLMVGGTADNGFGTALLYSGTRGSDWREHSATRIDDLMLKSKYAPDEVHTFNSLLQYYDGEADMPGGLSRADYDADRWQSTRPYDRFWGRRKLASLGYQFQPDSQHKFNIQGFYTQTLRSGYLEQGKRITLSPRNYWVRGIEPRYSQIFMIGPSAHEVGVGYRYLNESTHEMRYYTATSSGQLPSGSSPYDRDTRSGTEAHAWYLDDKIDIGNWTITPGMRFEHIESYQNNAITGTHEEVSYNAPLPALNVLYHLTDSWNLYANTEGSFGTVQYSQIGKAVQSGNVEPEKARTWELGTRYDDGALTAEMGLFLINFNNQYDSNQTNDTVTARGKTRHTGLETQARYDLGTLTPTLDNVSIYASYAYVNAEIREKGDTYGNLVPFSPKHKGTLGVDYKPGNWTFNLNSDFQSSQFADNANTVKESADGSTGRIPGFMLWGARVAYDFGPQMADLNLAFGVKNIFDQDYFIRSYDDNNKGIYAGQPRTLYMQGSLKF" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 -"EG10292-MONOMER" "ferric citrate regulator FecR" ["FecR", "anti-sigma factor FecR"] "MNPLLTDSRRQALRSASHWYAVLSGERVSPQQEARWQQWYEQDQDNQWAWQQVENLRNQLGGVPGDVASRALHDTRLTRRHVMKGLLLLLGAGGGWQLWQSETGEGLRADYRTAKGTVSRQQLEDGSLLTLNTQSAADVRFDAHQRTVRLWYGEIAITTAKDALQRPFRVLTRQGQLTALGTEFTVRQQDNFTQLDVQQHAVEVLLASAPAQKRIVNAGESLQFSASEFGAVKPLDDESTSWTKDILSFSDKPLGEVIATLTRYRNGVLRCDPAVAGLRLSGTFPLKNTDAILNVIAQTLPVKIQSITRYWINISPL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG10293-MONOMER" "ferric enterobactin outer membrane transporter" ["Fep", "Cbt", "Cbr", "FeuB", "FepA"] "MNKKIHSLALLVNLGIYGVAQAQEPTDTPVSHDDTIVVTAAEQNLQAPGVSTITADEIRKNPVARDVSKIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPENTLILIDGKPVSSRNSVRQGWRGERDTRGDTSWVPPEMIERIEVLRGPAAARYGNGAAGGVVNIITKKGSGEWHGSWDAYFNAPEHKEEGATKRTNFSLTGPLGDEFSFRLYGNLDKTQADAWDINQGHQSARAGTYATTLPAGREGVINKDINGVVRWDFAPLQSLELEAGYSRQGNLYAGDTQNTNSDSYTRSKYGDETNRLYRQNYALTWNGGWDNGVTTSNWVQYEHTRNSRIPEGLAGGTEGKFNEKATQDFVDIDLDDVMLHSEVNLPIDFLVNQTLTLGTEWNQQRMKDLSSNTQALTGTNTGGAIDGVSTTDRSPYSKAEIFSLFAENNMELTDSTIVTPGLRFDHHSIVGNNWSPALNISQGLGDDFTLKMGIARAYKAPSLYQTNPNYILYSKGQGCYASAGGCYLQGNDDLKAETSINKEIGLEFKRDGWLAGVTWFRNDYRNKIEAGYVAVGQNAVGTDLYQWDNVPKAVVEGLEGSLNVPVSETVMWTNNITYMLKSENKTTGDRLSIIPEYTLNSTLSWQAREDLSMQTTFTWYGKQQPKKYNYKGQPAVGPETKEISPYSIVGLSATWDVTKNVSLTGGVDNLFDKRLWRAGNAQTTGDLAGANYIAGAGAYTYNEPGRTWYMSVNTHF" ["CCO-CE-BAC", "CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 +"EG10286-MONOMER" "ferric citrate outer membrane transporter" ["FecA"] "MTPLRVFRKTTPLVNTIRLSLLPLAGLSFSAFAAQVNIAPGSLDKALNQYAAHSGFTLSVDASLTRGKQSNGLHGDYDVESGLQQLLDGSGLQVKPLGNNSWTLEPAPAPKEDALTVVGDWLGDARENDVFEHAGARDVIRREDFAKTGATTMREVLNRIPGVSAPENNGTGSHDLAMNFGIRGLNPRLASRSTVLMDGIPVPFAPYGQPQLSLAPVSLGNMDAIDVVRGGGAVRYGPQSVGGVVNFVTRAIPQDFGIEAGVEGQLSPTSSQNNPKETHNLMVGGTADNGFGTALLYSGTRGSDWREHSATRIDDLMLKSKYAPDEVHTFNSLLQYYDGEADMPGGLSRADYDADRWQSTRPYDRFWGRRKLASLGYQFQPDSQHKFNIQGFYTQTLRSGYLEQGKRITLSPRNYWVRGIEPRYSQIFMIGPSAHEVGVGYRYLNESTHEMRYYTATSSGQLPSGSSPYDRDTRSGTEAHAWYLDDKIDIGNWTITPGMRFEHIESYQNNAITGTHEEVSYNAPLPALNVLYHLTDSWNLYANTEGSFGTVQYSQIGKAVQSGNVEPEKARTWELGTRYDDGALTAEMGLFLINFNNQYDSNQTNDTVTARGKTRHTGLETQARYDLGTLTPTLDNVSIYASYAYVNAEIREKGDTYGNLVPFSPKHKGTLGVDYKPGNWTFNLNSDFQSSQFADNANTVKESADGSTGRIPGFMLWGARVAYDFGPQMADLNLAFGVKNIFDQDYFIRSYDDNNKGIYAGQPRTLYMQGSLKF" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 1 +"EG10292-MONOMER" "ferric citrate regulator FecR" ["FecR", "anti-sigma factor FecR"] "MNPLLTDSRRQALRSASHWYAVLSGERVSPQQEARWQQWYEQDQDNQWAWQQVENLRNQLGGVPGDVASRALHDTRLTRRHVMKGLLLLLGAGGGWQLWQSETGEGLRADYRTAKGTVSRQQLEDGSLLTLNTQSAADVRFDAHQRTVRLWYGEIAITTAKDALQRPFRVLTRQGQLTALGTEFTVRQQDNFTQLDVQQHAVEVLLASAPAQKRIVNAGESLQFSASEFGAVKPLDDESTSWTKDILSFSDKPLGEVIATLTRYRNGVLRCDPAVAGLRLSGTFPLKNTDAILNVIAQTLPVKIQSITRYWINISPL" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG10293-MONOMER" "ferric enterobactin outer membrane transporter" ["Fep", "Cbt", "Cbr", "FeuB", "FepA"] "MNKKIHSLALLVNLGIYGVAQAQEPTDTPVSHDDTIVVTAAEQNLQAPGVSTITADEIRKNPVARDVSKIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPENTLILIDGKPVSSRNSVRQGWRGERDTRGDTSWVPPEMIERIEVLRGPAAARYGNGAAGGVVNIITKKGSGEWHGSWDAYFNAPEHKEEGATKRTNFSLTGPLGDEFSFRLYGNLDKTQADAWDINQGHQSARAGTYATTLPAGREGVINKDINGVVRWDFAPLQSLELEAGYSRQGNLYAGDTQNTNSDSYTRSKYGDETNRLYRQNYALTWNGGWDNGVTTSNWVQYEHTRNSRIPEGLAGGTEGKFNEKATQDFVDIDLDDVMLHSEVNLPIDFLVNQTLTLGTEWNQQRMKDLSSNTQALTGTNTGGAIDGVSTTDRSPYSKAEIFSLFAENNMELTDSTIVTPGLRFDHHSIVGNNWSPALNISQGLGDDFTLKMGIARAYKAPSLYQTNPNYILYSKGQGCYASAGGCYLQGNDDLKAETSINKEIGLEFKRDGWLAGVTWFRNDYRNKIEAGYVAVGQNAVGTDLYQWDNVPKAVVEGLEGSLNVPVSETVMWTNNITYMLKSENKTTGDRLSIIPEYTLNSTLSWQAREDLSMQTTFTWYGKQQPKKYNYKGQPAVGPETKEISPYSIVGLSATWDVTKNVSLTGGVDNLFDKRLWRAGNAQTTGDLAGANYIAGAGAYTYNEPGRTWYMSVNTHF" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 1 "EG10297-MONOMER" "polysaccharide co-polymerase family protein FepE" ["FepE"] "MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADHLV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG10299-MONOMER" "ferric enterobactin esterase" ["Fes", "enterochelin esterase"] "MTALKVGSESWWQSKHGPEWQRLNDEMFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQPQSMQRIAGTNVWQWTTQLNANWRGSYCFIPTERDDIFSVPSPDRLELREGWRKLLPQAIADPLNLQSWKGGRGHAVSALEMPQAPLQPGWDCPQAPEIPAKEIIWKSERLKKSRRVWIFTTGDATAEERPLAVLLDGEFWAQSMPVWPVLTSLTHRQQLPPAVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKAIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRGGQQEGVLLEKLKAGEVSAEGLRIVLEAGIREPMIMRANQALYAQLHPIKESIFWRQVDGGHDALCWRGGLMQGLIDLWQPLFHDRS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10300-MONOMER" "signal recognition particle protein component" ["Ffh", "P48"] "MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRSMKGMMPPGFPGR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"EG10302-MONOMER" "ferrichrome outer membrane transporter/phage receptor" ["TonA", "FhuA"] "MARSKTAQPKHSLRKIAVVVATAVSGMSVYAQAAVEPKEDTITVTAAPAPQESAWGPAATIAARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVSVGTRGASNTYDHLIIRGFAAEGQSQNNYLNGLKLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPGGLLNMVSKRPTTEPLKEVQFKAGTDSLFQTGFDFSDSLDDDGVYSYRLTGLARSANAQQKGSEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFNEGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVYGYGVCSDPANAYSKQCAALAPADKGHYLARKYVVDDEKLQNFSVDTQLQSKFATGDIDHTLLTGVDFMRMRNDINAWFGYDDSVPLLNLYNPVNTDFDFNAKDPANSGPYRILNKQKQTGVYVQDQAQWDKVLVTLGGRYDWADQESLNRVAGTTDKRDDKQFTWRGGVNYLFDNGVTPYFSYSESFEPSSQVGKDGNIFAPSKGKQYEVGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQVPKHMASLWADYTFFDGPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDREYVASCFNTYGCFWGAERQVVATATFRF" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 -"EG10306-MONOMER" "ferric coprogen/ferric rhodotorulic acid outer membrane transporter" ["FhuE", "ferric coprogen outer membrane receptor"] "MLSTQFNRDNQYQAITKPSLLAGCIALALLPSAAFAAPATEETVIVEGSATAPDDGENDYSVTSTSAGTKMQMTQRDIPQSVTIVSQQRMEDQQLQTLGEVMENTLGISKSQADSDRALYYSRGFQIDNYMVDGIPTYFESRWNLGDALSDMALFERVEVVRGATGLMTGTGNPSAAINMVRKHATSREFKGDVSAEYGSWNKERYVADLQSPLTEDGKIRARIVGGYQNNDSWLDRYNSEKTFFSGIVDADLGDLTTLSAGYEYQRIDVNSPTWGGLPRWNTDGSSNSYDRARSTAPDWAYNDKEINKVFMTLKQQFADTWQATLNATHSEVEFDSKMMYVDAYVNKADGMLVGPYSNYGPGFDYVGGTGWNSGKRKVDALDLFADGSYELFGRQHNLMFGGSYSKQNNRYFSSWANIFPDEIGSFYNFNGNFPQTDWSPQSLAQDDTTHMKSLYAATRVTLADPLHLILGARYTNWRVDTLTYSMEKNHTTPYAGLVFDINDNWSTYASYTSIFQPQNDRDSSGKYLAPITGNNYELGLKSDWMNSRLTTTLAIFRIEQDNVAQSTGTPIPGSNGETAYKAVDGTVSKGVEFELNGAITDNWQLTFGATRYIAEDNEGNAVNPNLPRTTVKMFTSYRLPVMPELTVGGGVNWQNRVYTDTVTPYGTFRAEQGSYALVDLFTRYQVTKNFSLQGNVNNLFDKTYDTNVEGSIVYGTPRNFSITGTYQF" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 +"EG10302-MONOMER" "ferrichrome outer membrane transporter/phage receptor" ["TonA", "FhuA"] "MARSKTAQPKHSLRKIAVVVATAVSGMSVYAQAAVEPKEDTITVTAAPAPQESAWGPAATIAARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVSVGTRGASNTYDHLIIRGFAAEGQSQNNYLNGLKLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPGGLLNMVSKRPTTEPLKEVQFKAGTDSLFQTGFDFSDSLDDDGVYSYRLTGLARSANAQQKGSEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFNEGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVYGYGVCSDPANAYSKQCAALAPADKGHYLARKYVVDDEKLQNFSVDTQLQSKFATGDIDHTLLTGVDFMRMRNDINAWFGYDDSVPLLNLYNPVNTDFDFNAKDPANSGPYRILNKQKQTGVYVQDQAQWDKVLVTLGGRYDWADQESLNRVAGTTDKRDDKQFTWRGGVNYLFDNGVTPYFSYSESFEPSSQVGKDGNIFAPSKGKQYEVGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQVPKHMASLWADYTFFDGPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDREYVASCFNTYGCFWGAERQVVATATFRF" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 1 +"EG10306-MONOMER" "ferric coprogen/ferric rhodotorulic acid outer membrane transporter" ["FhuE", "ferric coprogen outer membrane receptor"] "MLSTQFNRDNQYQAITKPSLLAGCIALALLPSAAFAAPATEETVIVEGSATAPDDGENDYSVTSTSAGTKMQMTQRDIPQSVTIVSQQRMEDQQLQTLGEVMENTLGISKSQADSDRALYYSRGFQIDNYMVDGIPTYFESRWNLGDALSDMALFERVEVVRGATGLMTGTGNPSAAINMVRKHATSREFKGDVSAEYGSWNKERYVADLQSPLTEDGKIRARIVGGYQNNDSWLDRYNSEKTFFSGIVDADLGDLTTLSAGYEYQRIDVNSPTWGGLPRWNTDGSSNSYDRARSTAPDWAYNDKEINKVFMTLKQQFADTWQATLNATHSEVEFDSKMMYVDAYVNKADGMLVGPYSNYGPGFDYVGGTGWNSGKRKVDALDLFADGSYELFGRQHNLMFGGSYSKQNNRYFSSWANIFPDEIGSFYNFNGNFPQTDWSPQSLAQDDTTHMKSLYAATRVTLADPLHLILGARYTNWRVDTLTYSMEKNHTTPYAGLVFDINDNWSTYASYTSIFQPQNDRDSSGKYLAPITGNNYELGLKSDWMNSRLTTTLAIFRIEQDNVAQSTGTPIPGSNGETAYKAVDGTVSKGVEFELNGAITDNWQLTFGATRYIAEDNEGNAVNPNLPRTTVKMFTSYRLPVMPELTVGGGVNWQNRVYTDTVTPYGTFRAEQGSYALVDLFTRYQVTKNFSLQGNVNNLFDKTYDTNVEGSIVYGTPRNFSITGTYQF" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 1 "EG10307-MONOMER" "putative adenosine monophosphate—protein transferase Fic" ["FicT", "Fic", "stationary-phase protein"] "MSDKFGEGRDPYLYPGLDIMRNRLNIRQQQRLEQAAYEMTALRAATIELGPLVRGLPHLRTIHRQLYQDIFDWAGQLREVDIYQGDTPFCHFAYIEKEGNALMQDLEEEGYLVGLEKAKFVERLAHYYCEINVLHPFRVGSGLAQRIFFEQLAIHAGYQLSWQGIEKEAWNQANQSGAMGDLTALQMIFSKVVSEAGESE" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10308-MONOMER" "type 1 fimbriae major subunit" ["PilA", "FimD", "FimA"] "MKIKTLAIVVLSALSLSSTAALAAATTVNGGTVHFKGEVVNAACAVDAGSVDQTVQLGQVRTASLAQEGATSSAVGFNIQLNDCDTNVASKAAVAFLGTAIDAGHTNVLALQSSAAGSATNVGVQILDRTGAALTLDGATFSSETTLNNGTNTIPFQARYFATGAATPGAANADATFKVQYQ" [] ["CCO-EXTRACELLULAR", "CCO-PILUS"] 0 [] {} 1 "EG10309-MONOMER" "Type 1 fimbriae regulatory protein FimB" ["Pil", "FimB", "regulator for fimA"] "MKNKADNKKRNFLTHSEIESLLKAANTGPHAARNYCLTLLCFIHGFRASEICRLRISDIDLKAKCIYIHRLKKGFSTTHPLLNKEVQALKNWLSIRTSYPHAESEWVFLSRKGNPLSRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRARGRQRHAVL" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -468,12 +468,12 @@ "EG10315-MONOMER" "type 1 fimbriae D-mannose specific adhesin" ["PilE", "FimH", "type 1 fimbrin minor protein"] "MKRVITLFAVLLMGWSVNAWSFACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPTGGCDVSARDVTVTLPDYPGSVPIPLTVYCAKSQNLGYYLSGTTADAGNSIFTNTASFSPAQGVGVQLTRNGTIIPANNTVSLGAVGTSAVSLGLTANYARTGGQVTAGNVQSIIGVTFVYQ" ["CCO-PILUS"] ["CCO-EXTRACELLULAR", "CCO-PILUS"] 0 [] {} 1 "EG10320-MONOMER" "DNA-binding transcriptional dual regulator FlhD" ["FlbB", "FlhD"] "MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDVNQPEEALRKKRA" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10321-MONOMER" "flagellar filament structural protein" ["Hag", "FlaF", "FliC", "flagellin"] "MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGALSEINNNLQRVRELTVQATTGTNSESDLSSIQDEIKSRLDEIDRVSGQTQFNGVNVLAKNGSMKIQVGANDNQTITIDLKQIDAKTLGLDGFSVKNNDTVTTSAPVTAFGATTTNNIKLTGITLSTEAATDTGGTNPASIEGVYTDNGNDYYAKITGGDNDGKYYAVTVANDGTVTMATGATANATVTDANTTKATTITSGGTPVQIDNTAGSATANLGAVSLVKLQDSKGNDTDTYALKDTNGNLYAADVNETTGAVSVKTITYTDSSGAASSPTAVKLGGDDGKTEVVDIDGKTYDSADLNGGNLQTGLTAGGEALTAVANGKTTDPLKALDDAIASVDKFRSSLGAVQNRLDSAVTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLLQG" [] ["CCO-EXTRACELLULAR", "CCO-CELL-PROJECTION"] 1 [] {} 1 -"EG10322-MONOMER" "flagellar protein FliL" ["FliL"] "MTDYAISKKSKRSLWIPILVFITLAACASAGYSYWHSHQVAADDKAQQRVVPSPVFYALDTFTVNLGDADRVLYIGITLRLKDEATRSRLSEYLPEVRSRLLLLFSRQDAAVLATEEGKKNLIAEIKTTLSTPLVAGQPKQDVTDVLYTAFILR" [] ["CCO-CELL-PROJECTION", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 +"EG10322-MONOMER" "flagellar protein FliL" ["FliL"] "MTDYAISKKSKRSLWIPILVFITLAACASAGYSYWHSHQVAADDKAQQRVVPSPVFYALDTFTVNLGDADRVLYIGITLRLKDEATRSRLSEYLPEVRSRLLLLFSRQDAAVLATEEGKKNLIAEIKTTLSTPLVAGQPKQDVTDVLYTAFILR" [] ["CCO-CELL-PROJECTION", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG10329-MONOMER" "DNA-formamidopyrimidine glycosylase" ["Fpg", "MutM", "8-oxoguanine DNA glycosylase"] "MPELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEIYRLSDQPVLSVQRRAKYLLLELPEGWIIIHLGMSGSLRILPEELPPEKHDHVDLVMSNGKVLRYTDPRRFGAWLWTKELEGHNVLTHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRQCQK" [] ["CCO-CYTOSOL"] 1 [] {} 0 "EG10335-MONOMER" "ribosome-recycling factor" ["Rrf", "Frr", "ribosome release factor", "RF4", "release factor 4", "RR factor"] "MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAELMQF" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG10339-MONOMER" "cell division protein FtsA" ["DivA", "FtsA", "essential cell division protein FtsA"] "MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSRGMDKGGVNDLESVVKCVQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEEEVTQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHLITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYSVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRPPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEKLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKESHLNGEAEVEKRVTASVGSWIKRLNSWLRKEF" ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG10341-MONOMER" "peptidoglycan DD-transpeptidase FtsI" ["Sep", "PbpB", "FtsI", "PBP3", "essential cell division protein FtsI", "penicillin-binding protein 3"] "MKAAAKTQKPKRQEEHANFISWRFALLCGCILLALAFLLGRVAWLQVISPDMLVKEGDMRSLRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAGGISVGDRWKALANALNIPLDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIHLREESRRYYPSGEVTAHLIGFTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVIEDISSTDSQAAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMANSPSYNPNNLSGTPKEAMRNRTITDVFEPGSTVKPMVVMTALQRGVVRENSVLNTIPYRINGHEIKDVARYSELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATNLGLVGERSGLYPQKQRWSDIERATFSFGYGLMVTPLQLARVYATIGSYGIYRPLSITKVDPPVPGERVFPESIVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGTAKKVGPDGRYINKYIAYTAGVAPASQPRFALVVVINDPQAGKYYGGAVSAPVFGAIMGGVLRTMNIEPDALTTGDKNEFVINQGEGTGGRS" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG10342-MONOMER" "cell division protein FtsQ" ["FtsQ", "essential cell division protein FtsQ"] "MSQAALNTRNSEEEVSSRRNNGTRLAGILFLLTVLTTVLVSGWVVLGWMEDAQRLPLSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQWPDELKIHLVEYVPIARWNDQHMVDAEGNTFSVPPERTSKQVLPMLYGPEGSANEVLQGYREMGQMLAKDRFTLKEAAMTARRSWQLTLNNDIKLNLGRGDTMKRLARFVELYPVLQQQAQTDGKRISYVDLRYDSGAAVGWAPLPPEESTQQQNQAQAEQQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"EG10339-MONOMER" "cell division protein FtsA" ["DivA", "FtsA", "essential cell division protein FtsA"] "MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSRGMDKGGVNDLESVVKCVQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEEEVTQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHLITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYSVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRPPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEKLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKESHLNGEAEVEKRVTASVGSWIKRLNSWLRKEF" ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG10341-MONOMER" "peptidoglycan DD-transpeptidase FtsI" ["Sep", "PbpB", "FtsI", "PBP3", "essential cell division protein FtsI", "penicillin-binding protein 3"] "MKAAAKTQKPKRQEEHANFISWRFALLCGCILLALAFLLGRVAWLQVISPDMLVKEGDMRSLRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAGGISVGDRWKALANALNIPLDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIHLREESRRYYPSGEVTAHLIGFTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVIEDISSTDSQAAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMANSPSYNPNNLSGTPKEAMRNRTITDVFEPGSTVKPMVVMTALQRGVVRENSVLNTIPYRINGHEIKDVARYSELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATNLGLVGERSGLYPQKQRWSDIERATFSFGYGLMVTPLQLARVYATIGSYGIYRPLSITKVDPPVPGERVFPESIVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGTAKKVGPDGRYINKYIAYTAGVAPASQPRFALVVVINDPQAGKYYGGAVSAPVFGAIMGGVLRTMNIEPDALTTGDKNEFVINQGEGTGGRS" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG10342-MONOMER" "cell division protein FtsQ" ["FtsQ", "essential cell division protein FtsQ"] "MSQAALNTRNSEEEVSSRRNNGTRLAGILFLLTVLTTVLVSGWVVLGWMEDAQRLPLSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQWPDELKIHLVEYVPIARWNDQHMVDAEGNTFSVPPERTSKQVLPMLYGPEGSANEVLQGYREMGQMLAKDRFTLKEAAMTARRSWQLTLNNDIKLNLGRGDTMKRLARFVELYPVLQQQAQTDGKRISYVDLRYDSGAAVGWAPLPPEESTQQQNQAQAEQQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "EG10343-MONOMER" "16S rRNA m2G966 methyltransferase" ["YhhF", "RsmD"] "MKKPNHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVENGLPTVPANWSLHREKVAGQVAYRLYQREAQGESDAD" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10344-MONOMER" "peptidoglycan glycosyltransferase FtsW" ["FtsW", "essential cell division protein FtsW", "SEDS family protein FtsW"] "MRLSLPRLKMPRLPGFSILVWISTALKGWVMGSREKDTDSLIMYDRTLLWLTFGLAAIGFIMVTSASMPIGQRLTNDPFFFAKRDGVYLILAFILAIITLRLPMEFWQRYSATMLLGSIILLMIVLVVGSSVKGASRWIDLGLLRIQPAELTKLSLFCYIANYLVRKGDEVRNNLRGFLKPMGVILVLAVLLLAQPDLGTVVVLFVTTLAMLFLAGAKLWQFIAIIGMGISAVVLLILAEPYRIRRVTAFWNPWEDPFGSGYQLTQSLMAFGRGELWGQGLGNSVQKLEYLPEAHTDFIFAIIGEELGYVGVVLALLMVFFVAFRAMSIGRKALEIDHRFSGFLACSIGIWFSFQALVNVGAAAGMLPTKGLTLPLISYGGSSLLIMSTAIMMLLRIDYETRLEKAQAFVRGSR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG10346-MONOMER" "signal recognition particle receptor" ["FtsY", "SRP receptor"] "MAKEKKRGFFSWLGFGQKEQTPEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQPQAHTEAEAETFAADVVEVTEQVAESEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEAVSPEEWQAEAETVEIVEAAEEEAAKEEITDEELETALAAEAAEEAVMVVPPAEEEQPVEEIAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED" ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 1 [] {} 0 @@ -507,9 +507,9 @@ "EG10458-MONOMER" "type I restriction enzyme EcoKI methylase subunit" ["Hsp", "Hsm", "HsdM", "host modification, DNA methylase M", "type I restriction enzyme EcoKI M protein", "type I restriction enzyme EcoKI methyltransferase component"] "MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFGGVKE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10459-MONOMER" "type I restriction enzyme EcoKI endonuclease subunit" ["Hsr", "Hsp", "HsdR", "type I restriction enzyme EcoKI R protein", "host restriction endonuclease R"] "MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDELA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10460-MONOMER" "type I restriction enzyme EcoKI specificity subunit" ["Hss", "Hsp", "HsdS", "specificity determinant for hsdM and hsdR"] "MSAGKLPEGWVIAPVSTVTTLIRGVTYKKEQAINYLKDDYLPLIRANNIQNGKFDTTDLVFVPKNLVKESQKISPEDIVIAMSSGSKSVVGKSAHQHLPFECSFGAFCGVLRPEKLIFSGFIAHFTKSSLYRNKISSLSAGANINNIKPASFDLINIPIPPLAEQKIIAEKLDTLLAQVDSTKARFEQIPQILKRFRQAVLGGAVNGKLTEKWRNFEPQHSVFKKLNFESILTELRNGLSSKPNESGVGHPILRISSVRAGHVDQNDIRFLECSESELNRHKLQDGDLLFTRYNGSLEFVGVCGLLKKLQHQNLLYPDKLIRARLTKDALPEYIEIFFSSPSARNAMMNCVKTTSGQKGISGKDIKSQVVLLPPVKEQAEIVRRVEQLFAYADTIEKQVNNALARVNNLTQSILAKAFRGELTAQWRAENPDLISGENSAAALLEKIKAERAASGGKKASRKKS" [] ["CCO-CYTOSOL"] 1 [] {} 1 -"EG10461-MONOMER" "chaperone protein HtpG" ["HtpG", "C62.5", "Hsp90", "heat shock protein 90"] "MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDGETVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQKVPEVKYIFELNPDHVLVKRAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLVS" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 1 -"EG10462-MONOMER" "protease HtpX" ["HtpX", "zinc dependent endoprotease"] "MMRIALFLLTNLAVMVVFGLVLSLTGIQSSSVQGLMIMALLFGFGGSFVSLLMSKWMALRSVGGEVIEQPRNERERWLVNTVATQARQAGIAMPQVAIYHAPDINAFATGARRDASLVAVSTGLLQNMSPDEAEAVIAHEISHIANGDMVTMTLIQGVVNTFVIFISRILAQLAAGFMGGNRDEGEESNGNPLIYFAVATVLELVFGILASIITMWFSRHREFHADAGSAKLVGREKMIAALQRLKTSYEPQEATSMMALCINGKSKSLSELFMTHPPLDKRIEALRTGEYLK" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"ZN+2": 1} 0 -"EG10463-MONOMER" "periplasmic serine endoprotease DegP" ["Ptd", "protease Do", "HtrA", "DegP"] "MKKTTLALSALALSLGLALSPLSATAAETSSATTAQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ" ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] ["CCO-PERI-BAC", "CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"EG10461-MONOMER" "chaperone protein HtpG" ["HtpG", "C62.5", "Hsp90", "heat shock protein 90"] "MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDGETVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQKVPEVKYIFELNPDHVLVKRAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLVS" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 +"EG10462-MONOMER" "protease HtpX" ["HtpX", "zinc dependent endoprotease"] "MMRIALFLLTNLAVMVVFGLVLSLTGIQSSSVQGLMIMALLFGFGGSFVSLLMSKWMALRSVGGEVIEQPRNERERWLVNTVATQARQAGIAMPQVAIYHAPDINAFATGARRDASLVAVSTGLLQNMSPDEAEAVIAHEISHIANGDMVTMTLIQGVVNTFVIFISRILAQLAAGFMGGNRDEGEESNGNPLIYFAVATVLELVFGILASIITMWFSRHREFHADAGSAKLVGREKMIAALQRLKTSYEPQEATSMMALCINGKSKSLSELFMTHPPLDKRIEALRTGEYLK" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {"ZN+2": 1} 0 +"EG10463-MONOMER" "periplasmic serine endoprotease DegP" ["Ptd", "protease Do", "HtrA", "DegP"] "MKKTTLALSALALSLGLALSPLSATAAETSSATTAQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ" ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] ["CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG10466-MONOMER" "DNA-binding protein HU-α" ["HupA", "transcriptional dual regulator HU-α (HU-2)"] "MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-BAC-NUCLEOID", "CCO-CYTOSOL"] 0 [] {} 1 "EG10467-MONOMER" "DNA-binding protein HU-β" ["DpeA", "HopD", "DbhB", "HupB", "transcriptional dual regulator HU-β, NS1 (HU-1)"] "MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10471-MONOMER" "putative hydrogenase 1 maturation protease HyaD" ["HyaD", "protein involved in processing of HyaA and HyaB proteins"] "MSEQRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQGLNLLGYVESASHLLILDAIDYGLEPGTLRTYAGERIPAYLSAKKMSLHQNSFSEVLALADIRGHLPAHIALVGLQPAMLDDYGGSLSELAREQLPAAEQAALAQLAAWGIVPQPANESRCLNYDCLSMENYEGVRLRQYRMTQEEQG" [] ["CCO-CYTOSOL"] 0 [] {"NI+2": 1} 0 @@ -517,8 +517,8 @@ "EG10473-MONOMER" "protein HyaF" ["HyaF", "protein involved in nickel incorporation into hydrogenase 1 proteins"] "MSETFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCAHSPQVIALLNELQHQLSERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQADDSESEIQEAIFCGLWRVRRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPPIDGLMNGLPLAHELLAHVRNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIGYGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVCQWLAEAAPT" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10474-MONOMER" "regulator of the transcriptional regulator FhlA" ["HevA", "HycA"] "MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHHAMSCAPDKELCFVLFEHFRIYVTLADGFNSHTIEYYVETKDGEDKQRIAQAQLSIDGMIDGKVNIRDREQVLEHYLEKIAGVYDSLYTAIENNVPVNLSQLVKGQSPAA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10481-MONOMER" "formate hydrogenlyase assembly protein" ["HevH", "HycH"] "MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHDIHQENAIYLMVRRLRD" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG10483-MONOMER" "hydrogenase 3 nickel incorporation protein HypA" ["HypA", "accessory protein for nickel incorporation into hydrogenase 3"] "MHEITLCQRALELIEQQAAKHGAKRVTGVWLKIGAFSCVETSSLAFCFDLVCRGSVAEGCKLHLEEQEAECWCETCQQYVTLLTQRVRRCPQCHGDMLQIVADDGLQIRRIEIDQE" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"NI+2": 1, "ZN+2": 1} 1 -"EG10484-MONOMER" "hydrogenase isoenzymes nickel incorporation protein HypB" ["HydB", "HypB", "accessory protein for nickel incorporation into hydrogenase isoenzymes"] "MCTTCGCGEGNLYIEGDEHNPHSAFRSAPFAPAARPKMKITGIKAPEFTPSQTEEGDLHYGHGEAGTHAPGMSQRRMLEVEIDVLDKNNRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRLPLDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQRCA" [] ["CCO-CYTOSOL"] 0 [] {"NI+2": 2, "ZN+2": 1} 1 +"EG10483-MONOMER" "hydrogenase 3 Ni(2+) incorporation protein HypA" ["HypA", "accessory protein for nickel incorporation into hydrogenase 3", "hydrogenase 3 nickel incorporation protein HypA"] "MHEITLCQRALELIEQQAAKHGAKRVTGVWLKIGAFSCVETSSLAFCFDLVCRGSVAEGCKLHLEEQEAECWCETCQQYVTLLTQRVRRCPQCHGDMLQIVADDGLQIRRIEIDQE" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"NI+2": 1, "ZN+2": 1} 1 +"EG10484-MONOMER" "hydrogenase isoenzymes Ni(2+) incorporation protein HypB" ["HydB", "HypB", "accessory protein for nickel incorporation into hydrogenase isoenzymes"] "MCTTCGCGEGNLYIEGDEHNPHSAFRSAPFAPAARPKMKITGIKAPEFTPSQTEEGDLHYGHGEAGTHAPGMSQRRMLEVEIDVLDKNNRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRLPLDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQRCA" [] ["CCO-CYTOSOL"] 0 [] {"NI+2": 2, "ZN+2": 1} 1 "EG10485-MONOMER" "hydrogenase maturation factor HypC" ["HypC", "HypC, protein involved in hydrogenase 3 maturation"] "MCIGVPGQIRTIDGNQAKVDVCGIQRDVDLTLVGSCDENGQPRVGQWVLVHVGFAMSVINEAEARDTLDALQNMFDVEPDVGALLYGEEK" [] ["CCO-CYTOSOL"] 1 [] {} 1 "EG10486-MONOMER" "Fe-(CN)2CO cofactor assembly scaffold protein HypD" ["HydF", "HypD", "HypD, scaffold protein for assembly of the Fe-(CN)2CO cofactor"] "MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQESEA" [] ["CCO-CYTOSOL"] 0 [] {"FE+2": 1} 1 "EG10487-MONOMER" "carbamoyl dehydratase HypE" ["HypE", "HydB", "hydrogenase maturation protein, carbamoyl dehydratase"] "MNNIQLAHGSGGQAMQQLINSLFMEAFANPWLAEQEDQARLDLAQLVAEGDRLAFSTDSYVIDPLFFPGGNIGKLAICGTANDVAVSGAIPRYLSCGFILEEGLPMETLKAVVTSMAETARAAGIAIVTGDTKVVQRGAVDKLFINTAGMGAIPANIHWGAQTLTAGDVLLVSGTLGDHGATILNLREQLGLDGELVSDCAVLTPLIQTLRDIPGVKALRDATRGGVNAVVHEFAAACGCGIELSEAALPVKPAVRGVCELLGLDALNFANEGKLVIAVERNAAEQVLAALHSHPLGKDAALIGEVVERKGVRLAGLYGVKRTLDLPHAEPLPRIC" [] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -526,16 +526,16 @@ "EG10490-MONOMER" "DNA-binding transcriptional dual regulator ArgP" ["ArgP", "IciA"] "MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENMFGQPLLVRTVPPRPTEQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNADSLATWLLPALAPVLADSPIRLNLQVEDETRTQERLRRGEVVGAVSIQHQALPSCLVDKLGALDYLFVSSKPFAEKYFPNGVTRSALLKAPVVAFDHLDDMHQAFLQQNFDLPPGSVPCHIVNSSEAFVQLARQGTTCCMIPHLQIEKELASGELIDLTPGLFQRRMLYWHRFAPESRMMRKVTDALLDYGHKVLRQD" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10504-MONOMER" "translation initiation factor IF-1" ["InfA", "IF1", "protein chain initiation factor IF-1"] "MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "EG10505-MONOMER" "translation initiation factor IF-2" ["SsyG", "InfB", "IF-2", "protein chain initiation factor IF2"] "MTDVTIKTLAAERQTSVERLVQQFADAGIRKSADDSVSAQEKQTLIDHLNQKNSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERLAAEEQAQREAEEQARREAEESAKREAQQKAEREAAEQAKREAAEQAKREAAEKDKVSNQQDDMTKNAQAEKARREQEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTDNAEPTEDSSDYHVTTSQHARQAEDESDREVEGGRGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRTGDVIEVFEIIEIQRTIA" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG10506-MONOMER" "translation initiation factor IF-3" ["Fit", "SrjA", "InfC", "IF3", "protein chain initiation factor IF-3"] "MKGGKRVQTARPNRINGEIRAQEVRLTGLEGEQLGIVSLREALEKAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKSSKEQKKKQKVIQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVESFPTKIEGRQMIMVLAPKKKQ" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-MEMBRANE", "CCO-CYTOSOL"] 1 [] {} 0 +"EG10506-MONOMER" "translation initiation factor IF-3" ["Fit", "SrjA", "InfC", "IF3", "protein chain initiation factor IF-3"] "MKGGKRVQTARPNRINGEIRAQEVRLTGLEGEQLGIVSLREALEKAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKSSKEQKKKQKVIQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVESFPTKIEGRQMIMVLAPKKKQ" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "EG10507-MONOMER" "DLP12 prophage; putative integrase" ["Int", "IntD"] "MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIMEDIKKA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG10513-MONOMER" "K+ transporting P-type ATPase subunit KdpA" ["KdpA", "Kac"] "MAAQGFLLIATFLLVLMVLARPLGSGLARLINDIPLPGTTGVERVLFRALGVSDREMNWKQYLCAILGLNMLGLAVLFFMLLGQHYLPLNPQQLPGLSWDLALNTAVSFVTNTNWQSYSGETTLSYFSQMAGLTVQNFLSAASGIAVIFALIRAFTRQSMSTLGNAWVDLLRITLWVLVPVALLIALFFIQQGALQNFLPYQAVNTVEGAQQLLPMGPVASQEAIKMLGTNGGGFFNANSSHPFENPTALTNFVQMLAIFLIPTALCFAFGEVMGDRRQGRMLLWAMSVIFVICVGVVMWAEVQGNPHLLALGTDSSINMEGKESRFGVLVSSLFAVVTTAASCGAVIAMHDSFTALGGMVPMWLMQIGEVVFGGVGSGLYGMMLFVLLAVFIAGLMIGRTPEYLGKKIDVREMKLTALAILVTPTLVLMGAALAMMTDAGRSAMLNPGPHGFSEVLYAVSSAANNNGSAFAGLSANSPFWNCLLAFCMFVGRFGVIIPVMAIAGSLVSKKSQAASSGTLPTHGPLFVGLLIGTVLLVGALTFIPALALGPVAEYLS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"EG10513-MONOMER" "K+ transporting P-type ATPase subunit KdpA" ["KdpA", "Kac"] "MAAQGFLLIATFLLVLMVLARPLGSGLARLINDIPLPGTTGVERVLFRALGVSDREMNWKQYLCAILGLNMLGLAVLFFMLLGQHYLPLNPQQLPGLSWDLALNTAVSFVTNTNWQSYSGETTLSYFSQMAGLTVQNFLSAASGIAVIFALIRAFTRQSMSTLGNAWVDLLRITLWVLVPVALLIALFFIQQGALQNFLPYQAVNTVEGAQQLLPMGPVASQEAIKMLGTNGGGFFNANSSHPFENPTALTNFVQMLAIFLIPTALCFAFGEVMGDRRQGRMLLWAMSVIFVICVGVVMWAEVQGNPHLLALGTDSSINMEGKESRFGVLVSSLFAVVTTAASCGAVIAMHDSFTALGGMVPMWLMQIGEVVFGGVGSGLYGMMLFVLLAVFIAGLMIGRTPEYLGKKIDVREMKLTALAILVTPTLVLMGAALAMMTDAGRSAMLNPGPHGFSEVLYAVSSAANNNGSAFAGLSANSPFWNCLLAFCMFVGRFGVIIPVMAIAGSLVSKKSQAASSGTLPTHGPLFVGLLIGTVLLVGALTFIPALALGPVAEYLS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "EG10515-MONOMER" "K+ transporting P-type ATPase subunit KdpC" ["KdpC", "Kac"] "MSGLRPALSTFIFLLLITGGVYPLLTTVLGQWWFPWQANGSLIREGDTVRGSALIGQNFTGNGYFHGRPSATAEMPYNPQASGGSNLAVSNPELDKLIAARVAALRAANPDASASVPVELVTASASGLDNNITPQAAAWQIPRVAKARNLSVEQLTQLIAKYSQQPLVKYIGQPVVNIVELNLALDKLDE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG10523-MONOMER" "16S rRNA (A1518/A1519-N6-dimethyltransferase" ["KsgA", "RsmA", "ribosomal RNA small subunit methyltransferase A", "rRNA small subunit methyltransferase A", "16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase", "16S rRNA m62A1518,m62A1519 dimethyltransferase"] "MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPLQES" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 -"EG10528-MONOMER" "maltose outer membrane channel / phage lambda receptor protein" ["MalL", "MalB", "LamB"] "MMITLRKLPLAVAVAAGVMSAQAMAVDFHGYARSGIGWTGSGGEQQCFQTTGAQSKYRLGNECETYAELKLGQEVWKEGDKSFYFDTNVAYSVAQQNDWEATDPAFREANVQGKNLIEWLPGSTIWAGKRFYQRHDVHMIDFYYWDISGPGAGLENIDVGFGKLSLAATRSSEAGGSSSFASNNIYDYTNETANDVFDVRLAQMEINPGGTLELGVDYGRANLRDNYRLVDGASKDGWLFTAEHTQSVLKGFNKFVVQYATDSMTSQGKGLSQGSGVAFDNEKFAYNINNNGHMLRILDHGAISMGDNWDMMYVGMYQDINWDNDNGTKWWTVGIRPMYKWTPIMSTVMEIGYDNVESQRTGDKNNQYKITLAQQWQAGDSIWSRPAIRVFATYAKWDEKWGYDYTGNADNNANFGKAVPADFNGGSFGRGDSDEWTFGAQMEIWW" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 -"EG10529-MONOMER" "30S ribosomal subunit biogenesis factor LepA" ["LepA", "EF4", "elongation factor 4"] "MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSREVIYVDSPSKLPAVNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINGERVDALALITHRDNSQNRGRELVEKMKDLIPRQQFDIAIQAAIGTHIIARSTVKQLRKNVLAKCYGGDISRKKKLLQKQKEGKKRMKQIGNVELPQEAFLAILHVGKDNK" ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG10528-MONOMER" "maltose outer membrane channel / phage lambda receptor protein" ["MalL", "MalB", "LamB"] "MMITLRKLPLAVAVAAGVMSAQAMAVDFHGYARSGIGWTGSGGEQQCFQTTGAQSKYRLGNECETYAELKLGQEVWKEGDKSFYFDTNVAYSVAQQNDWEATDPAFREANVQGKNLIEWLPGSTIWAGKRFYQRHDVHMIDFYYWDISGPGAGLENIDVGFGKLSLAATRSSEAGGSSSFASNNIYDYTNETANDVFDVRLAQMEINPGGTLELGVDYGRANLRDNYRLVDGASKDGWLFTAEHTQSVLKGFNKFVVQYATDSMTSQGKGLSQGSGVAFDNEKFAYNINNNGHMLRILDHGAISMGDNWDMMYVGMYQDINWDNDNGTKWWTVGIRPMYKWTPIMSTVMEIGYDNVESQRTGDKNNQYKITLAQQWQAGDSIWSRPAIRVFATYAKWDEKWGYDYTGNADNNANFGKAVPADFNGGSFGRGDSDEWTFGAQMEIWW" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 1 +"EG10529-MONOMER" "30S ribosomal subunit biogenesis factor LepA" ["LepA", "EF4", "elongation factor 4"] "MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSREVIYVDSPSKLPAVNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINGERVDALALITHRDNSQNRGRELVEKMKDLIPRQQFDIAIQAAIGTHIIARSTVKQLRKNVLAKCYGGDISRKKKLLQKQKEGKKRMKQIGNVELPQEAFLAILHVGKDNK" ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG10530-MONOMER" "signal peptidase I" ["Lep", "LepB", "LP1", "SPase I", "leader peptidase (signal peptidase I)"] "MANMFALILVIATLVTGILWCVDKFFFAPKRRERQAAAQAAAGDSLDKATLKKVAPKPGWLETGASVFPVLAIVLIVRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGLRLSRIGGIH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG10534-MONOMER" "DNA ligase" ["Lop", "PdeC", "DnaL", "LigA", "Lig"] "MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 -"EG10535-MONOMER" "e14 prophage; cell death peptidase Lit" ["Lit", "Lit, cell death peptidase; phage exclusion"] "MRSPICHLFSAINSSPFKIAPEKEQDLKTIVDDKKIIISVVSEPGFNIRVRKNESNNSHEIVLTVASLEYIWAFSNFFWVFTQEYSKSQKNNDEHFDLTGKNRLKKSDELLKWARKNLQTTGCESWPKKCPKPEAYLQGSEDSQVASEIFLCAIAWILHHEISHVVLQHPLVTTAFSTQEEREADSHATKWILGNLYESAPELKKRALGIATAVLCIQSLEVENYFCLQNTHPAAYERIYSNISCYPVGNEELIEALCTVMLQYLFHGKNINVNLDGESFSSILGDLLCDISRLTSN" [] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG10535-MONOMER" "e14 prophage; cell death peptidase Lit" ["Lit", "Lit, cell death peptidase; phage exclusion"] "MRSPICHLFSAINSSPFKIAPEKEQDLKTIVDDKKIIISVVSEPGFNIRVRKNESNNSHEIVLTVASLEYIWAFSNFFWVFTQEYSKSQKNNDEHFDLTGKNRLKKSDELLKWARKNLQTTGCESWPKKCPKPEAYLQGSEDSQVASEIFLCAIAWILHHEISHVVLQHPLVTTAFSTQEEREADSHATKWILGNLYESAPELKKRALGIATAVLCIQSLEVENYFCLQNTHPAAYERIYSNISCYPVGNEELIEALCTVMLQYLFHGKNINVNLDGESFSSILGDLLCDISRLTSN" [] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG10542-MONOMER" "Lon protease" ["Muc", "Dir", "Deg", "LopA", "CapR", "Lon", "DNA-binding, ATP-dependent protease La"] "MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGMQVVTAK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "EG10544-MONOMER" "murein lipoprotein" ["MlpA", "Lpp"] "MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK" ["CCO-MEMBRANE", "CCO-PERI-BAC"] ["CCO-OUTER-MEM", "CCO-EXTRACELLULAR", "CCO-MEMBRANE"] 0 [] {} 1 "EG10548-MONOMER" "lipoprotein signal peptidase" ["LspA", "Lsp", "signal peptidase II", "leader peptidase II", "SPase II", "diacylglycerol prolipoprotein signal peptidase", "premurein-leader peptidase", "prolipoprotein signal peptidase"] "MSQSICSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVPLFPSLNLHYARNYGAAFSFLADSGGWQRWFFAGIAIGISVILAVMMYRSKATQKLNNIAYALIIGGALGNLFDRLWHGFVVDMIDFYVGDWHFATFNLADTAICVGAALIVLEGFLPSRAKKQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -545,21 +545,21 @@ "EG10571-MONOMER" "antitoxin of the MazF-MazE toxin-antitoxin system MazE" ["MazE", "ChpR", "ChpAI"] "MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10572-MONOMER" "nucleoside triphosphate pyrophosphohydrolase" ["MazG"] "MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "EG10573-MONOMER" "e14 prophage; Type IV methyl-directed restriction enzyme EcoKMcrA" ["RglA", "McrA", "restriction of DNA at 5-methylcytosine residues", "EcoKMcrA", "5-methylcytosine-specific restriction enzyme McrA"] "MHVFDNNGIELKAECSIGEEDGVYGLILESWGPGDRNKDYNIALDYIIERLVDSGVSQVVVYLASSSVRKHMHSLDERKIHPGEYFTLIGNSPRDIRLKMCGYQAYFSRTGRKEIPSGNRTKRILINVPGIYSDSFWASIIRGELSELSQPTDDESLLNMRVSKLIKKTLSQPEGSRKPVEVERLQKVYVRDPMVKAWILQQSKGICENCGKNAPFYLNDGNPYLEVHHVIPLSSGGADTTDNCVALCPNCHRELHYSKNAKELIEMLYVNINRLQK" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG10574-MONOMER" "Type IV methyl-directed restriction enzyme EcoKMcrB subunit" ["RglB", "McrB", "MrcB subunit of 5-methylcytosine restriction system", "McrBL", "5-methylcytosine-specific restriction enzyme subunit McrB"] "MESIQPWIEKFIKQAQQQRSQSTKDYPTSYRNLRVKLSFGYGNFTSIPWFAFLGEGQEASNGIYPVILYYKDFDELVLAYGISDTNEPHAQWQFSSDIPKTIAEYFQATSGVYPKKYGQSYYACSQKVSQGIDYTRFASMLDNIINDYKLIFNSGKSVIPPMSKTESYCLEDALNDLFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYIFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLLNKKAEPSFVESLCQKMNELNQEISKEATILGKGFRIGHSYFCCGLEDGTSPDTQWLNEIVMTDIAPLLEEYFFDDPYKQQKWTNKLLGDS" [] [] 1 [] {} 1 +"EG10574-MONOMER" "Type IV methyl-directed restriction enzyme EcoKMcrB subunit" ["RglB", "McrB", "MrcB subunit of 5-methylcytosine restriction system", "McrB-L", "5-methylcytosine-specific restriction enzyme subunit McrB"] "MESIQPWIEKFIKQAQQQRSQSTKDYPTSYRNLRVKLSFGYGNFTSIPWFAFLGEGQEASNGIYPVILYYKDFDELVLAYGISDTNEPHAQWQFSSDIPKTIAEYFQATSGVYPKKYGQSYYACSQKVSQGIDYTRFASMLDNIINDYKLIFNSGKSVIPPMSKTESYCLEDALNDLFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYIFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLLNKKAEPSFVESLCQKMNELNQEISKEATILGKGFRIGHSYFCCGLEDGTSPDTQWLNEIVMTDIAPLLEEYFFDDPYKQQKWTNKLLGDS" [] [] 1 [] {} 1 "EG10575-MONOMER" "Type IV methyl-directed restriction enzyme EcoKMcrBC subunit" ["McrC", "MrcC subunit of 5-methylcytosine restriction system", "5-methylcytosine-specific restriction enzyme subunit McrC"] "MEQPVIPVRNIYYMLTYAWGYLQEIKQANLEAIPGNNLLDILGYVLNKGVLQLSRRGLELDYNPNTEIIPGIKGRIEFAKTIRGFHLNHGKTVSTFDMLNEDTLANRIIKSTLAILIKHEKLNSTIRDEARSLYRKLPGISTLHLTPQHFSYLNGGKNTRYYKFVISVCKFIVNNSIPGQNKGHYRFYDFERNEKEMSLLYQKFLYEFCRRELTSANTTRSYLKWDASSISDQSLNLLPRMETDITIRSSEKILIVDAKYYKSIFSRRMGTEKFHSQNLYQLMNYLWSLKPENGENIGGLLIYPHVDTAVKHRYKINGFDIGLCTVNLGQEWPCIHQELLDIFDEYLK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10580-MONOMER" "peptidoglycan DD-endopeptidase/peptidoglycan LD-endopeptidase" ["MepA"] "MNKTAIALLALLASSASLAATPWQKITQPVPGSAQSIGSFSNGCIVGADTLPIQSEHYQVMRTDQRRYFGHPDLVMFIQRLSSQVSNLGMGTVLIGDMGMPAGGRFNGGHASHQTGLDVDIFLQLPKTRWTSAQLLRPQALDLVSRDGKHVVSTLWKPEIFSLIKLAAQDKDVTRIFVNPAIKQQLCLDAGTDRDWLRKVRPWFQHRAHMHVRLRCPADSLECEDQPLPPSGDGCGAELQSWFEPPKPGTTKPEKKTPPPLPPSCQALLDEHVI" [] ["CCO-PERI-BAC"] 0 [] {"ZN+2": 2} 1 "EG10595-MONOMER" "tRNA dimethylallyltransferase" ["TrpX", "MiaA", "tRNA(i6A37) synthase"] "MSDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAARIHPNDPQRLSRALEVFFISGKTLTELTQTSGDALPYQVHQFAIAPASRELLHQRIEQRFHQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMWSYLEGEISYDEMVYRGVCATRQLAKRQITWLRGWEGVHWLDSEKPEQARDEVLQVVGAIAG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10596-MONOMER" "Z-ring positioning protein MinC" ["MinB", "MinC"] "MSNTPIELKGSSFTLSVVHLHEAEPKVIHQALEDKIAQAPAFLKHAPVVLNVSALEDPVNWSAMHKAVSATGLRVIGVSGCKDAQLKAEIEKMGLPILTEGKEKAPRPAPTPQAPAQNTTPVTKTRLIDTPVRSGQRIYAPQCDLIVTSHVSAGAELIADGNIHVYGMMRGRALAGASGDRETQIFCTNLMAELVSIAGEYWLSDQIPAEFYGKAARLQLVENALTVQPLN" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"EG10597-MONOMER" "Z-ring positioning protein MinD" ["MinB", "MinD"] "MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYADTVERLLGEERPFRFIEEEKKGFLKRLFGG" ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 1 [] {} 1 -"EG10598-MONOMER" "Z-ring positioning protein MinE" ["MinB", "MinE"] "MALLDFFLSRKKNTANIAKERLQIIVAERRRSDAEPHYLPQLRKDILEVICKYVQIDPEMVTVQLEQKDGDISILELNVTLPEAEELK" ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 +"EG10597-MONOMER" "Z-ring positioning protein MinD" ["MinB", "MinD"] "MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYADTVERLLGEERPFRFIEEEKKGFLKRLFGG" ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 1 [] {} 1 +"EG10598-MONOMER" "Z-ring positioning protein MinE" ["MinB", "MinE"] "MALLDFFLSRKKNTANIAKERLQIIVAERRRSDAEPHYLPQLRKDILEVICKYVQIDPEMVTVQLEQKDGDISILELNVTLPEAEELK" ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 1 [] {} 0 "EG10599-MONOMER" "chaperonin GroEL" ["GroL", "MopA", "GroEL", "cpn60"] "MAAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAADLGAAGGMGGMGGMGGMM" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MG+2": 1} 1 "EG10600-MONOMER" "cochaperonin GroES" ["GroS", "GroES", "MopB", "cpn10"] "MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVEA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10603-MONOMER" "DNA-binding transcriptional regulator MprA" ["MprA", "EmrR"] "MDSSFTPIEQMLKFRASRHEDFPYQEILLTRLCMHMQSKLLENRNKMLKAQGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLREVLPPQHNCLHQLWSALSTTEKDQLEQITRKLLSRLDQMEQDGVVLEAMS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"EG10605-MONOMER" "peptidoglycan glycosyltransferase / peptidoglycan DD-transpeptidase MrcB" ["PonB", "PbpF", "PBP1B", "PBP1Bs", "MrcB", "PBP1Bα", "penicillin binding protein 1B", "penicillin binding protein 1Bα"] "MAGNDREPIGRKGKPTRPVKQKVSRRRYEDDDDYDDYDDYEDEEPMPRKGKGKGKGRKPRGKRGWLWLLLKLAIVFAVLIAIYGVYLDQKIRSRIDGKVWQLPAAVYGRMVNLEPDMTISKNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFDFPDSKEGQVRARLTFDGDHLATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPRSGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSERSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQQIIDQELYDMLSARPLGVQPRGGVISPQPAFMQLVRQELQAKLGDKVKDLSGVKIFTTFDSVAQDAAEKAAVEGIPALKKQRKLSDLETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPKIYRLNTWIADAPIALRQPNGQVWSPQNDDRRYSESGRVMLVDALTRSMNVPTVNLGMALGLPAVTETWIKLGVPKDQLHPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTITWVGRDNNQPTKLYGASGAMSIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGGMRILPVWTSDPQSLCQQSEMQQQPSGNPFDQSSQPQQQPQQQPAQQEQKDSDGVAGWIKDMFGSN" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] ["CCO-CW-BAC-NEG", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 +"EG10605-MONOMER" "peptidoglycan glycosyltransferase / peptidoglycan DD-transpeptidase MrcB" ["PonB", "PbpF", "PBP1B", "PBP1Bs", "MrcB", "PBP1Bα", "penicillin binding protein 1B", "penicillin binding protein 1Bα"] "MAGNDREPIGRKGKPTRPVKQKVSRRRYEDDDDYDDYDDYEDEEPMPRKGKGKGKGRKPRGKRGWLWLLLKLAIVFAVLIAIYGVYLDQKIRSRIDGKVWQLPAAVYGRMVNLEPDMTISKNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFDFPDSKEGQVRARLTFDGDHLATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPRSGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSERSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQQIIDQELYDMLSARPLGVQPRGGVISPQPAFMQLVRQELQAKLGDKVKDLSGVKIFTTFDSVAQDAAEKAAVEGIPALKKQRKLSDLETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPKIYRLNTWIADAPIALRQPNGQVWSPQNDDRRYSESGRVMLVDALTRSMNVPTVNLGMALGLPAVTETWIKLGVPKDQLHPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTITWVGRDNNQPTKLYGASGAMSIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGGMRILPVWTSDPQSLCQQSEMQQQPSGNPFDQSSQPQQQPQQQPAQQEQKDSDGVAGWIKDMFGSN" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] ["CCO-CW-BAC-NEG", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG10606-MONOMER" "peptidoglycan DD-transpeptidase MrdA" ["PbpA", "MrdA", "PBP2", "penicillin-binding protein 2"] "MKLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQIVRFTDYQTRSNENRIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTLDALRSVVDLTDDDIAAFRKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKGYKRRYYPYGSALTHVIGYVSKINDKDVERLNNDGKLANYAATHDIGKLGIERYYEDVLHGQTGYEEVEVNNRGRVIRQLKEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGGVLALVSTPSYDPNLFVDGISSKDYSALLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRNTTLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTRSLEESADTFFYQVAYDMGIDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALMILINDGIVKVPHLLMSTAEDGKQVPWVQPHEPPVGDIHSGYWELAKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAERLRDHKLMTAFAPYNNPQVAVAMILENGGAGPAVGTLMRQILDHIMLGDNNTDLPAENPAVAAAEDH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG10607-MONOMER" "peptidoglycan glycosyltransferase MrdB" ["RodA", "MrdB", "SEDS family protein MrdB"] "MTDNPNKKTFWDKVHLDPTMLLILLALLVYSALVIWSASGQDIGMMERKIGQIAMGLVIMVVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRWLDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTGIALVLIFMPTLLVAAQPDLGTSILVALSGLFVLFLSGLSWRLIGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPESDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVGILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG10608-MONOMER" "dynamic cytoskeletal protein MreB" ["RodY", "Mon", "EnvB", "MreB_1", "MreB"] "MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAKQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE" ["CCO-PM-BAC-NEG", "CCO-CYTOSKELETON"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG10609-MONOMER" "cell shape determining protein MreC" ["MreC"] "MKPIFSRGPSLQIRLILAVLVALGIIIADSRLGTFSQIRTYMDTAVSPFYFVSNAPRELLDGVSQTLASRDQLELENRALRQELLLKNSELLMLGQYKQENARLRELLGSPLRQDEQKMVTQVISTVNDPYSDQVVIDKGSVNGVYEGQPVISDKGVVGQVVAVAKLTSRVLLICDATHALPIQVLRNDIRVIAAGNGCTDDLQLEHLPANTDIRVGDVLVTSGLGGRFPEGYPVAVVSSVKLDTQRAYTVIQARPTAGLQRLRYLLLLWGADRNGANPMTPEEVHRVANERLMQMMPQVLPSPDAMGPKLPEPATGIAQPTPQQPATGNAATAPAAPTQPAANRSPQRATPPQSGAQPPARAPGGQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"EG10609-MONOMER" "cell shape determining protein MreC" ["MreC"] "MKPIFSRGPSLQIRLILAVLVALGIIIADSRLGTFSQIRTYMDTAVSPFYFVSNAPRELLDGVSQTLASRDQLELENRALRQELLLKNSELLMLGQYKQENARLRELLGSPLRQDEQKMVTQVISTVNDPYSDQVVIDKGSVNGVYEGQPVISDKGVVGQVVAVAKLTSRVLLICDATHALPIQVLRNDIRVIAAGNGCTDDLQLEHLPANTDIRVGDVLVTSGLGGRFPEGYPVAVVSSVKLDTQRAYTVIQARPTAGLQRLRYLLLLWGADRNGANPMTPEEVHRVANERLMQMMPQVLPSPDAMGPKLPEPATGIAQPTPQQPATGNAATAPAAPTQPAANRSPQRATPPQSGAQPPARAPGGQ" ["CCO-PM-BAC-NEG"] ["CCO-PERI-BAC", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG10610-MONOMER" "cell shape determining protein MreD" ["MreD"] "MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG10611-MONOMER" "P-loop NTPase family protein Mrp" ["Mrp"] "MNEQSQAKSPEALRAMVAGTLANFQHPTLKHNLTTLKALHHVAWMDDTLHVELVMPFVWHSAFEELKEQCSAELLRITGAKAIDWKLSHNIATLKRVKNQPGINGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQRPTSPDGTHMAPIMSHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSVHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDKGTPTVISRPESEFTAIYRQLADRVAAQLYWQGEVIPGEISFRAV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10612-MONOMER" "Type IV methyl-directed restriction enzyme EcoKMrr" ["Mrr", "methylated adenine and cytosine restriction protein"] "MTVPTYDKFIEPVLRYLATKPEGAAARDVHEAAADALGLDDSQRAKVITSGQLVYKNRAGWAHDRLKRAGLSQSLSRGKWCLTPAGFDWVASHPQPMTEQETNHLAFAFVNVKLKSRPDAVDLDPKADSPDHEELAKSSPDDRLDQALKELRDAVADEVLENLLQVSPSRFEVIVLDVLHRLGYGGHRDDLQRVGGTGDGGIDGVISLDKLGLEKVYVQAKRWQNTVGRPELQAFYGALAGQKAKRGVFITTSGFTSQARDFAQSVEGMVLVDGERLVHLMIENEVGVSSRLLKVPKLDMDYFE" ["CCO-BAC-NUCLEOID"] ["CCO-CYTOSOL", "CCO-BAC-NUCLEOID"] 0 [] {} 0 @@ -572,28 +572,28 @@ "EG10634-MONOMER" "UMP phosphatase" ["UmpH", "NagD"] "MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKAGFTITDVNPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSMPFRPSWIYPSVAEIDVI" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "EG10651-MONOMER" "endonuclease IV" ["Nfo"] "MKYIGAHVSAAGGLANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVTAVIENTAGQGSNLGFKFEHLAAIIDGVEDKSRVGVCIDTCHAFAAGYDLRTPAECEKTFADFARTVGFKYLRGMHLNDAKSTFGSRVDRHHSLGEGNIGHDAFRWIMQDDRFDGIPLILETINPDIWAEEIAWLKAQQTEKAVA" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 3} 0 "EG10656-MONOMER" "putative transcriptional regulator SfsB" ["SfsB", "Nlp"] "MESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG10657-MONOMER" "lipoprotein-28" ["NlpA"] "MKLTTHHLRTGAALLLAGILLAGCDQSSSDAKHIKVGVINGAEQDVAEVAKKVAKEKYGLDVELVGFSGSLLPNDATNHGELDANVFQHRPFLEQDNQAHGYKLVAVGNTFVFPMAGYSKKIKTVAQIKEGATVAIPNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPKVDVAIISTTYIQQTGLSPVHDSVFIEDKNSPYVNILVAREDNKNAENVKEFLQSYQSPEVAKAAETIFNGGAVPGW" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG10658-MONOMER" "outer membrane protein assembly factor BamC" ["DapX", "NlpB", "lipoprotein-34"] "MAYSVQKSRLAKVAGVSLVLLLAACSSDSRYKRQVSGDEAYLEAAPLAELHAPAGMILPVTSGDYAIPVTNGSGAVGKALDIRPPAQPLALVSGARTQFTGDTASLLVENGRGNTLWPQVVSVLQAKNYTITQRDDAGQTLTTDWVQWNRLDEDEQYRGRYQISVKPQGYQQAVTVKLLNLEQAGKPVADAASMQRYSTEMMNVISAGLDKSATDAANAAQNRASTTMDVQSAADDTGLPMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNMAVTYKPLSDSDWQELGASDPGLASGDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDALVAVFQAAFSK" ["CCO-MEMBRANE"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 -"EG10659-MONOMER" "DLP12 prophage; putative outer membrane porin NmpC" ["PhmA", "NmpC"] "MKKLTVAISAVAASVLMAMSAQAAEIYNKDSNKLDLYGKVNAKHYFSSNDADDGDTTYARLGFKGETQINDQLTGFGQWEYEFKGNRAESQGSSKDKTRLAFAGLKFGDYGSIDYGRNYGVAYDIGAWTDVLPEFGGDTWTQTDVFMTQRATGVATYRNNDFFGLVDGLNFAAQYQGKNDRSDFDNYTEGNGDGFGFSATYEYEGFGIGATYAKSDRTDTQVNAGKVLPEVFASGKNAEVWAAGLKYDANNIYLATTYSETQNMTVFADHFVANKAQNFEAVAQYQFDFGLRPSVAYLQSKGKDLGVWGDQDLVKYVDVGATYYFNKNMSTFVDYKINLLDKNDFTKALGVSTDDIVAVGLVYQF" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"EG10657-MONOMER" "lipoprotein-28" ["NlpA"] "MKLTTHHLRTGAALLLAGILLAGCDQSSSDAKHIKVGVINGAEQDVAEVAKKVAKEKYGLDVELVGFSGSLLPNDATNHGELDANVFQHRPFLEQDNQAHGYKLVAVGNTFVFPMAGYSKKIKTVAQIKEGATVAIPNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPKVDVAIISTTYIQQTGLSPVHDSVFIEDKNSPYVNILVAREDNKNAENVKEFLQSYQSPEVAKAAETIFNGGAVPGW" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG10658-MONOMER" "outer membrane protein assembly factor BamC" ["DapX", "NlpB", "lipoprotein-34"] "MAYSVQKSRLAKVAGVSLVLLLAACSSDSRYKRQVSGDEAYLEAAPLAELHAPAGMILPVTSGDYAIPVTNGSGAVGKALDIRPPAQPLALVSGARTQFTGDTASLLVENGRGNTLWPQVVSVLQAKNYTITQRDDAGQTLTTDWVQWNRLDEDEQYRGRYQISVKPQGYQQAVTVKLLNLEQAGKPVADAASMQRYSTEMMNVISAGLDKSATDAANAAQNRASTTMDVQSAADDTGLPMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNMAVTYKPLSDSDWQELGASDPGLASGDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDALVAVFQAAFSK" ["CCO-MEMBRANE"] ["CCO-OUTER-MEM"] 0 [] {} 1 +"EG10659-MONOMER" "DLP12 prophage; putative outer membrane porin NmpC" ["PhmA", "NmpC"] "MKKLTVAISAVAASVLMAMSAQAAEIYNKDSNKLDLYGKVNAKHYFSSNDADDGDTTYARLGFKGETQINDQLTGFGQWEYEFKGNRAESQGSSKDKTRLAFAGLKFGDYGSIDYGRNYGVAYDIGAWTDVLPEFGGDTWTQTDVFMTQRATGVATYRNNDFFGLVDGLNFAAQYQGKNDRSDFDNYTEGNGDGFGFSATYEYEGFGIGATYAKSDRTDTQVNAGKVLPEVFASGKNAEVWAAGLKYDANNIYLATTYSETQNMTVFADHFVANKAQNFEAVAQYQFDFGLRPSVAYLQSKGKDLGVWGDQDLVKYVDVGATYYFNKNMSTFVDYKINLLDKNDFTKALGVSTDDIVAVGLVYQF" [] ["CCO-OUTER-MEM"] 0 [] {} 0 "EG10662-MONOMER" "endonuclease III" ["Nth", "Endo III"] "MNKAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEKVDI" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 0 "EG10665-MONOMER" "transcription termination/antitermination protein NusA" ["NusA", "transcription termination/antitermination L factor"] "MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNICWFGDEA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10666-MONOMER" "transcription antitermination protein NusB" ["SsyB", "SsaD", "NusB"] "MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10667-MONOMER" "transcription termination/antitermination factor NusG" ["NusG"] "MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "EG10668-MONOMER" "methylated-DNA—[protein]-cysteine S-methyltransferase" ["Ogt", "O-6-alkylguanine-DNA/Cysteine-protein-methyltransferase", "MTase II", "O6AG ATase", "O6-alkylguanine-DNA-alkyltransferase"] "MLRLLEEKIATPLGPLWVICDEQFRLRAVEWEEYSERMVQLLDIHYRKEGYERISATNPGGLSDKLREYFAGNLSIIDTLPTATGGTPFQREVWKTLRTIPCGQVMHYGQLAEQLGRPGAARAVGAANGSNPISIVVPCHRVIGRNGTMTGYAGGVQRKEWLLRHEGYLLL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10669-MONOMER" "outer membrane protein A" ["Tut", "Con", "TolG", "OmpA", "outer membrane protein II*", "polypeptide II*", "protein II*", "outer membrane protein D", "outer membrane protein 3a", "outer membrane protein O-10", "outer membrane protein B", "outer membrane protein d"] "MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGIKDVVTQPQA" ["CCO-OUTER-MEM", "CCO-PERI-BAC", "CCO-MEMBRANE"] ["CCO-OUTER-MEM", "CCO-MEMBRANE"] 0 [] {} 0 -"EG10670-MONOMER" "outer membrane porin C" ["Par", "MeoA", "outer membrane protein A2", "outer membrane protein Ib", "outer membrane protein 4", "outer membrane protein 0-8", "OmpC"] "MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYFSDNKDVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNSAENENNSWTRVAFAGLKFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGKNGNPSGEGFTSGVTNNGRDALRQNGDGVGGSITYDYEGFGIGGAISSSKRTDAQNTAAYIGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {"MG+2": 1} 1 -"EG10671-MONOMER" "outer membrane porin F" ["NfxB", "TolF", "Cry", "CmlB", "outer membrane protein F", "colB", "outer membrane protein A1", "outer membrane protein 1a", "outer membrane protein 4", "outer membrane protein b", "outer membrane protein 0-9", "OmpF", "matrix porin"] "MMKRNILAVIVPALLVAGTANAAEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF" ["CCO-OUTER-MEM", "CCO-MEMBRANE"] ["CCO-OUTER-MEM", "CCO-MEMBRANE"] 0 [] {} 1 -"EG10673-MONOMER" "DLP12 prophage; omptin family outer membrane protease OmpT" ["OmpT", "omptin", "outer membrane protease VII (outer membrane protein 3b)", "protease 7"] "MRAKLLGIVLTTPIAISSFASTETLSFTPDNINADISLGTLSGKTKERVYLAEEGGRKVSQLDWKFNNAAIIKGAINWDLMPQISIGAAGWTTLGSRGGNMVDQDWMDSSNPGTWTDESRHPDTQLNYANEFDLNIKGWLLNEPNYRLGLMAGYQESRYSFTARGGSYIYSSEEGFRDDIGSFPNGERAIGYKQRFKMPYIGLTGSYRYEDFELGGTFKYSGWVESSDNDEHYDPGKRITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNRVTNKKGNTSLYDHNNNTSDYSKNGAGIENYNFITTAGLKYTF" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"EG10670-MONOMER" "outer membrane porin C" ["Par", "MeoA", "outer membrane protein A2", "outer membrane protein Ib", "outer membrane protein 4", "outer membrane protein 0-8", "OmpC"] "MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYFSDNKDVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNSAENENNSWTRVAFAGLKFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGKNGNPSGEGFTSGVTNNGRDALRQNGDGVGGSITYDYEGFGIGGAISSSKRTDAQNTAAYIGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {"MG+2": 1} 1 +"EG10671-MONOMER" "outer membrane porin F" ["NfxB", "TolF", "Cry", "CmlB", "outer membrane protein F", "colB", "outer membrane protein A1", "outer membrane protein 1a", "outer membrane protein 4", "outer membrane protein b", "outer membrane protein 0-9", "OmpF", "matrix porin"] "MMKRNILAVIVPALLVAGTANAAEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF" ["CCO-OUTER-MEM", "CCO-MEMBRANE"] ["CCO-OUTER-MEM"] 0 [] {} 1 +"EG10673-MONOMER" "DLP12 prophage; omptin family outer membrane protease OmpT" ["OmpT", "omptin", "outer membrane protease VII (outer membrane protein 3b)", "protease 7"] "MRAKLLGIVLTTPIAISSFASTETLSFTPDNINADISLGTLSGKTKERVYLAEEGGRKVSQLDWKFNNAAIIKGAINWDLMPQISIGAAGWTTLGSRGGNMVDQDWMDSSNPGTWTDESRHPDTQLNYANEFDLNIKGWLLNEPNYRLGLMAGYQESRYSFTARGGSYIYSSEEGFRDDIGSFPNGERAIGYKQRFKMPYIGLTGSYRYEDFELGGTFKYSGWVESSDNDEHYDPGKRITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNRVTNKKGNTSLYDHNNNTSDYSKNGAGIENYNFITTAGLKYTF" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 0 "EG10679-MONOMER" "osmotically-inducible lipoprotein OsmB" ["OsmB"] "MFVTSKKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALGGAVLTDGSTLGTLGGAAVGGVIGHQVGK" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 0 "EG10680-MONOMER" "osmotically inducible peroxiredoxin OsmC" ["OsmC", "osmotically inducible protein"] "MTIHKKGQAHWEGDIKRGKGTVSTESGVLNQQPYGFNTRFEGEKGTNPEELIGAAHAACFSMALSLMLGEAGFTPTSIDTTADVSLDKVDAGFAITKIALKSEVAVPGIDASTFDGIIQKAKAGCPVSQVLKAEITLDYQLKS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "EG10684-MONOMER" "peptidoglycan-associated outer membrane lipoprotein Pal" ["ExcC", "protein 21K", "Pal - outer membrane lipoprotein of the Tol-Pal system"] "MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGMLGAGTGMDANGGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVY" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 -"EG10686-MONOMER" "DNA topoisomerase IV subunit A" ["ParC", "DNA topoisomerase 4 subunit A"] "MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSEE" ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 +"EG10686-MONOMER" "DNA topoisomerase IV subunit A" ["ParC", "DNA topoisomerase 4 subunit A"] "MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSEE" ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 "EG10687-MONOMER" "DNA topoisomerase IV subunit B" ["NfxD", "ParE"] "MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIEV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 2} 1 "EG10689-MONOMER" "protein-L-isoaspartate O-methyltransferase" ["Pcm", "L-isoaspartate protein carboxylmethyltransferase type II"] "MVSRRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEEHQYLKRVRRRGGEFIIDTVEAVRFVPLVKGELA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 -"EG10690-MONOMER" "poly(A) polymerase I" ["PcnB", "PAP I"] "MFTRVANFCRKVLSREESEAEQAVARPQVTVIPREQHAISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDLLALRAEVERNAELQRLVKWWGEFQVSAPPDQKGMLNELDEEPSPRRRTRRPRKRAPRREGTA" ["CCO-CYTOSOL"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 +"EG10690-MONOMER" "poly(A) polymerase I" ["PcnB", "PAP I"] "MFTRVANFCRKVLSREESEAEQAVARPQVTVIPREQHAISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDLLALRAEVERNAELQRLVKWWGEFQVSAPPDQKGMLNELDEEPSPRRRTRRPRKRAPRREGTA" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "EG10694-MONOMER" "aminopeptidase A/I" ["PepA", "XerB", "CarP"] "MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE" [] ["CCO-CYTOSOL"] 0 [] {"MN+2": 2} 1 "EG10695-MONOMER" "peptidase D" ["PepD", "PepH"] "MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQGNWLQADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDVLKSLVNTYQEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGHYWTLLTELLKEIPAK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"ZN+2": 2} 1 -"EG10696-MONOMER" "aminopeptidase N" ["PepN", "α-aminoacylpeptide hydrolase"] "MTQQPQAKYRHDYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVRHGASDAPLRLNGEDLKLVSVHINDEPWTAWKEEEGALVISNLPERFTLKIINEISPAANTALEGLYQSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRGLQFAEDASPMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHFRRWYSQSGTPIVTVKDDYNPETEQYTLTISQRTPATPDQAEKQPLHIPFAIELYDNEGKVIPLQKGGHPVNSVLNVTQAEQTFVFDNVYFQPVPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWDAAQSLLATYIKLNVARHQQGQPLSLPVHVADAFRAVLLDEKIDPALAAEILTLPSVNEMAELFDIIDPIAIAEVREALTRTLATELADELLAIYNANYQSEYRVEHEDIAKRTLRNACLRFLAFGETHLADVLVSKQFHEANNMTDALAALSAAVAAQLPCRDALMQEYDDKWHQNGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFHAEDGSGYLFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLENLSGDLYEKITKALA" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 1 [] {"ZN+2": 1} 0 +"EG10696-MONOMER" "aminopeptidase N" ["PepN", "α-aminoacylpeptide hydrolase"] "MTQQPQAKYRHDYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVRHGASDAPLRLNGEDLKLVSVHINDEPWTAWKEEEGALVISNLPERFTLKIINEISPAANTALEGLYQSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRGLQFAEDASPMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHFRRWYSQSGTPIVTVKDDYNPETEQYTLTISQRTPATPDQAEKQPLHIPFAIELYDNEGKVIPLQKGGHPVNSVLNVTQAEQTFVFDNVYFQPVPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWDAAQSLLATYIKLNVARHQQGQPLSLPVHVADAFRAVLLDEKIDPALAAEILTLPSVNEMAELFDIIDPIAIAEVREALTRTLATELADELLAIYNANYQSEYRVEHEDIAKRTLRNACLRFLAFGETHLADVLVSKQFHEANNMTDALAALSAAVAAQLPCRDALMQEYDDKWHQNGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFHAEDGSGYLFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLENLSGDLYEKITKALA" [] ["CCO-PM-BAC-NEG"] 1 [] {"ZN+2": 1} 0 "EG10697-MONOMER" "Xaa-Pro aminopeptidase" ["PepP", "proline aminopeptidase P II"] "MSEISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEIEALMVAARKQ" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MN+2": 2} 1 "EG10698-MONOMER" "Xaa-Pro dipeptidase" ["PepQ"] "MESLASLYKNHIATLQERTRDALARFKLDALLIHSGELFNVFLDDHPYPFKVNPQFKAWVPVTQVPNCWLLVDGVNKPKLWFYLPVDYWHNVEPLPTSFWTEDVEVIALPKADGIGSLLPAARGNIGYIGPVPERALQLGIEASNINPKGVIDYLHYYRSFKTEYELACMREAQKMAVNGHRAAEEAFRSGMSEFDINIAYLTATGHRDTDVPYSNIVALNEHAAVLHYTKLDHQAPEEMRSFLLDAGAEYNGYAADLTRTWSAKSDNDYAQLVKDVNDEQLALIATMKAGVSYVDYHIQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMPHGIGHPLGLQVHDVAGFMQDDSGTHLAAPAKYPYLRCTRILQPGMVLTIEPGIYFIESLLAPWREGQFSKHFNWQKIEALKPFGGIRIEDNVVIHENNVENMTRDLKLA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MN+2": 2} 1 "EG10711-MONOMER" "zinc ribbon domain-containing protein YjdM" ["YjdM", "PhnA"] "MSLPHCPKCNSEYTYEDNGMYICPECAYEWNDAEPAQESDELIVKDANGNLLADGDSVTIIKDLKVKGSSSMLKIGTKVKNIRLVEGDHNIDCKIDGFGPMKLKSEFVKKN" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -615,27 +615,27 @@ "EG10743-MONOMER" "polynucleotide phosphorylase" ["Bfl", "Pnp"] "MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQGE" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "EG10746-MONOMER" "DNA polymerase I" ["ResA", "PolA", "Pol I", "DNA polymerase I, 5' --> 3' polymerase, 5' --> 3' and 3' --> 5' exonuclease"] "MVQIPQNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNKEVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAKGAKPAAKPQETSVADEAPEVTATVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDVPLLVEVGSGENWDQAH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10747-MONOMER" "DNA polymerase II" ["DinA", "PolB"] "MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF" [] ["CCO-CYTOSOL"] 1 [] {} 0 -"EG10748-MONOMER" "peptidoglycan glycosyltransferase / peptidoglycan DD-transpeptidase MrcA" ["PonA", "MrcA", "PBP1a", "penicillin binding protein 1a"] "MKFVKYFLILAVCCILLGAGSIYGLYRYIEPQLPDVATLKDVRLQIPMQIYSADGELIAQYGEKRRIPVTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIFRAASVALFSGHASQGASTITQQLARNFFLSPERTLMRKIKEVFLAIRIEQLLTKDEILELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTLNEMAVIAGLPKAPSTFNPLYSMDRAVARRNVVLSRMLDEGYITQQQFDQTRTEAINANYHAPEIAFSAPYLSEMVRQEMYNRYGESAYEDGYRIYTTITRKVQQAAQQAVRNNVLDYDMRHGYRGPANVLWKVGESAWDNNKITDTLKALPTYGPLLPAAVTSANPQQATAMLADGSTVALSMEGVRWARPYRSDTQQGPTPRKVTDVLQTGQQIWVRQVGDAWWLAQVPEVNSALVSINPQNGAVMALVGGFDFNQSKFNRATQALRQVGSNIKPFLYTAAMDKGLTLASMLNDVPISRWDASAGSDWQPKNSPPQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVHTESLALGSASFTPMQVARGYAVMANGGFLVDPWFISKIENDQGGVIFEAKPKVACPECDIPVIYGDTQKSNVLENNDVEDVAISREQQNVSVPMPQLEQANQALVAKTGAQEYAPHVINTPLAFLIKSALNTNIFGEPGWQGTGWRAGRDLQRRDIGGKTGTTNSSKDAWFSGYGPGVVTSVWIGFDDHRRNLGHTTASGAIKDQISGYEGGAKSAQPAWDAYMKAVLEGVPEQPLTPPPGIVTVNIDRSTGQLANGGNSREEYFIEGTQPTQQAVHEVGTTIIDNGEAQELF" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"EG10748-MONOMER" "peptidoglycan glycosyltransferase / peptidoglycan DD-transpeptidase MrcA" ["PonA", "MrcA", "PBP1a", "penicillin binding protein 1a"] "MKFVKYFLILAVCCILLGAGSIYGLYRYIEPQLPDVATLKDVRLQIPMQIYSADGELIAQYGEKRRIPVTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIFRAASVALFSGHASQGASTITQQLARNFFLSPERTLMRKIKEVFLAIRIEQLLTKDEILELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTLNEMAVIAGLPKAPSTFNPLYSMDRAVARRNVVLSRMLDEGYITQQQFDQTRTEAINANYHAPEIAFSAPYLSEMVRQEMYNRYGESAYEDGYRIYTTITRKVQQAAQQAVRNNVLDYDMRHGYRGPANVLWKVGESAWDNNKITDTLKALPTYGPLLPAAVTSANPQQATAMLADGSTVALSMEGVRWARPYRSDTQQGPTPRKVTDVLQTGQQIWVRQVGDAWWLAQVPEVNSALVSINPQNGAVMALVGGFDFNQSKFNRATQALRQVGSNIKPFLYTAAMDKGLTLASMLNDVPISRWDASAGSDWQPKNSPPQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVHTESLALGSASFTPMQVARGYAVMANGGFLVDPWFISKIENDQGGVIFEAKPKVACPECDIPVIYGDTQKSNVLENNDVEDVAISREQQNVSVPMPQLEQANQALVAKTGAQEYAPHVINTPLAFLIKSALNTNIFGEPGWQGTGWRAGRDLQRRDIGGKTGTTNSSKDAWFSGYGPGVVTSVWIGFDDHRRNLGHTTASGAIKDQISGYEGGAKSAQPAWDAYMKAVLEGVPEQPLTPPPGIVTVNIDRSTGQLANGGNSREEYFIEGTQPTQQAVHEVGTTIIDNGEAQELF" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "EG10757-MONOMER" "peptidyl-prolyl cis-trans isomerase A" ["Rot", "RotA", "PpiA", "rotamase A"] "MFKSTLAAMAAVFALSALSPAAMAAKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 "EG10758-MONOMER" "peptidyl-prolyl cis-trans isomerase B" ["PpiB", "rotamase B"] "MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG10760-MONOMER" "tail-specific protease" ["Tsp", "Prc", "c-terminal processing peptidase", "protease Re"] "MNMFFRLTALAGLLAIAGQTFAVEDITRADQIPVLKEETQHATVSERVTSRFTRSHYRQFDLDQAFSAKIFDRYLNLLDYSHNVLLASDVEQFAKKKTELGDELRSGKLDVFYDLYNLAQKRRFERYQYALSVLEKPMDFTGNDTYNLDRSKAPWPKNEAELNALWDSKVKFDELSLKLTGKTDKEIRETLTRRYKFAIRRLAQTNSEDVFSLAMTAFAREIDPHTNYLSPRNTEQFNTEMSLSLEGIGAVLQMDDDYTVINSMVAGGPAAKSKAISVGDKIVGVGQTGKPMVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRTVTLTRERIRLEDRAVKMSVKTVGKEKVGVLDIPGFYVGLTDDVKVQLQKLEKQNVSSVIIDLRSNGGGALTEAVSLSGLFIPAGPIVQVRDNNGKVREDSDTDGQVFYKGPLVVLVDRFSASASEIFAAAMQDYGRALVVGEPTFGKGTVQQYRSLNRIYDQMLRPEWPALGSVQYTIQKFYRVNGGSTQRKGVTPDIIMPTGNEETETGEKFEDNALPWDSIDAATYVKSGDLTAFEPELLKEHNARIAKDPEFQNIMKDIARFNAMKDKRNIVSLNYAVREKENNEDDATRLARLNERFKREGKPELKKLDDLPKDYQEPDPYLDETVNIALDLAKLEKARPAEQPAPVK" ["CCO-PERI-BAC"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 0 +"EG10760-MONOMER" "tail-specific protease" ["Tsp", "Prc", "c-terminal processing peptidase", "protease Re"] "MNMFFRLTALAGLLAIAGQTFAVEDITRADQIPVLKEETQHATVSERVTSRFTRSHYRQFDLDQAFSAKIFDRYLNLLDYSHNVLLASDVEQFAKKKTELGDELRSGKLDVFYDLYNLAQKRRFERYQYALSVLEKPMDFTGNDTYNLDRSKAPWPKNEAELNALWDSKVKFDELSLKLTGKTDKEIRETLTRRYKFAIRRLAQTNSEDVFSLAMTAFAREIDPHTNYLSPRNTEQFNTEMSLSLEGIGAVLQMDDDYTVINSMVAGGPAAKSKAISVGDKIVGVGQTGKPMVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRTVTLTRERIRLEDRAVKMSVKTVGKEKVGVLDIPGFYVGLTDDVKVQLQKLEKQNVSSVIIDLRSNGGGALTEAVSLSGLFIPAGPIVQVRDNNGKVREDSDTDGQVFYKGPLVVLVDRFSASASEIFAAAMQDYGRALVVGEPTFGKGTVQQYRSLNRIYDQMLRPEWPALGSVQYTIQKFYRVNGGSTQRKGVTPDIIMPTGNEETETGEKFEDNALPWDSIDAATYVKSGDLTAFEPELLKEHNARIAKDPEFQNIMKDIARFNAMKDKRNIVSLNYAVREKENNEDDATRLARLNERFKREGKPELKKLDDLPKDYQEPDPYLDETVNIALDLAKLEKARPAEQPAPVK" ["CCO-PERI-BAC"] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 "EG10761-MONOMER" "peptide chain release factor RF1" ["Uar", "SueB", "PrfA"] "MKPSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLDDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSEQE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10762-MONOMER" "peptide chain release factor RF2" ["SupK", "PrfB", "RF2"] "MFEINPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRTSGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKAGL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10763-MONOMER" "primosomal protein N'" ["SrgA", "replication factor Y", "PriA", "PriA helicase"] "MPVAHVALPVPLPRTFDYLLPEGMTVKAGCRVRVPFGKQQERIGIVVSVSDASELPLNELKAVVEVLDSEPVFTHSVWRLLLWAADYYHHPIGDVLFHALPILLRQGRPAANAPMWYWFATEQGQAVDLNSLKRSPKQQQALAALRQGKIWRDQVATLEFNDAALQALRKKGLCDLASETPEFSDWRTNYAVSGERLRLNTEQATAVGAIHSAADTFSAWLLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQTIARFRERFNAPVEVLHSGLNDSERLSAWLKAKNGEAAIVIGTRSALFTPFKNLGVIVIDEEHDSSYKQQEGWRYHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARPAIQHVLDLKGQKVQAGLAPALITRMRQHLQADNQVILFLNRRGFAPALLCHDCGWIAECPRCDHYYTLHQAQHHLRCHHCDSQRPVPRQCPSCGSTHLVPVGLGTEQLEQTLAPLFPGVPISRIDRDTTSRKGALEQQLAEVHRGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSADFRSAERFAQLYTQVAGRAGRAGKQGEVVLQTHHPEHPLLQTLLYKGYDAFAEQALAERRMMQLPPWTSHVIVRAEDHNNQHAPLFLQQLRNLILSSPLADEKLWVLGPVPALAPKRGGRWRWQILLQHPSRVRLQHIINGTLALINTIPDSRKVKWVLDVDPIEG" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10764-MONOMER" "primosomal replication protein N" ["PriB"] "MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDSGD" [] ["CCO-CYTOSOL"] 1 [] {} 1 "EG10765-MONOMER" "primosomal replication protein N''" ["PriC"] "MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR" [] ["CCO-CYTOSOL"] 1 [] {} 1 -"EG10776-MONOMER" "phage shock protein A" ["Cog", "PspA", "regulatory protein for the phage shock operon, protects membrane integrity"] "MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHSFGKQKSLDDQFAELKADDAISEQLAQLKAKMKQDNQ" ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 1 [] {} 1 -"EG10777-MONOMER" "phage shock protein B" ["PspB", "phage shock protein B / antitoxin of a putative PspC-PspB toxin-antitoxin pair"] "MSALFLAIPLTIFVLFVLPIWLWLHYSNRSGRSELSQSEQQRLAQLADEAKRMRERIQALESILDAEHPNWRDR" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 -"EG10778-MONOMER" "phage shock protein C" ["PspC"] "MAGINLNKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLSIFFGLALFTLVAYIILSFALDPMPDNMAFGEQLPSSSELLDEVDRELAASETRLREMERYVTSDTFTLRSRFRQL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"EG10779-MONOMER" "phage shock protein D" ["PspD"] "MNTRWQQAGQKVKPGFKLAGKLVLLTALRYGPAGVAGWAIKSVARRPLKMLLAVALEPLLSRAANKLAQRYKR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG10776-MONOMER" "phage shock protein A" ["Cog", "PspA", "regulatory protein for the phage shock operon, protects membrane integrity"] "MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHSFGKQKSLDDQFAELKADDAISEQLAQLKAKMKQDNQ" ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 1 [] {} 1 +"EG10777-MONOMER" "phage shock protein B" ["PspB", "phage shock protein B / antitoxin of a putative PspC-PspB toxin-antitoxin pair"] "MSALFLAIPLTIFVLFVLPIWLWLHYSNRSGRSELSQSEQQRLAQLADEAKRMRERIQALESILDAEHPNWRDR" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"EG10778-MONOMER" "phage shock protein C" ["PspC"] "MAGINLNKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLSIFFGLALFTLVAYIILSFALDPMPDNMAFGEQLPSSSELLDEVDRELAASETRLREMERYVTSDTFTLRSRFRQL" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"EG10779-MONOMER" "phage shock protein D" ["PspD"] "MNTRWQQAGQKVKPGFKLAGKLVLLTALRYGPAGVAGWAIKSVARRPLKMLLAVALEPLLSRAANKLAQRYKR" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG10780-MONOMER" "thiosulfate sulfurtransferase PspE" ["PspE"] "MFKKGLLALALVFSLPVFAAEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLKDIAMPKVKG" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 "EG10785-MONOMER" "peptidyl-tRNA hydrolase" ["Rap", "Pth"] "MTIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKATNRLHAFKAQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG10786-MONOMER" "protease 3" ["PtrA", "Ptr", "Pitrilysin", "Protease pi", "protease III"] "MPRSTWFKALLLLVALWAPLSQAETGWQPIQETIRKSDKDNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMMTPQNARIWYISPKEPHNKTAYFVDAPYQVDKISAQTFADWQKKAADIALSLPELNPYIPDDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNANNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVEPQGMAILSQISGSQNGKAEYVHPEGWKVWENVSALQQTMPLMSEKNE" ["CCO-CYTOSOL", "CCO-PERI-BAC"] ["CCO-CYTOSOL", "CCO-PERI-BAC"] 0 [] {"ZN+2": 1} 0 +"EG10786-MONOMER" "protease 3" ["PtrA", "Ptr", "Pitrilysin", "Protease pi", "protease III"] "MPRSTWFKALLLLVALWAPLSQAETGWQPIQETIRKSDKDNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMMTPQNARIWYISPKEPHNKTAYFVDAPYQVDKISAQTFADWQKKAADIALSLPELNPYIPDDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNANNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVEPQGMAILSQISGSQNGKAEYVHPEGWKVWENVSALQQTMPLMSEKNE" ["CCO-CYTOSOL", "CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {"ZN+2": 1} 0 "EG10812-MONOMER" null ["TsaA", "QueA"] "MRVTDFSFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFTDLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPKPGAELLLGDDESINATMTARHGALFEVEFNDERSVLDILNSIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPTAGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVDTIEDHIMHSEYAEVPQDVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPFFDDTQIFIYPGFQYKVVDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRFFSYGDAMFITYNPQAINERVGE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10813-MONOMER" "Rac prophage; protein RacC" ["RacC", "SbcA"] "MITNYEATVVTTDDIVHEVNLEGKRIGYVIKTENKETPFTVVDIDGPSGNVKTLDEGVKKMCLVHIGKNLPAEKKAEFLATLIAMKLKGEI" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10817-MONOMER" "D-ribose pyranase" ["RbsP", "RbsD"] "MKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMALTQGVPSFMQVLGVVTNEMQVEAAIIAEEIKHHNPQLHETLLTHLEQLQKHQGNTIEIRYTTHEQFKQQTAESQAVIRSGECSPYANIILCAGVTF" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10823-MONOMER" "DNA recombination/repair protein RecA" ["Tif", "UmuB", "Zab", "Srf", "RnmB", "RecH", "LexB", "RecA"] "MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF" [] ["CCO-CYTOSOL"] 1 [] {} 0 -"EG10824-MONOMER" "exodeoxyribonuclease V subunit RecB" ["Ior", "RorA", "RecB"] "MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA" [] ["CCO-CYTOSOL"] 1 [] {"MG+2": 1} 1 +"EG10824-MONOMER" "exodeoxyribonuclease V subunit RecB" ["Ior", "RorA", "RecB"] "MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA" [] ["CCO-CYTOSOL"] 1 [] {} 1 "EG10825-MONOMER" "exodeoxyribonuclease V subunit RecC" ["RecC"] "MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10826-MONOMER" "exodeoxyribonuclease V subunit RecD" ["HopE", "RecD"] "MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSSRE" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10827-MONOMER" "Rac prophage; exonuclease VIII, ds DNA exonuclease, 5' --> 3' specific" ["RmuB", "Rac", "SbcA", "RecE"] "MSTKPLFLLRKAKKSSGEPDVVLWASNDFESTCATLDYLIVKSGKKLSSYFKAVATNFPVVNDLPAEGEIDFTWSERYQLSKDSMTWELKPGAAPDNAHYQGNTNVNGEDMTEIEENMLLPISGQELPIRWLAQHGSEKPVTHVSRDGLQALHIARAEELPAVTALAVSHKTSLLDPLEIRELHKLVRDTDKVFPNPGNSNLGLITAFFEAYLNADYTDRGLLTKEWMKGNRVSHITRTASGANAGGGNLTDRGEGFVHDLTSLARDVATGVLARSMDLDIYNLHPAHAKRIEEIIAENKPPFSVFRDKFITMPGGLDYSRAIVVASVKEAPIGIEVIPAHVTEYLNKVLTETDHANPDPEIVDIACGRSSAPMPQRVTEEGKQDDEEKPQPSGTTAVEQGEAETMEPDATEHHQDTQPLDAQSQVNSVDAKYQELRAELHEARKNIPSKNPVDDDKLLAASRGEFVDGISDPNDPKWVKGIQTRDCVYQNQPETEKTSPDMNQPEPVVQQEPEIACNACGQTGGDNCPDCGAVMGDATYQETFDEESQVEAKENDPEEMEGAEHPHNENAGSDPHRDCSDETGEVADPVIVEDIEPGIYYGISNENYHAGPGISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLEPEEFSNRFIVAPEFNRRTNAGKEEEKAFLMECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAESSIYWEDPETGILCRCRPDKIIPEFHWIMDVKTTADIQRFKTAYYDYRYHVQDAFYSDGYEAQFGVQPTFVFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYHRNLRTLSDCLNTDEWPAIKTLSLPRWAKEYAND" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -661,12 +661,12 @@ "EG10851-MONOMER" null ["Tcp", "RimJ"] "MFGYRSNVPKVRLTTDRLVVRLVHDRDAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFGLFDPDEKEIIGVANFSNVVRGSFHACYLGYSIGQKWQGKGLMFEALTAAIRYMQRTQHIHRIMANYMPHNKRSGDLLARLGFEKEGYAKDYLLIDGQWRDHVLTALTTPDWTPGR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10852-MONOMER" "ribosomal protein S6 modification protein" ["Nek", "RimK"] "MKIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSNLHRGGAASVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNASPGLEGIEKTTGIDIAGKMIRWIERHATTEYCLKTGG" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 2, "MN+2": 2} 1 "EG10853-MONOMER" "ribosomal-protein-L12-serine N-acetyltransferase" ["RimL"] "MTETIKVSESLELHAVAENHVKPLYQLICKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVISFNRIEPLNKTAEIGYWLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPQSNQVALRNGFILEGCLKQAEFLNDAYDDVNLYARIIDSQ" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG10854-MONOMER" "rare lipoprotein RlpA" ["RlpA"] "MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEISGADPRFEPLNATANQDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEAFDPTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSNNTKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPAMVTPQAVSQSASGNFMVQVGAVSDQARAQQYQQQLGQKFGVPGRVTQNGAVWRIQLGPFASKAEASTLQQRLQTEAQLQSFITTAQ" ["CCO-OUTER-MEM"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"EG10854-MONOMER" "rare lipoprotein RlpA" ["RlpA"] "MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEISGADPRFEPLNATANQDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEAFDPTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSNNTKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPAMVTPQAVSQSASGNFMVQVGAVSDQARAQQYQQQLGQKFGVPGRVTQNGAVWRIQLGPFASKAEASTLQQRLQTEAQLQSFITTAQ" ["CCO-OUTER-MEM"] ["CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] 0 [] {} 0 "EG10855-MONOMER" "lipopolysaccharide assembly protein LptE" ["LptE", "RlpB"] "MRYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSIAKDTASVFRNGQTAEYQMIMTVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLPSIRAADIRSDEEQTSTTTDTPATPARVSTTLGN" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-OUTER-MEM"] 0 [] {} 1 -"EG10856-MONOMER" "RNase I" ["RnsA", "Rna", "ribonuclease I"] "MKAFWRNAALLAVSLLPFSSANALALQAKQYGDFDRYVLALSWQTGFCQSQHDRNRNERDECRLQTETTNKADFLTVHGLWPGLPKSVAARGVDERRWMRFGCATRPIPNLPEARASRMCSSPETGLSLETAAKLSEVMPGAGGRSCLERYEYAKHGACFGFDPDAYFGTMVRLNQEIKESEAGKFLADNYGKTVSRRDFDAAFAKSWGKENVKAVKLTCQGNPAYLTEIQISIKADAINAPLSANSFLPQPHPGNCGKTFVIDKAGY" ["CCO-PERI-BAC"] ["CCO-EXTRACELLULAR", "CCO-PERI-BAC", "CCO-CYTOSOL"] 0 [] {} 0 +"EG10856-MONOMER" "RNase I" ["RnsA", "Rna", "ribonuclease I"] "MKAFWRNAALLAVSLLPFSSANALALQAKQYGDFDRYVLALSWQTGFCQSQHDRNRNERDECRLQTETTNKADFLTVHGLWPGLPKSVAARGVDERRWMRFGCATRPIPNLPEARASRMCSSPETGLSLETAAKLSEVMPGAGGRSCLERYEYAKHGACFGFDPDAYFGTMVRLNQEIKESEAGKFLADNYGKTVSRRDFDAAFAKSWGKENVKAVKLTCQGNPAYLTEIQISIKADAINAPLSANSFLPQPHPGNCGKTFVIDKAGY" ["CCO-PERI-BAC"] ["CCO-PERI-BAC", "CCO-CYTOSOL"] 0 [] {} 0 "EG10857-MONOMER" "RNase III" ["Rnc"] "MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKKLELE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "EG10858-MONOMER" "RNase D" ["Rnd", "ribonuclease D"] "MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALHNLLQEYPQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG10859-MONOMER" "ribonuclease E" ["SmbB", "Ams", "Rne"] "MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1, "ZN+2": 1} 1 +"EG10859-MONOMER" "ribonuclease E" ["SmbB", "Ams", "Rne"] "MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1, "ZN+2": 1} 1 "EG10860-MONOMER" "ribonuclease HI" ["Sin", "Cer", "Rnh", "SdrA", "HerA", "DasF", "RnhA", "type I RNase H", "RNase H", "RNase HI", "RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replication"] "MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 2} 0 "EG10861-MONOMER" "RNase HII" ["RnhB", "type 2 RNase H", "ribonuclease HII", "RNase H2"] "MIEFVYPHTQLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWSLGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPMPAMAVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPVKRALGLAS" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "EG10862-MONOMER" "RNase P protein component" ["RnpA", "ribonuclease P protein component", "C5 protein", "RNase P protein subunit"] "MVKLAFPRELRLLTPSQFTFVFQQPQRAGTPQITILGRLNSLGHPRIGLTVAKKNVRRAHERNRIKRLTRESFRLRQHELPAMDFVVVAKKGVADLDNRALSEALEKLWRRHCRLARGS" [] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -726,7 +726,7 @@ "EG10921-MONOMER" "ferritin iron storage protein" ["RsgA", "FtnA", "Ftn"] "MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFAEYSSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDKELSTLDTQN" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"FE+2": 3} 1 "EG10923-MONOMER" "Holliday junction branch migration complex subunit RuvA" ["RuvA", "branch migration of Holliday structures, repair"] "MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10924-MONOMER" "Holliday junction branch migration complex subunit RuvB" ["RuvB", "branch migration of Holliday structures, repair helicase"] "MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPEMP" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"EG10925-MONOMER" "crossover junction endodeoxyribonuclease RuvC" ["RuvC", "Holliday junction nuclease, resolution of structures, repair"] "MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRLR" [] ["CCO-CYTOSOL"] 1 [] {"MG+2": 1} 1 +"EG10925-MONOMER" "crossover junction endodeoxyribonuclease RuvC" ["RuvC", "Holliday junction nuclease, resolution of structures, repair"] "MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRLR" [] ["CCO-CYTOSOL"] 1 [] {} 1 "EG10926-MONOMER" "exodeoxyribonuclease I" ["RmuA", "XonA", "CpeA", "SbcB", "ExoI", "exonuclease I, 3' --> 5' specific, deoxyribophosphodiesterase"] "MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 2} 0 "EG10927-MONOMER" "ATP-dependent structure-specific DNA nuclease - SbcC subunit" ["SbcC"] "MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVTLLTPEQVQSLTASLQVLTDEEKQLITAQQQEQQSLNWLTRQDELQQEASRRQQALQQALAEEEKAQPQLAALSLAQPARNLRPHWERIAEHSAALAHIRQQIEEVNTRLQSTMALRASIRHHAAKQSAELQQQQQSLNTWLQEHDRFRQWNNEPAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNALAAITLTLTADEVATALAQHAEQRPLRQHLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGATLRGQLDAITKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPLDDIQPWLDAQDEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQLLLTTLTGYALTLPQEDEEESWLATRQQEAQSWQQRQNELTALQNRIQQLTPILETLPQSDELPHCEETVVLENWRQVHEQCLALHSQQQTLQQQDVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQTLVTQTAETLAQHQQHRPDDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQLTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKINGLGYSKLESTFAVK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG10941-MONOMER" "selenocysteine synthase" ["FdhA", "SelA"] "MTTETRSLYSQLPAIDRLLRDSSFLSLRDTYGHTRVVELLRQMLDEAREVIRGSQTLPAWCENWAQEVDARLTKEAQSALRPVINLTGTVLHTNLGRALQAEAAVEAVAQAMRSPVTLEYDLDDAGRGHRDRALAQLLCRITGAEDACIVNNNAAAVLLMLAATASGKEVVVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNRTHANDYRQAVNENTALLMKVHTSNYSIQGFTKAIDEAELVALGKELDVPVVTDLGSGSLVDLSQYGLPKEPMPQELIAAGVSLVSFSGDKLLGGPQAGIIVGKKEMIARLQSHPLKRALRADKMTLAALEATLRLYLHPEALSEKLPTLRLLTRSAEVIQIQAQRLQAPLAAHYGAEFAVQVMPCLSQIGSGSLPVDRLPSAALTFTPHDGRGSHLESLAARWRELPVPVIGRIYDGRLWLDLRCLEDEQRFLEMLLK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -734,12 +734,12 @@ "EG10943-MONOMER" "selenide, water dikinase" ["FdhB", "SelD"] "MSENSIRLTQYSHGAGCGCKISPKVLETILHSEQAKFVDPNLLVGNETRDDAAVYDLGNGTSVISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGGKPIMAIAILGWPINKLSPEIAREVTEGGRYACRQAGIALAGGHSIDAPEPIFGLAVTGIVPTERVKKNSTAQAGCKLFLTKPLGIGVLTTAEKKSLLKPEHQGLATEVMCRMNIAGASFANIEGVKAMTDVTGFGLLGHLSEMCQGAGVQARVDYEAIPKLPGVEEYIKLGAVPGGTERNFASYGHLMGEMPREVRDLLCDPQTSGGLLLAVMPEAENEVKATAAEFGIELTAIGELVPARGGRAMVEIR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "EG10949-MONOMER" "sugar fermentation stimulation protein A" ["Sfs", "SfsA", "putative DNA-binding transcriptional regulator of maltose metabolism"] "MEFSPPLQRATLIQRYKRFLADVITPDGRELTLHCPNTGAMTGCATPGDTVWYSTSDNTKRKYPHTWELTQSQSGAFICVNTLWANRLTKEAILNESISELSGYSSLKSEVKYGAERSRIDFMLQADSRPDCYIEVKSVTLAENEQGYFPDAVTERGQKHLRELMSVAAEGQRAVIFFAVLHSAITRFSPARHIDEKYAQLLSEAQQRGVEILAYKAEISAEGMALKKSLPVTL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10950-MONOMER" "soluble lytic murein transglycosylase" ["SltY", "Slt", "Slt70"] "MEKAKQVTWRLLAAGVCLLTVSSVARADSLDEQRSRYAQIKQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPKVKSPVGASGLMQIMPGTATHTVKMFSIPGYSSPGQLLDPETNINIGTSYLQYVYQQFGNNRIFSSAAYNAGPGRVRTWLGNSAGRIDAVAFVESIPFSETRGYVKNVLAYDAYYRYFMGDKPTLMSATEWGRRY" ["CCO-CW-BAC-NEG", "CCO-PERI-BAC"] ["CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 0 -"EG10951-MONOMER" "probable inner membrane protein Smp" ["YtjB", "Smp"] "MARTKLKFRLHRAVIVLFCLALLVALMQGASWFSQNHQRQRNPQLEELARTLARQVTLNVAPLMRTDSPDEKRIQAILDQLTDESRILDAGVYDEQGDLIARSGESVEVRDRLALDGKKAGGYFNQQIVEPIAGKNGPLGYLRLTLDTHTLATEAQQVDNTTNILRLMLLLSLAIGVVLTRTLLQGKRTRWQQSPFLLTASKPVPEEEESEKKE" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG10951-MONOMER" "probable inner membrane protein Smp" ["YtjB", "Smp"] "MARTKLKFRLHRAVIVLFCLALLVALMQGASWFSQNHQRQRNPQLEELARTLARQVTLNVAPLMRTDSPDEKRIQAILDQLTDESRILDAGVYDEQGDLIARSGESVEVRDRLALDGKKAGGYFNQQIVEPIAGKNGPLGYLRLTLDTHTLATEAQQVDNTTNILRLMLLLSLAIGVVLTRTLLQGKRTRWQQSPFLLTASKPVPEEEESEKKE" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG10952-MONOMER" "outer membrane protein assembly factor BamE" ["SmqA", "small membrane protein A", "BamE", "SmpA"] "MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN" ["CCO-MEMBRANE"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 "EG10955-MONOMER" "antitoxin PrlF" ["PrlF", "SohA"] "MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNNPQKTRPFNIQQGKKLVAGMDVNIDDEIGDDE" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"EG10956-MONOMER" "S49 peptidase family protein" ["SohB"] "MELLSEYGLFLAKIVTVVLAIAAIAAIIVNVAQRNKRQRGELRVNNLSEQYKEMKEELAAALMDSHQQKQWHKAQKKKHKQEAKAAKAKAKLGEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMRPSLDIEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLMEGREVVNVRYMQRKRLIDRFTGSAAESADRLLLRWWQRGQKPLM" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG10967-MONOMER" null ["TrmH", "SpoU"] "MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEADADWWATMQAAG" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"EG10968-MONOMER" "protease IV, a signal peptide peptidase" ["SppA"] "MRTLWRFIAGFFKWTWRLLNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFSKLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDKNYRAISYYDYALKTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKVKQWHLEYYVDEPTFFDKVMDNMSGSVRAMLPDAFQAMLPAPLASVASTVKSESDKLAAFNDPQNRYAFCLTCANMR" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"EG10956-MONOMER" "S49 peptidase family protein" ["SohB"] "MELLSEYGLFLAKIVTVVLAIAAIAAIIVNVAQRNKRQRGELRVNNLSEQYKEMKEELAAALMDSHQQKQWHKAQKKKHKQEAKAAKAKAKLGEVATDSKPRVWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYGLAASQLQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMRPSLDIEQVATGEHWYGQQAVEKGLVDEINTSDEVILSLMEGREVVNVRYMQRKRLIDRFTGSAAESADRLLLRWWQRGQKPLM" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG10967-MONOMER" "tRNA (Gm18) 2'-O-methyltransferase" ["TrmH", "SpoU"] "MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEADADWWATMQAAG" [] ["CCO-CYTOSOL"] 0 [] {} 1 +"EG10968-MONOMER" "protease IV, a signal peptide peptidase" ["SppA"] "MRTLWRFIAGFFKWTWRLLNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALLLDISGVIVDKPDSSQRFSKLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDKNYRAISYYDYALKTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKVKQWHLEYYVDEPTFFDKVMDNMSGSVRAMLPDAFQAMLPAPLASVASTVKSESDKLAAFNDPQNRYAFCLTCANMR" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "EG10973-MONOMER" "D-arabinose 5-phosphate isomerase GutQ" ["SrlQ", "GutQ"] "MSEALLNAGRQTLMLELQEASRLPERLGDDFVRAANIILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSSTVNTLMMGDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTVGGTTLQSQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQAGII" [] ["CCO-CYTOSOL"] 1 [] {"ZN+2": 1} 1 "EG10975-MONOMER" "ATP-dependent RNA helicase SrmB" ["RhlA", "RbaB", "SrmB", "DEAD-box RNA helicase"] "MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG10976-MONOMER" "ssDNA-binding protein" ["LexC", "ExrB", "Ssb"] "MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNEPPMDFDDDIPF" ["CCO-CYTOSOL"] ["CCO-BAC-NUCLEOID"] 1 [] {} 1 @@ -752,22 +752,22 @@ "EG10996-MONOMER" "tRNA-guanine transglycosylase" ["Tgt"] "MKFELDTTDGRARRGRLVFDRGVVETPCFMPVGTYGTVKGMTPEEVEATGAQIILGNTFHLWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLGDIRKITEQGVHFRNPINGDPIFLDPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSMEMSLRWAKRSRERFDSLGNKNALFGIIQGSVYEDLRDISVKGLVDIGFDGYAVGGLAVGEPKADMHRILEHVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGHLFVTDGVVKIRNAKYKSDTGPLDPECDCYTCRNYSRAYLHHLDRCNEILGARLNTIHNLRYYQRLMAGLRKAIEEGKLESFVTDFYQRQGREVPPLNVD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 "EG10997-MONOMER" "5-carboxymethylaminomethyluridine-tRNA synthase GTPase subunit" ["MnmE", "TrmE", "ThdF", "GTPase, involved in modification of U34 in tRNA", "5-carboxymethylaminomethyluridine-tRNA synthase subunit MnmE"] "MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPKPRYADYLPFKDADGSVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAGELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK" ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1, "K+": 1} 1 "EG11003-MONOMER" "trigger factor" ["Tig", "chaperone protein Tig"] "MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAIIKEKINPAGAPTYVPGEYKLGEDFTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDADVDGMLDTLRKQQATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMERELKSAIRNRVKSQAIEGLVKANDIDVPAALIDSEIDVLRRQAAQRFGGNEKQALELPRELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKGLIEEMASAYEDPKEVIEFYSKNKELMDNMRNVALEEQAVEAVLAKAKVTEKETTFNELMNQQA" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11004-MONOMER" "oligopeptidase B" ["Tlp", "PtrB", "protease II", "OpdB"] "MLPKAARIPHAMTLHGDTRIDNYYWLRDDTRSQPEVLDYLQQENSYGHRVMASQQALQDRILKEIIDRIPQREVSAPYIKNGYRYRHIYEPGCEYAIYQRQSAFSEEWDEWETLLDANKRAAHSEFYSMGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWIFYYVRKHPVTLLPYQVWRHAIGTPASQDKLIYEEKDDTYYVSLHKTTSKHYVVIHLASATTSEVRLLDAEMADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRMRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETARLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFYAANYRSEHLWIVARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYAMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLVALAQGTLPATPAD" ["CCO-CYTOSOL"] ["CCO-CYTOSKELETON"] 0 [] {} 0 +"EG11004-MONOMER" "oligopeptidase B" ["Tlp", "PtrB", "protease II", "OpdB"] "MLPKAARIPHAMTLHGDTRIDNYYWLRDDTRSQPEVLDYLQQENSYGHRVMASQQALQDRILKEIIDRIPQREVSAPYIKNGYRYRHIYEPGCEYAIYQRQSAFSEEWDEWETLLDANKRAAHSEFYSMGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWIFYYVRKHPVTLLPYQVWRHAIGTPASQDKLIYEEKDDTYYVSLHKTTSKHYVVIHLASATTSEVRLLDAEMADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRMRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETARLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFYAANYRSEHLWIVARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYAMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLVALAQGTLPATPAD" ["CCO-CYTOSOL"] [] 0 [] {} 0 "EG11007-MONOMER" "Tol-Pal system protein TolA" ["Lky", "Cim", "ExcC", "TolA"] "MSKATEQNDKLKRAIIISAVLHVILFAALIWSSFDENIEASAGGGGGSSIDAVMVDSGAVVEQYKRMQSQESSAKRSDEQRKMKEQQAAEELREKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAELKQKQAEEAAAKAAADAKAKAEADAKAAEEAAKKAAADAKKKAEAEAAKAAAEAQKKAEAAAAALKKKAEAAEAAAAEARKKAATEAAEKAKAEAEKKAAAEKAAADKKAAAEKAAADKKAAEKAAAEKAAADKKAAAEKAAADKKAAAAKAAAEKAAAAKAAAEADDIFGELSSGKNAPKTGGGAKGNNASPAGSGNTKNNGASGADINNYAGQIKSAIESKFYDASSYAGKTCTLRIKLAPDGMLLDIKPEGGDPALCQAALAAAKLAKIPKPPSQAVYEVFKNAPLDFKP" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG11008-MONOMER" "Tol-Pal system periplasmic protein TolB" ["Lky", "LkyA"] "MKQALRVAFGFLILWASVLHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 -"EG11009-MONOMER" "outer membrane channel TolC" ["WeeA", "Toc", "RefI", "MukA", "MtcB", "TolC"] "MKKLLPILIGLSLSGFSSLSQAENLMQVYQQARLSNPELRKSAADRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGINSNATSASLQLTQSIFDMSKWRALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYDTVLANEVTARNNLDNAVEQLRQITGNYYPELAALNVENFKTDKPQPVNALLKEAEKRNLSLLQARLSQDLAREQIRQAQDGHLPTLDLTASTGISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGMVNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIVDVLDATTTLYNAKQELANARYNYLINQLNIKSALGTLNEQDLLALNNALSKPVSTNPENVAPQTPEQNAIADGYAPDSPAPVVQQTSARTTTSNGHNPFRN" ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 -"EG11010-MONOMER" "Tol-Pal system protein TolQ" ["Fii", "TolP", "TolQ"] "MTDMNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNAAAREAEAFEDKFWSGIELSRLYQESQGKRDNLTGSEQIFYSGFKEFVRLHRANSHAPEAVVEGASRAMRISMNRELENLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILHRQAFTVSESNKG" ["CCO-CE-BAC", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"EG11009-MONOMER" "outer membrane channel TolC" ["WeeA", "Toc", "RefI", "MukA", "MtcB", "TolC"] "MKKLLPILIGLSLSGFSSLSQAENLMQVYQQARLSNPELRKSAADRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGINSNATSASLQLTQSIFDMSKWRALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYDTVLANEVTARNNLDNAVEQLRQITGNYYPELAALNVENFKTDKPQPVNALLKEAEKRNLSLLQARLSQDLAREQIRQAQDGHLPTLDLTASTGISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGMVNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIVDVLDATTTLYNAKQELANARYNYLINQLNIKSALGTLNEQDLLALNNALSKPVSTNPENVAPQTPEQNAIADGYAPDSPAPVVQQTSARTTTSNGHNPFRN" ["CCO-MEMBRANE", "CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 +"EG11010-MONOMER" "Tol-Pal system protein TolQ" ["Fii", "TolP", "TolQ"] "MTDMNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNAAAREAEAFEDKFWSGIELSRLYQESQGKRDNLTGSEQIFYSGFKEFVRLHRANSHAPEAVVEGASRAMRISMNRELENLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILHRQAFTVSESNKG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG11011-MONOMER" "Tol-Pal system protein TolR" [] "MARARGRGRRDLKSEINIVPLLDVLLVLLLIFMATAPIITQSVEVDLPDATESQAVSSNDNPPVIVEVSGIGQYTVVVEKDRLERLPPEQVVAEVSSRFKANPKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLMTQPI" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"EG11012-MONOMER" "Ton complex subunit TonB" ["ExbA", "TonB"] "MTLDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFKINGTTEIQ" ["CCO-CE-BAC", "CCO-PERI-BAC", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"EG11012-MONOMER" "Ton complex subunit TonB" ["ExbA", "TonB"] "MTLDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFKINGTTEIQ" ["CCO-PERI-BAC", "CCO-PM-BAC-NEG"] ["CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG11013-MONOMER" "DNA topoisomerase I" ["SupX", "TopA", "Topo I", "DNA topoisomerase I (ω protein)", "DNA topoisomerase 1"] "MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPKKDERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPESPNQYASKENSQEAHEAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRILPAVNKGDALTLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCPTCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPENEVLNVLEGEDAETNALRAKRRCPKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHLKMGRFGKYMACTNEECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVFLAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQQDPEGNKTMVRFSRKTKQQYVSSEKDGKATGWSAFYVDGKWVEGKK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 2} 0 "EG11014-MONOMER" "DNA topoisomerase III" ["MutR", "TopB", "Topo III"] "MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCVSALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIVTSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCRYLPEEHFAGRHAVMNAISVHAPDLLPQPVVDPDIRNRCWDDKKVDAHHAIIPTARSSAINLTENEAKVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLLGSKERDEENDGTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHSLPEMATRPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVRQFRGIVAPGSGGSADKKKAAPRKRSAKKSPPADEVGSGAIA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 2} 0 "EG11016-MONOMER" "protamine-like protein" ["Tpr"] "MRSFDQGSTRAPARERCRRQRPEGRSAQR" [] [] 0 [] {} 0 "EG11022-MONOMER" "tRNA m5U54 methyltransferase" ["RumT", "TrmA"] "MTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11023-MONOMER" "tRNA m1G37 methyltransferase" ["TrmD"] "MWIGIISLFPEMFRAITDYGVTGRAVKNGLLSIQSWSPRDFTHDRHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGIDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVSRFIPGVLGHEASATEDSFAEGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11033-MONOMER" "protein chain elongation factor EF-Ts" ["Tsf", "EF1B"] "MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKAQFEEERVALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEVAAMSKQS" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 -"EG11035-MONOMER" "nucleoside-specific channel-forming protein Tsx" ["NupA", "Tsx"] "MKKTLLAAGAVLALSSSFTVNAAENDKPQYLSDWWHQSVNVVGSYHTRFGPQIRNDTYLEYEAFAKKDWFDFYGYADAPVFFGGNSDAKGIWNHGSPLFMEIEPRFSIDKLTNTDLSFGPFKEWYFANNYIYDMGRNKDGRQSTWYMGLGTDIDTGLPMSLSMNVYAKYQWQNYGAANENEWDGYRFKIKYFVPITDLWGGQLSYIGFTNFDWGSDLGDDSGNAINGIKTRTNNSIASSHILALNYDHWHYSVVARYWHDGGQWNDDAELNFGNGNFNVRSTGWGGYLVVGYNF" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 -"EG11036-MONOMER" "translation elongation factor Tu 1" ["PulT", "KirT", "TufA", "EF-Tu", "elongation factor Tu"] "MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 1 [] {} 0 -"EG11037-MONOMER" "translation elongation factor Tu 2" ["PulT", "KirT", "TufB", "EF-Tu", "elongation factor Tu"] "MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 1 [] {} 0 +"EG11035-MONOMER" "nucleoside-specific channel-forming protein Tsx" ["NupA", "Tsx"] "MKKTLLAAGAVLALSSSFTVNAAENDKPQYLSDWWHQSVNVVGSYHTRFGPQIRNDTYLEYEAFAKKDWFDFYGYADAPVFFGGNSDAKGIWNHGSPLFMEIEPRFSIDKLTNTDLSFGPFKEWYFANNYIYDMGRNKDGRQSTWYMGLGTDIDTGLPMSLSMNVYAKYQWQNYGAANENEWDGYRFKIKYFVPITDLWGGQLSYIGFTNFDWGSDLGDDSGNAINGIKTRTNNSIASSHILALNYDHWHYSVVARYWHDGGQWNDDAELNFGNGNFNVRSTGWGGYLVVGYNF" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 0 +"EG11036-MONOMER" "translation elongation factor Tu 1" ["PulT", "KirT", "TufA", "EF-Tu", "elongation factor Tu"] "MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 1 [] {} 0 +"EG11037-MONOMER" "translation elongation factor Tu 2" ["PulT", "KirT", "TufB", "EF-Tu", "elongation factor Tu"] "MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 1 [] {} 0 "EG11038-MONOMER" "DNA replication terminus site-binding protein" ["Tau", "Tus", "ter-binding protein", "TBP", "DNA-binding protein; inhibition of replication at Ter sites"] "MARYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLIIPRLHLYVAD" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11056-MONOMER" "DNA polymerase V catalytic protein" ["Uvm", "UmuC"] "MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLRVK" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11057-MONOMER" "DNA polymerase V protein UmuD" ["UmuD"] "MLFIKPADLREIVTFPLFSDLVQCGFPSPAADYVEQRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAAVDGEFTVKKLQLRPTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAMR" [] [] 0 [] {} 1 @@ -798,7 +798,7 @@ "EG11093-MONOMER" "protein YaiA" ["YaiA"] "MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEHPTAQEAMDAKKRYEDPDKE" [] [] 0 [] {} 0 "EG11094-MONOMER" "ATP-dependent structure-specific DNA nuclease - SbcD subunit" ["YajA", "SbcD", "orf-45"] "MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYARTLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNTTVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIITSQAGLNGIEKQQHLLAAITDYYQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYIALGHIHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVTQPMAVLKGDLASITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVEVLLVRRSREQRERVLASQQRETLSELSVEEVFNRRLALEELDESQQQRLQHLFTTTLHTLAGEHEA" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11095-MONOMER" null ["YajB", "AcpH"] "MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHMHRRIDVLTDNLPEVREAREWFRSETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFVCYAREQVMTILPDSPPRFINLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALRDSWYDLDAHYDALETRFWQFYPRMMAQASRKAL" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11096-MONOMER" "Sec translocon accessory complex subunit YajC" ["YajC"] "MSFFISDAVAATGAPAQGSPMSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAENGYIAIALNDTTEVVIKRDFVAAVLPKGTMKAL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"EG11096-MONOMER" "Sec translocon accessory complex subunit YajC" ["YajC"] "MSFFISDAVAATGAPAQGSPMSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAENGYIAIALNDTTEVVIKRDFVAAVLPKGTMKAL" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "EG11097-MONOMER" "HNH nuclease family protein YajD" ["YajD"] "MAIIPKNYARLESGYREKALKIYPWVCGRCSREFVYSNLRELTVHHIDHDHTNNPEDGSNWELLCLYCHDHEHSKYTEADQYGTTVIAGEDAQKDVGEAKYNPFADLKAMMNKKK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11098-MONOMER" "exodeoxyribonuclease VII subunit XseB" ["YajE", "XseB", "exonuclease VII, small subunit"] "MPKKNEAPASFEKALSELEQIVTRLESGDLPLEEALNEFERGVQLARQGQAKLQQAEQRVQILLSDNEDASLTPFTPDNE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "EG11099-MONOMER" "DUF1428 domain-containing protein YbaA" ["YbaA"] "MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE" [] [] 0 [] {} 0 @@ -807,18 +807,18 @@ "EG11103-MONOMER" "LuxR family transcriptional regulator FimZ" ["YbcA", "FimZ"] "MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRPVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTVTVLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYELI" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11105-MONOMER" "proofreading thioesterase in enterobactin biosynthesis" ["YbdB", "EntH"] "MIWKRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQCVVGTELNATHHRPVSEGKVRGVCQPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAVLG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11108-MONOMER" "DUF1722 domain-containing protein YbgA" ["Tkp", "YbgA"] "MNLQRFDDSTLIRIFALHELHRLKEHGLTRGALLDYHSRYKLVFLAHSQPEYRKLGPFVADIHQWQNLDDYYNQYRQRVVVLLSHPANPRDHTNVLMHVQGYFRPHIDSTERQQLAALIDSYRRGEQPLLAPLMRIKHYMALYPDAWLSGQRYFELWPRVINLRHSGVL" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11110-MONOMER" "esterase/thioesterase" ["YbgC"] "MNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 +"EG11110-MONOMER" "esterase/thioesterase" ["YbgC"] "MNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "EG11111-MONOMER" "DNA replication inhibitor CspD" ["YbjA", "CspH", "CspD"] "MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11112-MONOMER" "leucyl/phenylalanyl-tRNA—protein transferase" ["YcaA", "Aat", "leucyl, phenylalanyl-tRNA-protein transferase"] "MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11113-MONOMER" "modulator of FtsH protease" ["YccA"] "MDRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMYGLMFLTYKTANKPTGIISAFAFTGFLGYILGPILNTYLSAGMGDVIAMALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILISSGAILFETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11116-MONOMER" "tRNA U34 hydroxylase TrhO" ["TrhO", "YceA", "UPF0176 protein YceA", "tRNA wobble base hydroxylase TrhO"] "MPVLHNRISNDALKAKMLAESEPRTTISFYKYFHIADPKATRDALYQLFTALNVFGRVYLAHEGINAQISVPASNVETFRAQLYAFDPALEGLRLNIALDDDGKSFWVLRMKVRDRIVADGIDDPHFDASNVGEYLQAAEVNAMLDDPDALFIDMRNHYEYEVGHFENALEIPADTFREQLPKAVEMMQAHKDKKIVMYCTGGIRCEKASAWMKHNGFNKVWHIEGGIIEYARKAREQGLPVRFIGKNFVFDERMGERISDEIIAHCHQCGAPCDSHTNCKNDGCHLLFIQCPVCAEKYKGCCSEICCEESALPPEEQRRRRAGRENGNKIFNKSRGRLNTTLCIPDPTE" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11117-MONOMER" "putative lipid-binding lipoprotein YceB" ["YceB"] "MNKFLFAAALIVSGLLVGCNQLTQYTITEQEINQSLAKHNNFSKDIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDMNSLFGSQKATMKLKLKALPVFDKEKGAIFLKEMEVVDATVQPEKMQTVMQTLLPYLNQALRNYFNQQPAYVLREDGSQGEAMAKKLAKGIEVKPGEIVIPFTD" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"EG11117-MONOMER" "putative lipid-binding lipoprotein YceB" ["YceB"] "MNKFLFAAALIVSGLLVGCNQLTQYTITEQEINQSLAKHNNFSKDIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDMNSLFGSQKATMKLKLKALPVFDKEKGAIFLKEMEVVDATVQPEKMQTVMQTLLPYLNQALRNYFNQQPAYVLREDGSQGEAMAKKLAKGIEVKPGEIVIPFTD" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11118-MONOMER" "23S rRNA pseudouridine955/2504/2580 synthase" ["YceC", "RluC", "ribosomal large subunit pseudouridine synthase C", "ribosomal large subunit (23S rRNA) pseudouridine synthase C"] "MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11119-MONOMER" "DUF177 domain-containing protein YceD" ["YceD", "G30K"] "MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSDVECSMSFAIDNQRLAVLNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQKPNPFAVLASLKRK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11120-MONOMER" "e14 prophage; putative tail fiber assembly protein TfaE" ["TfaE", "YcfA"] "MHKAILNSDLIATKAGDVTVYNYDGETREYISTSNEYLAVGVGIPACSCLDAPGTHKAGYAICRSADFNSWEYVPDHRGETVYSTKTGESKEIKAPGDYPENTTTIAPLSPYDKWDGEKWVTDTEAQHSAAVDAAEAQRQSLIDAAMASISLIQLKLQAGRKLTQAETTRLNAVLDYIDAVTATDTSTAPDVIWPELPEA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11121-MONOMER" "acyl-CoA thioesterase YciA" ["YciA"] "MSTTHNVPQGDLVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVQKGTTSVSINIEVWVKKVASEPIGQRYKATEALFKYVAVDPEGKPRALPVE" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11122-MONOMER" "inner membrane protein" ["YciB"] "MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRFRKVEKMALITFVLVVVFGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQRMLGKELTLPQPVWSKLNLAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLIFTLLSGIYIYRHMPQEDKS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG11123-MONOMER" "putative inner membrane protein" ["YciC"] "MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPSDAQLAQLNDGVPVSGSSGLFDLVQNMSPEQQQILLQASAASTFSGLIGNAILAGGVILIIQLVSAGQRVSALRAIGASAPILPKLFILIFLTTLLVQIGIMLVVVPGIIMAILLALAPVMLVQDKMGVFASMRSSMRLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEIGAVLANTLSNLISAILLIYLFRLYMLIRQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11122-MONOMER" "inner membrane protein YciB" ["YciB"] "MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRFRKVEKMALITFVLVVVFGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQRMLGKELTLPQPVWSKLNLAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLIFTLLSGIYIYRHMPQEDKS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11123-MONOMER" "putative inner membrane protein" ["YciC"] "MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPSDAQLAQLNDGVPVSGSSGLFDLVQNMSPEQQQILLQASAASTFSGLIGNAILAGGVILIIQLVSAGQRVSALRAIGASAPILPKLFILIFLTTLLVQIGIMLVVVPGIIMAILLALAPVMLVQDKMGVFASMRSSMRLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEIGAVLANTLSNLISAILLIYLFRLYMLIRQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11124-MONOMER" "outer membrane protein W" ["YciD", "OmpW"] "MKKLTVAALAVTTLLSGSAFAHEAGEFFMRAGSATVRPTEGAGGTLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 "EG11125-MONOMER" "DUF892 domain-containing protein YciE" ["YciE"] "MNRIEHYHDWLRDAHAMEKQAESMLESMASRIDNYPELRARIEQHLSETKNQIVQLETILDRNDISRSVIKDSMSKMAALGQSIGGIFPSDEIVKGSISGYVFEQFEIACYTSLLAAAKNAGDTASIPTIEAILNEEKQMADWLIQNIPQTTEKFLIRSETDGVEAKK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11126-MONOMER" "DUF892 domain-containing protein YciF" ["YciF"] "MNMKTIEDVFIHLLSDTYSAEKQLTRALAKLARATSNEKLSQAFHAHLEETHGQIERIDQVVESESNLKIKRMKCVAMEGLIEEANEVIESTEKNEVRDAALIAAAQKVEHYEIASYGTLATLAEQLGYRKAAKLLKETLEEEKATDIKLTDLAINNVNKKAENKA" [] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -828,19 +828,19 @@ "EG11130-MONOMER" "Qin prophage; toxic protein HokD" ["HokD", "RelF", "Qin prophage; small toxic polypeptide"] "MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 "EG11131-MONOMER" "Qin prophage; mRNA interferase toxin RelE" ["RelE", "Qin prophage, toxin of the RelE-RelB toxin-antitoxin system / cofactor to enhance the repressor activity of RelB"] "MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGKRERSEVYSEAVKRIL" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11132-MONOMER" "phosphoenolpyruvate synthetase regulatory protein" ["PpsR", "YdiA", "PEP synthetase regulatory protein"] "MDNAVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVENESRARAVKDQIDAIYHQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQEMKLDPTPIAHRTHGLNPNNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSRCGKTPTSLYLAMQFGIRAANYPFIADDMDNLVLPASLKPLQHKLFGLTIDPERLAAIREERRENSRYASLRQCRMEVAEVEALYRKNQIPWINSTNYSVEEIATKILDIMGLSRRMY" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"EG11133-MONOMER" "NlpC/P60 family lipoprotein NlpC" ["NlpC"] "MRFCLILITALLLAGCSHHKAPPPNARLSDSITVIAGLNDQLQSWHGTPYRYGGMTRRGVDCSGFVVVTMRDRFDLQLPRETKQQASIGTQIDKDELLPGDLVFFKTGSGQNGLHVGIYDTNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 0 +"EG11133-MONOMER" "NlpC/P60 family lipoprotein NlpC" ["NlpC"] "MRFCLILITALLLAGCSHHKAPPPNARLSDSITVIAGLNDQLQSWHGTPYRYGGMTRRGVDCSGFVVVTMRDRFDLQLPRETKQQASIGTQIDKDELLPGDLVFFKTGSGQNGLHVGIYDTNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 "EG11134-MONOMER" "putative oxidoreductase YdjA" ["YdjA"] "MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQLKASTSINVPDPTPFVTYF" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11136-MONOMER" "putative papain-like amidase YebB" ["YebB"] "MNINYPAEYEIGDIVFTCIGAALFGQISAASNCWSNHVGIIIGHNGEDFLVAESRVPLSTITTLSRFIKRSSNQRYAIKRLDAGLTERQKQRIVEQVPSRLRKLYHTGFKYESSRQFCSKFVFDIYKEALCIPVGEIETFGELLNSNPNAKLTFWKFWFLGSIPWERKTVTPASLWHHPGLVLIHAEGVETPQPELTEAV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11137-MONOMER" "putative transcriptional regulator YebC" ["YebC"] "MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGEISDEVAATL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11139-MONOMER" "uncharacterized iron-binding protein YecA" ["YecA"] "MKTGPLNESELEWLDDILTKYNTDHAILDVAELDGLLTAVLSSPQEIEPEQWLVAVWGGADYVPRWASEKEMTRFMNLAFQHMADTAERLNEFPEQFEPLFGLREVDGSELTIVEEWCFGYMRGVALSDWSTLPDSLKPALEAIALHGTEENFERVEKMSPEAFEESVDAIRLAALDLHAYWMAHPQEKAVQQPIKAEEKPGRNDPCPCGSGKKFKQCCLH" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"EG11139-MONOMER" "uncharacterized Fe-binding protein YecA" ["YecA", "uncharacterized iron-binding protein YecA"] "MKTGPLNESELEWLDDILTKYNTDHAILDVAELDGLLTAVLSSPQEIEPEQWLVAVWGGADYVPRWASEKEMTRFMNLAFQHMADTAERLNEFPEQFEPLFGLREVDGSELTIVEEWCFGYMRGVALSDWSTLPDSLKPALEAIALHGTEENFERVEKMSPEAFEESVDAIRLAALDLHAYWMAHPQEKAVQQPIKAEEKPGRNDPCPCGSGKKFKQCCLH" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11140-MONOMER" "DNA-binding transcriptional activator UvrY" ["YecB", "UvrY", "UvrY response regulator"] "MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11141-MONOMER" "putative transporter YedA" ["YedA"] "MRFRQLLPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGVRFLAAGILLLAFLLLRGHKLPPLRPLLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRLFGIKTRKLEWVGIAIGLAGIIMLNSGGNLSGNPWGAILILIGSISWAFGSVYGSRITLPVGMMAGAIEMLAAGVVLMIASMIAGEKLTALPSLSGFLAVGYLALFGSIIAINAYMYLIRNVSPALATSYAYVNPVVAVLLGTGLGGETLSKIEWLALGVIVFAVVLVTLGKYLFPAKPVVAPVIQDASSE" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11142-MONOMER" "DUF2138 domain-containing protein YfaA" ["PufY", "YfaA"] "MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIAGDLLSGKKRWQASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL" ["CCO-CYTOSOL"] [] 0 [] {} 0 "EG11144-MONOMER" "putative transporter YfcA" ["YfcA"] "METFNSLFMVSPLLLGVLFFVAMLAGFIDSIAGGGGLLTIPALMAAGMSPANALATNKLQACGGSISATIYFIRRKVVSLSDQKLNIAMTFVGSMSGALLVQYVQADVLRQILPILVICIGLYFLLMPKLGEEDRQRRMYGLPFALIAGGCVGFYDGFFGPAAGSFYALAFVTLCGFNLAKATAHAKLLNATSNIGGLLLFILGGKVIWATGFVMLVGQFLGARMGSRLVLSKGQKLIRPMIVIVSAVMSAKLLYDSHGQEILHWLGMN" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG11145-MONOMER" "putative cyclic di-GMP phosphodiesterase PdeA" ["PdeA", "YfeA"] "MFVEHNLIKNIKIFTLAFTLTVVLIQLSRFISPLAIIHSSYIFLAWMPLCVMLSILFIFGWRGVVPVLCGMFCTNLWNFHLSFLQTAVMLGSQTFVVLCACAILRWQLGTRWRYGLTSRYVWQRLFWLGLVTPIGIKCSMYLVGSFFDFPLKISTFFGDADAIFTVVDLLSLFTAVLIYNMLFYYLTRMIVSPHFAQILWRRDIAPSLGKEKRAFTLSWLAALSVLLLLLCTPYENDFIAGYLVPVFFIIFTLGVGKLRYPFLNLTWAVSTLCLLNYNQNFLQGVETEYSLAFILAVLISFSVCLLYMVRIYHRSEWLNRRWHLQALTDPLTLLPNFRALEQAPEQEAGKSFCCLRIDNLEFMSRHYGLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILNSRQIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQTTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGEGYDEILARLKYDGGIMTPDKFLPLIAQFNLSARFDLQVLESLLKWLATHPCDKKGPRFSVNLMPLTLLQKNIAGRIIRLFKRYHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADIIKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGYLIGRPQPLAD" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11145-MONOMER" "putative cyclic di-GMP phosphodiesterase PdeA" ["PdeA", "YfeA"] "MFVEHNLIKNIKIFTLAFTLTVVLIQLSRFISPLAIIHSSYIFLAWMPLCVMLSILFIFGWRGVVPVLCGMFCTNLWNFHLSFLQTAVMLGSQTFVVLCACAILRWQLGTRWRYGLTSRYVWQRLFWLGLVTPIGIKCSMYLVGSFFDFPLKISTFFGDADAIFTVVDLLSLFTAVLIYNMLFYYLTRMIVSPHFAQILWRRDIAPSLGKEKRAFTLSWLAALSVLLLLLCTPYENDFIAGYLVPVFFIIFTLGVGKLRYPFLNLTWAVSTLCLLNYNQNFLQGVETEYSLAFILAVLISFSVCLLYMVRIYHRSEWLNRRWHLQALTDPLTLLPNFRALEQAPEQEAGKSFCCLRIDNLEFMSRHYGLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILNSRQIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQTTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGEGYDEILARLKYDGGIMTPDKFLPLIAQFNLSARFDLQVLESLLKWLATHPCDKKGPRFSVNLMPLTLLQKNIAGRIIRLFKRYHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADIIKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGYLIGRPQPLAD" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11146-MONOMER" "DNA-binding transcriptional activator XapR" ["YfeB", "PndR", "XapR"] "MERVYRTDLKLLRYFLAVAEELHFGRAAARLNMSQPPLSIHIKELENQLGTQLFIRHSRSVVLTHAGKILMEESRRLLVNANNVLARIEQIGRGEAGRIELGVVGTAMWGRMRPVMRRFLRENPNVDVLFREKMPAMQMALLERRELDAGIWRMATEPPTGFTSLRLHESAFLVAMPEEHHLSSFSTVPLEALRDEYFVTMPPVYTDWDFLQRVCQQVGFSPVVIREVNEPQTVLAMVSMGIGITLIADSYAQMNWPGVIFRPLKQRIPADLYIVYETQQVTPAMVKLLAALTQ" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11147-MONOMER" "putative reductase YffB" ["YffB"] "MVTLYGIKNCDTIKKARRWLEANNIDYRFHDYRVDGLDSELLNDFINELGWEALLNTRGTTWRKLDETTRNKITDAASAAALMTEMPAIIKRPLLCVPGKPMLLGFSDSSYQQFFHEV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11149-MONOMER" "putative transcriptional regulator GcvR" ["GcvR", "YffD"] "MTLSSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMKRTTARPRPPMPASVWVQVDVADSPHLIERFTALFDAHHMNIAELVSRTQPAENERAAQLHIQITAHSPASADAANIEQAFKALCTELNAQGSINVVNYSQHDEQDGVK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 +"EG11149-MONOMER" "transcriptional regulator GcvR" ["GcvR", "YffD"] "MTLSSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMKRTTARPRPPMPASVWVQVDVADSPHLIERFTALFDAHHMNIAELVSRTQPAENERAAQLHIQITAHSPASADAANIEQAFKALCTELNAQGSINVVNYSQHDEQDGVK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "EG11151-MONOMER" "ribosome-associated inhibitor A" ["YfiA", "Urf1", "RaiA", "pY", "stationary phase translation inhibitor and ribosome stability factor"] "MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "EG11152-MONOMER" "lipoprotein YfiB" ["YfiB"] "MIKHLVAPLVFTSLILTGCQSPQGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITTP" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 "EG11153-MONOMER" "ribosome maturation factor RimM" ["YfjA", "RimM", "21K"] "MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF" ["CCO-CYTOSOL"] ["CCO-RIBOSOME", "CCO-CYTOSOL"] 0 [] {} 0 @@ -848,7 +848,7 @@ "EG11155-MONOMER" "DUF2509 domain-containing protein YgdB" ["YgdB"] "MNREKGVSSLALVLMLLVLGSLLLQGMSQQDRSFASRVSMESQSLRRQAIVQSALAWGKMHCWQTQPAVQCSQYAETDAQVCLRLLADNEALLIAGYEGVSLWRTGEVIDGNIVFSPRGWSDFCPLKERALCQLP" [] ["CCO-MEMBRANE"] 0 [] {} 0 "EG11156-MONOMER" "prepilin-type N-terminal cleavage/methylation domain-containing protein PpdB" ["YgdC", "PpdB"] "MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRKLALEDEIWLRVFTVAKHLQRAGYCHGICTGEGLEIVGQGDCVIVQWDANSNGIWDREPVKESDQIGFRLKEHVLETLRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVLTVNMRAASKSEPQTVVNASYSVTGFNL" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "EG11157-MONOMER" "amino acid racemase YgeA" ["YgeA"] "MKTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQVLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCTLPFLHIADATGRAITGAGMTRVALLGTRYTMEQDFYRGRLTEQFSINCLIPEADERAKINQIIFEELCLGQFTEASRAYCAQVIARLAEQGAQGVIFGCTEIGLLVPEERSVLPVFDTAAIHAEDAVAFMLS" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"EG11158-MONOMER" "putative 5-formyltetrahydrofolate cyclo-ligase" ["Fau", "YgfA"] "MIRQRRRALTPEQQQEMGQQAATRMMTYPPVVMAHTVAVFLSFDGELDTQPLIEQLWRAGKRVYLPVLHPFSAGNLLFLNYHPQSELVMNRLKIHEPKLDVRDVLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHYKTQPVGYAHDCQLVEKLPVEEWDIPLPAVVTPSKVWEW" [] [] 0 [] {} 0 +"EG11158-MONOMER" "5-formyltetrahydrofolate cyclo-ligase" ["Fau", "YgfA"] "MIRQRRRALTPEQQQEMGQQAATRMMTYPPVVMAHTVAVFLSFDGELDTQPLIEQLWRAGKRVYLPVLHPFSAGNLLFLNYHPQSELVMNRLKIHEPKLDVRDVLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHYKTQPVGYAHDCQLVEKLPVEEWDIPLPAVVTPSKVWEW" [] [] 0 [] {} 0 "EG11160-MONOMER" "small conductance mechanosensitive channel MscS" ["MscS", "YggB"] "MEDLNVVDSINGAGSWLVANQALLLSYAVNIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFKRVKEDKAA" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG11161-MONOMER" "P-loop NTPase domain-containing protein YggC" ["YggC"] "MKIELTVNGLKIQAQYQNEEIENVHKPLLHMLAALQTVNPQRRTVVFLCAPPGTGKSTLTTFWEYLAQQDPELPAIQTLPMDGFHHYNSWLDAHQLRPFKGAPETFDVAKLTENLRQVVEGDCTWPQYDRQKHDPVEDALHVTAPLVIVEGNWLLLDDEKWLELASFCDFSIFIHAPAQILRERLISRKIAGGLTRQVAEAFYARTDGPNVERVLMNSRQANLIVEMTEEGRYHFTS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11162-MONOMER" "fumarase E" ["FumE", "YggD", "predicted DNA-binding transcriptional regulator"] "MATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRNAMLYDALKAMKFADFSVWSEARFSGMVKTALTLAVTTTLKELTP" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -865,12 +865,12 @@ "EG11180-MONOMER" "large conductance mechanosensitive channel" ["YhdC", "MscL"] "MSIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVTLRDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKEEPAAAPAPTKEEVLLTEIRDLLKEQNNRS" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG11181-MONOMER" "bacterioferritin-associated ferredoxin" ["YheA", "Bfd"] "MYVCLCNGISDKKIRQAVRQFSPHSFQQLKKFIPVGNQCGKCVRAAREVMEDELMQLPEFKESA" [] ["CCO-CYTOSOL"] 0 [] {"CPD-6": 1} 0 "EG11182-MONOMER" "OsmC family protein YhfA" ["YhfA"] "MQARVKWVEGLTFLGESASGHQILMDGNSGDKAPSPMEMVLMAAGGCSAIDVVSILQKGRQDVVDCEVKLTSERREEAPRLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYCSVALMLEKAVNITHSYEVVAA" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11183-MONOMER" "cell division protein DamX" ["YhfB", "DamX"] "MDEFKPEDELKPDPSDRRTGRSRQSSERSERTERGEPQINFDDIELDDTDDRRPTRAQKERNEEPEIEEEIDESEDETVDEERVERRPRKRKKAASKPASRQYMMMGVGILVLLLLIIGIGSALKAPSTTSSDQTASGEKSIDLAGNATDQANGVQPAPGTTSAENTQQDVSLPPISSTPTQGQTPVATDGQQRVEVQGDLNNALTQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRDTAKTQTAERPSTTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGAKTAGNVGSLKSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADVQAKNPWAKPLRQVQADLK" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"EG11183-MONOMER" "cell division protein DamX" ["YhfB", "DamX"] "MDEFKPEDELKPDPSDRRTGRSRQSSERSERTERGEPQINFDDIELDDTDDRRPTRAQKERNEEPEIEEEIDESEDETVDEERVERRPRKRKKAASKPASRQYMMMGVGILVLLLLIIGIGSALKAPSTTSSDQTASGEKSIDLAGNATDQANGVQPAPGTTSAENTQQDVSLPPISSTPTQGQTPVATDGQQRVEVQGDLNNALTQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRDTAKTQTAERPSTTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGAKTAGNVGSLKSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADVQAKNPWAKPLRQVQADLK" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11184-MONOMER" "DUF2756 domain-containing protein YhhA" ["YhhA"] "MKRLLILTALLPFVGFAQPINTLNNPNQPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLKTQTQLQQQHLENQINNNSQRVLQSQPGERNPARQQMLPNTNGGMLNSNRNPDSSLNQQHMLPERRNGDMLNQPSTPQPDIPLKTIGP" [] [] 0 [] {} 0 -"EG11186-MONOMER" "PF05360 family inner membrane protein YiaA" ["YiaA"] "MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDAGINPPKETQVTQEEYSE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11186-MONOMER" "PF05360 family inner membrane protein YiaA" ["YiaA"] "MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDAGINPPKETQVTQEEYSE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11187-MONOMER" "putative lyase containing HEAT-repeat" ["YibA"] "MSNTYQKRKASKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKLKRS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11188-MONOMER" "protein HtrL" ["YibB", "HtrL"] "MKSSTTIITAYFDIGRGDWTANKGFREKLARSVDVYFSYFERLAALENEMIIFTSPDLKPRVEAIRNGKPTTVIVIDIKKKFRYIRSRIEKIQKDESFTNRLEPRQLKNPEYWSPEYVLVCNLKAYFVNKAINMGLVKTPLVAWIDFGYCHKPNVTRGLKIWDFPFDESKMHLFTIKKGLTVTSQQQVFDFMIGNHVYIIGGAIVGSQHKWKEFYKLVLESQKITLNNNIVDDDQGIFVMCYYKRPDLFNLNYLGRGKWFDLFRCFRSNTLGAKMQALRIFLSRK" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11189-MONOMER" "ADP-heptose:LPS heptosyltransferase 1" ["YibC", "WaaC", "RfaC", "ADP-heptose:LPS heptosyltransferase I"] "MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWHAAVERVIPVAIRRWRKAWFSAPIKAERKAFREALQAENYDAVIDAQGLVKSAALVTRLAHGVKHGMDWQTAREPLASLFYNRKHHIAKQQHAVERTRELFAKSLGYSKPQTQGDYAIAQHFLTNLPTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPRENLINLNSQAVLEKLSSL" [] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11189-MONOMER" "ADP-heptose:LPS heptosyltransferase 1" ["YibC", "WaaC", "RfaC", "ADP-heptose:LPS heptosyltransferase I"] "MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWHAAVERVIPVAIRRWRKAWFSAPIKAERKAFREALQAENYDAVIDAQGLVKSAALVTRLAHGVKHGMDWQTAREPLASLFYNRKHHIAKQQHAVERTRELFAKSLGYSKPQTQGDYAIAQHFLTNLPTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPRENLINLNSQAVLEKLSSL" [] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11191-MONOMER" "nucleoid occlusion factor SlmA" ["YicB", "Ttk", "SlmA"] "MAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFGERNPGLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVLREKRMREGEGYTTDETLLASQILAFCEGMLSRFVRSEFKYRPTDDFDARWPLIAAQLQ" ["CCO-BAC-NUCLEOID"] ["CCO-CYTOSOL", "CCO-BAC-NUCLEOID"] 0 [] {} 1 "EG11192-MONOMER" "putative RNase adaptor protein YicC" ["YicC", "UPF0701 family protein YicC"] "MIRSMTAYARREIKGEWGSATWEMRSVNQRYLETYFRLPEQFRSLEPVVRERIRSRLTRGKVECTLRYEPDVSAQGELILNEKLAKQLVTAANWVKMQSDEGEINPVDILRWPGVMAAQEQDLDAIAAEILAALDGTLDDFIVARETEGQALKALIEQRLEGVTAEVVKVRSHMPEILQWQRERLVAKLEDAQVQLENNRLEQELVLLAQRIDVAEELDRLEAHVKETYNILKKKEAVGRRLDFMMQEFNRESNTLASKSINAEVTNSAIELKVLIEQMREQIQNIE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11193-MONOMER" "DNA damage-inducible protein D" ["YicD", "PcsA", "DinD"] "MNEHHQPFEEIKLINANGAEQWSARQLGKLLGYSEYRHFIPVLTRAKEACENSGHTIDDHFEEILDMVKIGSNAKRALKDIVLSRYACYLVVQNGDPAKPVIAAGQTYFAIQTRRQELADDEAFKQLREDEKRLFLRNELKEHNKQLVEAAQQAGVATATDFAIFQNHGYQGLYGGLDQKAIHQRKGLKKNQKILDHMGSTELAANLFRATQTEEKLKRDGVNSKQQANTTHFDVGRKVRQTIQELGGTMPEELPTPQVSIKQLENSVKITEKK" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -882,13 +882,13 @@ "EG11203-MONOMER" "GTP-binding protein YihA" ["EngB", "YihA", "cell division protein; putative checkpoint GTPase"] "MTNLNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQPVEETQDGE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "EG11206-MONOMER" "stress response protein" ["YjaA"] "MSVLYIQIRRNQITVRDLESKREVSGDAAFSNQRLLIANFFVAEKVLQDLVLQLHPRSTWHSFLPAKRMDIVVSALEMNEGGLSQVEERILHEVVAGATLMKYRQFHIHAQSAVLSDSAVMAMLKQK" [] ["CCO-MEMBRANE"] 0 [] {} 0 "EG11207-MONOMER" "peptidyl-lysine N-acetyltransferase YjaB" ["YjaB"] "MVISIRRSRHEEGEELVAIWCRSVDATHDFLSAEYRTELEDLVRSFLPEAPLWVAVNERDQPVGFMLLSGQHMDALFIDPDVRGCGVGRVLVEHALSMAPELTTNVNEQNEQAVGFYKKVGFKVTGRSEVDDLGKPYPLLNLAYVGA" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11208-MONOMER" "regulator of acetyl CoA synthetase" ["ArpA", "YjaC", "Arp"] "MITRIPRSSFSANINNTAQTNEHQTLSELFYKELEDKFSGKELATPLLKSFSENCRQNGRHIFSNKDFVIKFSTSVLQADKKEITIINKNENTTLTQTIAPIFEKYLMEILPQRSDTLDKQELNLKSDRKEKEFPRIKLNGQCYFPGRPQNRIVCRHIAAQYINDIYQNVDYKPHQDDYSSAEKFLTHFNKKCKNQTLALVSSRPEGRCVAACGDFGLVMKAYFDKMESNGISVMAAILLVDNHALTVRLRIKNTTEGCTHYVVSVYDPNVTNDKIRIMSESKENIKHYSLMDFMNVDYSLLKWSNDHVINQSVAIIPALPKEQLLMLKGSVDEITPPLSPATMNLLMAIGQNHQLTQLMIQLQKMPELHRTEMLTAYNSINLPGLYLAINYGNADIVETIFNSLSETGYEGLLSKKNLMHILEAKDKNGFSGLFLAISRKDKNVVTSILNALPKLAATHHLDNEQVYKFLSAKNRTSSHVLYHVMANGDADMLKIVLNALPLLIRTCHLTKEQVLDLLKAKDFYGCPGLYLAMQNGHSDIVKVILEALPSLAQEINISASDIVDLLTAKSLARDTGLFMAMQRGHMNVINTIFNALPTLFNTFKFDKKNMKPLLLANNSNEYPGLFSAIQHKQQNVVETVYLALSDHARLFGFTAEDIMDFWQHKAPQKYSAFELAFEFGHRVIAELILNTLNKMAESFGFTDNPRYIAEKNYMEALLKKASPHTVR" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 +"EG11208-MONOMER" "regulator of acetyl CoA synthetase" ["ArpA", "YjaC", "Arp"] "MITRIPRSSFSANINNTAQTNEHQTLSELFYKELEDKFSGKELATPLLKSFSENCRQNGRHIFSNKDFVIKFSTSVLQADKKEITIINKNENTTLTQTIAPIFEKYLMEILPQRSDTLDKQELNLKSDRKEKEFPRIKLNGQCYFPGRPQNRIVCRHIAAQYINDIYQNVDYKPHQDDYSSAEKFLTHFNKKCKNQTLALVSSRPEGRCVAACGDFGLVMKAYFDKMESNGISVMAAILLVDNHALTVRLRIKNTTEGCTHYVVSVYDPNVTNDKIRIMSESKENIKHYSLMDFMNVDYSLLKWSNDHVINQSVAIIPALPKEQLLMLKGSVDEITPPLSPATMNLLMAIGQNHQLTQLMIQLQKMPELHRTEMLTAYNSINLPGLYLAINYGNADIVETIFNSLSETGYEGLLSKKNLMHILEAKDKNGFSGLFLAISRKDKNVVTSILNALPKLAATHHLDNEQVYKFLSAKNRTSSHVLYHVMANGDADMLKIVLNALPLLIRTCHLTKEQVLDLLKAKDFYGCPGLYLAMQNGHSDIVKVILEALPSLAQEINISASDIVDLLTAKSLARDTGLFMAMQRGHMNVINTIFNALPTLFNTFKFDKKNMKPLLLANNSNEYPGLFSAIQHKQQNVVETVYLALSDHARLFGFTAEDIMDFWQHKAPQKYSAFELAFEFGHRVIAELILNTLNKMAESFGFTDNPRYIAEKNYMEALLKKASPHTVR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11209-MONOMER" "putative phosphate starvation-inducible protein PsiE" ["PsiE", "YjbA"] "MTSLSRPRVEFISTILQTVLNLGLLCLGLILVVFLGKETVHLADVLFAPEQTSKYELVEGLVVYFLYFEFIALIVKYFQSGFHFPLRYFVYIGITAIVRLIIVDHKSPLDVLIYSAAILLLVITLWLCNSKRLKRE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11210-MONOMER" "regulator of diguanylate cyclase RdcA" ["RdcA", "CrfC", "YjdA", "clamp-binding protein CrfC", "clamp-binding sister replication fork colocalization protein"] "MYTQTLYELSQEAERLLQLSRQQLQLLEKMPLSVPGDDAPQLALPWSQPNIAERHAMLNNELRKISRLEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTDVLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARYELANNGKLPPPEQQRWVEDFAHAALGRRWRHADLADLEHIRHAADQLWEDSLFAQPIQALLHAAYANASLYALRSAAHKLLNYAQQAREYLDFRAHGLNVACEQLRQNIHQIEESLQLLQLNQAQVSGEIKHEIELALTSANHFLRQQQDALKVQLAALFQDDSEPLSEIRTRCETLLQTAQNTISRDFTLRFAELESTLCRVLTDVIRPIEQQVKMELSESGFRPGFHFPVFHGVVPHFNTRQLFSEVISRQEATDEQSTRLGVVRETFSRWLNQPDWGRGNEKSPTETVDYSVLQRALSAEVDLYCQQMAKVLAEQVDESVTAGMNTFFAEFASCLTELQTRLRESLALRQQNESVVRLMQQQLQQTVMTHGWIYTDAQLLRDDIQTLFTAERY" ["CCO-BAC-NUCLEOID"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11211-MONOMER" "EF-P-lysine lysyltransferase" ["EpmA", "YjeA", "GenX", "PoxA"] "MSETASWQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDRA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11212-MONOMER" "DNA-binding transcriptional regulator NsrR" ["YjeB", "NsrR"] "MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELEPLSLVNCSSEFCHITPACRLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLLLVE" [] ["CCO-CYTOSOL"] 0 [] {"CPD-6": 1} 1 "EG11214-MONOMER" "DUF2501 domain-containing protein YjjA" ["YjjA"] "MMKTVKHLLCCAIAASALISTGVHAASWKDALSSAASELGNQNSTTQEGGWSLASLTNLLSSGNQALSADNMNNAAGILQYCAKQKLASVTDAENIKNQVLEKLGLNSEEQKEDTNYLDGIQGLLKTKDGQQLNLDNIGTTPLAEKVKTKACDLVLKQGLNFIS" ["CCO-CYTOSOL"] [] 0 [] {} 0 -"EG11215-MONOMER" "putative succinate exporter YjjB" ["YjjB"] "MGVIEFLLALAQDMILAAIPAVGFAMVFNVPVRALRWCALLGSIGHGSRMILMTSGLNIEWSTFMASMLVGTIGIQWSRWYLAHPKVFTVAAVIPMFPGISAYTAMISAVKISQLGYSEPLMITLLTNFLTASSIVGALSIGLSIPGLWLYRKRPRV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11215-MONOMER" "putative succinate exporter YjjB" ["YjjB"] "MGVIEFLLALAQDMILAAIPAVGFAMVFNVPVRALRWCALLGSIGHGSRMILMTSGLNIEWSTFMASMLVGTIGIQWSRWYLAHPKVFTVAAVIPMFPGISAYTAMISAVKISQLGYSEPLMITLLTNFLTASSIVGALSIGLSIPGLWLYRKRPRV" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11217-MONOMER" "PF05981 family protein CreA" ["YjjD", "CreA", "conserved protein CreA"] "MKYKHLILSLSLIMLGPLAHAEEIGSVDTVFKMIGPDHKIVVEAFDDPDVKNVTCYVSRAKTGGIKGGLGLAEDTSDAAISCQQVGPIELSDRIKNGKAQGEVVFKKRTSLVFKSLQVVRFYDAKRNALAYLAYSDKVVEGSPKNAISAVPVMPWRQ" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11219-MONOMER" "protein YdcA" ["YdcA"] "MKKLALILFMGTLVSFYADAGRKPCSGSKGGISHCTAGGKFVCNDGSISASKKTCTN" [] ["CCO-MEMBRANE"] 0 [] {} 0 "EG11222-MONOMER" "DNA-3-methyladenine glycosylase 2" ["AidA", "AlkA", "3-methyl-adenine DNA glycosylase II, inducible"] "MYTLNWQPPYDWSWMLGFLAARAVSSVETVADSYYARSLAVGEYRGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGRLGAARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFPGMTPAQIRRYAERWKPWRSYALLHIWYTEGWQPDEA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -914,13 +914,13 @@ "EG11254-MONOMER" "23S rRNA m3Ψ1915 methyltransferase" ["YbeA", "RlmH"] "MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11255-MONOMER" "ribosomal silencing factor RsfS" ["RsfS", "RsfA", "YbeB"] "MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVVQESRAAGLLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11256-MONOMER" "anti-adaptor protein IraP" ["YaiB", "IraP", "anti-adaptor protein for σS stabilization"] "MKNLIAELLFKLAQKEEESKELCAQVEALEIIVTAMLRNMAQNDQQRLIDQVEGALYEVKPDASIPDDDTELLRDYVKKLLKHPRQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11257-MONOMER" "diguanylate cyclase DgcC" ["DgcC", "AdrA", "YaiC"] "MFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLPRAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNLKTDAVLAGMWVGVMGVNVLPSTAMLMIMCLNLMGAGGPRLFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRLPNTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 1 +"EG11257-MONOMER" "diguanylate cyclase DgcC" ["DgcC", "AdrA", "YaiC"] "MFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLPRAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNLKTDAVLAGMWVGVMGVNVLPSTAMLMIMCLNLMGAGGPRLFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRLPNTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA" [] ["CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 1 "EG11259-MONOMER" "RNase R" ["YjeC", "Rnr", "VacB"] "MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "EG11260-MONOMER" "putative magnesium chelatase YifB" ["YifB", "putative ATP-dependent protease"] "MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGRYDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHLQAVCAFLEGKHALERPKPTDAVSRALQHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEGTLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSYRAIDRLLIHLQKLLT" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11261-MONOMER" "NADPH-dependent nitro/quinone reductase NfsA" ["YbjB", "NfsA", "MdaA"] "MTPTIELICGHRSIRHFTDEPISEAQREAIINSARATSSSSFLQCSSIIRITDKALREELVTLTGGQKHVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLLLGVVDTAMMAQNALIAAESLGLGGVYIGGLRNNIEAVTKLLKLPQHVLPLFGLCLGWPADNPDLKPRLPASILVHENSYQPLDKGALAQYDEQLAEYYLTRGSNNRRDTWSDHIRRTIIKESRPFILDYLHKQGWATR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"EG11263-MONOMER" "type II secretion system protein GspB" ["GspB", "PioO", "PinO", "calcium-binding protein required for initiation of chromosome replication"] "MFEFYIAAREQKETGHPGIFSRQKHSTIIYVICLLLICLWFAGMVLVGGYARQLWVLWIVKAEVTVEAETPAFKQSTQHYFFKKQPLPVVESVEEEDDPGVAVENAPSSSEDEENTVEESEEKAGLRERVKNALNELER" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 +"EG11263-MONOMER" "cryptic type II secretion system protein GspB" ["GspB", "PioO", "PinO", "calcium-binding protein required for initiation of chromosome replication"] "MFEFYIAAREQKETGHPGIFSRQKHSTIIYVICLLLICLWFAGMVLVGGYARQLWVLWIVKAEVTVEAETPAFKQSTQHYFFKKQPLPVVESVEEEDDPGVAVENAPSSSEDEENTVEESEEKAGLRERVKNALNELER" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "EG11266-MONOMER" null ["YibD", "WaaH"] "MMNSTNKLSVIIPLYNAGDDFRTCMESLITQTWTALEIIIINDGSTDNSVEIAKYYAENYPHVRLLHQANAGASVARNRGIEVATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQCNADWCFRETGETWQSIPTDRLRSTGVLTGPDWLRMGLSSRRWTHVVWMGVYRRDVIVKNNIKFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLHRQGNKNLNYQRHYIKITRLLEKLNRNYADKIMIYPEFHQQITYEALRVCHAVRKEPDILTRQRMIAEIFTSGMYKRLITNVRSVKVGYQALLWSFRLWQWRDKTRSHHRITRSAFNLR" ["CCO-MEMBRANE"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11267-MONOMER" "PF05360 family inner membrane protein YiaB" ["YiaB"] "MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLDDFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRSA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11267-MONOMER" "PF05360 family inner membrane protein YiaB" ["YiaB"] "MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLDDFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRSA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11268-MONOMER" "10-formyltetrahydrofolate:L-methionyl-tRNAfMet N-formyltransferase" ["Ftm", "YhdD", "Fmt"] "MSESLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWSLSAAQLERCIRAFNPWPMSWLEIEGQPVKVWKASVIDTATNAAPGTILEANKQGIQVATGDGILNLLSLQPAGKKAMSAQDLLNSRREWFVPGNRLV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "EG11269-MONOMER" "his operon leader peptide" ["HisL"] "MTRVQFKHHHHHHHPD" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11270-MONOMER" "ilvXGMEDA operon leader peptide" ["IlvL"] "MTALLRVISLVVISVVVIIIPPCGAALGRGKA" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -937,15 +937,15 @@ "EG11287-MONOMER" "protein YgbA" ["YgbA"] "MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKRLDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRPVPELPEKYRPKKPHE" [] [] 0 [] {} 0 "EG11288-MONOMER" "fructokinase" ["Mak", "YajF", "manno(fructo)kinase", "fructo(manno)kinase"] "MRIGIDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIATLVDMAEQATGQRGTVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRLANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVAFNGRAHIGGNGTAGEWGHNPLPWMDEDELRYREEVPCYCGKQGCIETFISGTGFAMDYRRLSGHALKGSEIIRLVEESDPVAELALRRYELRLAKSLAHVVNILDPDVIVLGGGMSNVDRLYQTVGQLIKQFVFGGECETPVRKAKHGDSSGVRGAAWLWPQE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11289-MONOMER" "dihydropyrimidine dehydrogenase (NAD+) subunit PreA" ["PreA", "YeiA"] "MLTKDLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGVVFKTIGFFIANEVSPRFDHLVKEDTGFIGFKNMEQIAEHPLEENLAALRRLKEDYPDKVLIASIMGENEQQWEELARLVQEAGADMIECNFSCPQMTSHAMGSDVGQSPELVEKYCRAVKRGSTLPMLAKMTPNIGDMCEVALAAKRGGADGIAAINTVKSITNIDLNQKIGMPIVNGKSSISGYSGKAVKPIALRFIQQMRTHPELRDFPISGIGGIETWEDAAEFLLLGAATLQVTTGIMQYGYRIVEDMASGLSHYLADQGFDSLQEMVGLANNNIVPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDGGHQAMEWSEKTRTPHCNTEKCVGCLLCGHVCPVGCIELGEVKFKKGEKEHPVTL" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 2} 1 -"EG11290-MONOMER" "DUF418 domain-containing protein YeiB" ["YeiB"] "MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAITPRDAWTWAFLDLIGQVKFLTLFALLFGAGLQMLLPRGRRWIQSRLTLLVLLGFIHGLLFWDGDILLAYGLVGLICWRLVRDAPSVKSLFNTGVMLYLVGLGVLLLLGLISDSQTSRAWTPDASAILYEKYWKLHGGVEAISNRADGVGNSLLALGAQYGWQLAGMMLIGAALMRSGWLKGQFSLRHYRRTGFVLVAIGVTINLPAIALQWQLDWAYRWCAFLLQMPRELSAPFQAIGYASLFYGFWPQLSRFKLVLAIACVGRMALTNYLLQTLICTTLFYHLGLFMHFDRLELLAFVIPVWLANILFSVIWLRYFRQGPVEWLWRQLTLRAAGPAISKTSR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11290-MONOMER" "DUF418 domain-containing protein YeiB" ["YeiB"] "MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAITPRDAWTWAFLDLIGQVKFLTLFALLFGAGLQMLLPRGRRWIQSRLTLLVLLGFIHGLLFWDGDILLAYGLVGLICWRLVRDAPSVKSLFNTGVMLYLVGLGVLLLLGLISDSQTSRAWTPDASAILYEKYWKLHGGVEAISNRADGVGNSLLALGAQYGWQLAGMMLIGAALMRSGWLKGQFSLRHYRRTGFVLVAIGVTINLPAIALQWQLDWAYRWCAFLLQMPRELSAPFQAIGYASLFYGFWPQLSRFKLVLAIACVGRMALTNYLLQTLICTTLFYHLGLFMHFDRLELLAFVIPVWLANILFSVIWLRYFRQGPVEWLWRQLTLRAAGPAISKTSR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11291-MONOMER" "metalloprotease LoiP" ["LoiP", "YggG"] "MKIRALLVAMSVATVLTGCQNMDSNGLLSSGAEAFQAYSLSDAQVKTLSDQACQEMDSKATIAPANSEYAKRLTTIANALGNNINGQPVNYKVYMAKDVNAFAMANGCIRVYSGLMDMMTDNEVEAVIGHEMGHVALGHVKKGMQVALGTNAVRVAAASAGGIVGSLSQSQLGNLGEKLVNSQFSQRQEAEADDYSYDLLRQRGISPAGLATSFEKLAKLEEGRQSSMFDDHPASAERAQHIRDRMSADGIK" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM", "CCO-MEMBRANE"] 0 [] {"ZN+2": 1} 0 "EG11292-MONOMER" "NADP+-dependent aldehyde reductase" ["YghA"] "MSHLKDPTTQYYTGEYPKQKQPTPGIQAKMTPVPDCGEKTYVGSGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGEHLG" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11293-MONOMER" "outer membrane lipoprotein LolB" ["YchC", "LolB", "HemM"] "MPLPDFRLIRLLPLAALVLTACSVTTPKGPGKSPDSPQWRQHQQDVRNLNQYQTRGAFAYISDQQKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGNVQLVDNKGQRYTADDAEEMIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEITYSQNGKNWKVVYGGYDTKTQPAMPANMELTDGGQRIKLKMDNWIVK" ["CCO-PERI-BAC"] ["CCO-OUTER-MEM", "CCO-MEMBRANE"] 0 [] {} 0 +"EG11293-MONOMER" "outer membrane lipoprotein LolB" ["YchC", "LolB", "HemM"] "MPLPDFRLIRLLPLAALVLTACSVTTPKGPGKSPDSPQWRQHQQDVRNLNQYQTRGAFAYISDQQKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGNVQLVDNKGQRYTADDAEEMIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEITYSQNGKNWKVVYGGYDTKTQPAMPANMELTDGGQRIKLKMDNWIVK" ["CCO-PERI-BAC"] ["CCO-OUTER-MEM"] 0 [] {} 0 "EG11294-MONOMER" "4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase" ["Ipk", "YchB", "IspE"] "MRTQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGDIRLLTPVEGVEHEDNLIVRAARLLMKTAADSGRLPTGSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGHAAFAEGVGEILTPVDPPEKWYLVAHPGVSIPTPVIFKDPELPRNTPKRSIETLLKCEFSNDCEVIARKRFREVDAVLSWLLEYAPSRLTGTGACVFAEFDTESEARQVLEQAPEWLNGFVAKGANLSPLHRAML" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11295-MONOMER" "enterobacterial common antigen polysaccharide co-polymerase" ["Wzz", "YifC", "WzzE"] "MTQPMPGKPAEDAENELDIRGLFRTLWAGKLWIIGMGLAFALIALAYTFFARQEWSSTAITDRPTVNMLGGYYSQQQFLRNLDVRSNMASADQPSVMDEAYKEFVMQLASWDTRREFWLQTDYYKQRMVGNSKADAALLDEMINNIQFIPGDFTRAVNDSVKLIAETAPDANNLLRQYVAFASQRAASHLNDELKGAWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQALKIAEQHNISRSATDVPAEELPDSEMFLLGRPMLQARLENLQAVGPAFDLDYDQNRAMLNTLNVGPTLDPRFQTYRYLRTPEEPVKRDSPRRAFLMIMWGIVGGLIGAGVALTRRCSK" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 "EG11296-MONOMER" "DNA recombination protein" ["RadA", "Sms"] "MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "EG11298-MONOMER" "nucleoside triphosphate pyrophosphatase YhdE" ["YhdE"] "MTSLYLASGSPRRQELLAQLGVTFERIVTGIEEQRQPQESAQQYVVRLAREKARAGVAQTAKDLPVLGADTIVILNGEVLEKPRDAEHAAQMLRKLSGQTHQVMTAVALADSQHILDCLVVTDVTFRTLTDEDIAGYVASDEPLDKAGAYGIQGLGGCFVRKINGSYHAVVGLPLVETYELLSNFNALREKRDKHDG" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"EG11299-MONOMER" "RNase G" ["AdhR", "Rng", "YhdF", "CafA"] "MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVMM" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSKELETON", "CCO-CYTOSOL"] 1 [] {"MG+2": 1} 1 +"EG11299-MONOMER" "RNase G" ["AdhR", "Rng", "YhdF", "CafA"] "MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVMM" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSKELETON", "CCO-CYTOSOL"] 1 [] {"MG+2": 1} 1 "EG11300-MONOMER" "Qin prophage; DUF1391 domain-containing protein YdfA" ["YdfA"] "MDTIDLGNNESLVYGVFPNQDGTFTAMTYTKSKTFKTENGARRWLERNSGE" [] [] 0 [] {} 0 "EG11301-MONOMER" "Qin prophage; uncharacterized protein YdfB" ["YdfB"] "MDFDTIMEKAYEEYFEGLAEGEEALSFSEFKQALSSSAKSNG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11302-MONOMER" "Qin prophage; uncharacterized protein YdfC" ["YdfC"] "MQKREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAENLSALEQDITNLEKAAALSIARMITYPR" [] [] 0 [] {} 0 @@ -964,29 +964,29 @@ "EG11334-MONOMER" "DNA ligase B" ["LigB", "YicF"] "MKVWMAILIGILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPRDVMMPPLNGAVMHPVAHTGVRKMVDKNALSLWMRERSDLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANSTLQGEIFLQREGHIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAELPFVTDGVVVRAAKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFEP" [] [] 0 [] {} 0 "EG11336-MONOMER" "DNA-specific endonuclease I" ["EndA"] "MYRYLSIAAVVLSAAFSGPALAEGINSFSQAKAAAVKVHADAPGTFYCGCKINWQGKKGVVDLQSCGYQVRKNENRASRVEWEHVVPAWQFGHQRQCWQDGGRKNCAKDPVYRKMESDMHNLQPSVGEVNGDRGNFMYSQWNGGEGQYGQCAMKVDFKEKAAEPPARARGAIARTYFYMRDQYNLTLSRQQTQLFNAWNKMYPVTDWECERDERIAKVQGNHNPYVQRACQARKS" [] ["CCO-PERI-BAC"] 0 [] {} 0 "EG11338-MONOMER" "acidic protein MsyB" ["MsyB", "acidic protein that suppresses heat sensitivity of a secY mutant"] "MTMYATLEEAIDAAREEFLADNPGIDAEDANVQQFNAQKYVLQDGDIMWQVEFFADEGEEGECLPMLSGEAAQSVFDGDYDEIEIRQEWQEENTLHEWDEGEFQLEPPLDTEEGRAAADEWDER" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11339-MONOMER" "lipopolysaccharide glucosyltransferase I" ["WaaG", "RfaG"] "MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGGLDG" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 +"EG11339-MONOMER" "lipopolysaccharide glucosyltransferase I" ["WaaG", "RfaG"] "MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGGLDG" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "EG11340-MONOMER" "lipopolysaccharide core heptose (I) kinase" ["WaaP", "RfaP", "L-glycero-D-manno-heptose (I) kinase"] "MVELKEPLATLWRGKDAFAEVKKLNGEVFRELETRRTLRFELSGKSYFLKWHKGTTLKEIIKNLLSLRMPVLGADREWHAIHRLSDVGVDTMKGIGFGEKGLNPLTRASFIITEDLTPTISLEDYCADWAVNPPDIRVKRMLIARVATMVRKMHTAGINHRDCYICHFLLHLPFTGREDELKISVIDLHRAQIRAKVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFGMPLRKILSLEQNLLNMASVKAERIKERTQRKGL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11341-MONOMER" "lipopolysaccharide core heptosyltransferase 3" ["WaaQ", "RfaQ", "HepIII", "lipopolysaccharide core heptosyltransferase III"] "MRYHGDMLLTTPVISTLKQNYPDAKIDMLLYQDTIPILSENPEINALYGISNKGAGTFDKIKNVLSLIKTLRANNYDLVINLTDQWMVALLVRCLPARMKISQLYGHRQHGIWKKSFTHLAPIHGTHIVERNLSVLEPLGITDFYTDTTMSYAEDCWKKMRRELDALGVKDHYVVIQPTARQIFKCWDNDKFSKVIDALQQRGYQVVLTCGPSADDLACVDEIARGCETKPITGLAGKTRFPELGALIDHAVLFIGVDSAPGHIAAAVKTPVISLFGATDHVFWRPWTENIIQFWAGNYQKMPTRHELDRNKKYLSVIPAEDVIAATEKLLPEDAPSADRNAQL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11342-MONOMER" "MarC family putative inner membrane protein YchE" ["YchE"] "MIQTFFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTAAARNKTNLTANLSVAIILWISLFLGDTILQLFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSISYLFGFFVAIALFALCCWGLFRMAPWLVRVLRQTGINVITRIMGLLLMALGIEFIVTGIKGIFPGLLN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11344-MONOMER" "tRNA-specific 2-thiouridylase" ["YcfB", "AsuE", "TrmU", "MnmA"] "MSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVDREPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNGEVCLGGGIIEQRLPLPV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11345-MONOMER" "lysogenization regulator" ["HslZ", "HflD", "YcfC"] "MAKNYYDITLALAGICQSARLVQQLAHQGHCDADALHVSLNSIIDMNPSSTLAVFGGSEANLRVGLETLLGVLNASSRQGLNAELTRYTLSLMVLERKLSSAKGALDTLGNRINGLQRQLEHFDLQSETLMSAMAAIYVDVISPLGPRIQVTGSPAVLQSPQVQAKVRATLLAGIRAAVLWHQVGGGRLQLMFSRNRLTTQAKQILAHLTPEL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11345-MONOMER" "lysogenization regulator" ["HslZ", "HflD", "YcfC"] "MAKNYYDITLALAGICQSARLVQQLAHQGHCDADALHVSLNSIIDMNPSSTLAVFGGSEANLRVGLETLLGVLNASSRQGLNAELTRYTLSLMVLERKLSSAKGALDTLGNRINGLQRQLEHFDLQSETLMSAMAAIYVDVISPLGPRIQVTGSPAVLQSPQVQAKVRATLLAGIRAAVLWHQVGGGRLQLMFSRNRLTTQAKQILAHLTPEL" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11346-MONOMER" "flagellar protein FliE" ["Fla", "FlaN", "FliE"] "MSAIQGIEGVISQLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV" [] ["CCO-PERI-BAC", "CCO-CELL-PROJECTION"] 1 [] {} 1 "EG11350-MONOMER" "lipopolysaccharide core biosynthesis protein WaaS" ["WaaS", "RfaS"] "MTIYFINWVADYELKMIQYLKKKYKIKNITTPKKYNWINKKISKIGMDNAWLGRLFIKHYLNDIKKDDIIIINDSVVNKGINKQILKNINCHKVLLLRNTVGEDFILDNANYFDIIYDFEHRFIGNEKIKAIEQFFPIGMDEIRNYSLSDKNNSQPICFFLGRDKGRLQIINELAERLTTLGCKLDFNVVKDKTSSTTSKYLIEKQISYEENIRRTLNANIIVDITKENQSGWTLRILEALFFNKKLITNNINVFGSEIYSESRFFIIGHDDWDKLEYFINSSVKPMDYDSLYKFSPDKMMSTIVSDFIDK" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11351-MONOMER" "UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase" ["Syn", "Lps", "WaaB", "RfaB"] "MKIAFIGEAVSGFGGMETVIRDVITTFRQQHIQSEMFFFCRNDKMDKGWLEGIKYSCSFSNIRLGFLRRAKHIHALSKWLQEYQPDIVICIDVISCLFAAKARKKSGIDMPVFSWPHFSLDHKKHAEYITCADYHLAISSGIKQQMINRGVAESTINVIFNPVETKDSVIPAPEEGETATFIYVGRMKFEGQKRVKDLLDGLSQAKGNWKLHVLGDGSDFEKCQAYGRELNIDDRIVWYGWQQYPWELVQQDIEKVSALLLTSSFEGFPMTLLEALSWGIPCISADCVSGPADIIQPDVNGHLYQPGDIAGFVTLLNKYIAGEIHIEHEKIPASIDEFYQSKYYDRLHKVIISAISRRK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11352-MONOMER" "UDP-D-glucose:(glucosyl)LPS α-1,3-glucosyltransferase" ["WaaO", "WaaI", "RfaI"] "MQQVFFQETEFLNSVIDYDHKVETENLCLDIAYGTDKNFLFGCGISIASILKYNEGSRLCFHIFTDYFGDDDRKYFDALALQYKTRIKIYLINGDRLRSLPSTKNWTHAIYFRFVIADYFINKAPKVLYLDADIICQGTIEPLINFSFPDDKVAMVVTEGQADWWEKRAHSLGVAGIAKGYFNSGFLLINTAQWAAQQVSARAIAMLNEPEIIKKITHPDQDVLNMLLADKLIFADIKYNTQFSLNYQLKESFINPVTNDTIFIHYIGPTKPWHDWAWDYPVSQAFMEAKNASPWKNTALLKPNNSNQLRYSAKHMLKKHRYLKGFSNYLFYFIEKIKH" [] ["CCO-CYTOSOL"] 0 [] {"MN+2": 1} 0 -"EG11353-MONOMER" "UDP-glucose:(glucosyl)LPS α-1,2-glucosyltransferase" ["WaaR", "WaaJ", "RfaJ", "UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase"] "MDSFPAIEIDKVKAWDFRLANINTSECLNVAYGVDANYLDGVGVSITSIVLNNRHINLDFYIIADVYNDGFFQKIAKLAEQNQLRITLYRINTDKLQCLPCTQVWSRAMYFRLFAFQLLGLTLDRLLYLDADVVCKGDISQLLHLGLNGAVAAVVKDVEPMQEKAVSRLSDPELLGQYFNSGVVYLDLKKWADAKLTEKALSILMSKDNVYKYPDQDVMNVLLKGMTLFLPREYNTIYTIKSELKDKTHQNYKKLITESTLLIHYTGATKPWHKWAIYPSVKYYKIALENSPWKDDSPRDAKSIIEFKKRYKHLLVQHHYISGIIAGVCYLCRKYYRK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"MN+2": 1} 0 -"EG11354-MONOMER" "multidrug efflux pump membrane fusion protein EmrA" ["EmrA"] "MSANAETQTPQQPVKKSGKRKRLLLLLTLLFIIIAVAIGIYWFLVLRHFEETDDAYVAGNQIQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDARQAFEKAKTALASSVRQTHQLMINSKQLQANIEVQKIALAKAQSDYNRRVPLGNANLIGREELQHARDAVTSAQAQLDVAIQQYNANQAMILGTKLEDQPAVQQAATEVRNAWLALERTRIISPMTGYVSRRAVQPGAQISPTTPLMAVVPATNMWVDANFKETQIANMRIGQPVTITTDIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIELDQKQLEQYPLRIGLSTLVSVNTTNRDGQVLANKVRSTPVAVSTAREISLAPVNKLIDDIVKANAG" ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 1 +"EG11353-MONOMER" "UDP-glucose:(glucosyl)LPS α-1,2-glucosyltransferase" ["WaaR", "WaaJ", "RfaJ", "UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase"] "MDSFPAIEIDKVKAWDFRLANINTSECLNVAYGVDANYLDGVGVSITSIVLNNRHINLDFYIIADVYNDGFFQKIAKLAEQNQLRITLYRINTDKLQCLPCTQVWSRAMYFRLFAFQLLGLTLDRLLYLDADVVCKGDISQLLHLGLNGAVAAVVKDVEPMQEKAVSRLSDPELLGQYFNSGVVYLDLKKWADAKLTEKALSILMSKDNVYKYPDQDVMNVLLKGMTLFLPREYNTIYTIKSELKDKTHQNYKKLITESTLLIHYTGATKPWHKWAIYPSVKYYKIALENSPWKDDSPRDAKSIIEFKKRYKHLLVQHHYISGIIAGVCYLCRKYYRK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"MN+2": 1} 0 +"EG11354-MONOMER" "multidrug efflux pump membrane fusion protein EmrA" ["EmrA"] "MSANAETQTPQQPVKKSGKRKRLLLLLTLLFIIIAVAIGIYWFLVLRHFEETDDAYVAGNQIQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDARQAFEKAKTALASSVRQTHQLMINSKQLQANIEVQKIALAKAQSDYNRRVPLGNANLIGREELQHARDAVTSAQAQLDVAIQQYNANQAMILGTKLEDQPAVQQAATEVRNAWLALERTRIISPMTGYVSRRAVQPGAQISPTTPLMAVVPATNMWVDANFKETQIANMRIGQPVTITTDIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIELDQKQLEQYPLRIGLSTLVSVNTTNRDGQVLANKVRSTPVAVSTAREISLAPVNKLIDDIVKANAG" ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 1 "EG11355-MONOMER" "RNA polymerase sigma factor FliA" ["RpoF", "FlaD", "FliA", "sigma F factor", "sigma 28 factor", "σ28", "RNA polymerase, sigma 28 (sigma F) factor"] "MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11356-MONOMER" "DNA-binding transcriptional regulator FliZ" ["YedH", "FliZ"] "MMVQHLKRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENGWQTEQKSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNHLHEQNISLDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQHYQRQTCTRLVQKSSSLPSSDIY" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11357-MONOMER" "ATP-dependent DNA helicase DinG" ["RarB", "DinG"] "MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 0 -"EG11359-MONOMER" "type II secretion system prepilin peptidase" ["YheC", "HopO", "HopD", "GspO", "HofD"] "MTMLLPLFILVGFIADYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGALFLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11359-MONOMER" "cryptic type II secretion system prepilin peptidase" ["YheC", "HopO", "HopD", "GspO", "HofD"] "MTMLLPLFILVGFIADYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGALFLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11360-MONOMER" "putative glycoside hydrolase Bax" ["Bax"] "MILTPIRRYGAMILMLLTLVFSSEVLAKTHTTTASQKSHLTKASNKQVSSKQEYSRNSAKSSSLPDLRKYPSGTPRKKAFLRTVMPYITSQNAAITAERNWLISKQYQGQWSPAERARLKDIAKRYKVKWSGNTRKIPWNTLLERVDIIPTSMVATMAAAESGWGTSKLARNNNNLFGMKCMKGRCTNAPGKVKGYSQFSSVKESVSAYVTNLNTHPAYSSFRKSRAQLRKADQEVTATAMIHKLKGYSTKGKSYNNYLFAMYQDNQRLIAAHM" [] [] 0 [] {} 0 "EG11361-MONOMER" "putative assembly protein AsmA" ["YegA", "AsmA"] "MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRDYMVKQVAARSGYQLQLDGPLRWHVWPQLSILSGRMSLTAQGASQPLVRADNMRLDVALLPLLSHQLSVKQVMLKGAVIQLTPQTEAVRSEDAPVAPRDNTLPDLSDDRGWSFDISSLKVADSVLVFQHEDDEQVTIRNIRLQMEQDPQHRGSFEFSGRVNRDQRDLTISLNGTVDASDYPHDLTAAIEQINWQLQGADLPKQGIQGQGSFQAQWQESHKRLSFNQISLTANDSTLSGQAQVTLTEKPEWQLRLQFPQLNLDNLIPLNETANGENGAAQQGQSQSTLPRPVISSRIDEPAYQGLQGFTADILLQASNVRWRGMNFTDVATQMTNKSGLLEITQLQGKLNGGQVSLPGTLDATSINPRINFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSGADIDADAFRHNWQGQAHVEMTDTRMEGMNFQQMIQQAVERNGGDVKAAENFDNVTRLDRFTTDLTLKDGVVTLNDMQGQSPVLALTGEGMLNLADQTCDTQFDIRVVGGWNGESKLIDFLKETPVPLRVYGNWQQLNYSLQVDQLLRKHLQDEAKRRLNDWAERNKDSRNGKDVKKLLEKM" ["CCO-PM-BAC-NEG"] ["CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11362-MONOMER" "glutamyl-Q tRNAAsp synthetase" ["GluQ", "YadB"] "MLPPYFLFKEMTDTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLSKQNHAPALPKGDPRPVLIAALQFLGQQAEAHWQDFSVEQILQSAVKNWRLTAVPESAIVNSTFSNASC" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 -"EG11364-MONOMER" "carbohydrate-specific outer membrane porin, cryptic" ["YieC", "BglH"] "MFRRNLITSAILLMAPLAFSAQSLAESLTVEQRLELLEKALRETQSELKKYKDEEKKKYTPATVNRSVSTNDQGYAANPFPTSSAAKPDAVLVKNEEKNASETGSIYSSMTLKDFSKFVKDEIGFSYNGYYRSGWGTASHGSPKSWAIGSLGRFGNEYSGWFDLQLKQRVYNENGKRVDAVVMMDGNVGQQYSTGWFGDNAGGENYMQFSDMYVTTKGFLPFAPEADFWVGKHGAPKIEIQMLDWKTQRTDAAAGVGLENWKVGPGKIDIALVREDVDDYDRSLQNKQQINTNTIDLRYKDIPLWDKATLMVSGRYVTANESASEKDNQDNNGYYDWKDTWMFGTSLTQKFDKGGFNEFSFLVANNSIASNFGRYAGASPFTTFNGRYYGDHTGGTAVRLTSQGEAYIGDHFIVANAIVYSFGNDIYSYETGAHSDFESIRAVVRPAYIWDQYNQTGVELGYFTQQNKDANSNKFNESGYKTTLFHTFKVNTSMLTSRPEIRFYATYIKALENELDGFTFEDNKDDQFAVGAQAEIWW" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 -"EG11371-MONOMER" "phosphatidylglycerophosphatase C" ["PgpC", "YfhB", "PGPC-ase"] "MATHERRVVFFDLDGTLHQQDMFGSFLRYLLRRQPLNALLVLPLLPIIAIALLIKGRAARWPMSLLLWGCTFGHSEARLQTLQADFVRWFRDNVTAFPLVQERLTTYLLSSDADIWLITGSPQPLVEAVYFDTPWLPRVNLIASQIQRGYGGWVLTMRCLGHEKVAQLERKIGTPLRLYSGYSDSNQDNPLLYFCQHRWRVTPRGELQQLE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11364-MONOMER" "cryptic carbohydrate-specific outer membrane porin" ["YieC", "BglH"] "MFRRNLITSAILLMAPLAFSAQSLAESLTVEQRLELLEKALRETQSELKKYKDEEKKKYTPATVNRSVSTNDQGYAANPFPTSSAAKPDAVLVKNEEKNASETGSIYSSMTLKDFSKFVKDEIGFSYNGYYRSGWGTASHGSPKSWAIGSLGRFGNEYSGWFDLQLKQRVYNENGKRVDAVVMMDGNVGQQYSTGWFGDNAGGENYMQFSDMYVTTKGFLPFAPEADFWVGKHGAPKIEIQMLDWKTQRTDAAAGVGLENWKVGPGKIDIALVREDVDDYDRSLQNKQQINTNTIDLRYKDIPLWDKATLMVSGRYVTANESASEKDNQDNNGYYDWKDTWMFGTSLTQKFDKGGFNEFSFLVANNSIASNFGRYAGASPFTTFNGRYYGDHTGGTAVRLTSQGEAYIGDHFIVANAIVYSFGNDIYSYETGAHSDFESIRAVVRPAYIWDQYNQTGVELGYFTQQNKDANSNKFNESGYKTTLFHTFKVNTSMLTSRPEIRFYATYIKALENELDGFTFEDNKDDQFAVGAQAEIWW" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"EG11371-MONOMER" "phosphatidylglycerophosphatase C" ["PgpC", "YfhB", "PGPC-ase"] "MATHERRVVFFDLDGTLHQQDMFGSFLRYLLRRQPLNALLVLPLLPIIAIALLIKGRAARWPMSLLLWGCTFGHSEARLQTLQADFVRWFRDNVTAFPLVQERLTTYLLSSDADIWLITGSPQPLVEAVYFDTPWLPRVNLIASQIQRGYGGWVLTMRCLGHEKVAQLERKIGTPLRLYSGYSDSNQDNPLLYFCQHRWRVTPRGELQQLE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11372-MONOMER" "tRNA adenosine34 deaminase" ["TadA", "YfhC", "tRNA-specific adenosine deaminase"] "MSEVEFSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 -"EG11373-MONOMER" "membrane-bound lytic murein transglycosylase F" ["YfhD", "MltF"] "MKKLKINYLFIGILALLLAVALWPSIPWFGKADNRIAAIQARGELRVSTIHTPLTYNEINGKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNADLLAAGLVYNSERVKNYQPGPTYYSVSQQLVYKVGQYRPRTLGNLTAEQLTVAPGHVVVNDLQTLKETKFPELSWKVDDKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELAVALDITDEQPVTWFSPLDGDNTLSAALLDFFNEMNEDGTLARIEEKYLGHGDDFDYVDTRTFLRAVDAVLPQLKPLFEKYAEEIDWRLLAAIAYQESHWDAQATSPTGVRGMMMLTKNTAQSLGITDRTDAEQSISGGVRYLQDMMSKVPESVPENERIWFALAAYNMGYAHMLDARALTAKTKGNPDSWADVKQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQISLVGYLQEKEKQATEAAMQLAQDYPAVSPTELGKEKFPFLSFLSQSSSNYLTHSPSLLFSRKGSEEKQN" ["CCO-OUTER-MEM"] ["CCO-CE-BAC", "CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-OUTER-MEM"] 0 [] {} 0 +"EG11373-MONOMER" "membrane-bound lytic murein transglycosylase F" ["YfhD", "MltF"] "MKKLKINYLFIGILALLLAVALWPSIPWFGKADNRIAAIQARGELRVSTIHTPLTYNEINGKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNADLLAAGLVYNSERVKNYQPGPTYYSVSQQLVYKVGQYRPRTLGNLTAEQLTVAPGHVVVNDLQTLKETKFPELSWKVDDKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELAVALDITDEQPVTWFSPLDGDNTLSAALLDFFNEMNEDGTLARIEEKYLGHGDDFDYVDTRTFLRAVDAVLPQLKPLFEKYAEEIDWRLLAAIAYQESHWDAQATSPTGVRGMMMLTKNTAQSLGITDRTDAEQSISGGVRYLQDMMSKVPESVPENERIWFALAAYNMGYAHMLDARALTAKTKGNPDSWADVKQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQISLVGYLQEKEKQATEAAMQLAQDYPAVSPTELGKEKFPFLSFLSQSSSNYLTHSPSLLFSRKGSEEKQN" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-OUTER-MEM"] 0 [] {} 0 "EG11376-MONOMER" "cell division protein FtsP" ["Sui", "SufI", "FtsP", "cell division protein required during stress conditions"] "MSLSRRQFIQASGIALCAGAVPLKASAAGQQQPLPVPPLLESRRGQPLFMTVQRAHWSFTPGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMTVAGLQVPGPLMGGPARMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGVQSPYVEVSRGWVRLRLLNASNSRRYQLQMNDGRPLHVISGDQGFLPAPVSVKQLSLAPGERREILVDMSNGDEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPLVTDSLPMRLLPTEIMAGSPIRSRDISLGDDPGINGQLWDVNRIDVTAQQGTWERWTVRADEPQAFHIEGVMFQIRNVNGAMPFPEDRGWKDTVWVDGQVELLVYFGQPSWAHFPFYFNSQTLEMADRGSIGQLLVNPVP" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 "EG11378-MONOMER" "iron-sulfur cluster insertion protein SufA" ["YdiC", "SufA", "Fe-S transport protein in Fe-S cluster assembly"] "MDMHSGTFNPQDFAWQGLTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESFGV" [] ["CCO-CYTOSOL"] 0 [] {"CPD-6": 1} 1 "EG11381-MONOMER" "surface composition regulator" ["ScoR", "GlgS"] "MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQARELELEH" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -997,10 +997,10 @@ "EG11388-MONOMER" "flagellar biosynthesis protein FliS" ["FliS"] "MYAAKGTQAYAQIGVESAVMSASQQQLVTMLFDGVLSALVRASLFMQDNNQQGKGVSLSKAINIIENGLRVSLDEESKDELTQNLIALYSYMVRRLLQANLRNDVSAVEEVEALMRNIADAWKESLLSPSLIQDPV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11389-MONOMER" "flagellar biosynthesis protein FliT" ["FliT"] "MNHAPHLYFAWQQLVEKSQLMLRLATEEQWDELIASEMAYVNAVQEIAHLTEEVDPSTTMQEQLRPMLRLILDNESKVKQLLQIRMDELAKLVGQSSVQKSVLSAYGDQGGFVLAPQDNLF" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11390-MONOMER" "universal stress protein A" ["UspA", "universal stress global stress response regulator"] "MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQDFWSKLMSSARQLINTVHVDMLIVPLRDEEE" ["CCO-MEMBRANE"] ["CCO-CYTOSOL"] 1 [] {} 1 -"EG11391-MONOMER" "periplasmic chaperone OsmY" ["OsmY"] "MTMTRLKISKTLLAVMLTSAVATGSAYAENNAQTTNESAGQKVDSSMNKVGNFMDDSAITAKVKAALVDHDNIKSTDISVKTDQKVVTLSGFVESQAQAEEAVKVAKGVEGVTSVSDKLHVRDAKEGSVKGYAGDTATTSEIKAKLLADDIVPSRHVKVETTDGVVQLSGTVDSQAQSDRAESIAKAVDGVKSVKNDLKTK" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 +"EG11391-MONOMER" "osmotically inducible protein Y" ["OsmY"] "MTMTRLKISKTLLAVMLTSAVATGSAYAENNAQTTNESAGQKVDSSMNKVGNFMDDSAITAKVKAALVDHDNIKSTDISVKTDQKVVTLSGFVESQAQAEEAVKVAKGVEGVTSVSDKLHVRDAKEGSVKGYAGDTATTSEIKAKLLADDIVPSRHVKVETTDGVVQLSGTVDSQAQSDRAESIAKAVDGVKSVKNDLKTK" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 "EG11394-MONOMER" "DNA-binding transcriptional repressor FabR" ["FabR", "YijC"] "MFILWYSASSTFGKDSDIVMGVRAQQKEKTRRSLVEAAFSQLSAERSFASLSLREVAREAGIAPTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLELENHMPRAFTEAQAEAMVTIVFSAGAEALDVGVEQRRQLEERLVLQLRMISKGAYYWYRREQEKTAIIPGNVKDE" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11395-MONOMER" "DUF1422 domain-containing inner membrane protein YijD" ["YijD"] "MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG11396-MONOMER" "3-octaprenyl-4-hydroxybenzoate decarboxylase" ["YigY", "YigC", "UbiD"] "MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFNNGKSA" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {"MN+2": 1} 1 +"EG11395-MONOMER" "DUF1422 domain-containing inner membrane protein YijD" ["YijD"] "MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11396-MONOMER" "3-octaprenyl-4-hydroxybenzoate decarboxylase" ["YigY", "YigC", "UbiD"] "MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFNNGKSA" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"MN+2": 1} 1 "EG11398-MONOMER" "periplasmic acid stress chaperone HdeA" ["YhhC", "YhiB", "HdeA", "HdeA monomer, chaperone active form"] "MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKKDM" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "EG11399-MONOMER" "periplasmic acid stress chaperone HdeB" ["YhhD", "YhiC", "HdeB", "10K-L protein"] "MNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHEETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQASNDLPN" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "EG11400-MONOMER" "inner membrane protein YhiD" ["YhhE", "YhiD"] "MTAEFIIRLILAAIACGAIGMERQMRGKGAGLRTHVLIGMGSALFMIVSKYGFADVLSLDHVGLDPSRIAAQVVTGVGFIGAGNILVRNQNIVGLTTAADIWVTAAIGMVIGSGMYELGIYGSVMTLLVLEVFHQLTFRLMNKNYHLQLTLVNGNTVSMLDWFKQQKIKTDLVSLQENEDHEVVAIDIQLHATTSIEDLLRLLKGMAGVKGVSIS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -1013,7 +1013,7 @@ "EG11415-MONOMER" "DNA protection during starvation protein" ["Vtm", "PexB", "Dps", "stationary phase nucleoid protein that sequesters iron and protects DNA from damage"] "MSTAKLVKSKATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE" ["CCO-MEMBRANE", "CCO-BAC-NUCLEOID"] ["CCO-CYTOSOL", "CCO-BAC-NUCLEOID"] 1 [] {"FE+2": 2} 1 "EG11422-MONOMER" "putative lipopolysaccharide kinase InaA" ["YfaG", "InaA", "pH-inducible protein involved in stress response"] "MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIYVKTEGNAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11423-MONOMER" "putative ADP-heptose:LPS heptosyltransferase 4" ["WaaU", "RfaK", "heptosyl transferase IV", "putative UDP-N-acetyl-D-glucosaminyl transferase", "ADP-L-glycero-β-D-manno-heptose:LPS heptosyltransferase IV"] "MRLGTFHKKKRFYINKIKINFLSFLFRNKINNQITDPAQVKSCLIIHDNNKLGDLIVLSSIYRELYSKGVKITLLTNRKGGEFLSNNKNIFEFCIKESTGFLEMLTLCKHLRDLQFDIVLDPFETMPSFKHSLILSSLKDSYILGFDHWYKRYYSFYHPHDECLKEHMSTRAIEILKHIYGEGKFSTNYDLHLPVDVEDKIKEFIGDTRIVIINPLGAKKICRLTFEQIKVIYQEVKTHFENYRIIFTGLPQDLLTIPILEIETLPFDEFIYTVALTKYSDFVISVDTALVHIAAAYHKPTLAFYPNSRTPEYPSHLIWSPNHHKSIQIVSPTYTVKDIDTETLTNSVKRLSCIDKK" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11424-MONOMER" "O-antigen ligase" ["WaaL", "RfaL", "M-antigen ligase", "surface polymer:lipid A-core ligase"] "MLTSFKLHSLKPYTLKSSMILEIITYILCFFSMIIAFVDNTFSIKIYNITAIVCLLSLILRGRQENYNIKNLILPLSIFLIGLLDLIWYSAFKVDNSPFRATYHSYLNTAKIFIFGSFIVFLTLTSQLKSKKESVLYTLYSLSFLIAGYAMYINSIHENDRISFGVGTATGAAYSTMLIGIVSGVAILYTKKNHPFLFLLNSCAVLYVLALTQTRATLLLFPIICVAALIAYYNKSPKKFTSSIVLLIAILASIVIIFNKPIQNRYNEALNDLNSYTNANSVTSLGARLAMYEIGLNIFIKSPFSFRSAESRAESMNLLVAEHNRLRGALEFSNVHLHNEIIEAGSLKGLMGIFSTLFLYFSLFYIAYKKRALGLLILTLGIVGIGLSDVIIWARSIPIIIISAIVLLLVINNRNNTIN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11424-MONOMER" "O-antigen ligase" ["WaaL", "RfaL", "M-antigen ligase", "surface polymer:lipid A-core ligase"] "MLTSFKLHSLKPYTLKSSMILEIITYILCFFSMIIAFVDNTFSIKIYNITAIVCLLSLILRGRQENYNIKNLILPLSIFLIGLLDLIWYSAFKVDNSPFRATYHSYLNTAKIFIFGSFIVFLTLTSQLKSKKESVLYTLYSLSFLIAGYAMYINSIHENDRISFGVGTATGAAYSTMLIGIVSGVAILYTKKNHPFLFLLNSCAVLYVLALTQTRATLLLFPIICVAALIAYYNKSPKKFTSSIVLLIAILASIVIIFNKPIQNRYNEALNDLNSYTNANSVTSLGARLAMYEIGLNIFIKSPFSFRSAESRAESMNLLVAEHNRLRGALEFSNVHLHNEIIEAGSLKGLMGIFSTLFLYFSLFYIAYKKRALGLLILTLGIVGIGLSDVIIWARSIPIIIISAIVLLLVINNRNNTIN" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11425-MONOMER" "lipopolysaccharide core heptose (II) kinase" ["WaaY", "RfaY", "L-glycero-D-manno-heptose (II) kinase"] "MIQKSKIKDLVVFTDENNSKYLNVLNDFLSYNINIIKVFRSIDDTKVMLIDTDYGKLILKVFSPKVKRNERFFKSLLKGDYYERLFEQTQKVRNEGLNTLNDFYLLAERKTLRFVHTYIMIIEYIDGIELCDMPDIDDALKNKIQQSINALHQHGMVSGDPHRGNFIIKNGEVRIIDLSGKRASAQRKAKDRIDLERHYGIKNEIRDLGYYLLVYRKKMRNFMRRLKGKPAR" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11426-MONOMER" "lipopolysaccharide core biosynthesis protein WaaZ" ["WaaZ", "RfaZ", "protein involved in KdoIII attachment during lipopolysaccharide core biosynthesis"] "MKNIRYIDKKDVENLIENKISDDVIIFLSGPTSQKTPLSVLRTKDIIAVNGSAQYLLSNNIVPFIYVLTDVRFLHQRRDDFYKFSQRSRYTIVNVDVYEHASKEDKLYILQNCLVLRSFYRREKGGFIKKIKFNILRQIHKELLISVPLSKKGRLVGFCKDISLGYCSCHTIAFAAIQIAYSLKYARIICSGLDLTGSCSRFYDENKNPMPSELSRDLFKILPFFRFMHDNVKDINIYNLSDDTAISYDVIPFIKLQDISAEESKDMTRKKMQYRTSTDSYAN" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11429-MONOMER" "protein YjaZ" ["HtrC", "YjaZ"] "MKQEVEKWRPFGHPDGDIRDLSFLDAHQAVYVQHHEGKEPLEYRFWVTYSLHCFTKDYEHQTNEEKQSLMYHAPKESRPFCQHRYNLARTHLKRTILALPESNVIHAGYGSYAVIEVDLDGGDKAFYFVAFRAFREKKKLRLHVTSAYPISEKQKGKSVKFFTIAYNLLRNKQLPQPSK" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -1032,8 +1032,8 @@ "EG11450-MONOMER" "macrodomain Ori protein" ["MaoP", "YifE"] "MAESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGYAFNELDLGKREPVTEEEKLFVAVCRGEREPVTEAERVWSKYMTRIKRPKRFHTLSGGKPQVEGAEDYTDSDD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "EG11462-MONOMER" "DUF2233 domain-containing protein YigE" ["YigE"] "MAHQLLIGKGMITLNLKRIFLALTLLPLFAVAADDCALSDPTLTVQAYTVNPQTERVKMYWQKANGEAWGTLHALLADINSQGQVQMAMNGGIYDESYAPLGLYIENGQQKVALNLASGEGNFFIRPGGVFYVAGDKVGIVRLDAFKTSKEIQFAVQSGPMLMENGVINPRIHPNVASSKIRNGVGINKHGNAVFLLSQQATNFYDFACYAKAKLNVEQLLYLDGTISHMYMKGGAIPWQRYPFVTMISVERKG" [] ["CCO-MEMBRANE"] 0 [] {} 0 "EG11464-MONOMER" "DUF2628 domain-containing protein YigF" ["YigF"] "MSKEYMNDGSLSEKWKYRFNFYDQHGFPGFWGATPEYKAAFKALKVRQRLTIQMNFIAFFCSWIYLFVLGLWKKAIIVLLLGILSLFVGALIGVNILGIAVAAYVAVNTNKWFYEKEVKGLNTWSL" ["CCO-PM-BAC-NEG"] [] 0 [] {} 0 -"EG11465-MONOMER" "inner membrane protein" ["YigG"] "MLRIFIPTSNGKISRRRYIFSFILINFIFAFLIIFFNDGEAGFLVIVSTIVLHYLVINMNCQRLRDSGFIYIKTYVFGTLAVYIISIITMIAEDFACSGNGSMIFLICYFSTFSMLMLAPTDSSKQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG11466-MONOMER" "putative transporter RarD" ["YigH", "RarD"] "MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYTQRRTSK" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11465-MONOMER" "inner membrane protein YigG" ["YigG"] "MLRIFIPTSNGKISRRRYIFSFILINFIFAFLIIFFNDGEAGFLVIVSTIVLHYLVINMNCQRLRDSGFIYIKTYVFGTLAVYIISIITMIAEDFACSGNGSMIFLICYFSTFSMLMLAPTDSSKQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11466-MONOMER" "putative transporter RarD" ["YigH", "RarD"] "MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYTQRRTSK" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11467-MONOMER" "acyl-CoA thioesterase YigI" ["YigI"] "MSAVLTAEQALKLVGEMFVYHMPFNRALGMELERYEKEFAQLAFKNQPMMVGNWAQSILHGGVIASALDVAAGLVCVGSTLTRHETISEDELRQRLSRMGTIDLRVDYLRPGRGERFTATSSLLRAGNKVAVARVELHNEEQLYIASATATYMVG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11470-MONOMER" "phosphosugar phosphatase YigL" ["YigL"] "MYQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGINFVFATGRHHVDVGQIRDNLEIKSYMITSNGARVHDLDGNLIFAHNLDRDIASDLFGVVNDNPDIITNVYRDDEWFMNRHRPEEMRFFKEAVFQYALYEPGLLEPEGVSKVFFTCDSHEQLLPLEQAINARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGSAHQRLKDLHPELEVIGTNADDAVPHYLRKLYLS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "EG11471-MONOMER" "biotin transporter" ["BioP", "BirB", "YigM"] "MALLIITTILWAFSFSFYGEYLAGHVDSYFAVLVRVGLAALVFLPFLRTRGNSLKTVGLYMLVGAMQLGVMYMLSFRAYLYLTVSELLLFTVLTPLYITLIYDIMSKRRLRWGYAFSALLAVIGAGIIRYDQVTDHFWTGLLLVQLSNITFAIGMVGYKRLMETRPMPQHNAFAWFYLGAFLVAVIAWFLLGNAQKMPQTTLQWGILVFLGVVASGIGYFMWNYGATQVDAGTLGIMNNMHVPAGLLVNLAIWHQQPHWPTFITGALVILASLWVHRKWVAPRSSQTADDRRRDCALSE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -1042,11 +1042,11 @@ "EG11479-MONOMER" "twin arginine protein translocation system - TatC protein" ["YigV", "YigU", "MttB"] "MSVEDTQPLITHLIELRKRLLNCIIAVIVIFLCLVYFANDIYHLVSAPLIKQLPQGSTMIATDVASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMALFMAFGVSFEVPVAIVLLCWMGITSPEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIPMYCLFEIGVFFSRFYVGKGRNREEENDAEAESEKTEE" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 1 [] {} 1 "EG11481-MONOMER" "3' → 5' ssDNA/RNA exonuclease TatD" ["YigX", "YigW", "MttC", "TatD", "ExoXI", "exonuclease XI"] "MFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHILQRIAHWRGEDAAWLAATTDANVKTLFGIAF" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "EG11484-MONOMER" "IMPACT family member YigZ" ["YigZ"] "MESWLIPAAPVTVVEEIKKSRFITMLAHTDGVEAAKAFVESVRAEHPDARHHCVAWVAGAPDDSQQLGFSDDGEPAGTAGKPMLAQLMGSGVGEITAVVVRYYGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRGSLQLLAIEE" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11486-MONOMER" "lipid IIIECA flippase" ["Wzx", "YifJ", "WzxE"] "MSLAKASLWTAASTLVKIGAGLLVGKLLAVSFGPAGLGLAANFRQLITVLGVLAGAGIFNGVTKYVAQYHDNPQQLRRVVGTSSAMVLGFSTLMALVFVLAAAPISQGLFGNTDYQGLVRLVALVQMGIAWGNLLLALMKGFRDAAGNALSLIVGSLIGVLAYYVSYRLGGYEGALLGLALIPALVVIPAAIMLIKRGVIPLSYLKPSWDNGLAGQLSKFTLMALITSVTLPVAYIMMRKLLAAQYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRLTEKRDITREVVKSLKFVLPAVAAASFTVWLLRDFAIWLLLSNKFTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQFTLLMVFAHWLIPAHGALGAAQAYMATYIVYFSLCCGVFLLWRRRA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG11488-MONOMER" "inhibitor of c-type lysozyme, putative lipoprotein" ["YdhA", "MliC"] "MTMKKLLIIILPVLLSGCSAFNQLVERMQTDTLEYQCDEKPLTVKLNNPRQEVSFVYDNQLLHLKQGISASGARYTDGIYVFWSKGDEATVYKRDRIVLNNCQLQNPQR" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"EG11486-MONOMER" "lipid IIIECA flippase" ["Wzx", "YifJ", "WzxE"] "MSLAKASLWTAASTLVKIGAGLLVGKLLAVSFGPAGLGLAANFRQLITVLGVLAGAGIFNGVTKYVAQYHDNPQQLRRVVGTSSAMVLGFSTLMALVFVLAAAPISQGLFGNTDYQGLVRLVALVQMGIAWGNLLLALMKGFRDAAGNALSLIVGSLIGVLAYYVSYRLGGYEGALLGLALIPALVVIPAAIMLIKRGVIPLSYLKPSWDNGLAGQLSKFTLMALITSVTLPVAYIMMRKLLAAQYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRLTEKRDITREVVKSLKFVLPAVAAASFTVWLLRDFAIWLLLSNKFTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQFTLLMVFAHWLIPAHGALGAAQAYMATYIVYFSLCCGVFLLWRRRA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11488-MONOMER" "inhibitor of c-type lysozyme, putative lipoprotein" ["YdhA", "MliC"] "MTMKKLLIIILPVLLSGCSAFNQLVERMQTDTLEYQCDEKPLTVKLNNPRQEVSFVYDNQLLHLKQGISASGARYTDGIYVFWSKGDEATVYKRDRIVLNNCQLQNPQR" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 0 "EG11489-MONOMER" "curlin" ["CsgA"] "MKLLKVAAIAAIVFSGSALAGVVPQYGGGGNHGGGGNNSGPNSELNIYQYGGGNSALALQTDARNSDLTITQHGGGNGADVGQGSDDSSIDLTQRGFGNSATLDQWNGKNSEMTVKQFGGGNGAAVDQTASNSSVNVTQVGFGNNATAHQY" [] ["CCO-EXTRACELLULAR", "CCO-PILUS"] 0 [] {} 0 -"EG11494-MONOMER" "endolytic murein transglycosylase" ["YceG"] "MKKVLLIILLLLVVLGIAAGVGVWKVRHLADSKLLIKEETIFTLKPGTGRLALGEQLYADKIINRPRVFQWLLRIEPDLSHFKAGTYRFTPQMTVREMLKLLESGKEAQFPLRLVEGMRLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGWFWPDTWMYTANTTDVALLKRAHKKMVKAVDSAWEGRADGLPYKDKNQLVTMASIIEKETAVASERDKVASVFINRLRIGMRLQTDPTVIYGMGERYNGKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVLKEKNAQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG11495-MONOMER" "acid-resistance membrane protein" ["YhiA", "HdeD"] "MLYIDKATILKFDLEMLKKHRRAIQFIAVLLFIVGLLCISFPFVSGDILSTVVGALLICSGIALIVGLFSNRSHNFWPVLSGFLVAVAYLLIGYFFIRAPELGIFAIAAFIAGLFCVAGVIRLMSWYRQRSMKGSWLQLVIGVLDIVIAWIFLGATPMVSVTLVSTLVGIELIFSAASLFSFASLFVKQQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11494-MONOMER" "endolytic murein transglycosylase" ["YceG"] "MKKVLLIILLLLVVLGIAAGVGVWKVRHLADSKLLIKEETIFTLKPGTGRLALGEQLYADKIINRPRVFQWLLRIEPDLSHFKAGTYRFTPQMTVREMLKLLESGKEAQFPLRLVEGMRLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGWFWPDTWMYTANTTDVALLKRAHKKMVKAVDSAWEGRADGLPYKDKNQLVTMASIIEKETAVASERDKVASVFINRLRIGMRLQTDPTVIYGMGERYNGKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVLKEKNAQ" ["CCO-PM-BAC-NEG"] ["CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11495-MONOMER" "acid-resistance membrane protein" ["YhiA", "HdeD"] "MLYIDKATILKFDLEMLKKHRRAIQFIAVLLFIVGLLCISFPFVSGDILSTVVGALLICSGIALIVGLFSNRSHNFWPVLSGFLVAVAYLLIGYFFIRAPELGIFAIAAFIAGLFCVAGVIRLMSWYRQRSMKGSWLQLVIGVLDIVIAWIFLGATPMVSVTLVSTLVGIELIFSAASLFSFASLFVKQQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11496-MONOMER" "putative peptide chain release factor" ["PrfH"] "MLETETGRYSDTLRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGIGRFTADEQEQSDAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAALKSQRRMFHHQIERGNPRRTFTGMAFIEG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11497-MONOMER" "ribosomal protein L11 methyltransferase" ["YhdI", "PrmA", "methylase for 50S ribosomal subunit protein L11", "methyltransferase of 50S ribosomal subunit protein L11", "methyltransferase for 50S ribosomal subunit protein L11"] "MPWIQLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPLPGETRLWGDTDVIGLFDAETDMNDVVAILENHPLLGAGFAHKIEQLEDKDWEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLTGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAERNGVSDRLELYLPKDQPEEMKADVVVANILAGPLRELAPLISVLPVSGGLLGLSGILASQAESVCEAYADSFALDPVVEKEEWCRITGRKN" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11498-MONOMER" "DNA adenine methyltransferase" ["YhdJ"] "MRTGCEPTRFGNEAKTIIHGDALAELKKIPAESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKLFTIKSRIVWSYDSSGVQAKKHYGSMYEPILMMVKDAKNYTFNGDAILVEAKTGSQRALIDYRKNPPQPYNHQKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSEVDPDLITK" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -1060,23 +1060,23 @@ "EG11509-MONOMER" "uncharacterized protein MbiA" ["MbiA", "HtpY", "HtgA"] "MRVSWLESKCDTPFANNLSFISSGSSSSSSFTLASTACRNSCLCSSSIFFQVLRRNCSSNCCSISNVDISLSAFSFNRFETSSKMARYNLPCPRSLLAILSPPKCCNSPAISCQLRRCCSGCPSIDLNSSLRISTLERRVLPFSLWVSNRAKFANCSSLQC" [] ["CCO-MEMBRANE"] 0 [] {} 0 "EG11511-MONOMER" "molybdopterin adenylyltransferase" ["YaaG", "MogA", "ChlG", "BisD", "Mog"] "MNTLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSRQVGVIRKQALILNLPGQPKSIKETLEGVKDAEGNVVVHGIFASVPYCIQLLEGPYVETAPEVVAAFRPKSARRDVSE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11512-MONOMER" "acetate/succinate:H+ symporter" ["SatP", "YaaH"] "MGNTKLANPAPLGLMGFGMTTILLNLHNVGYFALDGIILAMGIFYGGIAQIFAGLLEYKKGNTFGLTAFTSYGSFWLTLVAILLMPKLGLTDAPNAQFLGVYLGLWGVFTLFMFFGTLKGARVLQFVFFSLTVLFALLAIGNIAGNAAIIHFAGWIGLICGASAIYLAMGEVLNEQFGRTVLPIGESH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG11514-MONOMER" "periplasmic protein GltF" ["OssB", "GltF"] "MFFKKNLTTAAICAALSVAAFSAMATDSTDTELTIIGEYTPGACTPVVTGGGIVDYGKHHNSALNPTGKSNKLVQLGRKNSTLNITCTAPTLIAVTSKDNRQSTIVALNDTSYIEKAYDTLVDMKGTKNAFGLGSAPNGQKIGAASIGIDRSNGGIHAADDTGEIPVDLIQTDHWSAATPTWKASSNGAFCSLTSCSAIERGYSVAKTGELTPVAITAVTFPLLIDAAVNDNTILGSDETIKLDGNVTISVQYL" ["CCO-PERI-BAC"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"EG11514-MONOMER" "periplasmic protein GltF" ["OssB", "GltF"] "MFFKKNLTTAAICAALSVAAFSAMATDSTDTELTIIGEYTPGACTPVVTGGGIVDYGKHHNSALNPTGKSNKLVQLGRKNSTLNITCTAPTLIAVTSKDNRQSTIVALNDTSYIEKAYDTLVDMKGTKNAFGLGSAPNGQKIGAASIGIDRSNGGIHAADDTGEIPVDLIQTDHWSAATPTWKASSNGAFCSLTSCSAIERGYSVAKTGELTPVAITAVTFPLLIDAAVNDNTILGSDETIKLDGNVTISVQYL" ["CCO-PERI-BAC"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11515-MONOMER" "putative fimbrial chaperone YhcA" ["YhcA"] "MLRHITFTVFITTSMNTLATGMVPETSVLLVDEKRGEASINIKNTDDHPSLLYTTIVDLPESNKSIRLIPTQPVIRVEAGQVQQVRFLLQATVPLQSEELKRVTFEGIPPKDDKSSRVTVSIRQDLPVLIHPASLPEERETWKFLEWRKNGDQIEISNPSNYVVRMTLQFKTLPSGKTGAINKTYFLPHTSTTTALTNATDTKVEFYPASRYGYRGNKYVTDLK" [] ["CCO-CYTOSOL", "CCO-PERI-BAC"] 0 [] {} 0 "EG11516-MONOMER" "PF04293 family protein YcgB" ["YcgB"] "MATIDSMNKDTTRLSDGPDWTFDLLDVYLAEIDRVAKLYRLDTYPHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARKYITECEERYGVDEVERLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKTVAEARRYPSEPQENLLYFMEKNAPLLESWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINPYALGFAMFQDIKRICQSPTEEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPKVMRDFRFFTVLDDDRHNYLEISAIHNEEGYREIRNRLSSQYNLSNLEPNIQIWNVDLRGDRSLTLRYIPHNRAPLDRGRKEVLKHVHRLWGFDVMLEQQNEDGSIELLERCPPRMGNL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11517-MONOMER" "fructose-1,6-bisphosphatase 2" ["GlpX", "fructose 1,6-bisphosphatase II"] "MRRELAIEFSRVTESAALAGYKWLGRGDKNTADGAAVNAMRIMLNQVNIDGTIVIGEGEIDEAPMLYIGEKVGTGRGDAVDIAVDPIEGTRMTAMGQANALAVLAVGDKGCFLNAPDMYMEKLIVGPGAKGTIDLNLPLADNLRNVAAALGKPLSELTVTILAKPRHDAVIAEMQQLGVRVFAIPDGDVAASILTCMPDSEVDVLYGIGGAPEGVVSAAVIRALDGDMNGRLLARHDVKGDNEENRRIGEQELARCKAMGIEAGKVLRLGDMARSDNVIFSATGITKGDLLEGISRKGNIATTETLLIRGKSRTIRRIQSIHYLDRKDPEMQVHIL" [] ["CCO-CYTOSOL"] 0 [] {"MN+2": 2} 1 "EG11519-MONOMER" "DNA-binding transcriptional repressor NikR" ["YhhG", "NikR"] "MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQHGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHLQCLPKED" [] ["CCO-CYTOSOL"] 0 [] {"NI+2": 1} 1 "EG11520-MONOMER" "PF15631 family protein YhhH" ["YhhH"] "MSAEFMVICKKILFRNCVIVSLFVFTYNTWAQCNNNIKIMRKYESEGKYTVRNLVKNKAIALELAEIYVKNRYGQDAAEEEKPYEITELTTSWVVEGTIHSDQIAGGVFIIEIGKNDGRILNFGHGK" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11521-MONOMER" "DUF2517 domain-containing protein YbfA" ["YbfA"] "MELYREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLHRVWSKTSDKPVWMDQAEKATGDFY" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 -"EG11522-MONOMER" "uncharacterized protein YbfB" ["YbfB"] "MKYIIFLFRAIWLALSLLILFFSMHRLSLLDSTRDVSELISLMSYGMMVICFPTGIVFFIALIFIGTVSDIIGVRIDSKYIMAIIIWLYFLSGGYIQWFVLSKRIINK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11522-MONOMER" "uncharacterized protein YbfB" ["YbfB"] "MKYIIFLFRAIWLALSLLILFFSMHRLSLLDSTRDVSELISLMSYGMMVICFPTGIVFFIALIFIGTVSDIIGVRIDSKYIMAIIIWLYFLSGGYIQWFVLSKRIINK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11523-MONOMER" "uncharacterized protein YbfC" ["YbfC"] "MKRVLFFLLMIFVSFGVIADCEIQAKDHDCFTIFAKGTIFSAFPVLNNKAMWRWYQNEDIGEYYWQTELGTCKNNKFTPSGARLLIRVGSLRLNENHAIKGTLQELINTAEKTAFLGDRFRSYIRAGIYQKKSSDPVQLLAVLDNSIMVKYFKDEKPTYARMTAHLPNKNESYECLIKIQHELIRSEEK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11524-MONOMER" "H repeat-associated putative transposase YbfD" ["YbfD"] "MELKKLMEHISIIPDYRQAWKVEHKLSDILLLTICAVISGAEGWEDIEDFGETHPDFLKQYGDFENGIPVHDTIARVVSCICPAKFHESFINWMLDYHSSDDKDVIAIDGKIHRHSYDKSRRKGAIHVISAFSTMHSLVIGQIKTDKKSNEITAIPELLNMLDIKGKIIKTDAMGCQKDIAEKIQKQGGDYLFAVKGNQGRLNKAFEEKFPLKELNNPKHDSYAISEKSHGREETRLHIVCDVPDELIDFTFE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11525-MONOMER" "putative transposase" ["YhhI"] "MELKKLMEHISIIPDYRQTWKVEHKLSDILLLTICAVISGAEGWEDIEDFGETHLDFLKQYGDFENGIPVHDTIARVVSCISPAKFHECFINWMRDCHSSDDKDVIAIDGKTLRHSYDKSRRRGAIHVISAFSTMHSLVIGQIKTDEKSNEITAIPELLNMLDIKGKIITTDAMGCQKDIAEKIQKQGGDYLFAVKGTQGRLNKAFEEKFPLKELNNPEHDSYAISEKSHGREEIRLHIVCDVPDELIDFTFEWKGLKKLCVAVSFRSIIAEQKKEPEMTVRYYISSADLTAEKFATAIRNHWHVENKLHWRLDVVMNEDDCKIRRGNAAELFSGIRHIAINILTNDKVFKAGLRRKMRKAAMDRNYLASVLAGSGLS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11526-MONOMER" "H repeat-associated putative transposase YdcC" ["YdcC"] "MELKKLMGHISIIPDYRQAWKMEHKLSDILLLTICAVISGAEGWEDIEDFGETHPDFLKQYGDFENGIPVHDTIARVVSCISPAKFHECFINWMRDCHSSDDKDVIAIDGKTLRHSYDKSRRRGAIHVISAFSTMHSLVIGQIKTDEKSNEITAIPELLNMLDIKGKIITTDAMGCQKDIAEKIQKQGGDYLFAVKGNQGRLNKAFEEKFPLKELNNPAHDSYAMSEKSHGREEIRLHIVCDVPDELIDFTFEWKGLKKLCVAVSFRSIIAEQKKELEMTVRYYISSADLTAEKFATAIRNHWHVENKLHWRLDVVMNEDDCKIRRGNAAELFSGIRHIAINILTNDKVFKAGLRRKMRKAAMDRNYLASVLTGSGLS" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11529-MONOMER" "cell division protein FtsN" ["MsgA", "FtsN", "essential cell division protein FtsN"] "MAQRDYVRRSQPAPSRRKKSTSRKKQRNLPAVSPAMVAIAAAVLVTFIGGLYFITHHKKEESETLQSQKVTGNGLPPKPEERWRYIKELESRQPGVRAPTEPSAGGEVKTPEQLTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASSQQPYQDLLQTPAHTTAQSKPQQAAPVARAADAPKPTAEKKDERRWMVQCGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRLAAGG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11529-MONOMER" "cell division protein FtsN" ["MsgA", "FtsN", "essential cell division protein FtsN"] "MAQRDYVRRSQPAPSRRKKSTSRKKQRNLPAVSPAMVAIAAAVLVTFIGGLYFITHHKKEESETLQSQKVTGNGLPPKPEERWRYIKELESRQPGVRAPTEPSAGGEVKTPEQLTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASSQQPYQDLLQTPAHTTAQSKPQQAAPVARAADAPKPTAEKKDERRWMVQCGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRLAAGG" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11533-MONOMER" "stress-induced protein" ["YchH"] "MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAHGAVLSIFVGAILWLAGARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11534-MONOMER" "small heat shock protein IbpA" ["HtpN", "HslT", "IbpA"] "MRNFDLSPLYRSAIGFDRLFNHLENNQSQSNGGYPPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRGANLVNGLLYIDLERVIPEAKKPRRIEIN" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11535-MONOMER" "small heat shock protein IbpB" ["HslS", "HtpE", "IbpB"] "MRNFDLSPLMRQWIGFDKLANALQNAGESQSFPPYNIEKSDDNHYRITLALAGFRQEDLEIQLEGTRLSVKGTPEQPKEEKKWLHQGLMNQPFSLSFTLAENMEVSGATFVNGLLHIDLIRNEPEPIAAQRIAISERPALNS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"EG11536-MONOMER" "putative transport protein YidE" ["YibE", "YidE"] "MSDIALTVSILALVAVVGLFIGNVKFRGIGLGIGGVLFGGIIVGHFVSQAGMTLSSDMLHVIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVIIGGLVTAILHKLFDIPLPVVLGIFSGAVTNTPALGAGQQILRDLGTPMEMVDQMGMSYAMAYPFGICGILFTMWMLRVIFRVNVETEAQQHESSRTNGGALIKTINIRVENPNLHDLAIKDVPILNGDKIICSRLKREETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQEVDTSLSTKGTDLRVERVVVTNENVLGKRIRDLHFKERYDVVISRLNRAGVELVASGDISLQFGDILNLVGRPSAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLLGSIPVFVPGFPAALKLGLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKSGGDFVNTLVNGEGLSWIGYGALITAVPLITVGILARMLAKMNYLTMCGMLAGSMTDPPALAFANNLHPTSGAAALSYATVYPLVMFLRIITPQLLAVLFWSIG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11536-MONOMER" "putative transport protein YidE" ["YibE", "YidE"] "MSDIALTVSILALVAVVGLFIGNVKFRGIGLGIGGVLFGGIIVGHFVSQAGMTLSSDMLHVIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVIIGGLVTAILHKLFDIPLPVVLGIFSGAVTNTPALGAGQQILRDLGTPMEMVDQMGMSYAMAYPFGICGILFTMWMLRVIFRVNVETEAQQHESSRTNGGALIKTINIRVENPNLHDLAIKDVPILNGDKIICSRLKREETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQEVDTSLSTKGTDLRVERVVVTNENVLGKRIRDLHFKERYDVVISRLNRAGVELVASGDISLQFGDILNLVGRPSAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLLGSIPVFVPGFPAALKLGLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKSGGDFVNTLVNGEGLSWIGYGALITAVPLITVGILARMLAKMNYLTMCGMLAGSMTDPPALAFANNLHPTSGAAALSYATVYPLVMFLRIITPQLLAVLFWSIG" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11537-MONOMER" "DUF480 domain-containing protein YceH" ["YceH"] "MKYQLTALEARVIGCLLEKQVTTPEQYPLSVNGVVTACNQKTNREPVMNLSESEVQEQLDNLVKRHYLRTVSGFGNRVTKYEQRFCNSEFGDLKLSAAEVALITTLLLRGAQTPGELRSRAARMYEFSDMAEVESTLEQLANREDGPFVVRLAREPGKRENRYMHLFSGEVEDQPAVTDMSNAVDGDLQARVEALEIEVAELKQRLDSLLAHLGD" ["CCO-CYTOSOL"] [] 0 [] {} 0 "EG11538-MONOMER" "tRNA m6A37 methyltransferase" ["TrmM", "YfiC", "TrmN6"] "MSQSTSVLRRNGFTFKQFFVAHDRCAMKVGTDGILLGAWAPVAGVKRCLDIGAGSGLLALMLAQRTDDSVMIDAVELESEAAAQAQENINQSPWAERINVHTADIQQWITQQTVRFDLIISNPPYYQQGVECSTPQREQARYTTTLDHPSLLTCAAECITEEGFFCVVLPEQIGNGFTELALSMGWHLRLRTDVAENEARLPHRVLLAFSPQAGECFSDRLVIRGPDQNYSEAYTALTQAFYLFM" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11544-MONOMER" "DNA-binding transcriptional activator GadE" ["YhiT", "YhiE", "GadE", "acid-responsive regulator of gadA and gadBC"] "MIFLMTKDSFLLQGFWQLKDNHEMIKINSLSEIKKVGNKPFKVIIDTYHNHILDEEAIKFLEKLDAERIIVLAPYHISKLKAKAPIYFVSRKESIKNLLEITYGKHLPHKNSQLCFSHNQFKIMQLILKNKNESNITSTLNISQQTLKIQKFNIMYKLKLRRMSDIVTLGITSYF" [] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -1091,10 +1091,10 @@ "EG11563-MONOMER" "putative electron transfer flavoprotein FixB" ["YaaR", "FixB", "putative electron transfer flavoprotein, NAD/FAD-binding domain and ETFP adenine nucleotide-binding domain-like"] "MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLNGKPDDRMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR" [] [] 0 [] {} 0 "EG11564-MONOMER" "putative oxidoreductase FixC" ["YaaS", "FixC", "flavoprotein (electron transport), possibly involved in anaerobic carnitine metabolism"] "MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11565-MONOMER" "putative ferredoxin FixX" ["YaaT", "FixX", "putative ferredoxin possibly involved in anaerobic carnitine metabolism"] "MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11568-MONOMER" "regulator of KefC-mediated potassium transport and quinone oxidoreductase" ["KefF", "YabF"] "MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 -"EG11569-MONOMER" "lipopolysaccharide assembly protein LptD" ["LptD", "YabG", "OstA", "Imp"] "MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNTL" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 -"EG11570-MONOMER" "co-chaperone protein DjlA" ["YabH", "DjlA"] "MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQFGGGYQQQTGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 -"EG11571-MONOMER" "DedA family protein YabI" ["YabI"] "MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAWLAGIIGCLMGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLIRHPLMPVYIDILRKVVGV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11568-MONOMER" "regulator of KefC-mediated potassium transport and quinone oxidoreductase" ["KefF", "YabF"] "MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 +"EG11569-MONOMER" "lipopolysaccharide assembly protein LptD" ["LptD", "YabG", "OstA", "Imp"] "MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNTL" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 1 +"EG11570-MONOMER" "co-chaperone protein DjlA" ["YabH", "DjlA"] "MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQFGGGYQQQTGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11571-MONOMER" "DedA family protein YabI" ["YabI"] "MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAWLAGIIGCLMGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLIRHPLMPVYIDILRKVVGV" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11578-MONOMER" "transcription elongation factor GreB" ["GreB"] "MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYVKP" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11579-MONOMER" "N-glycosidase YbiA" ["YbiA"] "MPVRAQRIQHVMQDTIINFYSTSDDYGDFSNFAAWPIKVDGKTWPTSEHYFQAQKFLDEKYREEIRRVSSPMVAARMGRDRSKPLRKNWESVKEQVMRKALRAKFEQHAELRALLLATAPAKLVEHTENDAYWGDGGHGKGKNRLGYLLMELREQLAIEK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11580-MONOMER" "nonspecific DNA-binding protein YbiB" ["YbiB"] "MDYRKIIKEIGRGKNHARDLDRDTARGLYAHMLNGEVPDLELGGVLIALRIKGEGEAEMLGFYEAMQNHTIKLTPPAGKPMPIVIPSYNGARKQANLTPLLAILLHKLGFPVVVHGVSEDPTRVLTETIFELMGITPTLHGGQAQAKLDEHQPVFMPVGAFCPPLEKQLAMRWRMGVRNSAHTLAKLATPFAEGEALRLSSVSHPEYIGRVAKFFSDIGGRALLMHGTEGEVYANPQRCPQINLIDREGMRVLYEKQDTAGSELLPQAKDPETTAQWIERCLAGSEPIPESLKIQMACCLVATGEAATISDGLARVNQAF" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -1126,24 +1126,24 @@ "EG11649-MONOMER" "DNA-binding transcriptional regulator YafC" ["YafC", "predicted DNA-binding transcriptional regulator LYSR-type"] "MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLTEEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYPEVTLSLVSSETIINLIERKVDVAIRAGTLTDSSLRARPLFNSYRKIIASPDYISRYGKPETIDDLKQHICLGFTEPASLNTWPIARSDGQLHEVKYGLSSNSGETLKQLCLSGNGIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVKTAPGGAVREA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11650-MONOMER" "endonuclease/exonuclease/phosphatase domain-containing protein YafD" ["YafD"] "MRKNTYAMRYVAGQPAERILPPGSFASIGQALPPGEPLSTEERIRILVWNIYKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFVLPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNIHAVNFSLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRRRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVSEASVLVTRASDHNPLLVEFSPGKPDK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11651-MONOMER" "putative S-adenosylmethionine-dependent methyltransferase" ["YafE"] "MSGLPQGRPTFGAAQNVSAVVAYDLSAHMLDVVAQAAEARQLKNITTRQGYAESLPFADNAFDIVISRYSAHHWHDVGAALREVNRILKPGGRLIVMDVMSPGHPVRDIWLQTVEALRDTSHVRNYASGEWLTLINEANLIVDNLITDKLPLEFSSWVARMRTPEALVDAIRIYQQSASTEVRTYFALQNDGFFTSDIIMVDAHKAA" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11652-MONOMER" "serine endoprotease" ["HtrH", "HhoB", "DegS"] "MFVKLLRSVAIGLIVGAILLVAMPSLRSLNPLSTPQFDSTDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEYPATN" ["CCO-PERI-BAC"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 1 +"EG11652-MONOMER" "serine endoprotease" ["HtrH", "HhoB", "DegS"] "MFVKLLRSVAIGLIVGAILLVAMPSLRSLNPLSTPQFDSTDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEYPATN" ["CCO-PERI-BAC"] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 1 "EG11653-MONOMER" "frataxin CyaY" ["CyaY"] "MNDSEFHRLADQLWLTIEERLDDWDGDSDIDCEINGGVLTITFENGSKIIINRQEPLHQVWLATKQGGYHFDLKGDEWICDRSGETFWDLLEQAATQQAGETVSFR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11656-MONOMER" "flagellar biosynthesis protein FliH" ["FliH"] "MSDNLPWKTWTPDDLAPPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQELCRLAAPGVV" ["CCO-CYTOSOL"] ["CCO-CELL-PROJECTION", "CCO-CYTOSOL"] 0 [] {} 1 -"EG11659-MONOMER" "lipoprotein YedD" ["YedD"] "MKKLAIAGALLLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIVTKEGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDRPTAECAAALDKAPLPTPLP" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 -"EG11660-MONOMER" "putative selenium transporter YedE" ["YedE"] "MSWQQFKHAWLIKFWAPIPAVIAAGILSTYYFGITGTFWAVTGEFTRWGGQLLQLFGVHAEEWGYFKIIHLEGSPLTRIDGMMILGMFGGCFAAALWANNVKLRMPRSRIRIMQAIIGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFAIATAIGSWFGARFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRFRLGMLVFFGMLGWALLTAMNQPKLGLAMLFGVGFGLLIERAQICFTSAFRDMWITGRTHMAKAIIIGMAVSAIGIFSYVQLGVEPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNVIGSTILAYYWDDFAPALATDWDKINLLKTFGPMGGLLVTYLLLFAALMLIIGWEKRFFRRAAPQTAKEIA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11659-MONOMER" "lipoprotein YedD" ["YedD"] "MKKLAIAGALLLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIVTKEGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDRPTAECAAALDKAPLPTPLP" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11660-MONOMER" "putative selenium transporter YedE" ["YedE"] "MSWQQFKHAWLIKFWAPIPAVIAAGILSTYYFGITGTFWAVTGEFTRWGGQLLQLFGVHAEEWGYFKIIHLEGSPLTRIDGMMILGMFGGCFAAALWANNVKLRMPRSRIRIMQAIIGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFAIATAIGSWFGARFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRFRLGMLVFFGMLGWALLTAMNQPKLGLAMLFGVGFGLLIERAQICFTSAFRDMWITGRTHMAKAIIIGMAVSAIGIFSYVQLGVEPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNVIGSTILAYYWDDFAPALATDWDKINLLKTFGPMGGLLVTYLLLFAALMLIIGWEKRFFRRAAPQTAKEIA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11661-MONOMER" "putative sulfurtransferase YedF" ["YedF"] "MKNIVPDYRLDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCPQSINNIPLDARNHGYTVLDIQQDGPTIRYLIQK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11662-MONOMER" null ["YedK", "YedG", "abasic site processing protein"] "MCGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV" [] [] 1 [] {} 0 "EG11663-MONOMER" "FKBP-type peptidyl-prolyl cis-trans isomerase SlyD" ["SlyD", "WHP"] "MKVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHHDHDHDGCCGGHGHDHGHEHGGEGCCGGKGNGGCGCH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"NI+2": 1} 1 "EG11664-MONOMER" "protein SlyX" ["SlyX"] "MQDLSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPSNIASQAEETPPPHY" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11665-MONOMER" "undecaprenyl pyrophosphate phosphatase" ["BacA", "UppP"] "MSDMHSLLIAAILGVVEGLTEFLPVSSTGHMIIVGHLLGFEGDTAKTFEVVIQLGSILAVVVMFWRRLFGLIGIHFGRPLQHEGESKGRLTLIHILLGMIPAVVLGLLFHDTIKSLFNPINVMYALVVGGLLLIAAECLKPKEPRAPGLDDMTYRQAFMIGCFQCLALWPGFSRSGATISGGMLMGVSRYAASEFSFLLAVPMMMGATALDLYKSWGFLTSGDIPMFAVGFITAFVVALIAIKTFLQLIKRISFIPFAIYRFIVAAAVYVVFF" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11666-MONOMER" "cyclic pyranopterin monophosphate synthase" ["MoaC"] "MSQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMIIDGRHHKGDVFATARIAGIQAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKVEADD" [] ["CCO-CYTOSOL"] 1 [] {} 1 -"EG11671-MONOMER" "short chain fatty acid transporter" ["AtoE", "putative short chain fatty acid transporter"] "MIGRISRFMTRFVSRWLPDPLIFAMLLTLLTFVIALWLTPQTPISMVKMWGDGFWNLLAFGMQMALIIVTGHALASSAPVKSLLRTAASAAKTPVQGVMLVTFFGSVACVINWGFGLVVGAMFAREVARRVPGSDYPLLIACAYIGFLTWGGGFSGSMPLLAATPGNPVEHIAGLIPVGDTLFSGFNIFITVALIVVMPFITRMMMPKPSDVVSIDPKLLMEEADFQKQLPKDAPPSERLEESRILTLIIGALGIAYLAMYFSEHGFNITINTVNLMFMIAGLLLHKTPMAYMRAISAAARSTAGILVQFPFYAGIQLMMEHSGLGGLITEFFINVANKDTFPVMTFFSSALINFAVPSGGGHWVIQGPFVIPAAQALGADLGKSVMAIAYGEQWMNMAQPFWALPALAIAGLGVRDIMGYCITALLFSGVIFVIGLTLF" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG11674-MONOMER" "putative glycerol-3-phosphate acyltransferase" ["PlsY", "YgiH", "conserved inner membrane protein YgiH"] "MSAIAPGMILIAYLCGSISSAILVCRLCGLPDPRTSGSGNPGATNVLRIGGKGAAVAVLIFDVLKGMLPVWGAYELGVSPFWLGLIAIAACLGHIWPVFFGFKGGKGVATAFGAIAPIGWDLTGVMAGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFKPQFTFPVSMLSCLILLRHHDNIQRLWRRQETKIWTKFKRKREKDPE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11671-MONOMER" "short chain fatty acid transporter" ["AtoE", "putative short chain fatty acid transporter"] "MIGRISRFMTRFVSRWLPDPLIFAMLLTLLTFVIALWLTPQTPISMVKMWGDGFWNLLAFGMQMALIIVTGHALASSAPVKSLLRTAASAAKTPVQGVMLVTFFGSVACVINWGFGLVVGAMFAREVARRVPGSDYPLLIACAYIGFLTWGGGFSGSMPLLAATPGNPVEHIAGLIPVGDTLFSGFNIFITVALIVVMPFITRMMMPKPSDVVSIDPKLLMEEADFQKQLPKDAPPSERLEESRILTLIIGALGIAYLAMYFSEHGFNITINTVNLMFMIAGLLLHKTPMAYMRAISAAARSTAGILVQFPFYAGIQLMMEHSGLGGLITEFFINVANKDTFPVMTFFSSALINFAVPSGGGHWVIQGPFVIPAAQALGADLGKSVMAIAYGEQWMNMAQPFWALPALAIAGLGVRDIMGYCITALLFSGVIFVIGLTLF" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11674-MONOMER" "putative glycerol-3-phosphate acyltransferase" ["PlsY", "YgiH", "conserved inner membrane protein YgiH"] "MSAIAPGMILIAYLCGSISSAILVCRLCGLPDPRTSGSGNPGATNVLRIGGKGAAVAVLIFDVLKGMLPVWGAYELGVSPFWLGLIAIAACLGHIWPVFFGFKGGKGVATAFGAIAPIGWDLTGVMAGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFKPQFTFPVSMLSCLILLRHHDNIQRLWRRQETKIWTKFKRKREKDPE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11676-MONOMER" "peptidase component of the HslVU protease" ["ClpQ", "YiiC", "HtpO", "HslV"] "MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEELSYKA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"NA+": 1} 1 "EG11678-MONOMER" "fimbrial tip-adhesin YadC" ["YadC"] "MKTIFRYILFLALYSCCNTVSAYTSFIVGNNAGVDNYRGPSTAAQMTFNYTSTASNLVFYKPTQLGPTGVKMYWSYLDTGTGGGILYCNTSGRANPGPITIENAMVYSGKDYGGHKLFNTSVPGLYYTMLISRVWSAYDTITDIQSPGIYIGDPSNQEFFFSVTDSDLQTKGCNKADDYDKFWAIGGIVHNITVEFYTDTNFDPTLNQQVQLSSSSNYLYSFKAYSPGTKVVDHSNHIYVNFTLNNVKLTLPTCFTSILTGPSVNGSTVRMGEYSSGTIKNGASPVPFDISLQNCIRVRNIETKLVTGKVGTQNTQLLGNTLTGSTAAKGVGVLIEGLATSKNPLMTLKPNDTNSVYIDYETEDDTSDGVYPNQGNGTSQPLHFQATLKQDGNIAIEPGEFKATSTFQVTYP" ["CCO-PILUS"] ["CCO-EXTRACELLULAR", "CCO-PILUS"] 0 [] {} 0 "EG11681-MONOMER" "ribosome hibernation-promoting factor" ["YhbH", "Hpf"] "MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11682-MONOMER" "phosphotransferase system enzyme IIA(Ntr)" ["YhbI", "RpoP", "PtsN", "EIIANtr", "enzyme IIANtr", "EIIA(Ntr)"] "MTNNDTTLQLSSVLNRECTRSRVHCQSKKRALEIISELAAKQLSLPPQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTLRAVGVFVQLETPIAFDAIDNQPVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYQIITDTEGTPDEA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11683-MONOMER" "PF03458 family inner membrane protein YicG" ["YicG"] "MLLHILYLVGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGGSVRDILLGHYPLGWVKHPEYVIIVATAAVLTTIVAPVMPYLRKVFLVLDALGLVVFSIIGAQVALDMGHGPIIAVVAAVTTGVFGGVLRDMFCKRIPLVFQKELYAGVSFASAVLYIALQHYVSNHDVVIISTLVFGFFARLLALRLKLGLPVFYYSHEGH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11683-MONOMER" "PF03458 family inner membrane protein YicG" ["YicG"] "MLLHILYLVGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGGSVRDILLGHYPLGWVKHPEYVIIVATAAVLTTIVAPVMPYLRKVFLVLDALGLVVFSIIGAQVALDMGHGPIIAVVAAVTTGVFGGVLRDMFCKRIPLVFQKELYAGVSFASAVLYIALQHYVSNHDVVIISTLVFGFFARLLALRLKLGLPVFYYSHEGH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11684-MONOMER" "AsmA family protein YicH" ["YicH"] "MKFIGKLLLYILIALLVAIAGLYFLLQTRWGAEHISAWVSENSDYHLAFGAMDHRFSAPSHIVLENVTFGRDGQPATLVAKSVDIALSSRQLTEPRHVDTILLENGTLNLTDQTAPLPFKADRLQLRDMAFNSPNSEWKLSAQRVNGGVVPWSPKAGKVLGTKAQIQFSAGSLSLNDVPATNVLIEGSIDNDRVTLTNLGADIARGTLTGNAQRNADGSWQVENLRMADIRLQSEKSLTDFFAPLRSVPSLQIGRLEVIDARLQGPDWAVTDLDLSLRNMTFSKDDWQTQEGKLSMNASEFIYGSLHLFDPIINTEFSPQGVALRQFTSRWEGGMVRTSGNWLRDGKTLILDDAAIAGLEYTLPKNWQQLWMETTPGWLNSLQLKRFSASRNLIIDIDPDFPWQLTALDGYGANLTLVTDHKWGVWSGSANLNAAAATFNRVDVRRPSLALTANSSTVNISELSAFTEKGILEATASVSQTPQRQTHISLNGRGVPVNILQQWGWPELPLTGDGNIQLTASGDIQANVPLKPTVSGQLHAVNAAKQQVTQTMNAGIVSSGEVTSTEPVR" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11685-MONOMER" "α-D-xyloside xylohydrolase" ["YicI"] "MKISDGNWLIQPGLNLIHPLQVFEVEQQDNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAEFKSGNLSARVSKGEFWSLDFLRNGERITGSQVKNNGYVQDTNNQRNYMFERLDLGVGETVYGLGERFTALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQCVSFEVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEGRWTHLWHNDELDGSRWHKQQHGFLSLPVYVRDNTLLALGNNDQRPDYVWHEGTAFHLFNLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQDGSQAESEQGLVVKPQGNALTITL" [] [] 0 [] {} 1 "EG11688-MONOMER" "putative transporter YicL" ["YicL", "putative inner membrane protein"] "MGSTRKGMLNVLIAAVLWGSSGVCAQYIMEQSQMSSQFLTMTRLIFAGLILLTLSFVHGDKIFSIINNHKDAISLLIFSVVGALTVQLTFLLTIEKSNAATATVLQFLSPTIIVAWFSLVRKSRPGILVFCAILTSLVGTFLLVTHGNPTSLSISPAALFWGIASAFAAAFYTTYPSTLIARYGTLPVVGWSMLIGGLILLPFYARQGTNFVVNGSLILAFFYLVVIGTSLTFSLYLKGAQLIGGPKASILSCAEPLSSALLSLLLLGITFTLPDWLGTLLILSSVILISMDSRRRARKINRPARHK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -1151,9 +1151,9 @@ "EG11691-MONOMER" "adenine transporter" ["AdeQ", "YicO"] "MNNDNTDYVSNESGTLSRLFKLPQHGTTVRTELIAGMTTFLTMVYIVFVNPQILGAAQMDPKVVFVTTCLIAGIGSIAMGIFANLPVALAPAMGLNAFFAFVVVGAMGISWQTGMGAIFWGAVGLFLLTLFRIRYWMISNIPLSLRIGITSGIGLFIALMGLKNTGVIVANKDTLVMIGDLSSHGVLLGILGFFIITVLSSRHFHAAVLVSIVVTSCCGLFFGDVHFSGVYSIPPDISGVIGEVDLSGALTLELAGIIFSFMLINLFDSSGTLIGVTDKAGLIDGNGKFPNMNKALYVDSVSSVAGAFIGTSSVTAYIESTSGVAVGGRTGLTAVVVGVMFLLVMFFSPLVAIVPPYATAGALIFVGVLMTSSLARVNWDDFTESVPAFITTVMMPFTFSITEGIALGFMSYCIMKVCTGRWRDLNLCVVVVAALFALKIILVD" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11692-MONOMER" "adenine deaminase" ["AdeD", "Adu", "Ade", "YicP", "cryptic adenine deaminase"] "MNNSINHKFHHISRAEYQELLAVSRGDAVADYIIDNVSILDLINGGEISGPIVIKGRYIAGVGAEYTDAPALQRIDARGATAVPGFIDAHLHIESSMMTPVTFETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCDVNGASFTLEQMLAWRDHPQVTGLAEMMDYPGVISGQNALLDKLDAFRHLTLDGHCPGLGGKELNAYITAGIENCHESYQLEEGRRKLQLGMSLMIREGSAARNLNALAPLINEFNSPQCMLCTDDRNPWEIAHEGHIDALIRRLIEQHNVPLHVAYRVASWSTARHFGLNHLGLLAPGKQADIVLLSDARKVTVQQVLVKGEPIDAQTLQAEESARLAQSAPPYGNTIARQPVSASDFALQFTPGKRYRVIDVIHNELITHSHSSVYSENGFDRDDVSFIAVLERYGQRLAPACGLLGGFGLNEGALAATVSHDSHNIVVIGRSAEEMALAVNQVIQDGGGLCVVRNGQVQSHLPLPIAGLMSTDTAQSLAEQIDALKAAARECGPLPDEPFIQMAFLSLPVIPALKLTSQGLFDGEKFAFTTLEVTE" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11694-MONOMER" "uncharacterized protein YidF" ["YidF", "putative DNA-binding transcriptional regulator"] "MTGSQVIDAEEDRHKLVVEYKDALQPADFYHNFKQRGIRSVQLIPYLEFDDRGDLTAASVTAELWGKFLIALFECWVRADISRISIELFDATLQKWCGSENPQPRCDCQACDWHRLCPHARQETPDSVLCAGYQAFYSYSAPHMRVMRDLIKQHRSPMELMTMLR" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11695-MONOMER" "inner membrane protein YidG" ["YidG"] "MPDSRKARRIADPGLQPERTSLAWFRTMLGYGALMALAIKHNWHQAGMLFWISIGILAIVALILWHYTRNRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAILFAVTHIHQLIVFIERVA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG11696-MONOMER" "DUF202 domain-containing inner membrane protein YidH" ["YidH"] "MKISRLGEAPDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPVIRELLALLLCLFSGGLAMYGYLRWLRNEKAMRLKEDLPYTNSLLIISLILMVVAVIVMGLVLYAG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG11697-MONOMER" "putative inner membrane protein YidI" ["YidI"] "MGIIAQNKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIKGEKITTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAFHTLLFGIGIVCSILLIFLIFSFLTGGSLV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11695-MONOMER" "inner membrane protein YidG" ["YidG"] "MPDSRKARRIADPGLQPERTSLAWFRTMLGYGALMALAIKHNWHQAGMLFWISIGILAIVALILWHYTRNRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAILFAVTHIHQLIVFIERVA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11696-MONOMER" "DUF202 domain-containing inner membrane protein YidH" ["YidH"] "MKISRLGEAPDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPVIRELLALLLCLFSGGLAMYGYLRWLRNEKAMRLKEDLPYTNSLLIISLILMVVAVIVMGLVLYAG" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11697-MONOMER" "putative inner membrane protein YidI" ["YidI"] "MGIIAQNKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIKGEKITTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAFHTLLFGIGIVCSILLIFLIFSFLTGGSLV" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11702-MONOMER" "RNA decapping hydrolase" ["NudC", "YjaD", "NADH pyrophosphatase"] "MDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEWQGEPVWLVQQQRRHDMGSVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGYCGHEMYPSKTEWAMLCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCRAEYE" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1, "MG+2": 1} 1 "EG11703-MONOMER" "multidrug efflux pump membrane fusion lipoprotein AcrA" ["SipB", "Mbl", "Lir", "NbsA", "MtcA", "AcrA", "acridine efflux pump", "AcrA membrane fusion protein", "periplasmic adaptor protein AcrA"] "MNKNRGFTPLAVVLMLSGSLALTGCDDKQAQQGGQQMPAVGVVTVKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTLKQENGKAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEGLNPNAILVPQQGVTRTPRGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKAQEVTADNNQQAASGAQPEQSKS" ["CCO-PERI-BAC"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG11705-MONOMER" "putative sulfatase/phosphatase YidJ" ["YidJ"] "MKRPNFLFVMTDTQATNMVGCYSGKPLNTQNIDSLAAEGIRFNSAYTCSPVCTPARAGLFTGIYANQSGPWTNNVAPGKNISTMGRYFKDAGYHTCYIGKWHLDGHDYFGTGECPPEWDADYWFDGANYLSELTEKEISLWRNGLNSVEDLQANHIDETFTWAHRISNRAVDFLQQPARADEPFLMVVSYDEPHHPFTCPVEYLEKYADFYYELGEKAQDDLANKPEHHRLWAQAMPSPVGDDGLYHHPLYFACNDFVDDQIGRVINALTPEQRENTWVIYTSDHGEMMGAHKLISKGAAMYDDITRIPLIIRSPQGERRQVDTPVSHIDLLPTMMALADIEKPEILPGENILAVKEPRGVMVEFNRYEIEHDSFGGFIPVRCWVTDDFKLVLNLFTSDELYDRRNDPNEMHNLIDDIRFADVRSKMHDALLDYMDKIRDPFRSYQWSLRPWRKDARPRWMGAFRPRPQDGYSPVVRDYDTGLPTQGVKVEEKKQKF" [] ["CCO-CYTOSOL"] 0 [] {"CA+2": 1} 0 @@ -1168,7 +1168,7 @@ "EG11723-MONOMER" "quinone reductase" ["ChrR", "YieF", "chromate reductase"] "MSEKLQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNKPEFMGGVIQNKVDPQTGEVIDQGTLDHLTGQLTAFGEFIQRVKI" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11724-MONOMER" "adenine:H+ symporter" ["AdeP", "YieG", "PurP"] "MSHQHTTQTSGQGMLERVFKLREHGTTARTEVIAGFTTFLTMVYIVFVNPQILGVAGMDTSAVFVTTCLIAAFGSIMMGLFANLPVALAPAMGLNAFFAFVVVQAMGLPWQVGMGAIFWGAIGLLLLTIFRVRYWMIANIPVSLRVGITSGIGLFIGMMGLKNAGVIVANPETLVSIGNLTSHSVLLGILGFFIIAILASRNIHAAVLVSIVVTTLLGWMLGDVHYNGIVSAPPSVMTVVGHVDLAGSFNLGLAGVIFSFMLVNLFDSSGTLIGVTDKAGLADEKGKFPRMKQALYVDSISSVTGSFIGTSSVTAYIESSSGVSVGGRTGLTAVVVGLLFLLVIFLSPLAGMVPGYAAAGALIYVGVLMTSSLARVNWQDLTESVPAFITAVMMPFSFSITEGIALGFISYCVMKIGTGRLRDLSPCVIIVALLFILKIVFIDAH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11725-MONOMER" "6-phosphogluconate phosphatase" ["YieH"] "MSRIEAVFFDCDGTLVDSEVICSRAYVTMFQEFGITLDPEEVFKRFKGVKLYEIIDIVSLEHGVTLAKTEAEHVYRAEVARLFDSELEAIEGAGALLSAITAPMCVVSNGPNNKMQHSMGKLNMLHYFPDKLFSGYDIQRWKPDPALMFHAAKAMNVNVENCILVDDSVAGAQSGIDAGMEVFYFCADPHNKPIVHPKVTTFTHLSQLPELWKARGWDITA" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 -"EG11726-MONOMER" "putative inner membrane protein" ["YieI", "CbrB"] "MSVSRRVIHHGLYFAVLGPLIGVLFLVLYIFFAKEPLVLWVIIHPIFLLLSITTGAIPALLTGVMVACLPEKIGSQKRYRCLAGGIGGVVITEIYCAVIVHIKGMASSELFENILSGDSLVVRIIPALLAGVVMSRIITRLPGLDISCPETDSLS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11726-MONOMER" "putative inner membrane protein" ["YieI", "CbrB"] "MSVSRRVIHHGLYFAVLGPLIGVLFLVLYIFFAKEPLVLWVIIHPIFLLLSITTGAIPALLTGVMVACLPEKIGSQKRYRCLAGGIGGVVITEIYCAVIVHIKGMASSELFENILSGDSLVVRIIPALLAGVVMSRIITRLPGLDISCPETDSLS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11727-MONOMER" "PF03691 family colicin E2 tolerance protein CbrC" ["YieJ", "CbrC"] "MTQNIRPLPQFKYHPKPLETGAFEQDKTVECDCCEQQTSVYYSGPFYCVDEVEHLCPWCIADGSAAEKFAGSFQDDASIEGVEFEYDEEDEFAGIKNTYPDEMLKELVERTPGYHGWQQEFWLAHCGDFCVFIGYVGWNDIKDRLDEFANLEEDCENFGIRNSDLAKCLQKGGHCQGYLFRCLHCGKLRLWGDFS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11728-MONOMER" "putative glucosamine-6-phosphate deaminase YieK" ["YieK"] "MKLIITEDYQEMSRVAAHHLLGYMSKTRRVNLAITAGSTPKGMYEYLTTLVKGKPWYDNCYFYNFDEIPFRGKEGEGVTITNLRNLFFTPAGIKEENIQKLTIDNYREHDQKLAREGGLDLVVLGLGADGHFCGNLPNTTHFHEQTVEFPIQGEMVDIVAHGELGGDFSLVPDSYVTMGPKSIMAAKNLLIIVSGAGKAQALKNVLQGPVTEDVPASVLQLHPSLMVIADKAAAAELALG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11729-MONOMER" "putative hydrolase YieL" ["YieL", "putative xylanase"] "MNIKIAALTLAIASGISAQWAIAADMPASPAPTIPVKQYVTQVNADNSVTFRYFAPGAKNVSVVVGVPVPDNIHPMTKDEAGVWSWRTPILKGNLYEYFFNVDGVRSIDTGTAMTNPQRQVNSSMILVPGSYLDTRSVAHGDLIAITYHSNALQSERQMYVWTPPGYTGMGEPLPVLYFYHGFGDTGRSAIDQGRIPQIMDNLLAEGKIKPMLVVIPDTETDAKGIIPEDFVPQERRKVFYPLNAKAADRELMNDIIPLISKRFNVRKDADGRALAGLSQGGYQALVSGMNHLESFGWLATFSGVTTTTVPDEGVAARLNDPAAINQQLRNFTVVVGDKDVVTGKDIAGLKTELEQKKINFDYQEYPGLNHEMDVWRPAYAAFVQKLFK" [] [] 0 [] {} 0 @@ -1179,10 +1179,10 @@ "EG11735-MONOMER" "heme-containing peroxidase/deferrochelatase" ["YcdB", "EfeB"] "MQYKDENGVNEPSRRRLLKVIGALALAGSCPVAHAQKTQSAPGTLSPDARNEKQPFYGEHQAGILTPQQAAMMLVAFDVLASDKADLERLFRLLTQRFAFLTQGGAAPETPNPRLPPLDSGILGGYIAPDNLTITLSVGHSLFDERFGLAPQMPKKLQKMTRFPNDSLDAALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHAARSKGKETPINLLGFKDGTANPDSQNDKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQFRVEFWDRTPLKEQQTIFGRDKQTGAPLGMQHEHDVPDYASDPEGKVIALDSHIRLANPRTAESESSLMLRRGYSYSLGVTNSGQLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEYVKPIGGGYFFALPGVKDANDYFGSALLRV" ["CCO-PERI-BAC", "CCO-CYTOSOL"] ["CCO-PERI-BAC", "CCO-CYTOSOL"] 0 [] {"Heme-b": 1} 1 "EG11736-MONOMER" "D-glycero-β-D-manno-heptose-1,7-bisphosphate 7-phosphatase" ["GmhB", "YaeD", "D,D-heptose 1,7-bisphosphate phosphatase"] "MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLPQAIKKQQKPAQ" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MG+2": 1, "ZN+2": 1} 0 "EG11738-MONOMER" "regulator of sigma D" ["YjaE", "Rsd", "regulator of σ70 (σD), stationary phase protein"] "MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11739-MONOMER" "cyclic di-3',5'-guanylate-activated glycosyltransferase" ["NfrB", "bacteriophage N4 adsorption protein"] "MDWLLDVFATWLYGLKVIAITLAVIMFISGLDDFFIDVVYWVRRIKRKLSVYRRYPRMSYRELYKPDEKPLAIMVPAWNETGVIGNMAELAATTLDYENYHIFVGTYPNDPDTQRDVDEVCARFPNVHKVVCARPGPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELRLFNYLVERKDLIQIPVYPFEREWTHFTSMTYIDEFSELHGKDVPVREALAGQVPSAGVGTCFSRRAVTALLADGDGIAFDVQSLTEDYDIGFRLKEKGMTEIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSTAVRQKSRWIIGIVFQGFKTHKWTSSLTLNYFLWRDRKGAISNFVSFLAMLVMIQLLLLLAYESLWPDAWHFLSIFSGSAWLMTLLWLNFGLMVNRIVQRVIFVTGYYGLTQGLLSVLRLFWGNLINFMANWRALKQVLQHGDPRRVAWDKTTHDFPSVTGDTRSLRPLGQILLENQVITEEQLDTALRNRVEGLRLGGSMLMQGLISAEQLAQALAEQNGVAWESIDAWQIPSSLIAEMPASVALHYAVLPLRLENDELIVGSEDGIDPVSLAALTRKVGRKVRYVIVLRGQIVTGLRHWYARRRGHDPRAMLYNAVQHQWLTEQQAGEIWRQYVPHQFLFAEILTTLGHINRSAINVLLLRHERSSLPLGKFLVTEGVISQETLDRVLTIQRELQVSMQSLLLKAGLNTEQVAQLESENEGE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG11740-MONOMER" "exopolysaccharide secretion system outer membrane protein NfrA" ["NfrA"] "MKENNLNRVIGWSGLLLTSLLSTSALADNIGTSAEELGLSDYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVKSVTTVEELLAQQKACDAAPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRILALQSQGIFTDPQSYITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNEQSREAADLLLQRYPFQGDARVSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPSAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEKRGLGSNALYWWLHAQRYIPGQPELALNDLTRSINIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNTQAALGYALWDSGDIAQSREMLEPAHKGLPDDPALIRQLAYVNQRLDDMPATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSSIGLRSGAMSTANNNVGGAAPGKSYRSYGQLEAEYRIGRNMLLEGDLLSVYSRVFADTGENGVMMPVKNPMSGTGLRWKPLRDQIFFIAVEQQLPLNGQNGASDTMLRASASFFNGGKYSDEWHPNGSGWFAQNLYLDAAQYIRQDIQAWTADYRVSWHQKVANGQTIEPYAHVQDNGYRDKGTQGAQLGGVGVRWNIWTGETHYDAWPHKVSLGVEYQHTFKAINQRNGERNNAFLTIGVHW" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"EG11739-MONOMER" "cyclic di-3',5'-guanylate-activated glycosyltransferase" ["NfrB", "bacteriophage N4 adsorption protein"] "MDWLLDVFATWLYGLKVIAITLAVIMFISGLDDFFIDVVYWVRRIKRKLSVYRRYPRMSYRELYKPDEKPLAIMVPAWNETGVIGNMAELAATTLDYENYHIFVGTYPNDPDTQRDVDEVCARFPNVHKVVCARPGPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELRLFNYLVERKDLIQIPVYPFEREWTHFTSMTYIDEFSELHGKDVPVREALAGQVPSAGVGTCFSRRAVTALLADGDGIAFDVQSLTEDYDIGFRLKEKGMTEIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSTAVRQKSRWIIGIVFQGFKTHKWTSSLTLNYFLWRDRKGAISNFVSFLAMLVMIQLLLLLAYESLWPDAWHFLSIFSGSAWLMTLLWLNFGLMVNRIVQRVIFVTGYYGLTQGLLSVLRLFWGNLINFMANWRALKQVLQHGDPRRVAWDKTTHDFPSVTGDTRSLRPLGQILLENQVITEEQLDTALRNRVEGLRLGGSMLMQGLISAEQLAQALAEQNGVAWESIDAWQIPSSLIAEMPASVALHYAVLPLRLENDELIVGSEDGIDPVSLAALTRKVGRKVRYVIVLRGQIVTGLRHWYARRRGHDPRAMLYNAVQHQWLTEQQAGEIWRQYVPHQFLFAEILTTLGHINRSAINVLLLRHERSSLPLGKFLVTEGVISQETLDRVLTIQRELQVSMQSLLLKAGLNTEQVAQLESENEGE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11740-MONOMER" "exopolysaccharide secretion system outer membrane protein NfrA" ["NfrA"] "MKENNLNRVIGWSGLLLTSLLSTSALADNIGTSAEELGLSDYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVKSVTTVEELLAQQKACDAAPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRILALQSQGIFTDPQSYITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNEQSREAADLLLQRYPFQGDARVSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPSAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEKRGLGSNALYWWLHAQRYIPGQPELALNDLTRSINIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNTQAALGYALWDSGDIAQSREMLEPAHKGLPDDPALIRQLAYVNQRLDDMPATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSSIGLRSGAMSTANNNVGGAAPGKSYRSYGQLEAEYRIGRNMLLEGDLLSVYSRVFADTGENGVMMPVKNPMSGTGLRWKPLRDQIFFIAVEQQLPLNGQNGASDTMLRASASFFNGGKYSDEWHPNGSGWFAQNLYLDAAQYIRQDIQAWTADYRVSWHQKVANGQTIEPYAHVQDNGYRDKGTQGAQLGGVGVRWNIWTGETHYDAWPHKVSLGVEYQHTFKAINQRNGERNNAFLTIGVHW" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 0 "EG11741-MONOMER" "DNA-binding transcriptional repressor EnvR" ["YhdK", "AcrS", "EnvR"] "MAKRTKAEALKTRQELIETAIAQFAQHGVSKTTLNDIADAANVTRGAIYWHFENKTQLFNEMWLQQPSLRELIQEHLTAGLEHDPFQQLREKLIVGLQYIAKIPRQQALLKILYHKCEFNDEMLAEGVIREKMGFNPQTLREVLQACQQQGCVANNLDLDVVMIIIDGAFSGIVQNWLMNMAGYDLYKQAPALVDNVLRMFMPDENITKLIHQTNELSVM" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11743-MONOMER" "putative TonB-dependent receptor YddB" ["YddB"] "MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFGRFNGGVIDAKIKRFNADDSKVKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYYSPDFKKNFYTLSFNQELADNFGVTAGLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGLAWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTRGGLGHISQAVDNYTFKTRLDWQKFAVGNVSHQPYFGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGRLGIDNYTLYMADRISWRNVSLMPGVRYDYDNYLSNHNISPRFMTEWDIFANQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQDLKTPYNDELAMGLQQKIGKNVIARANYVYREAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFSLSFELAEPLHIRQVDINPQIVFSYIKSKGNLSLNNGYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDYKQYVDEKLDSSLTWDTRLSWTPQFLQQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"EG11743-MONOMER" "putative TonB-dependent receptor YddB" ["YddB"] "MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFGRFNGGVIDAKIKRFNADDSKVKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYYSPDFKKNFYTLSFNQELADNFGVTAGLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGLAWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTRGGLGHISQAVDNYTFKTRLDWQKFAVGNVSHQPYFGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGRLGIDNYTLYMADRISWRNVSLMPGVRYDYDNYLSNHNISPRFMTEWDIFANQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQDLKTPYNDELAMGLQQKIGKNVIARANYVYREAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFSLSFELAEPLHIRQVDINPQIVFSYIKSKGNLSLNNGYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDYKQYVDEKLDSSLTWDTRLSWTPQFLQQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 0 "EG11744-MONOMER" "periplasmic metalloprotease" ["PqqE", "PqqM", "YddC", "PqqL"] "MEIIMRNLCFLLTLVATLLLPGRLIAAALPQDEKLITGQLDNGLRYMIYPHAHPKDQVNLWLQIHTGSLQEEDNELGVAHFVEHMMFNGTKTWPGNKVIETFESMGLRFGRDVNAYTSYDETVYQVSLPTTQKQNLQQVMAIFSEWSNAATFEKLEVDAERGVITEEWRAHQDAKWRTSQARRPFLLANTRNLDREPIGLMDTVATVTPAQLRQFYQRWYQPNNMTFIVVGDIDSKEALALIKDNLSKLPANKAAENRVWPTKAENHLRFNIINDKENRVNGIALYYRLPMVQVNDEQSFIEQAEWSMLVQLFNQRLQERIQSGELKTISGGTARSVKIAPDYQSLFFRVNARDDNMQDAANALMAELATIDQHGFSAEELDDVKSTRLTWLKNAVDQQAERDLRMLTSRLASSSLNNTPFLSPEETYQLSKRLWQQITVQSLAEKWQQLRKNQDAFWEQMVNNEVAAKKALSPAAILALEKEYANKKLAAYVFPGRNLSLTVDADPQAEISSKETLAENLTSLTLSNGARVILAKSAGEEQKLQIIAVSNKGDLSFPAQQKSLIALANKAVSGSGVGELSSSSLKRWSAENSVTMSSKVSGMNTLLSVSARTNNPEPGFQLINQRITHSTINDNIWASLQNAQIQALKTLDQRPAEKFAQQMYETRYADDRTKLLQENQIAQFTAADALAADRQLFSSPADITFVIVGNVAEDKLVALITRYLGSIKHSDSPLAAGKPLTRATDNASVTVKEQNEPVAQVSQWKRYDSRTPVNLPTRMALDAFNVALAKDLRVNIREQASGAYSVSSRLSVDPQAKDISHLLAFTCQPERHDELLTLANEVMVKRLAKGISEQELNEYQQNVQRSLDIQQRSVQQLANTIVNSLIQYDDPAAWTEQEQLLKQMTVENVNTAVKQYLSHPVNTYTGVLLPK" ["CCO-PERI-BAC", "CCO-CYTOSOL"] [] 0 [] {"ZN+2": 1} 0 "EG11748-MONOMER" "recombination-promoting nuclease RpnC" ["RpnC", "YadD"] "MDAPSTTPHDAVFKQFLMHAETARDFLEIHLPVELRELCDLNTLHLESGSFIEESLKGHSTDVLYSVQMQGNPGYLHVVIEHQSKPDKKMAFRMMRYSIAAMHRHLEADHDKLPLVVPILFYQGEATPYPLSMCWFDMFYSPELARRVYNSPFPLVDITITPDDEIMQHRRIAILELLQKHIRQRDLMLLLEQLVTLIDEGYTSGSQLVAMQNYMLQRGHTEQADLFYGVLRDRETGGESMMTLAQWFEEKGIEKGIQQGRQEVSQEFAQRLLSKGMSREDVAEMANLPLAEIDKVINLI" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11749-MONOMER" "putative polysaccharide deacetylase lipoprotein YadE" ["YadE"] "MYKQAVILLLMLFTASVSAALPARYMQTIENAAVWAQIGDKMVTVGNIRAGQIIAVEPTAASYYAFNFGFGKGFIDKGHLEPVQGRQKVEDGLGDLNKPLSNQNLVTWKDTPVYNAPSAGSAPFGVLADNLRYPILHKLKDRLNQTWYQIRIGDRLAYISALDAQPDNGLSVLTYHHILRDEENTRFRHTSTTTSVRAFNNQMAWLRDRGYATLSMVQLEGYVKNKINLPARAVVITFDDGLKSVSRYAYPVLKQYGMKATAFIVTSRIKRHPQKWNPKSLQFMSVSELNEIRDVFDFQSHTHFLHRVDGYRRPILLSRSEHNILFDFARSRRALAQFNPHVWYLSYPFGGFNDNAVKAANDAGFHLAVTTMKGKVKPGDNPLLLKRLYILRTDSLETMSRLVSNQPQG" [] [] 0 [] {} 0 @@ -1194,12 +1194,12 @@ "EG11761-MONOMER" "tautomerase PptA" ["PptA", "YdcE"] "MPHIDIKCFPRELDEQQKAALAADITDVIIRHLNSKDSSISIALQQIQPESWQAIWDAEIAPQMEALIKKPGYSMNA" [] ["CCO-CYTOSOL"] 1 [] {} 1 "EG11762-MONOMER" "glutathione transferase-like protein YibF" ["YibF", "glutathione transferase-like protein possibly involved in selenium metabolism"] "MKLVGSYTSPFVRKLSILLLEKGITFEFINELPYNADNGVAQFNPLGKVPVLVTEEGECWFDSPIIAEYIELMNVAPAMLPRDPLESLRVRKIEALADGIMDAGLVSVREQARPAAQQSEDELLRQREKINRSLDVLEGYLVDGTLKTDTVNLATIAIACAVGYLNFRRVAPGWCVDRPHLVKLVENLFSRESFARTEPPKA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11763-MONOMER" "tetratricopeptide-like domain-containing protein YibG" ["YibG"] "MKACLLLFFYFSFICQLHGADVKIKQNESMMGSTAMTYDLSEEKLMKLKYKSQHGDSEASFRLYQYYCFTKNNIYKQLRFLERSASQGNVTAQFNYGVFLSDTNPTLSEYYNLNRAIYWMEFAVNNGNIDAKSKLQELKKLKRMDRRKNKENP" [] [] 0 [] {} 0 -"EG11764-MONOMER" "inner membrane protein YibH" ["YibH"] "MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLILLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFSERDIDDARQNFLAQDALVKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTYAAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTSILPVVPGGSYQAQGVLQSLTVVPGTDGVLGTIELDPNDDIDALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLDH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11764-MONOMER" "inner membrane protein YibH" ["YibH"] "MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLILLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFSERDIDDARQNFLAQDALVKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTYAAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTSILPVVPGGSYQAQGVLQSLTVVPGTDGVLGTIELDPNDDIDALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLDH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11765-MONOMER" "DUF3302 domain-containing protein YibI" ["YibI"] "MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWPFLWIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTDYSTFPEI" ["CCO-PM-BAC-NEG"] [] 0 [] {} 0 "EG11766-MONOMER" "putative RHS domain-containing protein YibJ" ["RhsJ", "YibJ"] "MQMLDRLESEILADRVSEESRRWLASCGLTVEQMKNQMDPVYTPARKIHLYHCDHRGLPLALISTEGATAWCAEYDEWGNLLSDENPHHLQQLIRLPGQQYDEESGLYYNRHRYYDPLLGRYITQDPIGLKGGWNFYQYPLNPVINVDPQGLVDINLYPESDLIHSVADEINIPGVFTIGGHGTPTSIESATRSIMTAKDLAYLIKFDGNYKDGMTVWLFSCNTGKGQNSFAS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11768-MONOMER" null ["MnmH", "SelU", "YbbB"] "MQERHTEQDYRALLIADTPIIDVRAPIEFEHGAMPAAINLPLMNNDERAAVGTCYKQQGSDAALALGHKLVAGEIRQQRMDAWRAACLQNPQGILCCARGGQRSHIVQSWLHAAGIDYPLVEGGYKALRQTAIQATIELAQKPIVLIGGCTGSGKTLLVQQQPNGVDLEGLARHRGSAFGRTLQPQLSQASFENLLAAEMLKTDARQNLRLWVLEDESRMIGSNHLPECLRERMTQAAIAVVEDPFEIRLERLNEEYFLRMHHDFTHAYGDEQGWQEYCEYLHHGLSAIKRRLGLQRYNELAARLDAALTTQLTTGSTDGHLAWLVPLLEEYYDPMYRYQLEKKAEKVVFRGEWAEVAEWVKAR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11769-MONOMER" "PF15631 family protein YbbC" ["YbbC"] "MKYSSIFSMLSFFILFACNETAVYGSDENIIFMRYVEKLHLDKYSVKNTVKTETMAIQLAEIYVRYRYGERIAEEEKPYLITELPDSWVVEGAKLPYEVAGGVFIIEINKKNGCVLNFLHSK" [] ["CCO-MEMBRANE"] 0 [] {} 0 -"EG11770-MONOMER" "putative uncharacterized protein YbbD" ["YbbD"] "MLAISSNLSKMIIFIFAIIIIVVLCVITYLYLYKDESLVSKHYINYMAIPENDGVFTWLPDFFPHVAVDISIYTNVEDDYFFLIFP*QMMMGVGLRKH*Q*GPGNKWRKSYQRMIQIQKKCGVNMVRYQGKGMV*TFFLLVKLMLRIIL*QILELDCLMLVQ" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11770-MONOMER" "putative uncharacterized protein YbbD" ["YbbD"] "MLAISSNLSKMIIFIFAIIIIVVLCVITYLYLYKDESLVSKHYINYMAIPENDGVFTWLPDFFPHVAVDISIYTNVEDDYFFLIFP*QMMMGVGLRKH*Q*GPGNKWRKSYQRMIQIQKKCGVNMVRYQGKGMV*TFFLLVKLMLRIIL*QILELDCLMLVQ" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11775-MONOMER" "ribbon-helix-helix domain-containing protein YbfE" ["YbfE", "LexA-regulated protein"] "MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAEAVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11776-MONOMER" "esterase" ["YbfF"] "MKLNIRAQTAQNQHNNSPIVLVHGLFGSLDNLGVLARDLVNDHNIIQVDMRNHGLSPRDPVMNYPAMAQDLVDTLDAQQIDKATFIGHSMGGKAVMALTALASDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPGGNSPYVSEQYRDDLLAQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLND" ["CCO-CYTOSOL"] [] 0 [] {} 0 "EG11778-MONOMER" "PF10964 domain-containing protein YbfG" ["YbfG", "YbfH"] "MREMNQLVNTEDSAWPIIQNWLKDATNHTELLPVNKDLAETALYQLQVTTKSPMGALVYGSGGLLIDNG*LRIAGSGHPRLPRDPVSWTQRPEFAGVRALPIADDVAGVIFALNGGDLGEDTGCVYYFAPDTLNWESLEVGYSEFLQWALSGDLDTFYENVRWQQWREDVIKLSATEAFTFYPFLWVQSEEARTRKVISLTELWEMQYQMKETFTQ" [] [] 0 [] {} 0 @@ -1211,16 +1211,16 @@ "EG11785-MONOMER" "putative LysR-type DNA-binding transcriptional regulator YfiE" ["YfiE"] "MDLRRFITLKTVVEEGSFLRASQKLCCTQSTVTFHIQQLEQEFSVQLFEKIGRRMCLTREGKKLLPHIYELTRVMDTLREAAKKESDPDGELRVVSGETLLSYRMPQVLQRFRQRAPKVRLSLQSLNCYVIRDALLNDEADVGVFYRVGNDDALNRRELGEQSLVLVASPQIADVDFTEPGRHNACSFIINEPQCVFRQIFESTLRQRRITVENTIELISIESIKRCVAANIGVSYLPRFAVAKELECGELIELPFGEQSQTITAMCAHHAGKAVSPAMHTFIQCVEESFVAG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11786-MONOMER" "putative methyltransferase YfiF" ["YfiF"] "MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPRDRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11790-MONOMER" "colanic acid biosynthesis fucosyltransferase WcaI" ["YefD", "WcaI"] "MKILVYGINYSPELTGIGKYTGEMVEWLAAQGHEVRVITAPPYYPQWQVGENYSAWRYKREEGAATVWRCPLYVPKQPSTLKRLLHLGSFAVSSFFPLMAQRRWKPDRIIGVVPTLFCAPGMRLLAKLSGARTVLHIQDYEVDAMLGLGLAGKGKGGKVAQLATAFERSGLHNVDNVSTISRSMMNKAIEKGVAAENVIFFPNWSEIARFQHVADADVDALRNQLDLPDNKKIILYSGNIGEKQGLENVIEAADRLRDEPLIFAIVGQGGGKARLEKMAQQRGLRNMQFFPLQSYDALPALLKMGDCHLVVQKRGAADAVLPSKLTNILAVGGNAVITAEAYTELGQLCETFPGIAVCVEPESVEALVAGIRQALLLPKHNTVAREYAERTLDKENVLRQFINDIRG" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11793-MONOMER" "DUF423 domain-containing inner membrane protein YgdD" ["YgdD"] "MTSRFMLIFAAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGLEYQAFHTLAILGLAVAMQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAFVTPVGGVSFLAGWALMLVGAIRLKRKGVSHE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11793-MONOMER" "DUF423 domain-containing inner membrane protein YgdD" ["YgdD"] "MTSRFMLIFAAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGLEYQAFHTLAILGLAVAMQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAFVTPVGGVSFLAGWALMLVGAIRLKRKGVSHE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11794-MONOMER" "23S rRNA 2'-O-ribose C2498 methyltransferase" ["YgdE", "RlmM", "ribosomal RNA large subunit methyltransferase M"] "MNKVVLLCRPGFEKECAAEITDKAGQREIFGFARVKENAGYVIYECYQPDDGDKLIRELPFSSLIFARQWFVVGELLQHLPPEDRITPIVGMLQGVVEKGGELRVEVADTNESKELLKFCRKFTVPLRAALRDAGVLANYETPKRPVVHVFFIAPGCCYTGYSYSNNNSPFYMGIPRLKFPADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQIQARQLYHDREEVTVHVRRIWAAVGGRRDER" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11796-MONOMER" "lipoate—protein ligase A" ["YjjF", "Slr", "LplA", "Slr1", "lipoyl-protein ligase A"] "MSTLRLLISDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTISTSIVLNALNALGVSAEASGRNDLVVKTVEGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVEAEIISPNKTPDLPNFAETFARQSSWEWNFGQAPAFSHLLDERFTWGGVELHFDVEKGHITRAQVFTDSLNPAPLEALAGRLQGCLYRADMLQQECEALLVDFPEQEKELRELSAWMAGAVR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "EG11798-MONOMER" "inner membrane protein HofC" ["YacD", "HopC", "HofC"] "MASKQLWRWHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLSLKRIAINSAQWRGDKSAEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVFPPLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLMRRPTWLIVRQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMRCPYWVQLLTQIQHDISNGQPIWLALKNTGEFSPLCLQLVRTGEASGSLDLMLDNLAHHHRENTMALADNLAALLEPALLIITGGIIGTLVVAMYLPIFHLGDAMSGMG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG11800-MONOMER" "hydrogenase 2 membrane subunit" ["HybB"] "MSHDPQPLGGKIISKPVMIFGPLIVICMLLIVKRLVFGLGSVSDLNGGFPWGVWIAFDLLIGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLGGLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWKVSLQRLNKVMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSLLTAFIMGFSIVIFEGSLVQAGLRGNGPDEKSLFVKLTNTISVLLAIFIVLRFGELIYRDKLSLAFAGDFYSVMFWIEVLLMLFPLVVLRVAKLRNDSRMLFLSALSALLGCATWRLTYSLVAFNPGGGYAYFPTWEELLISIGFVAIEICAYIVLIRLLPILPPLKQNDHNRHEASKA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"EG11800-MONOMER" "hydrogenase 2 membrane subunit" ["HybB"] "MSHDPQPLGGKIISKPVMIFGPLIVICMLLIVKRLVFGLGSVSDLNGGFPWGVWIAFDLLIGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLGGLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWKVSLQRLNKVMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSLLTAFIMGFSIVIFEGSLVQAGLRGNGPDEKSLFVKLTNTISVLLAIFIVLRFGELIYRDKLSLAFAGDFYSVMFWIEVLLMLFPLVVLRVAKLRNDSRMLFLSALSALLGCATWRLTYSLVAFNPGGGYAYFPTWEELLISIGFVAIEICAYIVLIRLLPILPPLKQNDHNRHEASKA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "EG11802-MONOMER" "hydrogenase 2 maturation protease" ["HybD"] "MRILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAGMELLGDMANRDHLIIADAIVSKKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLSALRFTGEFPKKLTLVGVIPESLEPHIGLTPTVEAMIEPALEQVLAALRESGVEAIPREAIHD" [] ["CCO-CYTOSOL"] 0 [] {"NI+2": 1} 0 "EG11803-MONOMER" "hydrogenase 2-specific chaperone" ["HybE"] "MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA" [] [] 0 [] {} 0 "EG11804-MONOMER" "hydrogenase maturation protein HybF" ["HybF", "protein involved with the maturation of hydrogenases 1 and 2"] "MHELSLCQSAVEIIQRQAEQHDVKRVTAVWLEIGALSCVEESAVRFSFEIVCHGTVAQGCDLHIVYKPAQAWCWDCSQVVEIHQHDAQCPLCHGERLRVDTGDSLIVKSIEVE" [] ["CCO-CYTOSOL"] 0 [] {"NI+2": 1, "ZN+2": 1} 0 "EG11805-MONOMER" "hydrogenase maturation factor HybG" ["HybG", "hydrogenase 2 accessory protein"] "MCIGVPGQVLAVGEDIHQLAQVEVCGIKRDVNIALICEGNPADLLGQWVLVHVGFAMSIIDEDEAKATLDALRQMDYDITSA" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11806-MONOMER" "DUF533 domain-containing inner membrane protein YebE" ["YebE"] "MANWLNQLQSLLGQSSSSTSSSADQGLVKLLVPGALGGLAGLLVANKSARKLLTKYGTNALLVGGGAVAGTVLWNKYKDKIRAAHQDEPQFGAQSTPLDERTARLILALVFAAKSDGHIDAKERAAIDQQLRGAGVEEQGRVLIEQAIEQPLDPQRLATGVRNEEEALEIYFLSCAAIDIDHFMERSYLNALGDALKIPQDVRDGIERDLEQQKRTLAE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11806-MONOMER" "DUF533 domain-containing inner membrane protein YebE" ["YebE"] "MANWLNQLQSLLGQSSSSTSSSADQGLVKLLVPGALGGLAGLLVANKSARKLLTKYGTNALLVGGGAVAGTVLWNKYKDKIRAAHQDEPQFGAQSTPLDERTARLILALVFAAKSDGHIDAKERAAIDQQLRGAGVEEQGRVLIEQAIEQPLDPQRLATGVRNEEEALEIYFLSCAAIDIDHFMERSYLNALGDALKIPQDVRDGIERDLEQQKRTLAE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11807-MONOMER" "secreted protein YebF" ["YebF"] "MKKRGAFLGLLLVSACASVFAANNETSKSVTFPKCEDLDAAGIAASVKRDYQQNRVARWADDQKIVGQADPVAWVSLQDIQGKDDKWSVPLTVRGKSADIHYQVSVDCKAGMAEYQRR" [] ["CCO-PERI-BAC", "CCO-EXTRACELLULAR"] 0 [] {} 0 "EG11808-MONOMER" "DNA damage-inducible protein YebG" ["YebG"] "MAVEVKYVVIREGEEKMSFTSKKEADAYDKMLDTADLLDTWLTNSPVQMEDEQREALSLWLAEQKDVLSTILKTGKLPSPQVVGAESEEEDASHAA" ["CCO-CYTOSOL"] [] 0 [] {} 0 "EG11811-MONOMER" "isovaleryl-CoA dehydrogenase and DNA-binding transcriptional repressor" ["AidB", "isovaleryl-CoA dehydrogenase and DNA-binding transcriptional repressor"] "MHWQTHTVFNQPIPLNNSNLYLSDGALCEAVTREGAGWDSDFLASIGQQLGTAESLELGRLANVNPPELLRYDAQGRRLDDVRFHPAWHLLMQALCTNRVHNLAWEEDARSGAFVARAARFMLHAQVEAGSLCPITMTFAATPLLLQMLPAPFQDWTTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFSVPQSDAHLVLAQTAGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAIGWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQAGVYDLLSEAFVEVKGQDRYFDRAVRRLQQQLRKPAEELGREITHQLFLLGCGAQMLKYASPPMAQAWCQVMLDTRGGVRLSEQIQNDLLLRATGGVCV" [] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -1230,7 +1230,7 @@ "EG11817-MONOMER" "broad specificity 5'(3')-nucleotidase and polyphosphatase" ["UmpG", "YgbC", "SurE"] "MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "EG11820-MONOMER" "protein YceI" ["YceI"] "MKKSLLGLTFASLMFSAGSAVAADYKIDKEGQHAFVNFRIQHLGYSWLYGTFKDFDGTFTFDEKNPAADKVNVTINTTSVDTNHAERDKHLRSADFLNTAKYPQATFTSTSVKKDGDELDITGDLTLNGVTKPVTLEAKLIGQGDDPWGGKRAGFEAEGKIKLKDFNIKTDLGPASQEVDLIISVEGVQQK" [] ["CCO-PERI-BAC"] 0 [] {} 0 "EG11822-MONOMER" "γ-glutamylputrescine oxidase" ["YcjA", "OrdL", "PuuB"] "MTEHTSSYYAASANKYAPFDTLNESITCDVCVVGGGYTGLSSALHLAEAGFDVVVLEASRIGFGASGRNGGQLVNSYSRDIDVIEKSYGMDTARMLGSMMFEGGEIIRERIKRYQIDCDYRPGGLFVAMNDKQLATLEEQKENWERYGNKQLELLDANAIRREVASDRYTGALLDHSGGHIHPLNLAIGEADAIRLNGGRVYELSAVTQIQHTTPAVVRTAKGQVTAKYVIVAGNAYLGDKVEPELAKRSMPCGTQVITTERLSEDLARSLIPKNYCVEDCNYLLDYYRLTADNRLLYGGGVVYGARDPDDVERLVVPKLLKTFPQLKGVKIDYRWTGNFLLTLSRMPQFGRLDTNIYYMQGYSGHGVTCTHLAGRLIAELLRGDAERFDAFANLPHYPFPGGRTLRVPFTAMGAAYYSLRDRLGV" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11824-MONOMER" "DedA family protein YghB" ["YghB"] "MAVIQDIIAALWQHDFAALADPHIVSVVYFVMFATLFLENGLLPASFLPGDSLLILAGALIAQGVMDFLPTIAILTAAASLGCWLSYIQGRWLGNTKTVKGWLAQLPAKYHQRATCMFDRHGLLALLAGRFLAFVRTLLPTMAGISGLPNRRFQFFNWLSGLLWVSVVTSFGYALSMIPFVKRHEDQVMTFLMILPIALLTAGLLGTLFVVIKKKYCNA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11824-MONOMER" "DedA family protein YghB" ["YghB"] "MAVIQDIIAALWQHDFAALADPHIVSVVYFVMFATLFLENGLLPASFLPGDSLLILAGALIAQGVMDFLPTIAILTAAASLGCWLSYIQGRWLGNTKTVKGWLAQLPAKYHQRATCMFDRHGLLALLAGRFLAFVRTLLPTMAGISGLPNRRFQFFNWLSGLLWVSVVTSFGYALSMIPFVKRHEDQVMTFLMILPIALLTAGLLGTLFVVIKKKYCNA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11825-MONOMER" "PF02567 family protein YddE" ["YddE"] "MKPQVYHVDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLHSDDSDVRIRYFTPTVEVPICGHATVAAHYVRAKVLGLGNCTIWQTSLAGKHRVTIEKHNDDYRISLEQGTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGHSKVMIPLKPEVDIDALSPDLNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHAEWAIEL" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11826-MONOMER" "protein-tyrosine kinase Etk" ["YccC", "Etk", "autophosphorylating protein tyrosine kinase"] "MTTKNMNTPPGSTQENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADTLVQVEQKQGNAILSGLSDMIPNSSPESAPEIQLLQSRMILGKTIAELNLRDIVEQKYFPIVGRGWARLTKEKPGELAISWMHIPQLNGQDQQLTLTVGENGHYTLEGEEFTVNGMVGQRLEKDGVALTIADIKAKPGTQFVLSQRTELEAINALQETFTVSERSKESGMLELTMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSAIGNVRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAVLARAMLRRGVEAPEQLEEHGISVYATIPMSEWLDKRTRLRKKNLFSNQQRHRTKNIPFLAVDNPADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRASTAYSYGYNYYGYSYSEKE" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11828-MONOMER" "molybdopterin-guanine dinucleotide biosynthesis adaptor protein" ["YihC", "MobB"] "MAGKTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPEELVIDRHVIAVASDVPLNLDVALLDINDVEGLADFVVEWMQKQNG" [] ["CCO-CYTOSOL"] 1 [] {} 1 @@ -1238,7 +1238,7 @@ "EG11830-MONOMER" "DUF1040 domain-containing protein YihD" ["YihD"] "MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSAKDAVIPGLQKDYEEDFKTALLRARGVIKE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11831-MONOMER" "stress response kinase A" ["SrkA", "OrfA", "YihE", "serine/threonine protein kinase"] "MNNSAFTFQTLHPDTIMDALFEHGIRVDSGLTPLNSYENRVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWRDGPMFVDLDDARNGPAVQDLWMLLNGDKAEQRMQLETIIEAYEEFSEFDTAEIGLIEPLRAMRLVYYLAWLMRRWADPAFPKNFPWLTGEDYWLRQTATFIEQAKVLQEPPLQLTPMY" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "EG11832-MONOMER" "DUF945 domain-containing protein YihF" ["YihF", "putative GTP-binding protein"] "MIRKSATGVIVALAVIWGGGTWYTGTQIQPGVEKFIKDFNDAKKKGEHAYDMTLSYQNFDKGFFNSRFQMQMTFDNGAPDLNIKPGQKVVFDVDVEHGPLPITMLMHGNVIPALAAAKVNLVNNELTQPLFIAAKNKSPVEATLRFAFGGSFSTTLDVAPAEYGKFSFGEGQFTFNGDGSSLSNLDIEGKVEDIVLQLSPMNKVTAKSFTIDSLARLEEKKFPVGESESKFNQINIINHGEDVAQIDAFVAKTRLDRVKDKDYINVNLTYELDKLTKGNQQLGSGEWSLIAESIDPSAVRQFIIQYNIAMQKQLAAHPELANDEVALQEVNAALFKEYLPLLQKSEPTIKQPVRWKNALGELNANLDISIADPAKSSSSTNKDIKSLNFDVKLPLNVVTETAKQLNLSEGMDAEKAQKQADKQISGMMTLGQMFQLITIDNNTASLQLRYTPGKVVFNGQEMSEEEFMSRAGRFVH" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG11833-MONOMER" "1-acylglycerol-3-phosphate O-acyltransferase YihG" ["YihG"] "MANLLNKFIMTRILAAITLLLSIVLTILVTIFCSVPIIIAGIVKLLLPVPVIWRKVSRFCDFMMYCWCEGLAVLLHLNPHLQWEVHGLEGLSKKNWYLLICNHRSWADIVVLCVLFRKHIPMNKYFLKQQLAWVPFLGLACWSLDMPFMKRYSRAYLLRHPERRGKDVETTRRSCEKFRLHPTTIVNFVEGSRFTQEKHQQTHSTFQNLLPPKAAGIAMALNVLGKQFDKLLNVTLCYPDNNRQPFFDMLSGKLTRIVVHVDLQPIADELHGDYINDKSFKRHFQQWLNSLWQEKDRLLTSLMSSQRQNK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11833-MONOMER" "1-acylglycerol-3-phosphate O-acyltransferase YihG" ["YihG"] "MANLLNKFIMTRILAAITLLLSIVLTILVTIFCSVPIIIAGIVKLLLPVPVIWRKVSRFCDFMMYCWCEGLAVLLHLNPHLQWEVHGLEGLSKKNWYLLICNHRSWADIVVLCVLFRKHIPMNKYFLKQQLAWVPFLGLACWSLDMPFMKRYSRAYLLRHPERRGKDVETTRRSCEKFRLHPTTIVNFVEGSRFTQEKHQQTHSTFQNLLPPKAAGIAMALNVLGKQFDKLLNVTLCYPDNNRQPFFDMLSGKLTRIVVHVDLQPIADELHGDYINDKSFKRHFQQWLNSLWQEKDRLLTSLMSSQRQNK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11835-MONOMER" "Der GTPase-activating protein YihI" ["YihI", "GAP-like protein that activates GTPase activity of Der"] "MKPSSSNSRSKGHAKARRKTREELDQEARDRKRQKKRRGHAPGSRAAGGNTTSGSKGQNAPKDPRIGSKTPIPLGVTEKVTKQHKPKSEKPMLSPQAELELLETDERLDALLERLEAGETLSAEEQSWVDAKLDRIDELMQKLGLSYDDDEEEEEDEKQEDMMRLLRGN" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11837-MONOMER" "50S ribosomal subunit assembly factor BipA" ["YihK", "BipA", "TypA", "ribosome-dependent GTPase, ribosome assembly factor"] "MIEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPPIRMTLEQALEFIDDDELVEVTPTSIRIRKRHLTENDRRRANRAPKDD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11838-MONOMER" "putative DNA-binding transcriptional regulator YihL" ["YihL"] "MAENQSTVENAKEKLDRWLKDGITTPGGKLPSERELGELLGIKRMTLRQALLNLEAESKIFRKDRKGWFVTQPRFNYSPELSASFQRAAIEQGREPSWGFTEKNRTSDIPETLAPLIAVTPSTELYRITGWGALEGHKVFYHETYINPEVAPGFIEQLENHSFSAVWEKCYQKETVVKKLIFKPVRMPGDISKYLGGSAGMPAILIEKHRADQQGNIVQIDIEYWRFEAVDLIINL" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -1251,7 +1251,7 @@ "EG11848-MONOMER" "6-deoxy-6-sulfofructose kinase" ["SquV", "YihV"] "MIRVACVGITVMDRIYYVEGLPTESGKYVARNYTEVGGGPAATAAVAAARLGAQVDFIGRVGDDDTGNSLLAELESWGVNTRYTKRYNQAKSSQSAIMVDTKGERIIINYPSPDLLPDAEWLEEIDFSQWDVVLADVRWHDGAKKAFTLARQAGVMTVLDGDITPQDISELVALSDHAAFSEPGLARLTGVKEMASALKQAQTLTNGHVYVTQGSAGCDWLENGGRQHQPAFKVDVVDTTGAGDVFHGALAVALATSGDLAESVRFASGVAALKCTRPGGRAGIPDCDQTRSFLSLFV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11849-MONOMER" "DNA-binding transcriptional dual regulator CsqR" ["CsqR", "YihW"] "MSLTELTGNPRHDQLLMLIAERGYMNIDELANLLDVSTQTVRRDIRKLSEQGLITRHHGGAGRASSVVNTAFEQREVSQTEEKKAIAEAVADYIPDGSTIFITIGTTVEHVARALLNHNHLRIITNSLRVAHILYHNPRFEVMVPGGTLRSHNSGIIGPSAASFVADFRADYLVTSVGAIESDGALMEFDVNEANVVKTMMAHARNILLVADHTKYHASAAVEIGNVAQVTALFTDELPPAALKSRLQDSQIEIILPQEDA" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11850-MONOMER" "α-D-glucose-1-phosphate phosphatase YihX" ["YihX", "HAD4"] "MLYIFDLGNVIVDIDFNRVLGAWSDLTRIPLASLKKSFHMGEAFHQHERGEISDEAFAEALCHEMALPLSYEQFSHGWQAVFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILVKDKTTIPDYFAKVLC" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 -"EG11851-MONOMER" "PF03631 family membrane protein YihY" ["Rbn", "YihY"] "MLKTIQDKARHRTRPLWAWLKLLWQRIDEDNMTTLAGNLAYVSLLSLVPLVAVVFALFAAFPMFSDVSIQLRHFIFANFLPATGDVIQRYIEQFVANSNKMTAVGACGLIVTALLLMYSIDSALNTIWRSKRARPKIYSFAVYWMILTLGPLLAGASLAISSYLLSLRWASDLNTVIDNVLRIFPLLLSWISFWLLYSIVPTIRVPNRDAIVGAFVAALLFEAGKKGFALYITMFPSYQLIYGVLAVIPILFVWVYWTWCIVLLGAEITVTLGEYRKLKQAAEQEEDDEP" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11851-MONOMER" "PF03631 family membrane protein YihY" ["Rbn", "YihY"] "MLKTIQDKARHRTRPLWAWLKLLWQRIDEDNMTTLAGNLAYVSLLSLVPLVAVVFALFAAFPMFSDVSIQLRHFIFANFLPATGDVIQRYIEQFVANSNKMTAVGACGLIVTALLLMYSIDSALNTIWRSKRARPKIYSFAVYWMILTLGPLLAGASLAISSYLLSLRWASDLNTVIDNVLRIFPLLLSWISFWLLYSIVPTIRVPNRDAIVGAFVAALLFEAGKKGFALYITMFPSYQLIYGVLAVIPILFVWVYWTWCIVLLGAEITVTLGEYRKLKQAAEQEEDDEP" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11852-MONOMER" "D-aminoacyl-tRNA deacylase" ["Dtd", "YihZ", "D-Tyr-tRNATyr deacylase"] "MIALIQRVTRASVTVEGEVTGEIGAGLLVLLGVEKDDDEQKANRLCERVLGYRIFSDAEGKMNLNVQQAGGSVLVVSQFTLAADTERGMRPSFSKGASPDRAEALYDYFVERCRQQEMNTQTGRFAADMQVSLVNDGPVTFWLQV" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11853-MONOMER" "putative fatty acid biosynthesis enzyme FabY" ["FabY", "YiiD", "putative acetyltransferase YiiD"] "MSQLPGLSRETRESIAMYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGSERDAWDAMAHHQMVVDEQGNLVAVGRLYINADNEASIRFMAVHPDVQDKGLGTLMAMTLESVARQEGVKRVTCSAREDAVEFFAKLGFVNQGEITTPTTTPIRHFLMIKPVATLDDILHRGDWCAQLQQAWYEHIPLSEKMGVRIQQYTGQKFITTMPETGNQNPHHTLFAGSLFSLATLTGWGLIWLMLRERHLGGTIILADAHIRYSKPISGKPHAVADLGALSGDLDRLARGRKARVQMQVEIFGDETPGAVFEGTYIVLPAKPFGPYEEGGNEEE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11854-MONOMER" "putative DNA-binding transcriptional regulator YiiE" ["YiiE"] "MAMNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVGVDDQCKEHKE" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -1272,14 +1272,14 @@ "EG11882-MONOMER" "putative lipid-binding hydrolase YiiX" ["YiiX"] "MKNRLLILSLLVSVPAFAWQPQTGDIIFQISRSSQSKAIQLATHTDYSHTGMLVIRNKKPYVFEAVGPVKYTPLKQWIAHGEKGKYVVRRVEGGLSVEQQQKLAQTAKRYLGKPYDFSFSWSDDRQYCSEVVWKVYQNALGMRVGEQQKLKEFDLSSPQVQAKLKERYGKNIPLEETVVSPQAVFDAPQLTTVAKEWPLFSW" [] [] 0 [] {} 0 "EG11884-MONOMER" "tellurite methyltransferase" ["TehB"] "MIIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWERVKYNEDVGELHRTDANGNRIKLRFATMLARKK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11885-MONOMER" "osmoregulated periplasmic glucans biosynthesis protein G" ["MdoA", "MdoG", "OpgG", "OPG biosynthesis protein OpgG"] "MMKMRWLSAAVMLTLYTSSSWAFSIDDVAKQAQSLAGKGYETPKSNLPSVFRDMKYADYQQIQFNHDKAYWNNLKTPFKLEFYHQGMYFDTPVKINEVTATAVKRIKYSPDYFTFGDVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVIGAGQVYGLSARGLAIDTALPSGEEFPRFKEFWIERPKPTDKRLTIYALLDSPRATGAYKFVVMPGRDTVVDVQSKIYLRDKVGKLGVAPLTSMFLFGPNQPSPANNYRPELHDSNGLSIHAGNGEWIWRPLNNPKHLAVSSFSMENPQGFGLLQRGRDFSRFEDLDDRYDLRPSAWVTPKGEWGKGSVELVEIPTNDETNDNIVAYWTPDQLPEPGKEMNFKYTITFSRDEDKLHAPDNAWVQQTRRSTGDVKQSNLIRQPDGTIAFVVDFTGAEMKKLPEDTPVTAQTSIGDNGEIVESTVRYNPVTKGWRLVMRVKVKDAKKTTEMRAALVNADQTLSETWSYQLPANE" [] ["CCO-PERI-BAC"] 0 [] {} 0 -"EG11886-MONOMER" "osmoregulated periplasmic glucans biosynthesis protein H" ["OpgH", "MdoA", "MdoH", "OPG glycosyltransferase", "OPG biosynthesis protein OpgH"] "MNKTTEYIDAMPIAASEKAALPKTDIRAVHQALDAEHRTWAREDDSPQGSVKARLEQAWPDSLADGQLIKDDEGRDQLKAMPEAKRSSMFPDPWRTNPVGRFWDRLRGRDVTPRYLARLTKEEQESEQKWRTVGTIRRYILLILTLAQTVVATWYMKTILPYQGWALINPMDMVGQDLWVSFMQLLPYMLQTGILILFAVLFCWVSAGFWTALMGFLQLLIGRDKYSISASTVGDEPLNPEHRTALIMPICNEDVNRVFAGLRATWESVKATGNAKHFDVYILSDSYNPDICVAEQKAWMELIAEVGGEGQIFYRRRRRRVKRKSGNIDDFCRRWGSQYSYMVVLDADSVMTGDCLCGLVRLMEANPNAGIIQSSPKASGMDTLYARCQQFATRVYGPLFTAGLHFWQLGESHYWGHNAIIRVKPFIEHCALAPLPGEGSFAGSILSHDFVEAALMRRAGWGVWIAYDLPGSYEELPPNLLDELKRDRRWCHGNLMNFRLFLVKGMHPVHRAVFLTGVMSYLSAPLWFMFLALSTALQVVHALTEPQYFLQPRQLFPVWPQWRPELAIALFASTMVLLFLPKLLSILLIWCKGTKEYGGFWRVTLSLLLEVLFSVLLAPVRMLFHTVFVVSAFLGWEVVWNSPQRDDDSTSWGEAFKRHGSQLLLGLVWAVGMAWLDLRFLFWLAPIVFSLILSPFVSVISSRATVGLRTKRWKLFLIPEEYSPPQVLVDTDRFLEMNRQRSLDDGFMHAVFNPSFNALATAMATARHRASKVLEIARDRHVEQALNETPEKLNRDRRLVLLSDPVTMARLHFRVWNSPERYSSWVSYYEGIKLNPLALRKPDAASQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11886-MONOMER" "osmoregulated periplasmic glucans biosynthesis protein H" ["OpgH", "MdoA", "MdoH", "OPG glycosyltransferase", "OPG biosynthesis protein OpgH"] "MNKTTEYIDAMPIAASEKAALPKTDIRAVHQALDAEHRTWAREDDSPQGSVKARLEQAWPDSLADGQLIKDDEGRDQLKAMPEAKRSSMFPDPWRTNPVGRFWDRLRGRDVTPRYLARLTKEEQESEQKWRTVGTIRRYILLILTLAQTVVATWYMKTILPYQGWALINPMDMVGQDLWVSFMQLLPYMLQTGILILFAVLFCWVSAGFWTALMGFLQLLIGRDKYSISASTVGDEPLNPEHRTALIMPICNEDVNRVFAGLRATWESVKATGNAKHFDVYILSDSYNPDICVAEQKAWMELIAEVGGEGQIFYRRRRRRVKRKSGNIDDFCRRWGSQYSYMVVLDADSVMTGDCLCGLVRLMEANPNAGIIQSSPKASGMDTLYARCQQFATRVYGPLFTAGLHFWQLGESHYWGHNAIIRVKPFIEHCALAPLPGEGSFAGSILSHDFVEAALMRRAGWGVWIAYDLPGSYEELPPNLLDELKRDRRWCHGNLMNFRLFLVKGMHPVHRAVFLTGVMSYLSAPLWFMFLALSTALQVVHALTEPQYFLQPRQLFPVWPQWRPELAIALFASTMVLLFLPKLLSILLIWCKGTKEYGGFWRVTLSLLLEVLFSVLLAPVRMLFHTVFVVSAFLGWEVVWNSPQRDDDSTSWGEAFKRHGSQLLLGLVWAVGMAWLDLRFLFWLAPIVFSLILSPFVSVISSRATVGLRTKRWKLFLIPEEYSPPQVLVDTDRFLEMNRQRSLDDGFMHAVFNPSFNALATAMATARHRASKVLEIARDRHVEQALNETPEKLNRDRRLVLLSDPVTMARLHFRVWNSPERYSSWVSYYEGIKLNPLALRKPDAASQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11888-MONOMER" "tRNA (cytidine/uridine-2'-O)-ribose methyltransferase" ["TrmL", "YibK"] "MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQLGYPGAVLRD" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11889-MONOMER" "putative DNA-binding transcriptional regulator DctR" ["DctR", "YhiF"] "MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQIERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11890-MONOMER" "starvation lipoprotein" ["Slp"] "MNMTKGALILSLSFLLAACSSIPQNIKGNNQPDIQKSFVAVHNQPGLYVGQQARFGGKVINVINGKTDTLLEISVLPLDSYAKPDIEANYQGRLLARQSGFLDPVNYRNHFVTILGTIQGEQPGFINKVPYNFLEVNMQGIQVWHLREVVNTTYNLWDYGYGAFWPEPGWGAPYYTNAVSQVTPELVK" ["CCO-MEMBRANE"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 -"EG11891-MONOMER" "putative transporter YeeA" ["YeeA"] "MRADKSLSPFEIRVYRHYRIVHGTRVALAFLLTFLIIRLFTIPESTWPLVTMVVIMGPISFWGNVVPRAFERIGGTVLGSILGLIALQLELISLPLMLVWCAAAMFLCGWLALGKKPYQGLLIGVTLAIVVGSPTGEIDTALWRSGDVILGSLLAMLFTGIWPQRAFIHWRIQLAKSLTEYNRVYQSAFSPNLLERPRLESHLQKLLTDAVKMRGLIAPASKETRIPKSIYEGIQTINRNLVCMLELQINAYWATRPSHFVLLNAQKLRDTQHMMQQILLSLVHALYEGNPQPVFANTEKLNDAVEELRQLLNNHHDLKVVETPIYGYVWLNMETAHQLELLSNLICRALRK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11891-MONOMER" "putative transporter YeeA" ["YeeA"] "MRADKSLSPFEIRVYRHYRIVHGTRVALAFLLTFLIIRLFTIPESTWPLVTMVVIMGPISFWGNVVPRAFERIGGTVLGSILGLIALQLELISLPLMLVWCAAAMFLCGWLALGKKPYQGLLIGVTLAIVVGSPTGEIDTALWRSGDVILGSLLAMLFTGIWPQRAFIHWRIQLAKSLTEYNRVYQSAFSPNLLERPRLESHLQKLLTDAVKMRGLIAPASKETRIPKSIYEGIQTINRNLVCMLELQINAYWATRPSHFVLLNAQKLRDTQHMMQQILLSLVHALYEGNPQPVFANTEKLNDAVEELRQLLNNHHDLKVVETPIYGYVWLNMETAHQLELLSNLICRALRK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11892-MONOMER" "DNA gyrase inhibitor" ["Dgi", "YeeB", "GyrI", "SbmC"] "MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11894-MONOMER" "putative thiosulfate sulfurtransferase" ["YeeD", "TsuB"] "MVIKKLDVVTQVCPFPLIEAKAALAEMVSGDELVIEFDCTQATEAIPQWAAEEGHAITDYQQIGDAAWSITVQKA" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11895-MONOMER" "thiosulfate transporter" ["YeeE", "TsuA"] "MFSMILSGLICGALLGFVMQRGRFCLTGGFRDMYIVKNNRMFYALLIAISVQSVGVFALIQAGLLTYEAGAFPWLGTVIGGYIFGLGIVLAGGCATGTWYRAGEGLIGSWIALFTYMVMSAVMRSPHASGLNQTLQHYSTEHNSIAETFNLSVWPLVAVLLVITLWVVMKELKKPKLKVATLPPRRTGIAHILFEKRWHPFVTAVLIGLIALLAWPLSEATGRMFGLGITSPTANILQFLVAGDMKYINWGVFLVLGIFVGSFIAAKASREFRVRAADAQTTLRSGLGGVLMGFGASIAGGCSIGNGLVMTAMMTWQGWIGLVFMILGVWTASWLVYVRPQRKARLATAAAN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11895-MONOMER" "thiosulfate transporter" ["YeeE", "TsuA"] "MFSMILSGLICGALLGFVMQRGRFCLTGGFRDMYIVKNNRMFYALLIAISVQSVGVFALIQAGLLTYEAGAFPWLGTVIGGYIFGLGIVLAGGCATGTWYRAGEGLIGSWIALFTYMVMSAVMRSPHASGLNQTLQHYSTEHNSIAETFNLSVWPLVAVLLVITLWVVMKELKKPKLKVATLPPRRTGIAHILFEKRWHPFVTAVLIGLIALLAWPLSEATGRMFGLGITSPTANILQFLVAGDMKYINWGVFLVLGIFVGSFIAAKASREFRVRAADAQTTLRSGLGGVLMGFGASIAGGCSIGNGLVMTAMMTWQGWIGLVFMILGVWTASWLVYVRPQRKARLATAAAN" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11899-MONOMER" "Rac prophage; recombinase RecT" ["RecT", "recombinase, DNA renaturation"] "MTKQPPIAKADLQKTQGNRAPAAVKNSDVISFINQPSMKEQLAAALPRHMTAERMIRIATTEIRKVPALGNCDTMSFVSAIVQCSQLGLEPGSALGHAYLLPFGNKNEKSGKKNVQLIIGYRGMIDLARRSGQIASLSARVVREGDEFSFEFGLDEKLIHRPGENEDAPVTHVYAVARLKDGGTQFEVMTRKQIELVRSLSKAGNNGPWVTHWEEMAKKTAIRRLFKYLPVSIEIQRAVSMDEKEPLTIDPADSSVLTGEYSVIDNSEE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11900-MONOMER" "Rac prophage; endodeoxyribonuclease toxin RalR" ["RalR", "YdaB", "Lar", "Rac prophage, DNA endonuclease toxin of the RalRA toxin-antitoxin system, restriction alleviation and modification enhancement"] "MRYDNVKPCPFCGCPSVTVKAISGYYRAKCNGCESRTGYGGSEKEALERWNKRTTGNNNGGVHV" [] [] 0 [] {} 0 "EG11901-MONOMER" "Rac prophage; double-strand break reduction protein" ["YdaC", "RcbA"] "MYKITATIEKEGGTPTNWTRYSKSKLTKSECEKMLSGKKEAGVSREQKVKLINFNCEKLQSSRIALYSN" [] [] 0 [] {} 0 @@ -1289,9 +1289,9 @@ "EG11906-MONOMER" "putative PTS multiphosphoryl transfer protein PtsA" ["FrwA", "YijH", "PtsA", "Enzyme IAni", "TTP", "triphosphoryl transfer protein"] "MALIVEFICELPNGVHARPASHVETLCNTFSSQIEWHNLRTDRKGNAKSALALIGTDTLAGDNCQLLISGADEQEAHQRLSQWLRDEFPHCDAPLAEVKSDELEPLPVSLTNLNPQIIRARTVCSGSAGGILTPISSLDLNALGNLPAAKGVDAEQSALENGLTLVLKNIEFRLLDSDGATSAILEAHRSLAGDTSLREHLLAGVSAGLSCAEAIVASANHFCEEFSRSSSSYLQERALDVRDVCFQLLQQIYGEQRFPAPGKLTQPAICMADELTPSQFLELDKNHLKGLLLKSGGTTSHTVILARSFNIPTLVGVDIDALTPWQQQTIYIDGNAGAIVVEPGEAVARYYQQEARVQDALREQQRVWLTQQARTADGIRIEIAANIAHSVEAQAAFGNGAEGVGLFRTEMLYMDRTSAPGESELYNIFCQALESANGRSIIVRTMDIGGDKPVDYLNIPAEANPFLGYRAVRIYEEYASLFTTQLRSILRASAHGSLKIMIPMISSMEEILWVKEKLAEAKQQLRNEHIPFDEKIQLGIMLEVPSVMFIIDQCCEEIDFFSIGSNDLTQYLLAVDRDNAKVTRHYNSLNPAFLRALDYAVQAVHRQGKWIGLCGELGAKGSVLPLLVGLGLDELSMSAPSIPAAKARMAQLDSRECRKLLNQAMACRTSLEVEHLLAQFRMTQQDAPLVTAECITLESDWRSKEEVLKGMTDNLLLAGRCRYPRKLEADLWAREAVFSTGLGFSFAIPHSKSEHIEQSTISVARLQAPVRWGDDEAQFIIMLTLNKHAAGDQHMRIFSRLARRIMHEEFRNALVNAASADAIASLLQHELEL" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "EG11910-MONOMER" "putative formate acetyltransferase 2" ["YijL", "PflD", "pyruvate formate-lyase 2"] "MTNRISRLKTALFANTREISLERALLYTASHRQTEGEPVILRRAKATAYILEHVEISIRDEELIAGNRTVKPRAGIMSPEMDPYWLLKELDQFPTRPQDRFAISEEDKRIYREELFPYWEKRSMKDFINGQMTDEVKAATNTQIFSINQTDKGQGHIIIDYPRLLNHGLGELVAQMQQHCQQQPENHFYQAALLLLEASQKHILRYAELAETMAANCTDAQRREELLTIAEISRHNAQHKPQTFWQACQLFWYMNIILQYESNASSLSLGRFDQYMLPFYQTSLTQGEDAAFLKELLESLWVKCNDIVLLRSTSSARYFAGFPTGYTALLGGLTENGRSAVNVLSFLCLDAYQSVQLPQPNLGVRTNALIDTPFLMKTAETIRFGTGIPQIFNDEVVVPAFLNRGVSLEDARDYSVVGCVELSIPGRTYGLHDIAMFNLLKVMEICLHENEGNAALTYEGLLEQIRAKISHYITLMVEGSNICDIGHRDWAPVPLLSSFISDCLEKGRDITDGGARYNFSGVQGIGIANLSDSLHALKGMVFEQQRLSFDELLSVLKANFATPEGEKVRARLINRFEKYGNDIDEVDNISAELLRHYCKEVEKYQNPRGGYFTPGSYTVSAHVPLGSVVGATPDGRFAGEQLADGGLSPMLGQDAQGPTAVLKSVSKLDNTLLSNGTLLNVKFTPATLEGEAGLRKLADFLRAFTQLKLQHIQFNVVNADTLREAQQRPQDYAGLVVRVAGYSAFFVELSKEIQDDIIRRTAHQL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11911-MONOMER" "putative pyruvate formate-lyase 2 activating enzyme PflC" ["YijM", "PflC"] "MTSSAGQRISCNVVETRRDDVARIFNIQRYSLNDGEGIRTVVFFKGCPHLCPWCANPESISGKIQTVRREAKCLHCAKCLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIPLNIRQIHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGLQVTVGG" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 0 -"EG11912-MONOMER" "putative PTS enzyme IIB component FrwD" ["YijN", "FrwD", "EIIB'frw", "Enzyme IIB'frw"] "MAYLVAVTACVSGVAHTYMAAERLEKLCLLEKWGVSIETQGALGTENRLADEDIRRADVALLITDIELAGAERFEHCRYVQCSIYAFLREPQRVMSAVRKVLSAPQQTHLILE" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 +"EG11912-MONOMER" "putative PTS enzyme IIB component FrwD" ["YijN", "FrwD", "EIIB'frw", "Enzyme IIB'frw"] "MAYLVAVTACVSGVAHTYMAAERLEKLCLLEKWGVSIETQGALGTENRLADEDIRRADVALLITDIELAGAERFEHCRYVQCSIYAFLREPQRVMSAVRKVLSAPQQTHLILE" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11913-MONOMER" "putative DNA-binding transcriptional regulator YijO" ["YijO"] "MYHDVSYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLEIVLEGEFVDTGAGATLVPGDVLYVPAGGWNFPQWQAPATTFSVLFGKQQLGFSVVQWDGKQYQNLAKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQIQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEVAHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11914-MONOMER" "phosphoethanolamine transferase EptC" ["EptC", "YijP"] "MHSTEVQAKPLFSWKALGWALLYFWFFSTLLQAIIYISGYSGTNGIRDSLLFSSLWLIPVFLFPKRIKIIAAVIGVVLWAASLAALCYYVIYGQEFSQSVLFVMFETNTNEASEYLSQYFSLKIVLIALAYTAVAVLLWTRLRPVYIPKPWRYVVSFALLYGLILHPIAMNTFIKNKPFEKTLDNLASRMEPAAPWQFLTGYYQYRQQLNSLTKLLNENNALPPLANFKDESGNEPRTLVLVIGESTQRGRMSLYGYPRETTPELDALHKTDPNLTVFNNVVTSRPYTIEILQQALTFANEKNPDLYLTQPSLMNMMKQAGYKTFWITNQQTMTARNTMLTVFSRQTDKQYYMNQQRTQSAREYDTNVLKPFQEVLNDPAPKKLIIVHLLGTHIKYKYRYPENQGKFDGNTDHVPPGLNAEELESYNDYDNANLYNDHVVASLIKDFKAANPNGFLVYFSDHGEEVYDTPPHKTQGRNEDNPTRHMYTIPFLLWTSEKWQATHPRDFSQDVDRKYSLAELIHTWSDLAGLSYDGYDPTRSVVNPQFKETTRWIGNPYKKNALIDYDTLPYGDQVGNQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11914-MONOMER" "phosphoethanolamine transferase EptC" ["EptC", "YijP"] "MHSTEVQAKPLFSWKALGWALLYFWFFSTLLQAIIYISGYSGTNGIRDSLLFSSLWLIPVFLFPKRIKIIAAVIGVVLWAASLAALCYYVIYGQEFSQSVLFVMFETNTNEASEYLSQYFSLKIVLIALAYTAVAVLLWTRLRPVYIPKPWRYVVSFALLYGLILHPIAMNTFIKNKPFEKTLDNLASRMEPAAPWQFLTGYYQYRQQLNSLTKLLNENNALPPLANFKDESGNEPRTLVLVIGESTQRGRMSLYGYPRETTPELDALHKTDPNLTVFNNVVTSRPYTIEILQQALTFANEKNPDLYLTQPSLMNMMKQAGYKTFWITNQQTMTARNTMLTVFSRQTDKQYYMNQQRTQSAREYDTNVLKPFQEVLNDPAPKKLIIVHLLGTHIKYKYRYPENQGKFDGNTDHVPPGLNAEELESYNDYDNANLYNDHVVASLIKDFKAANPNGFLVYFSDHGEEVYDTPPHKTQGRNEDNPTRHMYTIPFLLWTSEKWQATHPRDFSQDVDRKYSLAELIHTWSDLAGLSYDGYDPTRSVVNPQFKETTRWIGNPYKKNALIDYDTLPYGDQVGNQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11915-MONOMER" "endonuclease V" ["YjaF", "Nfi", "EndoV", "deoxyinosine 3'-endonuclease"] "MDLASLRAQQIELASSVIREDRLDKDPPDLIAGADVGFEQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQKPDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKKRLCGKFEPLSSEPGALAPLMDKGEQLAWVWRSKARCNPLFIATGHRVSVDSALAWVQRCMKGYRLPEPTRWADAVASERPAFVRYTANQP" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "EG11916-MONOMER" "DUF416 domain-containing protein YjaG" ["YjaG"] "MLQNPIHLRLERLESWQHVTFMACLCERMYPNYAMFCQQTGFGDGQIYRRILDLIWETLTVKDAKVNFDSQLEKFEEAIPSADDFDLYGVYPAIDACVALSELVHSRLSGETLEHAVEVSKTSITTVAMLEMTQAGREMSDEELKENPAVEQEWDIQWEIFRLLAECEERDIELIKGLRADLREAGESNIGIIFQQ" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11917-MONOMER" "DUF1481 domain-containing protein YjaH" ["YjaH"] "MNSFNEGVVSPLLSFWRRSLMLAGALLLTACSHNSSLPPFTASGFAEDQGAVRIWRKDSGDNVHLLAVFSPWRSGDTTTREYRWQGDNLTLININVYSKPPVNIRARFDDRGDLSFMQRESDGEKQQLSNDQIDLYRYRADQIRQISDALRQGRVVLRQGRWHAMEQTVTTCEGQTIKPDLDSQAIAHIERRQSRSSVDVSVAWLEAPEGSQLLLVANSDFCRWQPNEKTF" [] [] 0 [] {} 0 @@ -1301,20 +1301,20 @@ "EG11921-MONOMER" "23S rRNA pseudouridine2604 and tRNATyr pseudouridine35 synthase" ["RluF", "YjbC", "ribosomal large subunit pseudouridine synthase F"] "MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11922-MONOMER" "DUF3811 domain-containing protein YjbD" ["YjbD"] "MALPRITQKEMTEREQRELKTLLDRARIAHGRVLTNSETNSIKKDYIDKLMVEREAEAKKARQLKKKQAYKPDPEASFSWSANTSTRGRR" [] [] 0 [] {} 0 "EG11923-MONOMER" "uncharacterized protein YjbE" ["YjbE"] "MKKVLYGIFAISALAATSAWAAPVQVGEAAGSAATSVSAGSSSATSVSTVSSAVGVALAATGGGDGSNTGTTTTTTTSTQ" [] ["CCO-EXTRACELLULAR"] 0 [] {} 0 -"EG11924-MONOMER" "lipoprotein YjbF" ["YjbF"] "MKRPALILICLLLQACSATTKELGNSLWDSLFGTPGVQLTDDDIQNMPYASQYMQLNGGPQLFVVLAFAEDGQQKWVTQDQATLVTQHGRLVKTLLGGDNLIEVNNLAADPLIKPAQIVDGASWTRTMGWTEYQQVRYATARSVFKWDGTDTVKVGSDETPVRVLDEEVSTDQARWHNRYWIDSEGQIRQSEQYLGADYFPVKTTLIKAAKQ" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 0 +"EG11924-MONOMER" "lipoprotein YjbF" ["YjbF"] "MKRPALILICLLLQACSATTKELGNSLWDSLFGTPGVQLTDDDIQNMPYASQYMQLNGGPQLFVVLAFAEDGQQKWVTQDQATLVTQHGRLVKTLLGGDNLIEVNNLAADPLIKPAQIVDGASWTRTMGWTEYQQVRYATARSVFKWDGTDTVKVGSDETPVRVLDEEVSTDQARWHNRYWIDSEGQIRQSEQYLGADYFPVKTTLIKAAKQ" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 "EG11925-MONOMER" "capsule biosynthesis GfcC family protein YjbG" ["YjbG"] "MIKQTIVALLLSVGASSVFAAGTVKVFSNGSSEAKTLTGAEHLIDLVGQPRLANSWWPGAVISEELATAAALRQQQALLTRLAEQGADSSADDAAAINALRQQIQALKVTGRQKINLDPDIVRVAERGNPPLQGNYTLWVGPPPSTVTLFGLISRPGKQPFTPGRDVASYLSDQSLLSGADRSYAWVVYPDGRTQKAPVAYWNKRHVEPMPGSIIYVGLADSVWSETPDALNADILQTLTQRIPQ" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG11926-MONOMER" "putative lipoprotein YjbH" ["YjbH"] "MKKRHLLSLLALGISTACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDNDQYRYYSASVQLFPWLETTLRYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWLPQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGYLGTSGNVKNPLCSASDKYCYRDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSKFNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPSYNDNARPQYQPQPQDAILQHSVVANQLTLLKYNAGLADPQIQAKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPDGIKTIRITENRLNMPQVTTETDVASLKNHLAGEPLGHETTLAQKRVEPVVPQSTEQGWYIDKSRFDFHIDPVLNQSVGGPENFYMYQLGVMGTADLWLTDHLLTTGSLFANLANNYDKFNYTNPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGAGAEVLYRPLDSNWAFGLDANYVKQRDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVSKEEYGEGDFTKGVYVSVPLDLFSSGPTRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"EG11926-MONOMER" "putative lipoprotein YjbH" ["YjbH"] "MKKRHLLSLLALGISTACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDNDQYRYYSASVQLFPWLETTLRYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWLPQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGYLGTSGNVKNPLCSASDKYCYRDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSKFNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPSYNDNARPQYQPQPQDAILQHSVVANQLTLLKYNAGLADPQIQAKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPDGIKTIRITENRLNMPQVTTETDVASLKNHLAGEPLGHETTLAQKRVEPVVPQSTEQGWYIDKSRFDFHIDPVLNQSVGGPENFYMYQLGVMGTADLWLTDHLLTTGSLFANLANNYDKFNYTNPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGAGAEVLYRPLDSNWAFGLDANYVKQRDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVSKEEYGEGDFTKGVYVSVPLDLFSSGPTRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR" [] ["CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] 0 [] {} 0 "EG11927-MONOMER" "pentapeptide repeats-containing protein YjbI" ["YjbI"] "MISHILNSGGNNSLMKHDVVQGNNIVDLDLLRNLNGVPGLNRDNFIYISNIFSNIKQRNEKIMQ*ICFVKSQSVMIL*V*NSTEMKKIECACNFLMDKDAQGYIDLSDLDLTSCHFKGDVISKVSFLSSNLQHVTFECKEIGDCNFTTAIVDNVIFRCRRLHNVIFIKASGECVDFSKNILDTVDFSQSQLGHSNFRECQIRNSNFDNCYLYASHFTRAEFLSAKEISFIKSNLTAVMFDYVRMSTGNFKDCITEQLELTIDYSDIFWNEDLDGYINNIIKMIDTLPDNAMILKSVLAVKLVMQLKILNIVNKNFIENMKKIFSHCPYIKDPIIRSYIHSDEDNKFDDFMRQHRFSEVNFDTQQMIDFINRFNTNKWLIDKNNNFFIQLIDQALRSTDDMIKANVWHLYKEWIRSDDVSPIFIETEDNLRTFNTNELTRNDNIFILFSSVDDGPVMVVSSQRLHDMLNPTKDTNWNSTYIYKSRHEMLPVNLTQETLFSSKSHGKYALFPIFTASWRAHRIMNKGV" [] [] 0 [] {} 0 "EG11928-MONOMER" "putative stress response protein YjbJ" ["YjbJ"] "MNKDEAGGNWKQFKGKVKEQWGKLTDDDMTIIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNEYRW" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11929-MONOMER" "DNA-binding transcriptional repressor Zur" ["ZnuR", "YjbK", "Zur"] "MEKTTTQELLAQAEKICAQRNVRLTPQRLEVLRLMSLQDGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVESTNSYVLCHLFDQPTHTSAMFICDRCGAVKEECAEGVEDIMHTLAAKMGFALRHNVIEAHGLCAACVEVEACRHPEQCQHDHSVQVKKKPR" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG11930-MONOMER" "uncharacterized protein YjbL" ["YjbL"] "MLKIIPGATGYFNKTLNSNQFDNEDAIKDKLDNRGSIKGKLNNIYGKSIDYAALRHRDIIIAKIDLFIQRITHNLWHARKKMCF" [] [] 0 [] {} 0 "EG11931-MONOMER" "DUF2713 domain-containing protein YjbM" ["YjbM"] "MWVNKYIDDCTDEDLNDRDFIASVVDRAIFHFAINSICNPGDNKDAMPIEQCTFDVETKNDLPSTVQLFYEESKDNEPLANIHFQAIGSGFLTFVNACQEHDDNSLKLFASLLISLSYSSAYADLSETVYINENNESYLKAQFEKLSQRDMKKYLGEMKRLADGGEMNFDGYLDKMSHLVNEGTLDPDILSKMRDAAPQLISFAKSFDPTSKEEIKILTDTSKLIYDLFGVKSEK" [] [] 0 [] {} 0 "EG11932-MONOMER" "tRNA-dihydrouridine synthase A" ["DusA", "YjbN"] "MHGNSEMQKINQTSAMPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEHALKLVADKR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11933-MONOMER" "phage shock protein G" ["YjbO", "PspG"] "MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWVIKAIKAPKVPKYQRYDRWRY" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11933-MONOMER" "phage shock protein G" ["YjbO", "PspG"] "MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWVIKAIKAPKVPKYQRYDRWRY" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11935-MONOMER" "PF01894 family protein YjbQ" ["YjbQ", "UPF0047 protein YjbQ"] "MWYQKTLTLSAKSRGFHLVTDEILNQLADMPRVNIGLLHLLLQHTSASLTLNENCDPTVRHDMERFFLRTVPDNGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQGIWLGEHRIHGGSRRIIATLQGE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11936-MONOMER" "PF04237 family protein YjbR" ["YjbR"] "MTISELLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEVENRPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11937-MONOMER" "uncharacterized protein YjcB" ["YjcB"] "MATLTTGVVLLRWQLLSAVMMFLASTLNIRFRRSDYVGLAVISSGLGVVSACWFAMGLLGITMADITAIWHNIESVMIEEMNQTPPQWPMILT" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG11938-MONOMER" "cyclic di-GMP phosphodiesterase PdeC" ["PdeC", "YjcC"] "MSHRARHQLLALPGIIFLVLFPIILSLWIAFLWAKSEVNNQLRTFAQLALDKSELVIRQADLVSDAAERYQGQVCTPAHQKRMLNIIRGYLYINELIYARDNHFLCSSLIAPVNGYTIAPADYKREPNVSIYYYRDTPFFSGYKMTYMQRGNYVAVINPLFWSEVMSDDPTLQWGVYDTVTKTFFSLSKEASAATFSPLIHLKDLTVQRNGYLYATVYSTKRPIAAIVATSYQRLITHFYNHLIFALPAGILGSLVLLLLWLRIRQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQIMNPAEFIPLAEKEGMIEQITDYVIDNVFRDLGDYLATHADRYVSINLSASDFHTSRLIARINQKTEQYAVRPQQIKFEVTEHAFLDVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDILKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGWFFAKAMPPQVFMQWMEQLPARELTRGQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11938-MONOMER" "cyclic di-GMP phosphodiesterase PdeC" ["PdeC", "YjcC"] "MSHRARHQLLALPGIIFLVLFPIILSLWIAFLWAKSEVNNQLRTFAQLALDKSELVIRQADLVSDAAERYQGQVCTPAHQKRMLNIIRGYLYINELIYARDNHFLCSSLIAPVNGYTIAPADYKREPNVSIYYYRDTPFFSGYKMTYMQRGNYVAVINPLFWSEVMSDDPTLQWGVYDTVTKTFFSLSKEASAATFSPLIHLKDLTVQRNGYLYATVYSTKRPIAAIVATSYQRLITHFYNHLIFALPAGILGSLVLLLLWLRIRQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQIMNPAEFIPLAEKEGMIEQITDYVIDNVFRDLGDYLATHADRYVSINLSASDFHTSRLIARINQKTEQYAVRPQQIKFEVTEHAFLDVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDILKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGWFFAKAMPPQVFMQWMEQLPARELTRGQ" ["CCO-PM-BAC-NEG"] ["CCO-PERI-BAC", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11939-MONOMER" "guanine/hypoxanthine transporter GhxP" ["GhxP", "YjcD"] "MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGLGSIVMGLWANLPLAIGCAISLTAFTAFSLVLGQHISVPVALGAVFLMGVLFTVISATGIRSWILRNLPHGVAHGTGIGIGLFLLLIAANGVGLVIKNPLDGLPVALGDFATFPVIMSLVGLAVIIGLEKLKVPGGILLTIIGISIVGLIFDPNVHFSGVFAMPSLSDENGNSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIIDGGKALTTDSMSSVFSGLVGAAPAAVYIESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPGYATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVLTCNIVTGIMIGFATLVIGRLVSGEWRKLNIGTVVIAVALVTFYAGGWAI" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11941-MONOMER" "pentapeptide repeat-containing protein YjcF" ["YjcF"] "MRYNGLNNMFFPLCLINDNHSVTSPSHTKKTKSDNYSKHHKNTLIDNKALSLFKMDDHEKVIGLIQKMKRIYDSLPSGKITKETDRKIHKYFIDIASHANNKCDDRITRRVYLNKDKEVSIKVVYFINNVTVHNNTIEIPQTVNGGYDFSHLSLKGIVIKDEDLSNSNFAGCRLQNAIFQDCNMYKTNFNFAIMEKILFDNCILDDSNFAQIKMTDGTLNSCSAMHVQFYNATMNRANIKNTFLDYSNFYMAYMAEVNLYKVIAPYINLFRADLSFSKLDLINFEHADLSRVNLNKATLQNINLIDSKLFFTRLTNTFLEMVICTDSNMANVNFNNANLSNCHFNCSVLTKAWMFNIRLYRVNFDEASVQGMGITILRGEENISINSDILVTLQKFFEEDCATHTGMSQTEDNLHAVAMKITADIMQDAD" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11948-MONOMER" "putative cytochrome c-type biogenesis protein NrfE" ["YjcL", "NrfE", "formate-dependent nitrite reductase; possible assembly function"] "MLTPLTAFAGVRLRWPAMMRLTCIGILAQFALLLLAFGVLTYCFLISDFSVIYVAQHSYSLLSWELKLAAVWGGHEGSLLLWVLLLSAWSALFAWHYRQQTDPLFPLTLAVLSLMLAALLLFVVLWSDPFVRIFPPAIEGRDLNPMLQHPGLIFHPPLLYLGYGGLMVAASVALASLLRGEFDGACARICWRWALPGWSALTAGIILGSWWAYCELGWGGWWFWDPVENASLLPWLSATALLHSLSLTRQRGIFCHWSLLLAIVTLMLSLLGTLIVRSGILVSVHAFALDNVRAVPLFSLFALISLASLALYGWRARDGGPAVHFSGLSREMLILATLLLFCAVLLIVLVGTLYPMIYGLLGWGRLSVGAPYFNRATLPFGLLMLVVIVLATFVSGKRVQLPALVAHAGVLLFAAGVVVSSVSRQEISLNLQPGQQVTLAGYTFRFECLDLQAKGNYTSEKAIVALFDHQQRIGELTPERRFYEARRQQMMEPSIRWNGIHDWYAVMGEKTGPDRYAFRLYVQSGVRWIWGGGLLMIAGALLSGWRGKKRDE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -1322,7 +1322,7 @@ "EG11950-MONOMER" "putative formate-dependent nitrite reductase complex subunit NrfG" ["AidC", "YjcN", "NrfG"] "MKQPKIPVKMLTTLTILMVFLCVGSYLLSPKWQAVRAEYQRQRDPLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRVNRTQLVESINMAKLLQRRLD" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 "EG11951-MONOMER" "Sel1 repeat-containing protein YjcO" ["YjcO"] "MKKIIALMLFLTFFAHANDSEPGSQYLKAAEAGDRRAQYFLADSWFSSGDLSKAEYWAQKAADSGDADACALLAQIKITNPVSLDYPQAKVLAEKAAQAGSKEGEVTLAHILVNTQAGKPDYPKAISLLENASEDLENDSAVDAQMLLGLIYANGVGIKADDDKATWYFKRSSAISRTGYSEYWAGMMFLNGEEGFIEKNKQKALHWLNLSCMEGFDTGCEEFEKLTNG" [] [] 0 [] {} 0 "EG11952-MONOMER" "putative multidrug efflux pump outer membrane channel" ["MdtP", "YjcP", "SdsP"] "MINRQLSRLLLCSILGSTTLISGCALVRKDSAPHQQLKPEQIKLADDIHLASSGWPQAQWWKQLNDPQLDALIQRTLSGSHTLAEAKLREEKAQSQADLLDAGSQLQVAALGMLNRQRVSANGFLSPYSMDAPALGMDGPYYTEATVGLFAGLDLDLWGVHRSAVAAAIGAHNAALAETAAVELSLATGVAQLYYSMQASYQMLDLLEQTHDVIDYAVKAHQSKVAHGLEAQVPFHGARAQILAVDKQIVAVKGQITETRESLRALIGAGASDMPEIRPVALPQVQTGIPATLSYELLARRPDLQAMRWYVQASLDQVDSARALFYPSFDIKAFFGLDSIHLHTLFKKTSRQFNFIPGLKLPLFDGGRLNANLEGTRAASNMMIERYNQSVLNAVRDVAVNGTRLQTLNDEREMQAERVEATRFTQRAAEAAYQRGLTSRLQATEARLPVLAEEMSLLMLDSRRVIQSIQLMKSLGGGYQAGPVVEKK" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 -"EG11954-MONOMER" "putative multidrug efflux pump membrane fusion protein" ["MdtN", "YjcR", "SdsR"] "MESTPKKAPRSKFPALLVVALALVALVFVIWRVDSAPSTNDAYASADTIDVVPEVSGRIVELAVTDNQAVKQGDLLFRIDPRPYEANLAKAEASLAALDKQIMLTQRSVDAQQFGADSVNATVEKARAAAKQATDTLRRTEPLLKEGFVSAEDVDRARTAQRAAEADLNAVLLQAQSAASAVSGVDALVAQRAAVEADIALTKLHLEMATVRAPFDGRVISLKTSVGQFASAMRPIFTLIDTRHWYVIANFRETDLKNIRSGTPATIRLMSDSGKTFEGKVDSIGYGVLPDDGGLVLGGLPKVSRSINWVRVAQRFPVKIMVDKPDPEMFRIGASAVANLEPQ" [] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"EG11954-MONOMER" "putative multidrug efflux pump membrane fusion protein" ["MdtN", "YjcR", "SdsR"] "MESTPKKAPRSKFPALLVVALALVALVFVIWRVDSAPSTNDAYASADTIDVVPEVSGRIVELAVTDNQAVKQGDLLFRIDPRPYEANLAKAEASLAALDKQIMLTQRSVDAQQFGADSVNATVEKARAAAKQATDTLRRTEPLLKEGFVSAEDVDRARTAQRAAEADLNAVLLQAQSAASAVSGVDALVAQRAAVEADIALTKLHLEMATVRAPFDGRVISLKTSVGQFASAMRPIFTLIDTRHWYVIANFRETDLKNIRSGTPATIRLMSDSGKTFEGKVDSIGYGVLPDDGGLVLGGLPKVSRSINWVRVAQRFPVKIMVDKPDPEMFRIGASAVANLEPQ" [] ["CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG11955-MONOMER" "linear primary-alkylsulfatase" ["YjcS"] "MNNSRLFRLSRIVIALTAASGMMVNTANAKEEAKAATQYTQQVNQNYAKSLPFSDRQDFDDAQRGFIAPLLDEGILRDANGKVYYRADDYKFDINAAAPETVNPSLWRQSQINGISGLFKVTDKMYQVRGQDISNITFVEGEKGIIVIDPLVTPPAAKAALDLYFQHRPQKPIVAVIYTHSHTDHYGGVKGIISEADVKSGKVQVIAPAGFMDEAISENVLAGNIMSRRALYSYGLLLPHNAQGNVGNGLGVTLATGDPSIIAPTKTIVRTGEKMIIDGLEFDFLMTPGSEAPAEMHFYIPALKALCTAENATHTLHNFYTLRGAKTRDTSKWTEYLNETLDMWGNDAEVLFMPHTWPVWGNKHINDYIGKYRDTIKYIHDQTLHLANQGYTMNEIGDMIKLPPALANNWASRGYYGSVSHNARAVYNFYLGYYDGNPANLHPYGQVEMGKRYVQALGGSARVINLAQEANKQGDYRWSAELLKQVIAANPGDQVAKNLQANNFEQLGYQAESATWRGFYLTGAKELREGVHKFSHGTTGSPDTIRGMSVEMLFDFMAVRLDSAKAAGKNISLNFNMSNGDNLNLTLNDSVLNYRKTLQPQADASFYISREDLHAVLTGQAKMADLVKAKKAKIIGNGAKLEEIIACLDNFDLWVNIVTPN" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {"ZN+2": 2} 0 "EG11956-MONOMER" null ["YjcT", "AlsK"] "MQKQHNVVAGVDMGATHIRFCLRTAEGETLHCEKKRTAEVIAPGLVSGIGEMIDEQLRRFNARCHGLVMGFPALVSKDKRTIISTPNLPLTAADLYDLADKLENTLNCPVEFSRDVNLQLSWDVVENRLTQQLVLAAYLGTGMGFAVWMNGAPWTGAHGVAGELGHIPLGDMTQHCACGNPGCLETNCSGMALRRWYEQQPRNYPLRDLFVHAENAPFVQSLLENAARAIATSINLFDPDAVILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASSSDFNGAQGAAILAHQRFLPQFCAKAP" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11957-MONOMER" "D-allulose-6-phosphate 3-epimerase" ["YjcU", "AlsE"] "MKISPSLMCMDLLKFKEQIEFIDSHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTSGLFNHAENIDEAWRIMTAQILAAKSEVQPHAKTA" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 @@ -1338,10 +1338,10 @@ "EG11975-MONOMER" "flagellar biosynthesis protein FliP" ["FlaR", "FliP"] "MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSFYS" ["CCO-PM-BAC-NEG"] ["CCO-CELL-PROJECTION", "CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG11976-MONOMER" "flagellar biosynthesis protein FliQ" ["FlaQ", "FliQ", "flagellar biosynthetic protein FliQ"] "MTPESVMMMGTEAMKVALALAAPLLLVALVTGLIISILQAATQINEMTLSFIPKIIAVFIAIIIAGPWMLNLLLDYVRTLFTNLPYIIG" [] ["CCO-CELL-PROJECTION", "CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG11977-MONOMER" "flagellar biosynthesis protein FliR" ["FlaP", "FliR"] "MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISELPLI" ["CCO-PM-BAC-NEG"] ["CCO-CELL-PROJECTION", "CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"EG11982-MONOMER" "putative O-antigen polymerase" ["YefF", "WbbH", "Rfc"] "MIYLVISVFLITAFICLYLKKDIFYPAVCVNIIFALVLLGYEITSDIYAFQLNDATLIFLLCNVLTFTLSCLLTESVLDLNIRKVNNAIYSIPSKKVHNVGLLVISFSMIYICMRLSNYQFGTSLLSYMNLIRDADVEDTSRNFSAYMQPIILTTFALFIWSKKFTNTKVSKTFTLLVFIVFIFAIILNTGKQIVFMVIISYAFIVGVNRVKHYVYLITAVGVLFSLYMLFLRGLPGGMAYYLSMYLVSPIIAFQEFYFQQVSNSASSHVFWFFERLMGLLTGGVSMSLHKEFVWVGLPTNVYTAFSDYVYISAELSYLMMVIHGCISGVLWRLSRNYISVKIFYSYFIYTFSFIFYHESFMTNISSWIQITLCIIVFSQFLKAQKIK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG11982-MONOMER" "putative O-antigen polymerase" ["YefF", "WbbH", "Rfc"] "MIYLVISVFLITAFICLYLKKDIFYPAVCVNIIFALVLLGYEITSDIYAFQLNDATLIFLLCNVLTFTLSCLLTESVLDLNIRKVNNAIYSIPSKKVHNVGLLVISFSMIYICMRLSNYQFGTSLLSYMNLIRDADVEDTSRNFSAYMQPIILTTFALFIWSKKFTNTKVSKTFTLLVFIVFIFAIILNTGKQIVFMVIISYAFIVGVNRVKHYVYLITAVGVLFSLYMLFLRGLPGGMAYYLSMYLVSPIIAFQEFYFQQVSNSASSHVFWFFERLMGLLTGGVSMSLHKEFVWVGLPTNVYTAFSDYVYISAELSYLMMVIHGCISGVLWRLSRNYISVKIFYSYFIYTFSFIFYHESFMTNISSWIQITLCIIVFSQFLKAQKIK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11983-MONOMER" "β-1,6-galactofuranosyltransferase WbbI" ["WbbI", "YefG"] "MYFLNDLNFSRRDAGFKARKDALDIASDYENISVVNIPLWGGVVQRIISSVKLSTFLCGLENKDVLIFNFPMAKPFWHILSFFHRLLKFRIVPLIHDIDELRGGGGSDSVRLATCDMVISHNPQMTKYLSKYMSQDKIKDIKIFDYLVSSDVEHRDVTDKQRGVIYAGNLSRHKCSFIYTEGCDFTLFGVNYENKDNPKYLGSFDAQSPEKINLPGMQFGLIWDGDSVETCSGAFGDYLKFNNPHKTSLYLSMELPVFIWDKAALADFIVDNRIGYAVGSIKEMQEIVDSMTIETYKQISENTKIISQKIRTGSYFRDVLEEVIDDLKTR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG11984-MONOMER" "putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ" ["WbbJ", "YefH"] "MILKLAKRYGLCGFIRLVRDVLLTRVFYRNCRIIRFPCYIRNDGSINFGENFTSGVGLRLDAFGRGVIFFSDNVQVNDYVHIASIESVTIGRDTLIASKVFITDHNHGSFKHSDPMSSPNIPPDMRTLESSAVVIGQRVWLGENVTVLPGTIIGNGVVVGANSVVRGSIPENTVIAGVPAKIIKKYNHETKLWEKA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG11985-MONOMER" "putative glycosyltransferase WbbK" ["WbbK", "YefI"] "MGKSIVVVSAVNFTTGGPFTILKKFLAATNNKENVSFIALVHSAKELKESYPWVKFIEFPEVKGSWLKRLHFEYVVCKKLSKELNATHWICLHDITANVVTKKRYVYCHNPAPFYKGILFREILMEPSFFLFKMLYGLIYKINIKKNTAVFVQQFWMKEKFIKKYSINNIIVSRPEIKLSDKSQLTDDDSQFKNNPSELTIFYPAVPRVFKNYELIISAARKLKEQSNIKFLLTISGTENAYAKYIISLAEGLDNVHFLGYLDKEKIDHCYNISDIVCFPSRLETWGLPLSEAKERGKWVLASDFPFTRETLGSYEKKAFFDSNNDDMLVKLIIDFKKGNLKKDISDANFIYRNENVLVGFDELVNFITEEH" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"EG11985-MONOMER" "putative glycosyltransferase WbbK" ["WbbK", "YefI"] "MGKSIVVVSAVNFTTGGPFTILKKFLAATNNKENVSFIALVHSAKELKESYPWVKFIEFPEVKGSWLKRLHFEYVVCKKLSKELNATHWICLHDITANVVTKKRYVYCHNPAPFYKGILFREILMEPSFFLFKMLYGLIYKINIKKNTAVFVQQFWMKEKFIKKYSINNIIVSRPEIKLSDKSQLTDDDSQFKNNPSELTIFYPAVPRVFKNYELIISAARKLKEQSNIKFLLTISGTENAYAKYIISLAEGLDNVHFLGYLDKEKIDHCYNISDIVCFPSRLETWGLPLSEAKERGKWVLASDFPFTRETLGSYEKKAFFDSNNDDMLVKLIIDFKKGNLKKDISDANFIYRNENVLVGFDELVNFITEEH" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG11986-MONOMER" "interrupted rhamnosyltransferase WbbL" ["WbbL", "YefJ", "lipopolysaccharide biosynthesis protein, N-terminal fragment"] "MVYIIIVSHGHEDYIKKLLENLNADDEHYKIIVRDNKDSLLLKQICQHYAGLDYISGGVYGFGHNNNIAVAYVKEKYRPADDDYILFLNPDIIMKHDDLLTYIKYVESKRYAFSTLCLFRDEAKSLHDYSVRKFPVLSDFIVSFMLGINKTKIPKESIYSDTVVDWCAGSFMLVRFSDFVRVNGFDQGYFMYCEDIDLCLRLSLAGVRLHYVPAFHAIHYAHHDNRSFFSKAFRWHLKSTFRYLARKRILSNRNFDRISSVFHP" [] ["CCO-MEMBRANE"] 0 [] {} 0 "EG11987-MONOMER" "putative fimbrial adhesin YehA" ["YehA"] "MEIRIMLFILMMMVMPVSYAACYSELSVQHNLVVQGDFALTQTQMATYEHNFNDSSCVSTNTITPMSPSDIIVGLYNDTIKLNLHFEWTNKNNITLSNNQTSFTSGYSVTVTPAASNAKVNVSAGGGGSVMINGVATLSSASSSTRGSAAVQFLLCLLGGKSWDACVNSYRNALAQNAGVYSFNLTLSYNPITTTCKPDDLLITLDSIPVSQLPATGNKATINSKQGDIILRCKNLLGQQNQTSRKMQVYLSSSDLLTNSNTILKGAEDNGVGFILESNGSPVTLLNITNSSKGYTNLKEVAAKSKLTDTTVSIPITASYYVYDTNKVKSGALEATALINVKYD" [] ["CCO-PILUS"] 0 [] {} 0 "EG11988-MONOMER" "putative fimbrial usher protein YehB" ["YehB"] "MLRMTPLASAIVALLLGIEAYAAEETFDTHFMIGGMKDQQVANIRLDDNQPLPGQYDIDIYVNKQWRGKYEIIVKDNPQETCLSREVIKRLGINSDNFASGKQCLTFEQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPENWERGINAFYTSYYLSQYYSDYKASGNNKSTYVRFNSGLNLLGWQLHSDASFSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVTIEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDLAAGRSHIEGASKQSDFVQAGYQYGFNNLLTLYGGSMVANNYYAFTLGAGWNTRIGAISVDATKSHSKQDNGDVFDGQSYQIAYNKFVSQTSTRFGLAAWRYSSRDYRTFNDHVWANNKDNYRRDENDVYDIADYYQNDFGRKNSFSANMSQSLPEGWGSVSLSTLWRDYWGRSGSSKDYQLSYSNNLRRISYTLAASQAYDENHHEEKRFNIFISIPFDWGDDVSTPRRQIYMSNSTTFDDQGFASNNTGLSGTVGSRDQFNYGVNLSHQHQGNETTAGANLTWNAPVATVNGSYSQSSTYRQAGASVSGGIVAWSGGVNLANRLSETFAVMNAPGIKDAYVNGQKYRTTNRNGVVIYDGMTPYRENHLMLDVSQSDSEAELRGNRKIAAPYRGAVVLVNFDTDQRKPWFIKALRADGQSLTFGYEVNDIHGHNIGVVGQGSQLFIRTNEVPPSVNVAIDKQQGLSCTITFGKEIDESRNYICQ" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 @@ -1354,21 +1354,21 @@ "EG11999-MONOMER" "uncharacterized protein YehM" ["YehN", "YehO", "YehM"] "MSEPLIVGIRHHSPACARLVKSLIESQRPRYVLIEGPADFNDRVDELFLAHQLPVAIYSYCQYQDGAAPGRGAWTPFAEFSPEWQALQAARRIQAQTYFIDLPCWAQSEEEDDSPDTQDESQALLLRATRMDNSDTLWDHLFEDESQQTALPSALAHYFAQLRGDASGDALNRQREAFMARWIGWAMQQNNGDVLVVCGGWHAPALAKMWRECPQKINKPELPSLADAVTGCYLTPYSEKRLDVLAGYLSGMPAPVWQNWCWQWGLQKAGEQLLKTILTRLRQHKLPASTADMAAAHLHAMALAQLRGHTLPLRTDWLDAIAGSLIKEALNAPLPWSYRGVIHPDTDPILLTLIDTLAGDGFGKLAPSTPQPPLPKDVTCELERTAISLPAELTLNRFTPDGLAQSQVLHRLAILEIPGIVRQQGSTLTLAGNGEERWKLTRPLSQHAALIEAACFGATLQEAARNKLEADMLDAGGIGSITTCLSQAALAGLASFSQQLLEQLTLLIAQENQFAEMGQALEVLYALWRLDEISGMQGAQILQTTLCATIDRTLWLCESNGRPDEKEFHAHLHSWQALCHILRDLHSGVNLPGVSLSAAVALLERRSQAIHAPALDRGAALGALMRLEHPNASAEAALTMLAQLSPAQSGEALHGLLALARHQLACQPAFIAGFSSHLNQLSEADFINALPDLRAAMAWLPPRERGTLAHQVLEHYQLAQLPVSALQMPLHCPPQAIAHHQQLEQQALASLQNWGVFHV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12002-MONOMER" "VWA domain-containing protein YehP" ["YehP"] "MSELNDLLTTRELQRWRLILGEAAETTLCGLDDNARQIDHALEWLYGRDPERLQRGERSGGLGGSNLTTPEWINSIHTLFPQQVIERLESDAVLRYGIEDVVTNLDVLERMQPSESLLRAVLHTKHLMNPEVLAAARRIVCQVVEEIMARLAKEVRQAFSGVRDRRRRSFIPLARNFDFKSTLRANLQHWHPQHGKLYIESPRFNSRIKRQSEQWQLVLLVDQSGSMVDSVIHSAVMAACLWQLPGIRTHLVAFDTSVVDLTADVADPVELLMKVQLGGGTNIASAVEYGRQLIEQPAKSVIILVSDFYEGGSSSLLTHQVKKCVQSGIKVLGLAALDSTATPCYDRDTAQALVNVGAQIAAMTPGELASWLAENLQS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12003-MONOMER" "SWIM zinc finger domains-containing protein YehQ" ["YehQ"] "MNSLRPELLELTPQALTALSNAGFVKRSLKELENGNVPEISHENDALIATFSDGVRTQLANGQALKEAQCSCGANGMCRHRVMLVLSYQRLCATTQSTEKEEEWDPAIWLEELATLPDATRKRAQALVAKGITIELFCAPGEIPSARLPMSDVRFYSRSSIRFARCDCIEGTLCEHVVLAVQAFVEAKAQQAEFNHLIWQMRSEHVTSSDDPFASEEGNACRQYVQQLSQTLWLGGISQPLIHYEAAFNRALQAAETCNWRWVSESLRQLRASVDAFHARASHYNAGECLHQLAALNSRLNCAQEMARRDSIGEVPPVPWRTVVGSGIAGEAKLDHLRLVSLGMRCWQDIEHYGLRIWFTDPDTGSILHLSRSWPRSEQENSPAATRRLFSFQAGALAGGQIVSQAAKRSADGELLLATRNRLSSVVPLSPDAWQMLSAPLRQPGIVALREYLRQRPPACIRPLNQVDNLFILPVAECISLGWDSSRQTLDAQVISGEGEDNVLTLSLPASASAPYAVERMAALLQQTDDPVCLVSGFVSFVEGQLTLEPRVMMTKTRAWALDAETTPVAPLPSASVLPVPSTAHQLLIRCQALLIQLLHNGWRYQEQSAIGQA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12004-MONOMER" "DUF1307 domain-containing lipoprotein YehR" ["YehR"] "MKAFNKLFSLVVASVLVFSLAGCGDKEESKKFSANLNGTEIAITYVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEKLTYTDTYAQENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEVK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 0 +"EG12004-MONOMER" "DUF1307 domain-containing lipoprotein YehR" ["YehR"] "MKAFNKLFSLVVASVLVFSLAGCGDKEESKKFSANLNGTEIAITYVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEKLTYTDTYAQENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEVK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 "EG12005-MONOMER" "DUF1456 domain-containing protein YehS" ["YehS"] "MLSNDILRSVRYILKANNNDLVRILALGNVEATAEQIAVWLRKEDEEGFQRCPDIVLSSFLNGLIYEKRGKDESAPALEPERRINNNIVLKKLRIAFSLKTDDILAILTEQQFRVSMPEITAMMRAPDHKNFRECGDQFLRYFLRGLAARQHVKKG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12006-MONOMER" "DNA-binding transcriptional dual regulator BtsR" ["BtsR", "YehT"] "MIKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVHKLRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLLKPIDEARLEKTLARLRQERSKQDVSLLPENQQALKFIPCTGHSRIYLLQMKDVAFVSSRMSGVYVTSHEGKEGFTELTLRTLESRTPLLRCHRQYLVNLAHLQEIRLEDNGQAELILRNGLTVPVSRRYLKSLKEAIGL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12007-MONOMER" "high-affinity pyruvate receptor" ["YehU"] "MYDFNLVLLLLQQMCVFLVIAWLMSKTPLFIPLMQVTVRLPHKFLCYIVFSIFCIMGTWFGLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSMGGMTALSCMISTIVEGLLGGLVHSILIRRGRTDKVFNPITAGAVTFVAEMVQMLIILAIARPYEDAVRLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAASTEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHLPGKPISSTYTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNRLFSSINRTLGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIKAVIRRDSEQASQLVQYLSTFFRKNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQVNIAIPQELSQQQLPAFTLQPIVENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNAGLYQPVTNASGLGMNLVDKRLRERFGDDYGISVACEPDSYTRITLRLPWRDEA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG12008-MONOMER" "DNA-binding transcriptional activator MlrA" ["MlrA", "YehV"] "MALYTIGEVALLCDINPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIKRWIDNGVQVSKVKMLLSNENVDVQNGWRDQQETLLTYLQSGNLHSLRTWIKERGQDYPAQTLTTHLFIPLRRRLQCQQPTLQALLAILDGVLINYIAICLASARKKQGKDALVVGWNIQDTTRLWLEGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQLTSWQEQGHDIFPLGI" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12013-MONOMER" "putative periplasmic glycoside hydrolase" ["YohA", "Glh", "BglX"] "MKWLCSVGIAVSLALQPALADDLFGNHPLTPEARDAFVTELLKKMTVDEKIGQLRLISVGPDNPKEAIREMIKDGQVGAIFNTVTRQDIRAMQDQVMELSRLKIPLFFAYDVLHGQRTVFPISLGLASSFNLDAVKTVGRVSAYEAADDGLNMTWAPMVDVSRDPRWGRASEGFGEDTYLTSTMGKTMVEAMQGKSPADRYSVMTSVKHFAAYGAVEGGKEYNTVDMSPQRLFNDYMPPYKAGLDAGSGAVMVALNSLNGTPATSDSWLLKDVLRDQWGFKGITVSDHGAIKELIKHGTAADPEDAVRVALKSGINMSMSDEYYSKYLPGLIKSGKVTMAELDDAARHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVARESLVLLKNRLETLPLKKSATIAVVGPLADSKRDVMGSWSAAGVADQSVTVLTGIKNAVGENGKVLYAKGANVTSDKGIIDFLNQYEEAVKVDPRSPQEMIDEAVQTAKQSDVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKATGKPLVLVLMNGRPLALVKEDQQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQIPVYYSHLNTGRPYNADKPNKYTSRYFDEANGALYPFGYGLSYTTFTVSDVKLSAPTMKRDGKVTASVQVTNTGKREGATVVQMYLQDVTASMSRPVKQLKGFEKITLKPGETQTVSFPIDIEALKFWNQQMKYDAEPGKFNVFIGTDSARVKKGEFELL" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 +"EG12013-MONOMER" "putative periplasmic glycoside hydrolase" ["YohA", "Glh", "BglX", "beta-D-glucoside glucohydrolase, periplasmic"] "MKWLCSVGIAVSLALQPALADDLFGNHPLTPEARDAFVTELLKKMTVDEKIGQLRLISVGPDNPKEAIREMIKDGQVGAIFNTVTRQDIRAMQDQVMELSRLKIPLFFAYDVLHGQRTVFPISLGLASSFNLDAVKTVGRVSAYEAADDGLNMTWAPMVDVSRDPRWGRASEGFGEDTYLTSTMGKTMVEAMQGKSPADRYSVMTSVKHFAAYGAVEGGKEYNTVDMSPQRLFNDYMPPYKAGLDAGSGAVMVALNSLNGTPATSDSWLLKDVLRDQWGFKGITVSDHGAIKELIKHGTAADPEDAVRVALKSGINMSMSDEYYSKYLPGLIKSGKVTMAELDDAARHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVARESLVLLKNRLETLPLKKSATIAVVGPLADSKRDVMGSWSAAGVADQSVTVLTGIKNAVGENGKVLYAKGANVTSDKGIIDFLNQYEEAVKVDPRSPQEMIDEAVQTAKQSDVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKATGKPLVLVLMNGRPLALVKEDQQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQIPVYYSHLNTGRPYNADKPNKYTSRYFDEANGALYPFGYGLSYTTFTVSDVKLSAPTMKRDGKVTASVQVTNTGKREGATVVQMYLQDVTASMSRPVKQLKGFEKITLKPGETQTVSFPIDIEALKFWNQQMKYDAEPGKFNVFIGTDSARVKKGEFELL" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 "EG12015-MONOMER" "peptidoglycan DD-endopeptidase PbpG" ["YohB", "PbpG", "PBP7", "PBP8", "penicillin-binding protein 7"] "MPKFRVSLFSLALMLAVPFAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPEMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHNVSTARDLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTWIETGKVMPVPAAALSYKKQKAAQMAAAGQTAQND" [] ["CCO-PERI-BAC"] 0 [] {} 0 "EG12016-MONOMER" "putative inner membrane protein" ["YohC"] "MSHVWGLFSHPDREMQVINRENETISHHYTHHVLLMAAIPVICAFIGTTQIGWNFGDGTILKLSWFTGLALAVLFYGVMLAGVAVMGRVIWWMARNYPQRPSLAHCMVFAGYVATPLFLSGLVALYPLVWLCALVGTVALFYTGYLLYLGIPSFLNINKEEGLSFSSSTLAIGVLVLEVLLALTVILWGYGYRLF" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG12017-MONOMER" "DedA family protein YohD" ["YohD"] "MDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLYLCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHLKHWVWLILVVVLVVGVRWWLKRRGKKKPDHQA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12017-MONOMER" "DedA family protein YohD" ["YohD"] "MDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLYLCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHLKHWVWLILVVVLVVGVRWWLKRRGKKKPDHQA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12019-MONOMER" "putative oxidoreductase YohF" ["YohE", "YohF", "putative oxidoreductase with NAD(P)-binding Rossmann-fold domain"] "MAQVAIITASDSGIGKECALLLAQQGFDIGITWHSDEEGAKDTAREVVSHGVRAEIVQLDLGNLPEGALALEKLIQRLGRIDVLVNNAGAMTKAPFLDMAFDEWRKIFTVDVDGAFLCSQIAARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHALGGLTKAMALELVRHKILVNAVAPGAIATPMNGMDDSDVKPDAEPSIPLRRFGATHEIASLVVWLCSEGANYTTGQSLIVDGGFMLANPQFNPE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12020-MONOMER" "putative multidrug resistance outer membrane protein MdtQ" ["YohH", "MdtQ", "YohG"] "MNRDSFYPAIACFPLLLMLAGCAPMHETRQALSQQTPAAQVDTALPTALKMVGQTANGGWSITIINSLP*LTMHYRTHRICRWLNSAFS*LKPRRRQLPLRMVRRSTFRRIWSGKKCRQKA*WGRLL*TIRPQVRPARGTPTVLLA*RRAGISISGERIGRRLLPAWVRLKHGRRNASKPANCWLAA*PACTGSGKPRRR*TRSCSK*KKSRTPLSRPIASYIRTGLLLQLKVWKPILMPAKPGSSSTMSRGK*KLLRHG*AHLQITRQSH*SLNRSRCRKWQASFLMNWGTPYWPGGQICRRRTGTLSHR*APLMRQKRHFILTST*WPSCNRMRCT*AICSVIPRSKWALRQA*RYPFSIVVVLTPISISQKPKATCLSPATTKRWLKR*MTWRGQPVRFRHWRRKTSIRRKLSAMPCVW*VLRRRALTRASLLVPASAKPESPRCVSGPMACYCKGSGWMPPFNSLVRWAGGTN" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 "EG12022-MONOMER" "tRNA-dihydrouridine16 synthase" ["DusC", "YohI"] "MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLSYLRKEYDEATELFQHVRVLNNSPDIARAIQAIDIEKL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12023-MONOMER" "putative 3-hydroxypropanoate export protein YohJ" ["YohJ"] "MSKTLNIIWQYLRAFVLIYACLYAGIFIASLLPVTIPGSIIGMLILFVLLALQILPAKWVNPGCYVLIRYMALLFVPIGVGVMQYFDLLRAQFGPVVVSCAVSTLVVFLVVSWSSQLVHGERKVVGQKGSEE" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG12024-MONOMER" "putative 3-hydroxypropanoate export protein YohK" ["YohK"] "MMANIWWSLPLTLIVFFAARKLAARYKFPLLNPLLVAMVVIIPFLMLTGISYDSYFKGSEVLNDLLQPAVVALAYPLYEQLHQIRARWKSIITICFIGSVVAMVTGTSVALLMGASPEIAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAMRIRTKAARGLAMGTASHALGTARCAELDYQEGAFSSLALVLCGIITSLIAPFLFPIILAVMG" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG12025-MONOMER" "DUF218 domain-containing protein SanA" ["YeiF", "SanA"] "MLKRVFLSLLVLIGLLLLTVLGLDRWMSWKTAPYIYDELQDLPYRQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHMGIQAQCYAVPSPKDMLSVRIREFAARFGALADLYIFKREPRFLGPLVPIPAMHQVPEDAQGYPAVTPEQLLELQKKQGK" [] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12024-MONOMER" "putative 3-hydroxypropanoate export protein YohK" ["YohK"] "MMANIWWSLPLTLIVFFAARKLAARYKFPLLNPLLVAMVVIIPFLMLTGISYDSYFKGSEVLNDLLQPAVVALAYPLYEQLHQIRARWKSIITICFIGSVVAMVTGTSVALLMGASPEIAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAMRIRTKAARGLAMGTASHALGTARCAELDYQEGAFSSLALVLCGIITSLIAPFLFPIILAVMG" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12025-MONOMER" "DUF218 domain-containing protein SanA" ["YeiF", "SanA"] "MLKRVFLSLLVLIGLLLLTVLGLDRWMSWKTAPYIYDELQDLPYRQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHMGIQAQCYAVPSPKDMLSVRIREFAARFGALADLYIFKREPRFLGPLVPIPAMHQVPEDAQGYPAVTPEQLLELQKKQGK" [] ["CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12026-MONOMER" "S-formylglutathione hydrolase / S-lactoylglutathione hydrolase" ["YeiG"] "MEMLEEHRCFEGWQQRWRHDSSTLNCPMTFSIFLPPPRDHTPPPVLYWLSGLTCNDENFTTKAGAQRVAAELGIVLVMPDTSPRGEKVANDDGYDLGQGAGFYLNATQPPWATHYRMYDYLRDELPALVQSQFNVSDRCAISGHSMGGHGALIMALKNPGKYTSVSAFAPIVNPCSVPWGIKAFSSYLGEDKNAWLEWDSCALMYASNAQDAIPTLIDQGDNDQFLADQLQPAVLAEAARQKAWPMTLRIQPGYDHSYYFIASFIEDHLRFHAQYLLK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG12027-MONOMER" "PF03601 family inner membrane protein YeiH" ["YeiH"] "MTNITLQKQHRTLWHFIPGLALSAVITGVALWGGSIPAVAGAGFSALTLAILLGMVLGNTIYPHIWKSCDGGVLFAKQYLLRLGIILYGFRLTFSQIADVGISGIIIDVLTLSSTFLLACFLGQKVFGLDKHTSWLIGAGSSICGAAAVLATEPVVKAEASKVTVAVATVVIFGTVAIFLYPAIYPLMSQWFSPETFGIYIGSTVHEVAQVVAAGHAISPDAENAAVISKMLRVMMLAPFLILLAARVKQLSGANSGEKSKITIPWFAILFIVVAIFNSFHLLPQSVVNMLVTLDTFLLAMAMAALGLTTHVSALKKAGAKPLLMALVLFAWLIVGGGAINYVIQSVIA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12028-MONOMER" "putative sugar kinase YeiI" ["YeiI"] "MNNREKEILAILRRNPLIQQNEIADMLQISRSRVAAHIMDLMRKGRIKGKGYILTEQEYCVVVGTINMDIRGMADIRYPQSASHPGTIHCSAGGVGRNIAHNLALLGRDVHLLSVIGDDFYGEMLLEETRRAGVNVSGCVRLHGQSTSTYLAIANRDDQTVLAINDTHLLEQLTPQLLNGSRDLLRHAGVVLADCNLTAEALEWVFTLADEIPVFVDTVSEFKAGKIKHWLAHIHTLKPTLPELEILWGQAITSDADRNTAVNALHQQGVQQLFVYLPDESVYCSEKDGEQFLLTAPAHTTVDSFGADDGFMAGLVYSFLEGYSFRDSARFAVACAAISRASGSLNNPTLSADNALSLVPMV" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -1380,15 +1380,15 @@ "EG12042-MONOMER" "protein YejG" ["YejG"] "MTSLQLSIVHRLPQNYRWSAGFAGSKVEPIPQNGPCGDNSLVALKLLSPDGDNAWSVMYKLSQALSDIEVPCSVLECEGEPCLFVNRQDEFAATCRLKNFGVAIAEPFSNYNPF" [] [] 0 [] {} 0 "EG12043-MONOMER" "DUF1414 domain-containing protein YejL" ["YejL"] "MPQISRYSDEQVEQLLAELLNVLEKHKAPTDLSLMVLGNMVTNLINTSIAPAQRQAIANSFARALQSSINEDKAH" ["CCO-CYTOSOL"] [] 0 [] {} 0 "EG12044-MONOMER" "16S rRNA pseudouridine516 synthase" ["YejD", "RsuA"] "MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12045-MONOMER" "putative DNA repair helicase RadD" ["YejI", "YejJ", "YejH", "RadD"] "MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITAADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAHELRG" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 +"EG12045-MONOMER" "DNA repair helicase RadD" ["YejI", "YejJ", "YejH", "RadD"] "MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITAADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAHELRG" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 "EG12048-MONOMER" "nucleoid-associated protein YejK" ["NdpA", "YejK"] "MSLDINQIALHQLIKRDEQNLELVLRDSLLEPTETVVEMVAELHRVYSAKNKAYGLFSEESELAQTLRLQRQGEEDFLAFSRAATGRLRDELAKYPFADGGFVLFCHYRYLAVEYLLVAVLSNLSSMRVNENLDINPTHYLDINHADIVARIDLTEWETNPESTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLLQAVDDFTAEAQLDKAERQNVRQQVYSYCNEQLQAGEEIELKSLSKELAGVSEVSFTEFAAEKGYELEESFPADRSTLRQLTKFAGSGGGLTINFDAMLLGERIFWDPATDTLTIKGTPPNLRDQLQRRTSGGN" ["CCO-BAC-NUCLEOID"] ["CCO-CYTOSOL", "CCO-BAC-NUCLEOID"] 1 [] {} 0 -"EG12049-MONOMER" "lipopolysaccharide signal transducer LapC" ["LapC", "PbgA", "YejN", "YejM", "lipopolysaccharide assembly protein C"] "MVTHRQRYREKVSQMVSWGHWFALFNILLSLVIGSRYLFIADWPTTLAGRIYSYVSIIGHFSFLVFATYLLILFPLTFIVGSQRLMRFLSVILATAGMTLLLIDSEVFTRFHLHLNPIVWQLVINPDENEMARDWQLMFISVPVILLLELVFATWSWQKLRSLTRRRRFARPLAAFLFIAFIASHVVYIWADANFYRPITMQRANLPLSYPMTARRFLEKHGLLDAQEYQRRLIEQGNPDAVSVQYPLSELRYRDMGTGQNVLLITVDGLNYSRFEKQMPALAGFAEQNISFTRHMSSGNTTDNGIFGLFYGISPSYMDGILSTRTPAALITALNQQGYQLGLFSSDGFTSPLYRQALLSDFSMPSVRTQSDEQTATQWINWLGRYAQEDNRWFSWVSFNGTNIDDSNQQAFARKYSRAAGNVDDQINRVLNALRDSGKLDNTVVIITAGRGIPLSEEEETFDWSHGHLQVPLVIHWPGTPAQRINALTDHTDLMTTLMQRLLHVSTPASEYSQGQDLFNPQRRHYWVTAADNDTLAITTPKKTLVLNNNGKYRTYNLRGERVKDEKPQLSLLLQVLTDEKRFIAN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG12051-MONOMER" "adhesin-like autotransporter YejO" ["YejO"] "MHQSGSVSLCRSAISVLVATALYSPIALASTVEYGETVDGVVLEKDIQLVYGTANNTKINPGGEQHIKEFGVSNNTEINGGYQYIEMNGAAEYSVLNDGYQIVQMGGAANQTTLNNGVLQVYGAANDTTIKGGRLIVEKDGGAVFVAIEKGGLLEVKEGGFAFAVDQKAGGAIKTTTRAMEVFGTNRLGQFDIKNGIANNMLLENGGSLRVEENDFAYNTTVDSGGLLEVMDGGTVTGVDKKAGGKLIVSTNALEVSGPNSKGQFSIKDGVSKNYELDDGSGLIVMEDTQAIDTILDKHATMQSLGKDTGTKVQANAVYDLGRSYQNGSITYSSKAISENMVINNGRANVWAGTMVNVSVRGNDGILEVMKPQINYAPAMLVGKVVVSEGASFRTHGAVDTSKADVSLENSVWTIIADITTTNQNTLLNLANLAMSDANVIMMDEPVTRSSVTASAENFITLTTNTLSGNGNFYMRTDMANHQSDQLNVTGQATGDFKIFVTDTGASPAAGDSLTLVTTGGGDAAFTLGNAGGVVDIGTYEYTLLDNGNHSWSLAENRAQITPSTTDVLNMAAAQPLVFDAELDTVRERLGSVKGVSYDTAMWSSAINTRNNVTTDAGAGFEQTLTGLTLGIDSRFSREESSTIRGLIFGYSHSDIGFDRGGKGNIDSYTLGAYAGWEHQNGAYVDGVVKVDRFANTIHGKMSNGATAFGDYNSNGAGAHVESGFRWVDGLWSVRPYLAFTGFTTDGQDYTLSNGMRADVGNTRILRAEAGTAVSYHMDLQNGTTLEPWLKAAVRQEYADSNQVKVNDDGKFNNDVAGTSGVYQAGIRSSFTPTLSGHLSVSYGNGAGVESPWNTQAGVVWTF" [] ["CCO-OUTER-MEM", "CCO-MEMBRANE", "CCO-EXTRACELLULAR"] 0 [] {} 0 -"EG12052-MONOMER" "holocytochrome c synthase CcmH component" ["YejP", "cytochrome c maturation protein H", "CcmH", "thiol:disulfide oxidoreductase CcmH"] "MRFLLGVLMLMISGSALATIDVLQFKDEAQEQQFRQLTEELRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYGNFVTYDPPLTPLTVLLWVLPVVAIGIGGWVIYARSRRRVRVVPEAFPEQSVPEGKRAGYVVYLPGIVVALIVAGVSYYQTGNYQQVKIWQQATAQAPALLDRALDPKADPLNEEEMSRLALGMRTQLQKNPGDIEGWIMLGRVGMALGNASIATDAYATAYRLDPKNSDAALGYAEALTRSSDPNDNRLGGELLRQLVRTDHSNIRVLSMYAFNAFEQQRFGEAVAAWEMMLKLLPANDTRRAVIERSIAQAMQHLSPQESK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"EG12053-MONOMER" "thiol:disulfide oxidoreductase CcmG" ["YejQ", "cytochrome c maturation protein G", "DsbE", "CcmG"] "MKRKVLLIPLIIFLAIAAALLWQLARNAEGDDPTNLESALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYSKEAAQ" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 0 +"EG12049-MONOMER" "lipopolysaccharide signal transducer LapC" ["LapC", "PbgA", "YejN", "YejM", "lipopolysaccharide assembly protein C"] "MVTHRQRYREKVSQMVSWGHWFALFNILLSLVIGSRYLFIADWPTTLAGRIYSYVSIIGHFSFLVFATYLLILFPLTFIVGSQRLMRFLSVILATAGMTLLLIDSEVFTRFHLHLNPIVWQLVINPDENEMARDWQLMFISVPVILLLELVFATWSWQKLRSLTRRRRFARPLAAFLFIAFIASHVVYIWADANFYRPITMQRANLPLSYPMTARRFLEKHGLLDAQEYQRRLIEQGNPDAVSVQYPLSELRYRDMGTGQNVLLITVDGLNYSRFEKQMPALAGFAEQNISFTRHMSSGNTTDNGIFGLFYGISPSYMDGILSTRTPAALITALNQQGYQLGLFSSDGFTSPLYRQALLSDFSMPSVRTQSDEQTATQWINWLGRYAQEDNRWFSWVSFNGTNIDDSNQQAFARKYSRAAGNVDDQINRVLNALRDSGKLDNTVVIITAGRGIPLSEEEETFDWSHGHLQVPLVIHWPGTPAQRINALTDHTDLMTTLMQRLLHVSTPASEYSQGQDLFNPQRRHYWVTAADNDTLAITTPKKTLVLNNNGKYRTYNLRGERVKDEKPQLSLLLQVLTDEKRFIAN" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12051-MONOMER" "adhesin-like autotransporter YejO" ["YejO"] "MHQSGSVSLCRSAISVLVATALYSPIALASTVEYGETVDGVVLEKDIQLVYGTANNTKINPGGEQHIKEFGVSNNTEINGGYQYIEMNGAAEYSVLNDGYQIVQMGGAANQTTLNNGVLQVYGAANDTTIKGGRLIVEKDGGAVFVAIEKGGLLEVKEGGFAFAVDQKAGGAIKTTTRAMEVFGTNRLGQFDIKNGIANNMLLENGGSLRVEENDFAYNTTVDSGGLLEVMDGGTVTGVDKKAGGKLIVSTNALEVSGPNSKGQFSIKDGVSKNYELDDGSGLIVMEDTQAIDTILDKHATMQSLGKDTGTKVQANAVYDLGRSYQNGSITYSSKAISENMVINNGRANVWAGTMVNVSVRGNDGILEVMKPQINYAPAMLVGKVVVSEGASFRTHGAVDTSKADVSLENSVWTIIADITTTNQNTLLNLANLAMSDANVIMMDEPVTRSSVTASAENFITLTTNTLSGNGNFYMRTDMANHQSDQLNVTGQATGDFKIFVTDTGASPAAGDSLTLVTTGGGDAAFTLGNAGGVVDIGTYEYTLLDNGNHSWSLAENRAQITPSTTDVLNMAAAQPLVFDAELDTVRERLGSVKGVSYDTAMWSSAINTRNNVTTDAGAGFEQTLTGLTLGIDSRFSREESSTIRGLIFGYSHSDIGFDRGGKGNIDSYTLGAYAGWEHQNGAYVDGVVKVDRFANTIHGKMSNGATAFGDYNSNGAGAHVESGFRWVDGLWSVRPYLAFTGFTTDGQDYTLSNGMRADVGNTRILRAEAGTAVSYHMDLQNGTTLEPWLKAAVRQEYADSNQVKVNDDGKFNNDVAGTSGVYQAGIRSSFTPTLSGHLSVSYGNGAGVESPWNTQAGVVWTF" [] ["CCO-EXTRACELLULAR"] 0 [] {} 0 +"EG12052-MONOMER" "holocytochrome c synthase CcmH component" ["YejP", "cytochrome c maturation protein H", "CcmH", "thiol:disulfide oxidoreductase CcmH"] "MRFLLGVLMLMISGSALATIDVLQFKDEAQEQQFRQLTEELRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYGNFVTYDPPLTPLTVLLWVLPVVAIGIGGWVIYARSRRRVRVVPEAFPEQSVPEGKRAGYVVYLPGIVVALIVAGVSYYQTGNYQQVKIWQQATAQAPALLDRALDPKADPLNEEEMSRLALGMRTQLQKNPGDIEGWIMLGRVGMALGNASIATDAYATAYRLDPKNSDAALGYAEALTRSSDPNDNRLGGELLRQLVRTDHSNIRVLSMYAFNAFEQQRFGEAVAAWEMMLKLLPANDTRRAVIERSIAQAMQHLSPQESK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"EG12053-MONOMER" "thiol:disulfide oxidoreductase CcmG" ["YejQ", "cytochrome c maturation protein G", "DsbE", "CcmG"] "MKRKVLLIPLIIFLAIAAALLWQLARNAEGDDPTNLESALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYSKEAAQ" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 "EG12054-MONOMER" "holocytochrome c synthase CcmF component" ["YejR", "CcmF", "cytochrome c heme lyase", "cytochrome c maturation protein F"] "MMPEIGNGLLCLALGIALLLSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNAFVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLDIVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESLLLANNVLLVAAMLVVLLGTLLPLVHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRKIRNLLIIAFISTLVLSLLLPWLFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKTTFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPNWRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAWAVRLYYKPFVRWIWAGGLMMALGGLLCLFDPRYRKRVSPQKTAPEAV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"Heme-b": 1} 1 "EG12069-MONOMER" null ["YojH", "Mqo"] "MKKVTAMLFSMAVGLNAVSMAAKAKASEEQETDVLLIGGGIMSATLGTYLRELEPEWSMTMVERLEGVAQESSNGWNNAGTGHSALMELNYTPQNADGSISIEKAVAINEAFQISRQFWAHQVERGVLRTPRSFINTVPHMSFVWGEDNVNFLRARYAALQQSSLFRGMRYSEDHAQIKEWAPLVMEGRDPQQKVAATRTEIGTDVNYGEITRQLIASLQKKSNFSLQLSSEVRALKRNDDNTWTVTVADLKNGTAQNIRAKFVFIGAGGAALKLLQESGIPEAKDYAGFPVGGQFLVSENPDVVNHHLAKVYGKASVGAPPMSVPHIDTRVLDGKRVVLFGPFATFSTKFLKNGSLWDLMSSTTTSNVMPMMHVGLDNFDLVKYLVSQVMLSEEDRFEALKEYYPQAKKEDWRLWQAGQRVQIIKRDAEKGGVLRLGTEVVSDQQGTIAALLGASPGASTAAPIMLNLLEKVFGDRVSSPQWQATLKAIVPSYGRKLNGDVAATERELQYTSEVLGLNYDKPQAADSTPKPQLKPQPVQKEVADIAL" ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12073-MONOMER" "FAD:protein FMN transferase" ["YojK", "YojL", "ApbE", "Ftp", "flavin transferase"] "MEISFTRVALLAAALFFVGCDQKPQPAKTHATEVTVLEGKTMGTFWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSALMRFNDSQSLSPWPVSEAMADIVTTSLRIGAKTDGAMDITVGPLVNLWGFGPEQQPVQIPSQEQIDAMKAKTGLQHLTVINQSHQQYLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSRGMNGEGLPWRVAIQKPTDKENAVQAVVDINGHGISTSGSYRNYYELDGKRLSHVIDPQTGRPIEHNLVSVTVIAPTALEADAWDTGLMVLGPEKAKEVVRREGLAVYMITKEGDSFKTWMSPQFKSFLVSEKN" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {"MG+2": 1} 1 +"EG12073-MONOMER" "FAD:protein FMN transferase" ["YojK", "YojL", "ApbE", "Ftp", "flavin transferase"] "MEISFTRVALLAAALFFVGCDQKPQPAKTHATEVTVLEGKTMGTFWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSALMRFNDSQSLSPWPVSEAMADIVTTSLRIGAKTDGAMDITVGPLVNLWGFGPEQQPVQIPSQEQIDAMKAKTGLQHLTVINQSHQQYLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSRGMNGEGLPWRVAIQKPTDKENAVQAVVDINGHGISTSGSYRNYYELDGKRLSHVIDPQTGRPIEHNLVSVTVIAPTALEADAWDTGLMVLGPEKAKEVVRREGLAVYMITKEGDSFKTWMSPQFKSFLVSEKN" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {"MG+2": 1} 1 "EG12080-MONOMER" "RecA inhibitor RecX" ["RecX", "OraA", "regulatory protein RecX; inhibitor of RecA"] "MTESTSRRPAYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGISREATEKAMRECDIDWCALARDQATRKYGEPLPTVFSEKVKIQRFLLYRGYLMEDIQEIWRNFAD" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12081-MONOMER" "prepilin-type N-terminal cleavage/methylation domain-containing protein PpdA" ["PpdA"] "MKTQRGYTLIETLVAMLILVMLSASGLYGWQYWQQSQRLWQTASQARDYLLYLREDANWHNRDHSISVIREGTLWCLVSSAAGANTCHGSSPLVFVPRWPEVEMSDLTPSLAFFGLRNTAWAGHIRFKNSTGEWWLVVSPWGRLRLCQQGETEGCL" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 "EG12094-MONOMER" "DNA-binding transcriptional dual regulator SgrR" ["YabN", "SgrR"] "MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNSTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLKIKEIDYDQWHTGEIESDIWLNSANFTLPLDFSVFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVASKAMVPLLHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP" [] ["CCO-PERI-BAC", "CCO-CYTOSOL"] 0 [] {} 0 @@ -1396,55 +1396,55 @@ "EG12097-MONOMER" "purine nucleoside phosphorylase YfiH" ["PgeF", "YfiH", "polyphenol oxidase YfiH"] "MSKLIVPQWPQPKGVAACSSTRIGGVSLPPYDSLNLGAHCGDNPDHVEENRKRLFAAGNLPSKPVWLEQVHGKDVLKLTGEPYASKRADASYSNTPGTVCAVMTADCLPVLFCNRAGTEVAAAHAGWRGLCAGVLEETVSCFADNPENILAWLGPAIGPRAFEVGGEVREAFMAVDAKASAAFIQHGDKYLADIYQLARQRLANVGVEQIFGGDRCTYTENETFFSYRRDKTTGRMASFIWLI" ["CCO-PERI-BAC", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 "EG12098-MONOMER" "23S rRNA pseudouridine1911/1915/1917 synthase" ["YfiI", "RluD", "SfhB"] "MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKDEVDWL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "EG12099-MONOMER" "protein chain elongation factor EF-P" ["Efp", "EF-P"] "MATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTRSGEYVSRVK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 -"EG12101-MONOMER" "ferrous iron transport protein A" ["FeoA"] "MQYTPDTAWKITGFSREISPAYRQKLLSLGMLPGSSFNVVRVAPLGDPIHIETRRVSLVLRKKDLALLEVEAVSC" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"EG12101-MONOMER" "Fe(2+) transport protein A" ["FeoA", "ferrous iron transport protein A"] "MQYTPDTAWKITGFSREISPAYRQKLLSLGMLPGSSFNVVRVAPLGDPIHIETRRVSLVLRKKDLALLEVEAVSC" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12104-MONOMER" "zinc-binding GTPase YeiR" ["YeiR"] "MTRTNLITGFLGSGKTTSILHLLAHKDPNEKWAVLVNEFGEVGIDGALLADSGALLKEIPGGCMCCVNGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQILDLLTAPVYEPWIDLRATLCILDPRLLLDEKSASNENFRDQLAAADIIVANKSDRTTPESEQALQRWWQQNGGDRQLIHSEHGKVDGHLLDLPRRNLAELPASAAHSHQHVVKKGLAALSLPEHQRWRRSLNSGQGYQACGWIFDADTVFDTIGILEWARLAPVERVKGVLRIPEGLVRINRQGDDLHIETQNVAPPDSRIELISSSEADWNALQSALLKLRLATTA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12105-MONOMER" "DNA-binding transcriptional dual regulator YeiE" ["YeiE"] "MHITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQLGVQLFDRVGKRLVVNEHGRLLYPRALALLEQAVEIEQLFREDNGAIRIYASSTIGNYILPAVIARYRHDYPQLPIELSVGNSQDVMQAVLDFRVDIGFIEGPCHSTEIISEPWLEDELVVFAAPTSPLARGPVTLEQLAAAPWILRERGSGTREIVDYLLLSHLPKFEMAMELGNSEAIKHAVRHGLGISCLSRRVIEDQLQAGTLSEVAVPLPRLMRTLWRIHHRQKHLSNALRRFLDYCDPANVPR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12106-MONOMER" "T2SSE family protein" ["HopB", "HofB"] "MNIPQLTALCLRYHGVLLDASEEVVHVAVVDAPSHELLDALHFATTKRIEITCWTRQQMEGHASRTQQTLPVAVQEKHQPKAELLTRTLQSALEQRASDIHIEPADNAYRIRLRIDGVLHPLPDVSPDAGVALTARLKVLGNLDIAEHRLPQDGQFTVELAGNAVSFRIATLPCRGGEKVVLRLLQQVGQALDVNTLGMQPLQLADFAHALQQPQGLVLVTGPTGSGKTVTLYSALQKLNTADINICSVEDPVEIPIAGLNQTQIHPRAGLTFQGVLRALLRQDPDVIMIGEIRDGETAEIAIKAAQTGHLVLSTLHTNSTCETLVRLQQMGVARWMLSSALTLVIAQRLVRKLCPHCRRQQGEPIHIPDNVWPSPLPHWQAPGCVHCYHGFYGRTALFEVLPITPVIRQLISANTDVESLETHARQAGMRTLFENGCLAVEQGLTTFEELIRVLGMPHGE" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "EG12107-MONOMER" "prepilin-type N-terminal cleavage/methylation domain-containing protein PpdD" ["PpdD", "prepilin peptidase dependent protein"] "MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTRYVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN" [] ["CCO-EXTRACELLULAR", "CCO-MEMBRANE", "CCO-PILUS"] 0 [] {} 0 "EG12108-MONOMER" "DNA-binding transcriptional dual regulator NorR" ["NorR", "YgaA"] "MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12110-MONOMER" "DUF218 domain-containing protein YdcF" ["YdcF"] "MNITPFPTLSPATIDAINVIGQWLAQDDFSGEVPYQADCVILAGNAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEATILADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALLNQAVERVHTAIVVQDPTMQRRTMATFRRMTGDNPDAPRWLSYPGFVPQLGNNADSVIFINQLQGLWPVERYLSLLTGELPRLRDDSDGYGPRGRDFIVHVDFPAEVIHAWQTLKHDAVLIEAMESRSLR" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 -"EG12111-MONOMER" "murein hydrolase activator NlpD" ["NlpD", "NlpD divisome associated factor, activates peptidoglycan hydrolase"] "MSAGSPKFTVRRIAALSLVSLWLAGCSDTSNPPAPVSSVNGNAPANTNSGMLITPPPKMGTTSTAQQPQIQPVQQPQIQATQQPQIQPVQPVAQQPVQMENGRIVYNRQYGNIPKGSYSGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPITGGNAITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPTATTVTAPVTVPTASTTEPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] 0 [] {} 0 +"EG12111-MONOMER" "murein hydrolase activator NlpD" ["NlpD", "NlpD divisome associated factor, activates peptidoglycan hydrolase"] "MSAGSPKFTVRRIAALSLVSLWLAGCSDTSNPPAPVSSVNGNAPANTNSGMLITPPPKMGTTSTAQQPQIQPVQQPQIQATQQPQIQPVQPVAQQPVQMENGRIVYNRQYGNIPKGSYSGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPITGGNAITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPTATTVTAPVTVPTASTTEPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR" ["CCO-OUTER-MEM"] ["CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] 0 [] {} 0 "EG12113-MONOMER" "DNA utilization protein HofQ" ["HopQ", "HofQ", "protein involved in utilization of DNA as a carbon source"] "MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLITRQEGNILSVHSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLVSSE" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 "EG12114-MONOMER" "peptide chain release factor RF3" ["Tos", "MiaD", "PrfC", "RF-3"] "MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSMVNLRLAQERYPDVQFHQTREH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "EG12115-MONOMER" "pyrimidine 5'-nucleotidase YjjG" ["YjjG"] "MKWDWIFFDADETLFTFDSFTGLQRMFLDYSVTFTAEDFQDYQAVNKPLWVDYQNGAITSLQLQHGRFESWAERLNVEPGKLNEAFINAMAEICTPLPGAVSLLNAIRGNAKIGIITNGFSALQQVRLERTGLRDYFDLLVISEEVGVAKPNKKIFDYALEQAGNPDRSRVLMVGDTAESDILGGINAGLATCWLNAHHREQPEGIAPTWTVSSLHELEQLLCKH" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "EG12116-MONOMER" "DNA-binding transcriptional repressor AcrR" ["YbaH", "AcrR"] "MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"EG12117-MONOMER" "outer membrane protein X" ["YbiG", "OmpP", "OmpX"] "MKKIACLSALAAVLAFTAGTSVAATSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"EG12117-MONOMER" "outer membrane protein X" ["YbiG", "OmpP", "OmpX"] "MKKIACLSALAAVLAFTAGTSVAATSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 0 "EG12119-MONOMER" "NTF2-like domain-containing protein YchJ" ["YchJ"] "MSQLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQDADYLIKTWHPSCGAAALRAELMAGFAHTEWLGLTVFEHCWQDADNIGFVSFVARFTEGGKTGAIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12120-MONOMER" "putative patatin-like phospholipase RssA" ["RssA", "YchK"] "MRKIKIGLALGSGAARGWSHIGVINALKKVGIEIDIVAGCSIGSLVGAAYACDRLSALEDWVTSFSYWDVLRLMDLSWQRGGLLRGERVFNQYREIMPETEIENCSRRFAAVATNLSTGRELWFTEGDLHLAIRASCSIPGLMAPVAHNGYWLVDGAVVNPIPISLTRALGADIVIAVDLQHDAHLMQQDLLSFNVSEENSENGDSLPWHARLKERLGSITTRRAVTAPTATEIMTTSIQVLENRLKRNRMAGDPPDILIQPVCPQISTLDFHRAHAAIAAGQLAVERKMDELLPLVRTNI" [] ["CCO-EXTRACELLULAR", "CCO-CYTOSOL"] 0 [] {} 0 "EG12121-MONOMER" "regulator of RpoS" ["SprE", "YchL", "RssB", "Hnr"] "MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12122-MONOMER" "protein YggI" ["YggI", "SprT"] "MKTSRLPIAIQQAVMRRLREKLAQANLKLGRNYPEPKLSYTQRGTSAGTAWLESYEIRLNPVLLLENSEAFIEEVVPHELAHLLVWKHFGRVAPHGKEWKWMMENVLGVPARRTHQFELQSVRRNTFPYRCKCQEHQLTVRRHNRVVRGEAVYRCVHCGEQLVAK" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 "EG12123-MONOMER" "DNA-binding transcriptional dual regulator LrhA" ["GenR", "LrhA"] "MISANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQQMQRLEQLVGKELFARHGRNKLLTEHGIQLLGYARKILRFNDEACSSLMFSNLQGVLTIGASDESADTILPFLLNRVSSVYPKLALDVRVKRNAYMAEMLESQEVDLMVTTHRPSAFKALNLRTSPTHWYCAAEYILQKGEPIPLVLLDDPSPFRDMVLATLNKADIPWRLAYVASTLPAVRAAVKAGLGVTARPVEMMSPDLRVLSGVDGLPPLPDTEYLLCYDPSSNNELAQVIYQAMESYHNPWQYSPMSAPEGDDSLLIERDIE" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12128-MONOMER" null ["UmpA", "Lgt"] "MTSSYLHFPEFDPVIFSIGPVALHWYGLMYLVGFIFAMWLATRRANRPGSGWTKNEVENLLYAGFLGVFLGGRIGYVLFYNFPQFMADPLYLFRVWDGGMSFHGGLIGVIVVMIIFARRTKRSFFQVSDFIAPLIPFGLGAGRLGNFINGELWGRVDPNFPFAMLFPGSRTEDILLLQTNPQWQSIFDTYGVLPRHPSQLYELLLEGVVLFIILNLYIRKPRPMGAVSGLFLIGYGAFRIIVEFFRQPDAQFTGAWVQYISMGQILSIPMIVAGVIMMVWAYRRSPQQHVS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG12130-MONOMER" "iron-sulfur cluster biosynthesis chaperone HscA" ["Hsc", "HscA", "Hsc66", "chaperone, member of Hsp70 protein family", "chaperone for [Fe-S] cluster biosynthesis"] "MALLQISEPGLSAAPHQRRLAAGIDLGTTNSLVATVRSGQAETLADHEGRHLLPSVVHYQQQGHSVGYDARTNAALDTANTISSVKRLMGRSLADIQQRYPHLPYQFQASENGLPMIETAAGLLNPVRVSADILKALAARATEALAGELDGVVITVPAYFDDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSRGVFEVLATGGDSALGGDDFDHLLADYIREQAGIPDRSDNRVQRELLDAAIAAKIALSDADSVTVNVAGWQGEISREQFNELIAPLVKRTLLACRRALKDAGVEADEVLEVVMVGGSTRVPLVRERVGEFFGRPPLTSIDPDKVVAIGAAIQADILVGNKPDSEMLLLDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKGHSVDEV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 +"EG12128-MONOMER" null ["UmpA", "Lgt"] "MTSSYLHFPEFDPVIFSIGPVALHWYGLMYLVGFIFAMWLATRRANRPGSGWTKNEVENLLYAGFLGVFLGGRIGYVLFYNFPQFMADPLYLFRVWDGGMSFHGGLIGVIVVMIIFARRTKRSFFQVSDFIAPLIPFGLGAGRLGNFINGELWGRVDPNFPFAMLFPGSRTEDILLLQTNPQWQSIFDTYGVLPRHPSQLYELLLEGVVLFIILNLYIRKPRPMGAVSGLFLIGYGAFRIIVEFFRQPDAQFTGAWVQYISMGQILSIPMIVAGVIMMVWAYRRSPQQHVS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12130-MONOMER" "[Fe-S] cluster biosynthesis chaperone HscA" ["Hsc", "HscA", "Hsc66", "chaperone, member of Hsp70 protein family", "chaperone for [Fe-S] cluster biosynthesis"] "MALLQISEPGLSAAPHQRRLAAGIDLGTTNSLVATVRSGQAETLADHEGRHLLPSVVHYQQQGHSVGYDARTNAALDTANTISSVKRLMGRSLADIQQRYPHLPYQFQASENGLPMIETAAGLLNPVRVSADILKALAARATEALAGELDGVVITVPAYFDDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSRGVFEVLATGGDSALGGDDFDHLLADYIREQAGIPDRSDNRVQRELLDAAIAAKIALSDADSVTVNVAGWQGEISREQFNELIAPLVKRTLLACRRALKDAGVEADEVLEVVMVGGSTRVPLVRERVGEFFGRPPLTSIDPDKVVAIGAAIQADILVGNKPDSEMLLLDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKGHSVDEV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "EG12131-MONOMER" "[Fe-S] cluster biosynthesis co-chaperone HscB" ["YfhE", "HscB", "Hsc20", "Hsc20 co-chaperone that acts with Hsc66 in IscU iron-sulfur cluster assembly", "co-chaperone for [Fe-S] cluster biosynthesis"] "MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTVRKLRFLDKLRSSAEQLEEKLLDF" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12132-MONOMER" "iron-sulfur cluster insertion protein IscA" ["IscA", "YfhF", "iron-sulfur cluster assembly protein"] "MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFHV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"FE+2": 1} 1 "EG12133-MONOMER" "oxidoreductase UcpA" ["YfeF", "UcpA"] "MGKLTGKTALITGALQGIGEGIARTFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPMRRLADPLEVGELAAFLASDESSYLTGTQNVIDGGSTLPETVSVGI" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12134-MONOMER" "L-threonine/L-homoserine exporter" ["YbiF", "RhtA"] "MPGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVGAPGVTALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTPIQLLALGAIIAASMGSTLTVRKESKIKELDIN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG12137-MONOMER" "sensor lipoprotein NlpE" ["NlpE", "CutF", "outer membrane lipoprotein NlpE"] "MVKKAIVTAMAVISLFTLMGCNNRAEVDTLSPAQAAELKPMPQSWRGVLPCADCEGIETSLFLEKDGTWVMNERYLGAREEPSSFASYGTWARTADKLVLTDSKGEKSYYRAKGDALEMLDREGNPIESQFNYTLEAAQSSLPMTPMTLRGMYFYMADAATFTDCATGKRFMVANNAELERSYLAARGHSEKPVLLSVEGHFTLEGNPDTGAPTKVLAPDTAGKFYPNQDCSSLGQ" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-OUTER-MEM"] 0 [] {} 0 -"EG12138-MONOMER" "peptidase C92 family protein YaeF" ["YaeK", "YaeF"] "MDKPKAYCRLFLPSFLLLSACTVDISQPDPSATAVDAEAKTWAVKFQHQSSFTEQSIKEITAPDLKPGDLLFSSSLGVTSFGIRVFSTSSVSHVAIFLGDNNVAEATGAGVQIVSLKKAMKHSDKLFVLRVPDLTPQQATDITAFANKIKDSGYNYRGIVEFIPFMVTRQMCSLNPFSEDFRQQCVSGLAKAQLSSVGEGDKKSWFCSEFVTDAFAKAGHPLTLAQSGWISPADLMHMRIGDVSAFKPETQLQYVGHLKPGIYIKAGRFVGLTR" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 0 +"EG12137-MONOMER" "sensor lipoprotein NlpE" ["NlpE", "CutF", "outer membrane lipoprotein NlpE"] "MVKKAIVTAMAVISLFTLMGCNNRAEVDTLSPAQAAELKPMPQSWRGVLPCADCEGIETSLFLEKDGTWVMNERYLGAREEPSSFASYGTWARTADKLVLTDSKGEKSYYRAKGDALEMLDREGNPIESQFNYTLEAAQSSLPMTPMTLRGMYFYMADAATFTDCATGKRFMVANNAELERSYLAARGHSEKPVLLSVEGHFTLEGNPDTGAPTKVLAPDTAGKFYPNQDCSSLGQ" ["CCO-OUTER-MEM"] ["CCO-PERI-BAC", "CCO-OUTER-MEM"] 0 [] {} 0 +"EG12138-MONOMER" "peptidase C92 family protein YaeF" ["YaeK", "YaeF"] "MDKPKAYCRLFLPSFLLLSACTVDISQPDPSATAVDAEAKTWAVKFQHQSSFTEQSIKEITAPDLKPGDLLFSSSLGVTSFGIRVFSTSSVSHVAIFLGDNNVAEATGAGVQIVSLKKAMKHSDKLFVLRVPDLTPQQATDITAFANKIKDSGYNYRGIVEFIPFMVTRQMCSLNPFSEDFRQQCVSGLAKAQLSSVGEGDKKSWFCSEFVTDAFAKAGHPLTLAQSGWISPADLMHMRIGDVSAFKPETQLQYVGHLKPGIYIKAGRFVGLTR" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 "EG12139-MONOMER" "outer membrane lipoprotein QseG" ["QseG", "YfhG"] "MRHIFQRLLPRRLWLAGLPCLALLGCVQNHNKPAIDTPAEEKIPVYQLADYLSTECSDIWALQGKSTETNPLYWLRAMDCADRLMPAQSRQQARQYDDGSWQNTFKQGILLADAKITPYERRQLVARIEALSTEIPAQVRPLYQLWRDGQALQLQLAEERQRYSKLQQSSDSELDTLRQQHHVLQQQLELTTRKLENLTDIERQLSTRKPAGNFSPDTPHESEKPAPSTHEVTPDEP" ["CCO-PERI-BAC"] [] 0 [] {} 0 "EG12140-MONOMER" "DNA-binding transcriptional activator PunR" ["PunR", "putative LysR family DNA-binding transcriptional regulator YdhB", "YdhB"] "MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12146-MONOMER" "RNase adaptor protein RapZ" ["RapZ", "YhbJ"] "MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARTLADREISAAVSIDVRNMPESPEIFEQAMSNLPDAFSPQLLFLDADRNTLIRRYSDTRRLHPLSSKNLSLESAIDKESDLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKRERELTMVFESFGFKHGIPIDADYVFDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNFIYQTRSYLELWLPMLETNNRSYLTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRHRTLEKRKP" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG12147-MONOMER" "phosphorelay protein NPr" ["YhbK", "Npr", "RpoR", "PtsO", "phosphocarrier protein NPr"] "MTVKQTVEITNKLGMHARPAMKLFELMQGFDAEVLLRNDEGTEAEANSVIALLMLDSAKGRQIEVEATGPQEEEALAAVIALFNSGFDED" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12154-MONOMER" "Rac prophage; phage superinfection exclusion protein" ["SieB"] "MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFSFVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFLKTGNLIITSPCRNPVMKKLERKGIIQHQSDSANCSYYLVTEKYSHFMKLFWNSRSRRFNR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12154-MONOMER" "Rac prophage; phage superinfection exclusion protein" ["SieB"] "MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFSFVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFLKTGNLIITSPCRNPVMKKLERKGIIQHQSDSANCSYYLVTEKYSHFMKLFWNSRSRRFNR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12155-MONOMER" "Rac prophage; inhibitor of FtsZ" ["YdaD", "Kil", "KilR", "killing protein KilR"] "MIAHHFGTDEIPRQCVTPGDYVLHEGRTYIASANNIKKRKLYIRNLTTKTFITDRMIKVFLGRDGLPVKAESW" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12158-MONOMER" "nucleoid-associated protein RdgC" ["YaiD", "RdgC"] "MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQR" ["CCO-CYTOSOL", "CCO-BAC-NUCLEOID"] ["CCO-CYTOSOL", "CCO-BAC-NUCLEOID"] 0 [] {} 0 "EG12159-MONOMER" "nucleoside phosphorylase PpnP" ["PpnP", "YaiE"] "MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEEMTVISGALNVLLPDATDWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"EG12161-MONOMER" "putative porin domain-containing protein EaeH" ["EaeH", "attaching and effacing protein homolog, pathogenesis factor"] "MSHYKTGHKQPRFRYSVLARCVAWANISVQVLFPLAVTFTPVMAARAQHAVQPRLSMGNTTVTADNNVEKNVASFAANAGTFLSSQPDSDATRNFITGMATAKANQEIQEWLGKYGTARVKLNVDKDFSLKDSSLEMLYPIYDTPTNMLFTQGAIHRTDDRTQSNIGFGWRHFSGNDWMAGVNTFIDHDLSRSHTRIGVGAEYWRDYLKLSANGYIRASGWKKSPDIEDYQERPANGWDIRAEGYLPAWPQLGASLMYEQYYGDEVGLFGKDKRQKDPHAISAEVTYTPVPLTQQ" [] ["CCO-OUTER-MEM", "CCO-CYTOSOL"] 0 [] {} 0 +"EG12161-MONOMER" "putative porin domain-containing protein EaeH" ["EaeH", "attaching and effacing protein homolog, pathogenesis factor"] "MSHYKTGHKQPRFRYSVLARCVAWANISVQVLFPLAVTFTPVMAARAQHAVQPRLSMGNTTVTADNNVEKNVASFAANAGTFLSSQPDSDATRNFITGMATAKANQEIQEWLGKYGTARVKLNVDKDFSLKDSSLEMLYPIYDTPTNMLFTQGAIHRTDDRTQSNIGFGWRHFSGNDWMAGVNTFIDHDLSRSHTRIGVGAEYWRDYLKLSANGYIRASGWKKSPDIEDYQERPANGWDIRAEGYLPAWPQLGASLMYEQYYGDEVGLFGKDKRQKDPHAISAEVTYTPVPLTQQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12163-MONOMER" "16S rRNA m5C967 methyltransferase" ["YhdB", "RsmB", "Fmv", "Fmu", "RrmB", "Sun"] "MKKQRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYPEQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIKK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12165-MONOMER" "chromosome partitioning protein MukF" ["KicB", "MukF", "Ca2+-binding protein involved in chromosome partitioning"] "MSEFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREFSTLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIRTAIDMDKNRVFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALRDEEVTGELPEDLEYEEFNEIREQLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQYPRARHFDVARIVIDQAVRLGVAQADFTGLPAKWQPINDYGAKVQAHVIDKY" [] ["CCO-BAC-NUCLEOID", "CCO-CYTOSOL"] 0 [] {} 1 -"EG12166-MONOMER" "envelope biogenesis factor" ["ElyC", "YcbC"] "MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTGKIFISIGWLALLLLSLQPVADRLLRPIESTYPTWNNSQKVDYIVVLGGGYTWNPQWAPSSNLINNSLPRLNEGIRLWRENPGSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLDLPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPLNPWERAIPSPVWLMHSDRVGYETLGRIWQWLKGSSGEPRQE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12166-MONOMER" "envelope biogenesis factor" ["ElyC", "YcbC"] "MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTGKIFISIGWLALLLLSLQPVADRLLRPIESTYPTWNNSQKVDYIVVLGGGYTWNPQWAPSSNLINNSLPRLNEGIRLWRENPGSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLDLPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPLNPWERAIPSPVWLMHSDRVGYETLGRIWQWLKGSSGEPRQE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12167-MONOMER" "tRNA cmo5U34 methyltransferase" ["CmoM", "YcbD", "SmtA"] "MQDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPAQVYLWLEEAGWQIMGKTGVRVFHDYLREKHQQRDCYEALLELETRYCRQEPYITLGRYIHVTARKPQSKDKV" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG12169-MONOMER" "cytochrome c maturation protein D" ["YojM"] "MTPAFASWNEFFAMGGYAFFVWLAVVMTVIPLVVLVVHSVMQHRAILRGVAQQRAREARLRAAQQQEAA" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EG12171-MONOMER" "DUF3029 domain-containing protein YjjI" ["YjjH", "YjjI"] "MPTSHENALQQRCQQIVTSPVLSPEQKRHFLALEAENNLPYPQLPAEARRALDEGVICDMFEGHAPYKPRYVLPDYARFLANGSEWLELEGAKDLDDALSLLTILYHHVPSVTSMPVYLGQLDALLQPYVRILTQDEIDVRIKRFWRYLDRTLPDAFMHANIGPSDSPITRAILRADAELKQVSPNLTFIYDPEITPDDLLLEVAKNICECSKPHIANGPVHDKIFTKGGYGIVSCYNSLPLAGGGSTLVRLNLKAIAERSESLDDFFTRTLPHYCQQQIAIIDARCEFLYQQSHFFENSFLVKEGLINPERFVPMFGMYGLAEAVNLLCEKEGIAARYGKEAAANEVGYRISAQLAEFVANTPVKYGWQKRAMLHAQSGISSDIGTTPGARLPYGDEPDPITHLQTVAPHHAYYYSGISDILTLDETIKRNPQALVQLCLGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYRAEGSRTNTTWLGEEAARNTRILERQPRVISHEQQMRFSQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12172-MONOMER" "purine nucleoside phosphoramidase" ["YcfF", "HinT"] "MAEETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPLGPMLAHKGL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"EG12173-MONOMER" "type II secretion system protein GspM" ["HopZ", "GspM", "PshM"] "MIKSWWAEKSTSEKQIVAALAVLSLGVFCWLGVIKPIDTYIAEHQSHAQKIKKDIKWMQDQASTHGLLGHPALTQPIKNILLEEAKRENLAITLENGPDNTLTIHPVTAPLENVSRWLTTAQVTYGIVIEDLQFTLAGNEEITLRHLSFREQQ" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 +"EG12173-MONOMER" "cryptic type II secretion system protein GspM" ["HopZ", "GspM", "PshM"] "MIKSWWAEKSTSEKQIVAALAVLSLGVFCWLGVIKPIDTYIAEHQSHAQKIKKDIKWMQDQASTHGLLGHPALTQPIKNILLEEAKRENLAITLENGPDNTLTIHPVTAPLENVSRWLTTAQVTYGIVIEDLQFTLAGNEEITLRHLSFREQQ" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "EG12176-MONOMER" "DNA-binding transcriptional regulator DicD" ["YjdC", "DicD", "DicD, YjdC"] "MQREDVLGEALKLLELQGIANTTLEMVAERVDYPLDELRRFWPDKEAILYDALRYLSQQIDVWRRQLMLDETQTAEQKLLARYQALSECVKNNRYPGCLFIAACTFYPDPGHPIHQLADQQKSAAYDFTHELLTTLEVDDPAMVAKQMELVLEGCLSRMLVNRSQADVDTAHRLAEDILRFARCRQGGALT" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12177-MONOMER" "copper binding protein CutA" ["CutA"] "MLDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR" [] ["CCO-CYTOSOL"] 0 [] {"CU+2": 1} 1 "EG12179-MONOMER" "transcription antiterminator and regulator of RNA stability CspE" ["MsmC", "GicA", "CspE"] "MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVIAL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 -"EG12180-MONOMER" "Lipid A palmitoyltransferase" ["YbeG", "CrcA", "PagP"] "MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"EG12180-MONOMER" "Lipid A palmitoyltransferase" ["YbeG", "CrcA", "PagP"] "MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 0 "EG12181-MONOMER" "glutaredoxin 4" ["YdhD", "GrxD", "Grx4"] "MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKSEEPDAE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"CPD-6": 1} 1 -"EG12182-MONOMER" "putative lipoprotein YajG" ["YajG"] "MFKKILFPLVALFMLAGCAKPPTTIEVSPTITLPQQDPSLMGVTVSINGADQRTDQALAKVTRDNQIVTLTASRDLRFLLQEVLEKQMTARGYMVGPNGPVNLQIIVSQLYADVSQGNVRYNIATKADIAIIATAQNGNKMTKNYRASYNVEGAFQASNKNIADAVNSVLTDTIADMSQDTSIHEFIKQNAR" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"EG12182-MONOMER" "putative lipoprotein YajG" ["YajG"] "MFKKILFPLVALFMLAGCAKPPTTIEVSPTITLPQQDPSLMGVTVSINGADQRTDQALAKVTRDNQIVTLTASRDLRFLLQEVLEKQMTARGYMVGPNGPVNLQIIVSQLYADVSQGNVRYNIATKADIAIIATAQNGNKMTKNYRASYNVEGAFQASNKNIADAVNSVLTDTIADMSQDTSIHEFIKQNAR" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12188-MONOMER" "phosphoenolpyruvate-protein phosphotransferase PtsP" ["YgdO", "YgdF", "PtsP", "EINtr", "EInitrogen", "enzyme INtr"] "MLTRLREIVEKVASAPRLNEALNILVTDICLAMDTEVCSVYLADHDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRLAEPINLADAQKHPSFKYIPSVKEERFRAFLGVPIIQRRQLLGVLVVQQRELRQYDESEESFLVTLATQMAAILSQSQLTALFGQYRQTRIRALPAAPGVAIAEGWQDATLPLMEQVYQASTLDPALERERLTGALEEAANEFRRYSKRFAAGAQKETAAIFDLYSHLLSDTRLRRELFAEVDKGSVAEWAVKTVIEKFAEQFAALSDNYLKERAGDLRALGQRLLFHLDDANQGPNAWPERFILVADELSATTLAELPQDRLVGVVVRDGAANSHAAIMVRALGIPTVMGADIQPSVLHRRTLIVDGYRGELLVDPEPVLLQEYQRLISEEIELSRLAEDDVNLPAQLKSGERIKVMLNAGLSPEHEEKLGSRIDGIGLYRTEIPFMLQSGFPSEEEQVAQYQGMLQMFNDKPVTLRTLDVGADKQLPYMPISEENPCLGWRGIRITLDQPEIFLIQVRAMLRANAATGNLNILLPMVTSLDEVDEARRLIERAGREVEEMIGYEIPKPRIGIMLEVPSMVFMLPHLAKRVDFISVGTNDLTQYILAVDRNNTRVANIYDSLHPAMLRALAMIAREAEIHGIDLRLCGEMAGDPMCVAILIGLGYRHLSMNGRSVARAKYLLRRIDYAEAENLAQRSLEAQLATEVRHQVAAFMERRGMGGLIRGGL" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "EG12190-MONOMER" "putative DNA-binding transcriptional regulator EutR" ["EutR", "YfeG"] "MKKTRTANLHHLYHEPLPENLKLTPKVEVDNVHQRQTTDVYEHALTITAWQQIYDQLHPGKFHGEFTEILLDDIQVFREYTGLALRQSCLVWPNSFWFGIPATRGEQGFIGSQCLGSAEIATRPGGTEFELSTPDDYTILGVVLSEDVITRQANFLHNPDRVLHMLRNQSALEVKEQHKAALWGFVQQALATFCENPENLHQPAVRKVLGDNLLMAMGAMLEEAQPMVTAESISHQSYRRLLSRAREYVLENMSEPVTVLDLCNQLHVSRRTLQNAFHAILGIGPNAWLKRIRLNAVRRELISPWSQSMTVKDAAMQWGFWHLGQFATDYQQLFSEKPSLTLHQRMREWG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12193-MONOMER" "curved DNA-binding protein" ["CbpA", "co-chaperone CbpA"] "MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA" ["CCO-BAC-NUCLEOID"] ["CCO-BAC-NUCLEOID", "CCO-CYTOSOL"] 0 [] {} 0 @@ -1468,14 +1468,14 @@ "EG12213-MONOMER" "DUF2500 domain-containing protein YhhM" ["YhhM"] "MSKPPLFFIVIIGLIVVAASFRFMQQRREKADNDMAPLQQKLVVVSNKREKPINDRRSRQQEVTPAGTSIRYEASFKPQSGGMEQTFRLDAQQYHALTVGDKGTLSYKGTRFVSFVGEQ" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12214-MONOMER" "PF07947 family protein YhhN" ["YhhN", "conserved inner membrane enzyme YhhN"] "MLWSFIAVCLSAWLSVDASYRGPTWQRWVFKPLTLLLLLLLAWQAPMFDAISYLVLAGLCASLLGDALTLLPRQRLMYAIGAFFLSHLLYTIYFASQMTLSFFWPLPLVLLVLGALLLAIIWTRLEEYRWPICTFIGMTLVMVWLAGELWFFRPTAPALSAFVGASLLFISNFVWLGSHYRRRFRADNAIAAACYFAGHFLIVRSLYL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12216-MONOMER" "sulfur transfer protein TusA" ["YhhP", "SirA", "TusA"] "MTDLFSSPDHTLDALGLRCPEPVMMVRKTVRNMQPGETLLIIADDPATTRDIPGFCTFMEHELVAKETDGLPYRYLIRKGG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12217-MONOMER" "queuosine precursor transporter" ["YhhQ"] "MNVFSQTQRYKALFWLSLFHLLVITSSNYLVQLPVSILGFHTTWGAFSFPFIFLATDLTVRIFGAPLARRIIFAVMIPALLISYVISSLFYMGSWQGFGALAHFNLFVARIATASFMAYALGQILDVHVFNRLRQSRRWWLAPTASTLFGNVSDTLAFFFIAFWRSPDAFMAEHWMEIALVDYCFKVLISIVFFLPMYGVLLNMLLKRLADKSEINALQAS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG12220-MONOMER" "putative transporter YhhT" ["YhhT"] "METPQPDKTGMHILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRPVAITIVVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLHRALKGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAFLLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMSTMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKIWMETTKGGSKLAILLGPGRPKSRLPG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12217-MONOMER" "queuosine precursor transporter" ["YhhQ"] "MNVFSQTQRYKALFWLSLFHLLVITSSNYLVQLPVSILGFHTTWGAFSFPFIFLATDLTVRIFGAPLARRIIFAVMIPALLISYVISSLFYMGSWQGFGALAHFNLFVARIATASFMAYALGQILDVHVFNRLRQSRRWWLAPTASTLFGNVSDTLAFFFIAFWRSPDAFMAEHWMEIALVDYCFKVLISIVFFLPMYGVLLNMLLKRLADKSEINALQAS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12220-MONOMER" "putative transporter YhhT" ["YhhT"] "METPQPDKTGMHILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRPVAITIVVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLHRALKGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAFLLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMSTMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKIWMETTKGGSKLAILLGPGRPKSRLPG" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12221-MONOMER" "holo-[acyl carrier protein] synthase 2" ["YhhU", "AcpT", "o195", "ORF195"] "MYRIVLGKVSTLSAAPLPPGLREQAPQGPRRERWLAGRALLSHTLSPLPEIIYGEQGKPAFAPEMPLWFNLSHSGDDIALLLSDEGEVGCDIEVIRPRANWRWLANAVFSLGEHAEMDAVHPDQQLEMFWRIWTRKEAIVKQRGGSAWQIVSVDSTYHSSLSVSHCQLENLSLAICTPTPFTLTADSVQWIDSVN" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12224-MONOMER" "putative membrane fusion protein YhiI" ["YhiI"] "MDKSKRHLAWWVVGLLAVAAIVAWWLLRPAGVPEGFAVSNGRIEATEVDIASKIAGRIDTILVKEGKFVREGEVLAKMDTRVLQEQRLEAIAQIKEAQSAVAAAQALLEQRQSETRAAQSLVNQRQAELDSVAKRHTRSRSLAQRGAISAQQLDDDRAAAESARAALESAKAQVSASKAAIEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVLAAGGRVLNMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQFTPKTVETSDERLKLMFRVKARIPPELLQQHLEYVKTGLPGVAWVRVNEELPWPDDLVVRLPQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12225-MONOMER" "DUF4049 domain-containing protein YhiJ" ["YhiJ"] "MKIGTVAGTNDSTTTIATNDMVQEHVTNFTKELFGYIANGIGDDISSIARTMLGEVVEKIDDWQIERFQQSIQDDKISFTIQTDHSEKYSMLSGMRAHILRRNNNYQFIVTINSKNYGCSLDNTDINWCSIVYLLNNMTVNDNANDVAVTESYKPIWNWKISQYNVSDIKFETMIKPQFADRIYFSNCLPVDPTSTRPTYFGDTDGSVGAVLFALFATGHLGIMAEGENFLSQLLNIEDEVLNVLLRENFNEQLNTNVNTIISILNRRDIILESLQPYLVINKDAVTPCTFLGDQTGDRFSNICGDQFIIDLLKRIMSINENVHVLAGNHETNCNGNYMQNFTRMKPLDEDTYSGIKDYPVCFYDPKYKIMANHHGITFDDQRKRYIIGPITVSIDEMTNALDPVELAAIINKKHHAIINGKKFKTSRAISCRSFNRYFSVSTDYRPKLEALLACSQMLGINQVVAHNGNGGRERIGETGTVLGLNARDSKHAGRMFSMHNCQINPGAGPEITTPWKSYQHEKNRNGLMPLIRRRTMLQL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12227-MONOMER" "DUF4049 domain-containing protein YhiL" ["YhiK", "YhiL"] "MKAIDNQIRNISSSHQDKHSDKVNSHQHHGKVDKTHRAKIVEFDKLDNDSQIDNDFGLHIIYFLQHGHWKVNDRSHQMEKVWFYNSEPSIDIQEYNRFADNTTDTFIFTIIPDNNHVLKLSSPITVTVECKGGYYFINSSGDKSDIIYKVDGLSIIARNFFTLLSGNFKPDWRWDVSKETFTKEKFDSYVKSVFSKIDFYKQCGVINPQNANTAYFGDTDGRVGAVLYALLVSGHIGIREKGWSLLCELLKHEEMASSAYKHKNNKVLYDLLNTRDMILNELHQHVFLKDDAITPCIFLGDHTGDRFSTIFGDKYILTLLNSMRNMEGNKDSRINKNVVVLAGNHEINFNGNYTARLANHKLSAGDTYNLIKTLDVCNYDSERQVLTSHHGIIRDEEKNVIVSVLCRFHLIR*KILLILRN*PIFLIKNIKNTWMILYSI*SEAIL*NPHLYMLIILITLLISDQHVNVSSYVGRHSKVKTPANTLDKNMGIMGPG*IIINNLIMVLWG*IP*RKHVIKIIK*FIPQGLVVFNY" [] [] 0 [] {} 0 "EG12229-MONOMER" "putative oxidoreductase YhiN" ["YhiN"] "MERFDAIIIGAGAAGMFCSALAGQAGRRVLLIDNGKKPGRKILMSGGGRCNFTNLYVEPGAYLSQNPHFCKSALARFTQWDFIDLVNKHGIAWHEKTLGQLFCDDSAQQIVDMLVDECEKGNVTFRLRSEVLSVAKDETGFTLDLNGMTVGCEKLVIATGGLSMPGLGASPFGYKIAEQFGLNVLPTRAGLVPFTLHKPLLEELQVLAGVAVPSVITAENGTVFRENLLFTHRGLSGPAVLQISSYWQPGEFVSINLLPDVDLETFLNEQRNAHPNQSLKNTLAVHLPKRLVERLQQLGQIPDVSLKQLNVRDQQALISTLTDWRVQPNGTEGYRTAEVTLGGVDTNELSSRTMEARKVPGLYFIGEVMDVTGWLGGYNFQWAWSSAWACAQDLIAAKSS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12231-MONOMER" "universal stress protein B" ["YhiO", "UspB", "putative universal stress (ethanol tolerance) protein B"] "MISTVALFWALCVVCIVNMARYFSSLRALLVVLRNCDPLLYQYVDGGGFFTSHGQPNKQVRLVWYIYAQRYRDHHDDEFIRRCERVRRQFILTSALCGLVVVSLIALMIWH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"EG12231-MONOMER" "universal stress protein B" ["YhiO", "UspB", "putative universal stress (ethanol tolerance) protein B"] "MISTVALFWALCVVCIVNMARYFSSLRALLVVLRNCDPLLYQYVDGGGFFTSHGQPNKQVRLVWYIYAQRYRDHHDDEFIRRCERVRRQFILTSALCGLVVVSLIALMIWH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12233-MONOMER" "16S rRNA m2G1516 methyltransferase" ["RsmJ", "YhiQ"] "MKICLIDETGTGDGALSVLAARWGLEHDEDNLMALVLTPEHLELRKRDEPKLGGIFVDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLATKRVVVKRPDYAPPLANVATPNAVVTKGHRFDIYAGTPV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12234-MONOMER" "23S rRNA m6A2030 methyltransferase" ["RlmJ", "YhiR"] "MLSYRHSFHAGNHADVLKHTVQSLIIESLKEKDKPFLYLDTHAGAGRYQLGSEHAERTGEYLEGIARIWQQDDLPAELEAYINVVKHFNRSGQLRYYPGSPLIARLLLREQDSLQLTELHPSDYPLLRSEFQKDSRARVEKADGFQQLKAKLPPVSRRGLILIDPPYEMKTDYQAVVSGIAEGYKRFATGIYALWYPVVLRQQIKRMIHDLEATGIRKILQIELAVLPDSDRRGMTASGMIVINPPWKLEQQMNNVLPWLHSKLVPAGTGHATVSWIVPE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12235-MONOMER" "DNA-binding transcriptional repressor ArsR" ["ArsE", "ArsR"] "MSFLLPIQLFKILADETRLGIVLLLSELGELCVCDLCTALDQSQPKISRHLALLRESGLLLDRKQGKWVHYRLSPHIPAWAAKIIDEAWRCEQEKVQAIVRNLARQNCSGDSKNICS" [] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -1487,8 +1487,8 @@ "EG12244-MONOMER" "cytochrome c peroxidase" ["YhjA", "tri-heme CCP"] "MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAVSENNKVLGFLREKGCDYCHTPSAELPAYYYIPGAKQLMDYDIKLGYKSFNLEAVRAALLADKPVSQSDLNKIEWVMQYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYASNDTAPEHRNEPVQPIPQKLPTDAQKVALGFALYHDPRLSADSTISCAHCHALNAGGVDGRKTSIGVGGAVGPINAPTVFNSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSWDEIIAKLEKDPQLKTQFLEVYPQGFSGENITDAIAEFEKTLITPDSPFDKWLRGDENALTAQQKKGYQLFKDNKCATCHGGIILGGRSFEPLGLKKDFNFGEITAADIGRMNVTKEERDKLRQKVPGLRNVALTAPYFHRGDVPTLDGAVKLMLRYQVGKELPQEDVDDIVAFLHSLNGVYTPYMQDKQ" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {"CA+2": 1, "PROTOHEME": 1} 0 "EG12246-MONOMER" "putative DNA-binding transcriptional regulator YhjB" ["YhjB"] "MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEFCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMMLNISS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12247-MONOMER" "putative DNA-binding transcriptional regulator YhjC" ["RcdB", "YhjC"] "MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELSSHDRPVDILHDGFDCVIRTGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEYLD" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12248-MONOMER" "putative transporter YhjD" ["YhjD"] "MTQENEIKRPIQDLEHEPIKPLDNSEKGSKVSQALETVTTTAEKVQRQPVIAHLIRATERFNDRLGNQFGAAITYFSFLSMIPILMVSFAAGGFVLASHPMLLQDIFDKILQNISDPTLAATLKNTINTAVQQRTTVGLVGLAVALYSGINWMGNLREAIRAQSRDVWERSPQDQEKFWVKYLRDFISLIGLLIALIVTLSITSVAGSAQQMIISALHLNSIEWLKPTWRLIGLAISIFANYLLFFWIFWRLPRHRPRKKALIRGTFLAAIGFEVIKIVMTYTLPSLMKSPSGAAFGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDPRMPGKTQP" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG12251-MONOMER" "AsmA family protein YhjG" ["YhjF", "YhjG"] "MSKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSAELNRPFAIRGDLGVVWERQKQETGWRSWVPWPHVHAEDIILGNPPDIPEVTMVHLPRVEATLAPLALLTKTVWLPWIKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAKPSAWSFRLDNILFDQGRIAIDDKVSKADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYVFGLKAQGRYNGEPLTGTGKIGGMLALRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGGVDLRLKFSGDSLGDLYELTGVLLPDTPPFETDGRLVAKIDTEKSSVFDYRGFNGRIGDSDIHGSLVYTTGKPRPKLEGDVESRQLRLADLGPLIGVDSGKGAEKSKRSEQKKGEKSVQPAGKVLPYDRFETDKWDVMDADVRFKGRRIEHGSSLPISDLSTHIILKNADLRLQPLKFGMAGGSIAANIHLEGDKKPMQGRADIQARRLKLKELMPDVELMQKTLGEMNGDAELRGSGNSVAALLGNSNGNLKLLMNDGLVSRNLMEIVGLNVGNYIVGAIFGDDEVRVNCAAANLNIANGVARPQIFAFDTENALINVTGTASFASEQLDLTIDPESKGIRIITLRSPLYVRGTFKNPQAGVKAGPLIARGAVAAALATLVTPAAALLALISPSEGEANQCRTILSQMKK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12248-MONOMER" "putative transporter YhjD" ["YhjD"] "MTQENEIKRPIQDLEHEPIKPLDNSEKGSKVSQALETVTTTAEKVQRQPVIAHLIRATERFNDRLGNQFGAAITYFSFLSMIPILMVSFAAGGFVLASHPMLLQDIFDKILQNISDPTLAATLKNTINTAVQQRTTVGLVGLAVALYSGINWMGNLREAIRAQSRDVWERSPQDQEKFWVKYLRDFISLIGLLIALIVTLSITSVAGSAQQMIISALHLNSIEWLKPTWRLIGLAISIFANYLLFFWIFWRLPRHRPRKKALIRGTFLAAIGFEVIKIVMTYTLPSLMKSPSGAAFGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDPRMPGKTQP" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12251-MONOMER" "AsmA family protein YhjG" ["YhjF", "YhjG"] "MSKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSAELNRPFAIRGDLGVVWERQKQETGWRSWVPWPHVHAEDIILGNPPDIPEVTMVHLPRVEATLAPLALLTKTVWLPWIKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAKPSAWSFRLDNILFDQGRIAIDDKVSKADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYVFGLKAQGRYNGEPLTGTGKIGGMLALRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGGVDLRLKFSGDSLGDLYELTGVLLPDTPPFETDGRLVAKIDTEKSSVFDYRGFNGRIGDSDIHGSLVYTTGKPRPKLEGDVESRQLRLADLGPLIGVDSGKGAEKSKRSEQKKGEKSVQPAGKVLPYDRFETDKWDVMDADVRFKGRRIEHGSSLPISDLSTHIILKNADLRLQPLKFGMAGGSIAANIHLEGDKKPMQGRADIQARRLKLKELMPDVELMQKTLGEMNGDAELRGSGNSVAALLGNSNGNLKLLMNDGLVSRNLMEIVGLNVGNYIVGAIFGDDEVRVNCAAANLNIANGVARPQIFAFDTENALINVTGTASFASEQLDLTIDPESKGIRIITLRSPLYVRGTFKNPQAGVKAGPLIARGAVAAALATLVTPAAALLALISPSEGEANQCRTILSQMKK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12252-MONOMER" "cyclic di-GMP phosphodiesterase PdeH" ["PdeH", "YhjH"] "MIRQVIQRISNPEASIESLQERRFWLQCERAYTWQPIYQTCGRLMAVELLTVVTHPLNPSQRLPPDRYFTEITVSHRMEVVKEQIDLLAQKADFFIEHGLLASVNIDGPTLIALRQQPKILRQIERLPWLRFELVEHIRLPKDSTFASMCEFGPLWLDDFGTGMANFSALSEVRYDYIKIARELFVMLRQSPEGRTLFSQLLHLMNRYCRGVIVEGVETPEEWRDVQNSPAFAAQGWFLSRPAPIETLNTAVLAL" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "EG12254-MONOMER" "peptidase M16 family protein YhjJ" ["YhjJ"] "MQGTKIRLLAGGLLMMATAGYVQADALQPDPAWQQGTLSNGLQWQVLTTPQRPSDRVEIRLLVNTGSLAESTQQSGYSHAIPRIALTQSGGLDAAQARSLWQQGIDPKRPMPPVIVSYDTTLFNLSLPNNRNDLLKEALSYLANATGKLTITPETINHALQSQDMVATWPADTKEGWWRYRLKGSTLLGHDPADPLKQPVEAEKIKDFYQKWYTPDAMTLLVVGNVDARSVVDQINKTFGELKGKRETPAPVPTLSPLRAEAVSIMTDAVRQDRLSIMWDTPWQPIRESAALLRYWRADLAREALFWHVQQALSASNSKDIGLGFDCRVLYLRAQCAINIESPNDKLNSNLNLVARELAKVRDKGLPEEEFNALVAQKKLELQKLFAAYARADTDILMGQRMRSLQNQVVDIAPEQYQKLRQDFLNSLTVEMLNQDLRQQLSNDMALILLQPKGEPEFNMKALQAVWDQIMAPSTAAATTSVATDDVHPEVTDIPPAQ" [] ["CCO-PERI-BAC"] 0 [] {} 0 "EG12256-MONOMER" "c-di-GMP phosphodiesterase PdeK" ["PdeK", "YhjK"] "MRVSRSLTIKQMAMVAAVVLVFVFIFCTVLLFHLVQQNRYNTATQLESIARSVREPLSSAILKGDIPEAEAILASIKPAGVVSRADVVLPNQFQALRKSFIPERPVPVMVTRLFELPVQISLGVYSLERPANPQPIAYLVLQADSFRMYKFVMSTLSTLVTIYLLLSLILTVAISWCINRLILHPLRNIARELNAIPAKELVGHQLALPRLHQDDEIGMLVRSYNLNQQLLQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTTALMIITCETLRDTAGVLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIMSERLPIERIQLRPHCSIGVAMFYGDLTAEQLYSRAISAAFTARHKGKNQIQFFDPQQMEAAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLIDRIECCGLMVTVGHWVLEESCRLLAAWQERGIMLPLSVNLSALQLMHPNMVADMLELLTRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVEGLPGDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQGFLFARPLPIEIFEESYLEEK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 @@ -1499,14 +1499,14 @@ "EG12261-MONOMER" "cellulose biosynthesis protein" [] "MAVLG*QGVRGGVGTTTITAALAWSLQMLGENVLVVDACPDNLLRLSFNVDFTHRQGWARAMLDGQDWRDAGLRYTSQLDLLPFGQLSIEEQENPQHWQTRLSDICSGLQQLKASGRYQWILIDLPRDASQITHQLLSLCDHSLAIVNVDANCHIRLHQQALPDGAHILINDFRIGSQVQDDIYQLWLQSQRRLLPMLIHRDEAMAECLAAKQPVGEYRSDALAAEEILTLANWCLLNYSGLKTPVGSAS" [] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12262-MONOMER" "PF10945 family protein YhjR" ["BcsR", "YhjR"] "MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQQK" [] [] 0 [] {} 0 "EG12263-MONOMER" "c-di-GMP-binding protein BcsE" ["BcsE", "YhjS"] "MRDIVDPVFSIGISSLWDELRHMPAGGVWWFNVDRHEDAISLANQTIASQAETAHVAVISMDSDPAKIFQLDDSQGPEKIKLFSMLNHEKGLYYLTRDLQCSIDPHNYLFILVCANNAWQNIPAERLRSWLDKMNKWSRLNHCSLLVINPGNNNDKQFSLLLEEYRSLFGLASLRFQGDQHLLDIAFWCNEKGVSARQQLSVQQQNGIWTLVQSEEAEIQPRSDEKRILSNVAVLEGAPPLSEHWQLFNNNEVLFNEARTAQAATVVFSLQQNAQIEPLARSIHTLRRQRGSAMKILVRENTASLRATDERLLLACGANMVIPWNAPLSRCLTMIESVQGQKFSRYVPEDITTLLSMTQPLKLRGFQKWDVFCNAVNNMMNNPLLPAHGKGVLVALRPVPGIRVEQALTLCRPNRTGDIMTIGGNRLVLFLSFCRINDLDTALNHIFPLPTGDIFSNRMVWFEDDQISAELVQMRLLAPEQWGMPLPLTQSSKPVINAEHDGRHWRRIPEPMRLLDDAVERSS" [] [] 0 [] {} 0 -"EG12264-MONOMER" "putative cellulose biosynthesis protein BcsF" ["BcsF", "YhjT"] "MMTISDIIEIIVVCALIFFPLGYLARHSLRRIRDTLRLFFAKPRYVKPAGTLRRTEKARATKK" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG12265-MONOMER" "cellulose phosphoethanolamine transferase" ["BcsG", "YhjU"] "MTQFTQNTAMPSSLWQYWRGLSGWNFYFLVKFGLLWAGYLNFHPLLNLVFAAFLLMPLPRYSLHRLRHWIALPIGFALFWHDTWLPGPESIMSQGSQVAGFSTDYLIDLVTRFINWQMIGAIFVLLVAWLFLSQWIRITVFVVAILLWLNVLTLAGPSFSLWPAGQPTTTVTTTGGNAAATVAATGGAPVVGDMPAQTAPPTTANLNAWLNNFYNAEAKRKSTFPSSLPADAQPFELLVINICSLSWSDIEAAGLMSHPLWSHFDIEFKNFNSATSYSGPAAIRLLRASCGQTSHTNLYQPANNDCYLFDNLSKLGFTQHLMMGHNGQFGGFLKEVRENGGMQSELMDQTNLPVILLGFDGSPVYDDTAVLNRWLDVTEKDKNSRSATFYNTLPLHDGNHYPGVSKTADYKARAQKFFDELDAFFTELEKSGRKVMVVVVPEHGGALKGDRMQVSGLRDIPSPSITDVPVGVKFFGMKAPHQGAPIVIEQPSSFLAISDLVVRVLDGKIFTEDNVDWKKLTSGLPQTAPVSENSNAVVIQYQDKPYVRLNGGDWVPYPQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12264-MONOMER" "putative cellulose biosynthesis protein BcsF" ["BcsF", "YhjT"] "MMTISDIIEIIVVCALIFFPLGYLARHSLRRIRDTLRLFFAKPRYVKPAGTLRRTEKARATKK" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12265-MONOMER" "cellulose phosphoethanolamine transferase" ["BcsG", "YhjU"] "MTQFTQNTAMPSSLWQYWRGLSGWNFYFLVKFGLLWAGYLNFHPLLNLVFAAFLLMPLPRYSLHRLRHWIALPIGFALFWHDTWLPGPESIMSQGSQVAGFSTDYLIDLVTRFINWQMIGAIFVLLVAWLFLSQWIRITVFVVAILLWLNVLTLAGPSFSLWPAGQPTTTVTTTGGNAAATVAATGGAPVVGDMPAQTAPPTTANLNAWLNNFYNAEAKRKSTFPSSLPADAQPFELLVINICSLSWSDIEAAGLMSHPLWSHFDIEFKNFNSATSYSGPAAIRLLRASCGQTSHTNLYQPANNDCYLFDNLSKLGFTQHLMMGHNGQFGGFLKEVRENGGMQSELMDQTNLPVILLGFDGSPVYDDTAVLNRWLDVTEKDKNSRSATFYNTLPLHDGNHYPGVSKTADYKARAQKFFDELDAFFTELEKSGRKVMVVVVPEHGGALKGDRMQVSGLRDIPSPSITDVPVGVKFFGMKAPHQGAPIVIEQPSSFLAISDLVVRVLDGKIFTEDNVDWKKLTSGLPQTAPVSENSNAVVIQYQDKPYVRLNGGDWVPYPQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12267-MONOMER" "phosphoethanolamine transferase EptB" ["YhjW", "EptB", "Kdo2-lipid A phosphoethanolamine 7''-transferase"] "MRYIKSITQQKLSFLLAIYIGLFMNGAVFYRRFGSYAHDFTVWKGISAVVELAATVLVTFFLLRLLSLFGRRSWRILASLVVLFSAGASYYMTFLNVVIGYGIIASVMTTDIDLSKEVVGLNFILWLIAVSALPLILIWNNRCRYTLLRQLRTPGQRIRSLAVVVLAGIMVWAPIRLLDIQQKKVERATGVDLPSYGGVVANSYLPSNWLSALGLYAWARVDESSDNNSLLNPAKKFTYQAPQNVDDTYVVFIIGETTRWDHMGIFGYERNTTPKLAQEKNLAAFRGYSCDTATKLSLRCMFVRQGGAEDNPQRTLKEQNIFAVLKQLGFSSDLYAMQSEMWFYSNTMADNIAYREQIGAEPRNRGKPVDDMLLVDEMQQSLGRNPDGKHLIILHTKGSHFNYTQRYPRSFAQWKPECIGVDSGCTKAQMINSYDNSVTYVDHFISSVIDQVRDKKAIVFYAADHGESINEREHLHGTPRELAPPEQFRVPMMVWMSDKYLENPANAQAFAQLKKEADMKVPRRHVELYDTIMGCLGYTSPDGGINENNNWCHIPQAKEAAAN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12269-MONOMER" "putative outer membrane protein YhjY" ["YhjY"] "MIIKKSGGRWQLSLLASVVISAFFLNTAYAWQQEYIVDTQPGLSTERYTWDSDHQPDYNDILSQRIQSSQRALGLEVNLAEETPVDVTSSMSMGWNFPLYEQVTTGPVAALHYDGTTTSMYNEFGDSTTTLTDPLWHASVSTLGWRVDSRLGDLRPWAQISYNQQFGENIWKAQSGLSRMTATNQNGNWLDVTVGADMLLNQNIAAYAALTQAENTTNNSDYLYTMGVSARF" [] ["CCO-MEMBRANE", "CCO-EXTRACELLULAR"] 0 [] {} 0 "EG12270-MONOMER" "peptidyl-lysine N-acetyltransferase YiaC" ["YiaC", "Nε-lysine acetyltransferase YiaC"] "MIREAQRSELPAILELWLESTTWGHPFIKANYWRDCIPLVRDAYLANAQNWVWEEDGKLLGFVSIMEGRFLAAMFVAPKAVRRGIGKALMQYVQQRHPHLMLEVYQKNQPAINFYQAQGFHIVDCAWQDETQLPTWIMSWPVVQTL" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 -"EG12271-MONOMER" "PF13488 family lipoprotein YiaD" ["YiaD"] "MKKRVYLIAAVVSGALAVSGCTTNPYTGEREAGKSAIGAGLGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSPL" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"EG12271-MONOMER" "PF13488 family lipoprotein YiaD" ["YiaD"] "MKKRVYLIAAVVSGALAVSGCTTNPYTGEREAGKSAIGAGLGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSPL" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] 0 [] {} 0 "EG12273-MONOMER" "DUF3053 domain-containing protein YiaF" ["YiaF"] "MATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNTVMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQDYVTQSGPLREMNGSLGVLAQQLQNAKLQADAAHSALKQSDDLKPVFDQAFTKVVTTPADALQPLIPAAQTFTQQLVMVGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLPAQHQAFNQAWTTAVTATQ" [] [] 0 [] {} 0 -"EG12274-MONOMER" "O-acetyltransferase WecH" ["YiaH", "WecH"] "MQPKIYWIDNLRGIACLMVVMIHTTTWYVTNAHSVSPVTWDIANVLNSASRVSVPLFFMISGYLFFGERSAQPRHFLRIGLCLIFYSAIALLYIALFTSINMELALKNLLQKPVFYHLWFFFAIAVIYLVSPLIQVKNVGGKMLLVLMAVIGIIANPNTVPQKIDGFEWLPINLYINGDTFYYILYGMLGRAIGMMDTQHKALSWVSAALFATGVFIISRGTLYELQWRGNFADTWYLYCGPMVFICAIALLTLVKNTLDTRTIRGLGLISRHSLGIYGFHALIIHALRTRGIELKNWPILDIIWIFCATLAASLLLSMLVQRIDRNRLVS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12274-MONOMER" "O-acetyltransferase WecH" ["YiaH", "WecH"] "MQPKIYWIDNLRGIACLMVVMIHTTTWYVTNAHSVSPVTWDIANVLNSASRVSVPLFFMISGYLFFGERSAQPRHFLRIGLCLIFYSAIALLYIALFTSINMELALKNLLQKPVFYHLWFFFAIAVIYLVSPLIQVKNVGGKMLLVLMAVIGIIANPNTVPQKIDGFEWLPINLYINGDTFYYILYGMLGRAIGMMDTQHKALSWVSAALFATGVFIISRGTLYELQWRGNFADTWYLYCGPMVFICAIALLTLVKNTLDTRTIRGLGLISRHSLGIYGFHALIIHALRTRGIELKNWPILDIIWIFCATLAASLLLSMLVQRIDRNRLVS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12277-MONOMER" "putative electron transport protein YsaA" ["YsaA", "YiaI", "putative hydrogenase, 4Fe-4S ferredoxin-type component"] "MNRFIIADATKCIGCRTCEVACAVSHHENQDCAALSPDEFISRIRVIKDHCWTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAMEVVSSRKKARAIKCDLCWHRETGPACVEACPTKALQCMDVEKVQRHRLRQQPV" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 4} 0 "EG12278-MONOMER" "DNA-binding transcriptional repressor PlaR" ["YiaJ", "PlaR"] "MGKEVMGKKENEMAQEKERPAGSQSLFRGLMLIEILSNYPNGCPLAHLSELAGLNKSTVHRLLQGLQSCGYVTTAPAAGSYRLTTKFIAVGQKALSSLNIIHIAAPHLEALNIATGETINFSSREDDHAILIYKLEPTTGMLRTRAYIGQHMPLYCSAMGKIYMAFGHPDYVKSYWESHQHEIQPLTRNTITELPAMFDELAHIRESGAAMDREENELGVSCIAVPVFDIHGRVPYAVSISLSTSRLKQVGEKNLLKPLRETAQAISNELGFTVRDDLGAIT" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12279-MONOMER" "2,3-diketo-L-gulonate reductase" ["YiaK"] "MKVTFEQLKAAFNRVLISRGVDSETADACAEMFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAADHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLIVAIPSTPITMVDMSMSMFSYGMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPMGYWKGSGMSIVLDMIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRIMDYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQAL" [] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -1516,10 +1516,10 @@ "EG12285-MONOMER" "3-keto-L-gulonate-6-phosphate decarboxylase SgbH" ["YiaQ", "SgbH"] "MSRPLLQLALDHSSLEAAQRDVTLLKDSVDIVEAGTILCLNEGLGAVKALREQCPDKIIVADWKVADAGETLAQQAFGAGANWMTIICAAPLATVEKGHAMAQRCGGEIQIELFGNWTLDDARDWHRIGVRQAIYHRGRDAQASGQQWGEADLARMKALSDIGLELSITGGITPADLPLFKDIRVKAFIAGRALAGAANPAQVAGDFHAQIDAIWGGARA" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "EG12286-MONOMER" "putative L-xylulose 5-phosphate 3-epimerase" ["YiaR", "SgbU"] "MRNHQLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLDWSAAQRTSLVAAMIETGVGIPSMCLSAHRRFPFGSRDEAVRERAREIMSKAIRLARDLGIRTIQLAGYDVYYEDHDEGTRQRFAEGLAWAVEQAAASQVMLAVEIMDTAFMNSISKWKKWDEMLASPWFTVYPDVGNLSAWGNDVPAELKLGIDRIAAIHLKDTQPVTGQSPGQFRDVPFGEGCVDFVGIFKTLHKLNYRGSFLIEMWTEKAKEPVLEIIQARRWIEARMQEAGFIC" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12287-MONOMER" "L-ribulose-5-phosphate 4-epimerase SgbE" ["YiaS", "SgbE"] "MLEQLKADVLAANLALPAHHLVTFTWGNVSAVDETRQWMVIKPSGVEYDVMTADDMVVVEIASGKVVEGSKKPSSDTPTHLALYRRYAEIGGIVHTHSRHATIWSQAGLDLPAWGTTHADYFYGAIPCTRQMTAEEINGEYEYQTGEVIIETFEERGRSPAQIPAVLVHSHGPFAWGKNAADAVHNAVVLEECAYMGLFSRQLAPQLPAMQNELLDKHYLRKHGANAYYGQ" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 -"EG12288-MONOMER" "outer membrane protein YiaT" ["YiaT"] "MLINRNIVALFALPFMASATASELSIGAGAAYNESPYRGYNENTKAIPLISYEGDTFYVRQTTLGFILSQSEKNELSLTASWMPLEFDPTDNDDYAMQQLDKRDSTAMAGVAWYHHERWGTVKASAAADVLDNSNGWVGELSVFHKMQIGRLSLTPALGVLYYDENFSDYYYGISESESRRSGLASYSAQDAWVPYVSLTAKYPIGEHVVLMASAGYSELPEEITDSPMIDRNESFTFVTGVSWRF" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"EG12288-MONOMER" "outer membrane protein YiaT" ["YiaT"] "MLINRNIVALFALPFMASATASELSIGAGAAYNESPYRGYNENTKAIPLISYEGDTFYVRQTTLGFILSQSEKNELSLTASWMPLEFDPTDNDDYAMQQLDKRDSTAMAGVAWYHHERWGTVKASAAADVLDNSNGWVGELSVFHKMQIGRLSLTPALGVLYYDENFSDYYYGISESESRRSGLASYSAQDAWVPYVSLTAKYPIGEHVVLMASAGYSELPEEITDSPMIDRNESFTFVTGVSWRF" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 0 "EG12289-MONOMER" "DNA-binding transcriptional activator YiaU" ["YiaU", "LpsR", "CsuR"] "MTKLQLKYRELKIISVIAASENISHAATVLGIAQANVSKYLADFESKVGLKVFDRTTRQLMLTPFGTALLPYINDMLDRNEQLNNFIADYKHEKRGRVTIYAPTGIITYLSKHVIDKIKDIGDITLSLKTCNLERNAFYEGVEFPDDCDVLISYAPPKDESLVASFITQYAVTAYASQRYLEKHPISRPDELEHHSCILIDSMMIDDANIWRFNVAGSKEVRDYRVKGNYVCDNTQSALELARNHLGIVFAPDKSVQSDLQDGTLVPCFQQPYEWWLDLVAIFRKREYQPWRVQYVLDEMLREIRHQLAQSQQLRPEQAAESED" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12290-MONOMER" "putative membrane fusion protein YiaV" ["YiaV"] "MDLLIILTYVAFAWAMFKIFKIPVNKWTIPTAALGGIFIVSGLILLMNYNHPYTFKAQKAVISIPVVPQVTGVVIEVTDKKNTLIKKGEVLFRLDPTRYQARVDRLMADIVTAEHKQRALGAELDEMAANTQQAKATRDKFAKEYQRYARGSQAKVNPFSERDIDVARQNYLAQEASVKSSAAEQKQIQSQLDSLVLGEHSQIASLKAQLAEAKYNLEQTIVRAPSDGYVTQVLIRPGTYAASLPLRPVMVFIPDQKRQIVAQFRQNSLLRLAPGDDAEVVFNALPGKVFSGKLAAISPAVPGGAYQSTGTLQTLNTAPGSDGVIATIELDEHTDLSALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWVHYLYLDH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG12291-MONOMER" "DUF3302 domain-containing protein YiaW" ["YiaW"] "MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFLWIWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSSAE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12290-MONOMER" "putative membrane fusion protein YiaV" ["YiaV"] "MDLLIILTYVAFAWAMFKIFKIPVNKWTIPTAALGGIFIVSGLILLMNYNHPYTFKAQKAVISIPVVPQVTGVVIEVTDKKNTLIKKGEVLFRLDPTRYQARVDRLMADIVTAEHKQRALGAELDEMAANTQQAKATRDKFAKEYQRYARGSQAKVNPFSERDIDVARQNYLAQEASVKSSAAEQKQIQSQLDSLVLGEHSQIASLKAQLAEAKYNLEQTIVRAPSDGYVTQVLIRPGTYAASLPLRPVMVFIPDQKRQIVAQFRQNSLLRLAPGDDAEVVFNALPGKVFSGKLAAISPAVPGGAYQSTGTLQTLNTAPGSDGVIATIELDEHTDLSALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWVHYLYLDH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12291-MONOMER" "DUF3302 domain-containing protein YiaW" ["YiaW"] "MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFLWIWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSSAE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12293-MONOMER" "L-threonine dehydrogenase" ["YiaY"] "MAASTFFIPSVNVIGADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCIITDEARHIKMAIVDKHVTPLLSVNDSSLMIGMPKSLTAATGMDALTHAIEAYVSIAATPITDACALKAVTMIAENLPLAVEDGSNAKAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGGFYNLPHGVCNAVLLPHVQVFNSKVAAARLRDCAAAMGVNVTGKNDAEGAEACINAIRELAKKVDIPAGLRDLNVKEEDFAVLATNALKDACGFTNPIQATHEEIVAIYRAAM" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12295-MONOMER" "putative sulfurtransferase YibN" ["YibN", "putative rhodanese-related sulfurtransferase"] "MQEIMQFVGRHPILSIAWIALLVAVLVTTFKSLTSKVKVITRGEATRLINKEDAVVVDLRQRDDFRKGHIAGSINLLPSEIKANNVGELEKHKDKPVIVVDGSGMQCQEPANALTKAGFAQVFVLKEGVAGWAGENLPLVRGK" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "EG12297-MONOMER" "murein hydrolase activator EnvC" ["EnvC", "YibP", "divisome associated factor, activator of peptidoglycan hydrolases"] "MTRAVKPRRFAIRPIIYASVLSAGVLLCAFSAHADERDQLKSIQADIAAKERAVRQKQQQRASLLAQLKKQEEAISEATRKLRETQNTLNQLNKQIDEMNASIAKLEQQKAAQERSLAAQLDAAFRQGEHTGIQLILSGEESQRGQRLQAYFGYLNQARQETIAQLKQTREEVAMQRAELEEKQSEQQTLLYEQRAQQAKLTQALNERKKTLAGLESSIQQGQQQLSELRANESRLRNSIARAEAAAKARAEREAREAQAVRDRQKEATRKGTTYKPTESEKSLMSRTGGLGAPRGQAFWPVRGPTLHRYGEQLQGELRWKGMVIGASEGTEVKAIADGRVILADWLQGYGLVVVVEHGKGDMSLYGYNQSALVSVGSQVRAGQPIALVGSSGGQGRPSLYFEIRRQGQAVNPQPWLGR" ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 @@ -1528,7 +1528,7 @@ "EG12308-MONOMER" "putative DNA-binding transcriptional regulator YfhH" ["YfhH"] "MNGLLRIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGYKGFPALKLALSEALASQPESPSVPIHNQIRGDDPLRLVGEKLIKENTAAMYATLNVNSEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGFNAAAVRDMHALLATVQASSPDDLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPNALQQRASHCLYTIAEEQATNSASISACHAQGMLTDLLFIALIQQDLELAPERIRHSEALVKKLV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12309-MONOMER" "putative tRNA/rRNA methyltransferase YjtD" ["LasT", "YjtD"] "MRITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGDIIDNIKVFPTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDATADQHQLQALRERAMTLLTTLAVADDIKLVDWLQQRLGLLEQRDTAMLHRLLHDIEKNITK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG12310-MONOMER" "aminopeptidase B" ["YfhI", "PepB"] "MTEAMKITLSTQPADARWGEKATYSINNDGITLHLNGADDLGLIQRAARKIDGLGIKHVQLSGEGWDADRCWAFWQGYKAPKGTRKVVWPDLDDAQRQELDNRLMIIDWVRDTINAPAEELGPSQLAQRAVDLISNVAGDRVTYRITKGEDLREQGYMGLHTVGRGSERSPVLLALDYNPTGDKEAPVYACLVGKGITFDSGGYSIKQTAFMDSMKSDMGGAATVTGALAFAITRGLNKRVKLFLCCADNLISGNAFKLGDIITYRNGKKVEVMNTDAEGRLVLADGLIDASAQKPEMIIDAATLTGAAKTALGNDYHALFSFDDALAGRLLASAAQENEPFWRLPLAEFHRSQLPSNFAELNNTGSAAYPAGASTAAGFLSHFVENYQQGWLHIDCSATYRKAPVEQWSAGATGLGVRTIANLLTA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MN+2": 2} 1 -"EG12311-MONOMER" "accessory iron-sulfur cluster assembly protein IscX" ["IscX", "YfhJ", "regulator of iron-sulfur cluster assembly"] "MGLKWTDSREIGEALYDAYPDLDPKTVRFTDMHQWICDLEDFDDDPQASNEKILEAILLVWLDEAE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 +"EG12311-MONOMER" "accessory [Fe-S] cluster assembly protein IscX" ["IscX", "YfhJ", "regulator of iron-sulfur cluster assembly", "accessory iron-sulfur cluster assembly protein IscX"] "MGLKWTDSREIGEALYDAYPDLDPKTVRFTDMHQWICDLEDFDDDPQASNEKILEAILLVWLDEAE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12312-MONOMER" null ["YacE", "CoaE"] "MRYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPDAIASDVARLHAHYLQLASQFVSQEKP" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12313-MONOMER" "cell division factor ZapD" ["ZapD", "YacF"] "MQTQVLFEHPLNEKMRTWLRIEFLIQQLTVNLPIVDHAGALHFFRNVSELLDVFERGEVRTELLKELDRQQRKLQTWIGVPGVDQSRIEALIQQLKAAGSVLISAPRIGQFLREDRLIALVRQRLSIPGGCCSFDLPTLHIWLHLPQAQRDSQVETWIASLNPLTQALTMVLDLIRQSAPFRKQTSLNGFYQDNGGDADLLRLNLSLDSQLYPQISGHKSRFAIRFMPLDTENGQVPERLDFELACC" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG12314-MONOMER" "DNA gyrase inhibitor YacG" ["YacG"] "MSETITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPSSGDLSESDDWSEEPKQ" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 @@ -1543,22 +1543,22 @@ "EG12329-MONOMER" "RNA-dependent NTPase HrpB" ["YadO", "HrpB", "putative ATP-dependent RNA helicase HrpB"] "MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12330-MONOMER" "RNA 2',3'-cyclic phosphodiesterase" ["ThpR", "YadP", "LigT"] "MSEPQRLFFAIDLPAEIREQIIHWRATHFPPEAGRPVAADNLHLTLAFLGEVSAEKEKALSLLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFQSNRPFHPHITLLRDASEAVTIPPPGFNWSYAVTEFTLYASSFARGRTRYTPLKRWALTQ" [] ["CCO-CYTOSOL"] 1 [] {} 0 "EG12332-MONOMER" "iron-sulfur cluster insertion protein ErpA" ["YadR", "ErpA", "essential respiratory protein A"] "MSDDVALPLEFTDAAANKVKSLIADEDNPNLKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSFSI" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 1 -"EG12333-MONOMER" "PF03458 family protein YadS" ["YadS", "conserved inner membrane protein YadS"] "MLVYWLDIVGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGGTIRDMALDHGPVFWVKDPTDLVVAMVTSMLTIVLVRQPRRLPKWMLPVLDAVGLAVFVGIGVNKAFNAEAGPLIAVCMGVITGVGGGIIRDVLAREIPMILRTEIYATACIIGGIVHATAYYTFSVPLETASMMGMVVTLLIRLAAIRWHLKLPTFALDENGR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12333-MONOMER" "PF03458 family protein YadS" ["YadS", "conserved inner membrane protein YadS"] "MLVYWLDIVGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGGTIRDMALDHGPVFWVKDPTDLVVAMVTSMLTIVLVRQPRRLPKWMLPVLDAVGLAVFVGIGVNKAFNAEAGPLIAVCMGVITGVGGGIIRDVLAREIPMILRTEIYATACIIGGIVHATAYYTFSVPLETASMMGMVVTLLIRLAAIRWHLKLPTFALDENGR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12334-MONOMER" "vitamin B12 ABC transporter periplasmic binding protein" ["BtuF", "YadT"] "MAKSLFRALVALSFLAPLWLNAAPRVITLSPANTELAFAAGITPVGVSSYSDYPPQAQKIEQVSTWQGMNLERIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQPDKAEQAAQSLLDQYAQLKAQYADKPKKRVFLQFGINPPFTSGKESIQNQVLEVCGGENIFKDSRVPWPQVSREQVLARSPQAIVITGGPDQIPKIKQYWGEQLKIPVIPLTSDWFERASPRIILAAQQLCNALSQVD" ["CCO-MEMBRANE", "CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "EG12335-MONOMER" "DNA-binding transcriptional activator CdaR" ["SdaR", "CdaR", "YaeG"] "MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPENLRKYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALTEWAQRLGIDLNQPRVVAIVEVDSGQLGVDSAMAELQQLQNALTTPERNNLVAIVSLTEMVVLKPALNSFGRWDAEDHRKRVEQLITRMKEYGQLRFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQRMPESRCYFYQDLMLPVLLDSLRGDWQANELARPLARLKTMDNNGLLRRTLAAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLDEER" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12336-MONOMER" "DUF3461 domain-containing protein YaeH" ["YaeH"] "MYDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDKGEFFAKSVKFKYPRQRKTVVADGVGQGYKEVQEISPNLRYIIDELDQICQRDRSEVDLKRKILDDLRHLESVVTNKISEIEADLEKLTRK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12337-MONOMER" "phosphodiesterase YaeI" ["YaeI"] "MISRRRFLQATAATIATSSGFGYMHYCEPGWFELIRHRLAFFKDNAAPFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMSLNFSAFSDVLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSAGITVLFNQATVIATPNRQFELVGTGDLWAGQCKPPPASEANLPRLVLAHNPDSKEVMRDEPWDLMLCGHTHGGQLRVPLVGEPFAPVEDKRYVAGLNAFGERHIYTTRGVGSLYGLRLNCRPEVTMLELV" [] ["CCO-MEMBRANE"] 0 [] {"MG+2": 1} 0 "EG12338-MONOMER" "CP4-6 prophage; integrase core domain-containing protein YagA" ["YagA", "CP4-6 prophage; putative DNA-binding transcriptional regulator"] "MESLMPWDARDTMSLRTEFVLFASQDGANIRSLCRRFGISPATGYKWLQRWAQEGAAGLQDRPRIPHHSPNRSSDDITALLRMAHDRHERWGARKIKRWLEDQGHTMPAFSTVHNLMARHGLLPGASPGIPATGRFEHDAPNRLWQMDFKGHFPFGGGRCHPLTLLDDHSRFSLCLAHCTDERRETVQQQLVSVFERYGLPDRMTMDNGSPWGDTTGTWTALELWLMRLGIRVGHSRPYHPQTQGKLERFHRSLKAEVLQGKWFADSGELQRAFDHWRTVYNLERPHEALDMAVPGSRYQPSARQYSGNTTPPEYDEGVMVRKVDISGKLSVKGVSLSAGKAFRGERVGLKEMQEDGSYEVWWYSTKVGVIDLKKKSITMGKGC" ["CCO-CYTOSOL"] [] 0 [] {} 0 "EG12339-MONOMER" "CP4-6 prophage; orphan antitoxin YagB" ["CP4-6 prophage; putative cytoskeleton-binding protein YagB", "YagB"] "MNKDSTQTWGLKRDITPCFGARLVQEGHRLHFLADRAGFTGSFSEVQTLQLDEAFPHFVAHLELMLLSCELNPRYAHCVTLYRNGLTGEADTLGSHGYVYIAILNRHGFNRHLRVI" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12341-MONOMER" "anti-sigma-E factor RseA" ["YfiJ", "MclA", "RseA"] "MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"EG12341-MONOMER" "anti-sigma-E factor RseA" ["YfiJ", "MclA", "RseA"] "MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12342-MONOMER" "serine/threonine-protein kinase toxin HipH" ["HipH", "YjjJ", "putative DNA-binding transcriptional regulator", "putative kinase YjjJ", "toxin YjjJ"] "MSELTDLLLQGPRSAPELRQRLAISQATFSRLVAREDRVIRFGKARATRYALLRPYRGIERIPVWRVDDTGKAHKFADIRLCWPQGSCLVTGADGDEQWFDGLPWYLTDLRPQGFLGRAWGRKLAAQLNLTDDIRLWQEEDVLYALTVFNGEYTGGWLVGEGNYQRWITAQHPAEIPLDQKLTHYEQLASDALAGEIVGSSAGGEQPKFTYYAQTPSGNKHVLVKFTVPQQTAVSQRWGDLLIAESIAAQILRDGGIHAIESTVLVTSNRQVFLEAERFDCKGNDGRLPIVSLEAVQSEFISSPGSWPQAMRRLCEQQLVTHQSVAQTEVIWAFGRLIANSDMHAGNLSFYLSEPPFALTPVYDMLPMVYAPNSAGMLRDAAIEVKFDLNVSKSAWLTAIPLAQQFWQTVARDPRISEAFRHIAQEMPEKIRQIEEKVARMGG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12344-MONOMER" "DNA-binding transcriptional dual regulator PspF" ["YcjB", "PspF"] "MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG12345-MONOMER" "3-hydroxy acid dehydrogenase YdfG" ["YdfG"] "MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVSTLPAHVNINTLEMMPVTQSYAGLNVHRQ" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"EG12347-MONOMER" "cystine ABC transporter ATP binding subunit" ["TcyN", "YecC"] "MSAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRSINLLEQPEAGTITVGDITIDTARSLSQQKSLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGAAKALFADPEQPRTRQFLEKFLLQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"EG12347-MONOMER" "cystine ABC transporter ATP binding subunit" ["TcyN", "YecC"] "MSAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRSINLLEQPEAGTITVGDITIDTARSLSQQKSLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGAAKALFADPEQPRTRQFLEKFLLQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "EG12352-MONOMER" "peptidyl-prolyl cis-trans isomerase C" ["PpiC", "Par10", "parvulin", "rotamase C"] "MAKTAAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYRN" [] ["CCO-CYTOSOL"] 1 [] {} 0 "EG12354-MONOMER" "peptidyl-tRNA hydrolase, ribosome rescue factor" ["ArfB", "YaeJ"] "MIVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRGKVRSGRE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12356-MONOMER" "DNA-binding transcriptional activator RtcR" ["YhgB", "RtcR"] "MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12357-MONOMER" "medium-chain-fatty-acid—CoA ligase" ["FadK", "YdiD", "medium-chain acyl-CoA synthetase"] "MHPTGPHLGPDVLFRESNMKVTLTFNEQRRAAYRQQGLWGDASLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASCLANWMLAKGIESGDRIAFQLPGWCEFTVIYLACLKIGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADNTSLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFVYDLLNVLEKQPADLSALRFFLCGGTTIPKKVARECQQRGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDDARKTLPPGCEGEEASRGPNVFMGYFDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMSDERLGERSCAYVVLKAPHHSLSLEEVVAFFSRKRVAKYKYPEHIVVIEKLPRTTSGKIQKFLLRKDIMRRLTQDVCEEIE" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 0 +"EG12357-MONOMER" "medium-chain-fatty-acid—CoA ligase" ["FadK", "YdiD", "medium-chain acyl-CoA synthetase"] "MHPTGPHLGPDVLFRESNMKVTLTFNEQRRAAYRQQGLWGDASLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASCLANWMLAKGIESGDRIAFQLPGWCEFTVIYLACLKIGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADNTSLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFVYDLLNVLEKQPADLSALRFFLCGGTTIPKKVARECQQRGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDDARKTLPPGCEGEEASRGPNVFMGYFDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMSDERLGERSCAYVVLKAPHHSLSLEEVVAFFSRKRVAKYKYPEHIVVIEKLPRTTSGKIQKFLLRKDIMRRLTQDVCEEIE" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "EG12359-MONOMER" "putative fimbrial protein YbgD" ["YbgD"] "MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHPEDIDKNIDLGQVTTTHINREHHSNKVAVDIRLINCDLPASDNGSGMPVSKVGVTFDSTAKTTGATPLLSNTSAGEATGVGVRLMDKNDGNIVLGSAAPDLDLDASSSEQTLNFFAWMEQIDNAVDVTAGEVTANATYVLDYK" [] ["CCO-EXTRACELLULAR", "CCO-PILUS"] 0 [] {} 0 "EG12360-MONOMER" "ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE" ["YfaE", "2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance"] "MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"CPD-6": 1} 0 "EG12363-MONOMER" "putative fimbrial protein YgiL" ["YgiL"] "MSAFKKSLLVAGVAMILSNNVFADEGHGIVKFKGEVISAPCSIKPGDEDLTVNLGEVADTVLKSDQKSLAEPFTIHLQDCMLSQGGTTYSKAKVTFTTANTMTGQSDLLKNTKETEIGGATGVGVRILDSQSGEVTLGTPVVITFNNTNSYQELNFKARMESPSKDATPGNVYAQADYKIAYE" [] ["CCO-PILUS", "CCO-EXTRACELLULAR"] 0 [] {} 0 @@ -1566,7 +1566,7 @@ "EG12365-MONOMER" "putative phosphoribulokinase" ["YhfF", "PrkB"] "MSAKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNLHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFIEYGQSGKGKSRKYLHTYDEAVPWNQVPGTFTPWQPLPEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEWIQKLIRDTSERGHSREAVMDSVVRSMEDYINYITPQFSRTHLNFQRVPTVDTSNPFAAKGIPSLDESFVVIHFRNLEGIDFPWLLAMLQGSFISHINTLVVPGGKMGLAMELIMLPLVQRLMEGKKIE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12366-MONOMER" "16S rRNA m3U1498 methyltransferase" ["YggJ", "RsmE"] "MRIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSVEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINTLPLPVERVRLLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTALTAITALQVRFGDLG" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG12370-MONOMER" "e14 prophage; putative integrase" ["YcfI", "IntE"] "MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRYHDDRGKGWSKVAL" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12371-MONOMER" "lipoprotein NlpI" ["YhbM", "NlpI"] "MKPFLRWCFVATALTLAGCSNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ" [] ["CCO-OUTER-MEM", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 +"EG12371-MONOMER" "lipoprotein NlpI" ["YhbM", "NlpI"] "MKPFLRWCFVATALTLAGCSNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "EG12372-MONOMER" "flap endonuclease" ["YgdG", "ExoIX", "Xni", "Exo"] "MAVHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIMHSQPTHAVAVFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKKLETHKEMAFLCRDIARLQTDLHIDGNLQQLRLVR" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1, "K+": 1} 0 "EG12373-MONOMER" "nucleotide 5'-monophosphate nucleosidase" ["PpnN", "YgdH"] "MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFENFDINVLRRERGVKLELINPPEEAFVDGRIIRALQANLFAVLRDILFVYGQIHNTVRFPNLNLDNSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSINENEYLYARRVGNQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPANKDQVLPLILTGPKESADYFRVLDEFVVHTLGENARRHYRIIIDDAAEVARQMKKSMPLVKENRRDTGDAYSFNWSMRIAPDLQMPFEPSHENMANLKLYPDQPVEVLAADLRRAFSGIVAGNVKEVGIRAIEEFGPYKINGDKEIMRRMDDLLQGFVAQHRMKLPGSAYIPCYEICT" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EG12374-MONOMER" "DUF2559 domain-containing protein YhfG" ["FicA", "YhfG"] "MKKLTDKQKSRLWELQRNRNFQASRRLEGVEMPLVTLTAAEALARLEELRSHYER" [] [] 0 [] {} 1 @@ -1575,14 +1575,14 @@ "EG12378-MONOMER" "isochorismatase family protein YecD" ["YecD", "putative hydrolase"] "MLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRASGQPVFLVRVGWSADYAEALKQPVDAPSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILNAL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12379-MONOMER" "DUF72 domain-containing protein YecE" ["YecE"] "MIYIGLPQWSHPKWVRLGITSLEEYARHFNCVEGNTTLYALPKPEVVLRWREQTTDDFRFCFKFPATISHQAALRHCDDLVTEFLTRMSPLAPRIGQYWLQLPATFGPRELPALWHFLDSLPGEFNYGVEVRHPQFFAKGEEEQTLNRGLHQRGVNRVILDSRPVHAARPHSEAIRDAQRKKPKVPVHAVLTATNPLIRFIGSDDMTQNRELFQVWLQKLAQWHQTTTPYLFLHTPDIAQAPELVHTLWEDLRKTLPEIGAVPAIPQQSSLF" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12384-MONOMER" "putative carbamate kinase" ["ArcC", "YbcF"] "MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTDDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPNVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12385-MONOMER" "RcsD phosphotransferase" ["YojQ", "YojP", "RcsD", "YojN"] "MRQKETTATTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNAWLKDKSYQIVDITHAIQKRVDNWRYVTWQIYDNIAATTSPSSGEGLQETRLKQDVYYLEKPRRKTEALIFGSHDNSTLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLVLISTLPLKDLTSGFKESTVSDIVDSRRAEMLQQANALDERESFSNMRRLAWQNGHYFTLRTTFNQPGHLATVVAFDLPINDLIPPGMPLDSFRLEPDATATGNNDNEKEGTDSVSIHFNSTKIEISSALNSTDMRLVWQVPYGTLLLDTLQNILLPLLLNIGLLALALFGYTTFRHFSSRSTENVPSTAVNNELRILRAINEEIVSLLPLGLLVHDQESNRTVISNKIADHLLPHLNLQNITTMAEQHQGIIQATINNELYEIRMFRSQVAPRTQIFIIRDQDREVLVNKKLKQAQRLYEKNQQGRMIFMKNIGDALKEPAQSLAESAAKLNAPESKQLANQADVLVRLVDEIQLANMLADDSWKSETVLFSVQDLIDEVVPSVLPAIKRKGLQLLINNHLKAHDMRRGDRDALRRILLLLMQYAVTSTQLGKITLEVDQDESSEDRLTFRILDTGEGVSIHEMDNLHFPFINQTQNDRYGKADPLAFWLSDQLARKLGGHLNIKTRDGLGTRYSVHIKMLAADPEVEEEEERLLDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDERLISQDYDIFLTDNPSNLTASGLLLSDDESGVREIGPGQLCVNFNMSNAMQEAVLQLIEVQLAQEEVTESPLGGDENAQLHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISDIDSYVKSLL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12385-MONOMER" "RcsD phosphotransferase" ["YojQ", "YojP", "RcsD", "YojN"] "MRQKETTATTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNAWLKDKSYQIVDITHAIQKRVDNWRYVTWQIYDNIAATTSPSSGEGLQETRLKQDVYYLEKPRRKTEALIFGSHDNSTLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLVLISTLPLKDLTSGFKESTVSDIVDSRRAEMLQQANALDERESFSNMRRLAWQNGHYFTLRTTFNQPGHLATVVAFDLPINDLIPPGMPLDSFRLEPDATATGNNDNEKEGTDSVSIHFNSTKIEISSALNSTDMRLVWQVPYGTLLLDTLQNILLPLLLNIGLLALALFGYTTFRHFSSRSTENVPSTAVNNELRILRAINEEIVSLLPLGLLVHDQESNRTVISNKIADHLLPHLNLQNITTMAEQHQGIIQATINNELYEIRMFRSQVAPRTQIFIIRDQDREVLVNKKLKQAQRLYEKNQQGRMIFMKNIGDALKEPAQSLAESAAKLNAPESKQLANQADVLVRLVDEIQLANMLADDSWKSETVLFSVQDLIDEVVPSVLPAIKRKGLQLLINNHLKAHDMRRGDRDALRRILLLLMQYAVTSTQLGKITLEVDQDESSEDRLTFRILDTGEGVSIHEMDNLHFPFINQTQNDRYGKADPLAFWLSDQLARKLGGHLNIKTRDGLGTRYSVHIKMLAADPEVEEEEERLLDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDERLISQDYDIFLTDNPSNLTASGLLLSDDESGVREIGPGQLCVNFNMSNAMQEAVLQLIEVQLAQEEVTESPLGGDENAQLHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISDIDSYVKSLL" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12386-MONOMER" "DNA-binding transcriptional repressor GlaR" ["GlaR", "CsiR", "YgaE", "GabC"] "MTITSLDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLREALSQLVAERLVTVVNQKGYRVASMSEQELLDIFDARANMEAMLVSLAIARGGDEWEADVLAKAHLLSKLEACDASEKMLDEWDLRHQAFHTAIVAGCGSHYLLQMRERLFDLAARYRFIWLRRTVLSVEMLEDKHDQHQTLTAAVLARDTARASELMRQHLLTPIPIIQQAMAGN" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"EG12387-MONOMER" "L-2-hydroxyglutarate dehydrogenase" ["LhgD", "YgaF", "LhgO"] "MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTGHNSGVIHAGVYYTPGSLKAQFCLAGNRATKAFCDQNGIRYDNCGKMLVATSDLEMERMRALWERTAANGIEREWLNADELREREPNITGLGGIFVPSSGIVSYRDVTAAMAKIFQSRGGEIIYNAEVSGLNEHKNGVVIRTRQGGEYEASTLISCSGLMADRLVKMLGLEPGFIICPFRGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRTIHTCNAPSPAATSAIPIGAHIVSKVQTLLASQSNPGRTLRAARSVDALHAAFNQ" ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12387-MONOMER" "L-2-hydroxyglutarate dehydrogenase" ["LhgD", "YgaF", "LhgO"] "MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTGHNSGVIHAGVYYTPGSLKAQFCLAGNRATKAFCDQNGIRYDNCGKMLVATSDLEMERMRALWERTAANGIEREWLNADELREREPNITGLGGIFVPSSGIVSYRDVTAAMAKIFQSRGGEIIYNAEVSGLNEHKNGVVIRTRQGGEYEASTLISCSGLMADRLVKMLGLEPGFIICPFRGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRTIHTCNAPSPAATSAIPIGAHIVSKVQTLLASQSNPGRTLRAARSVDALHAAFNQ" ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12388-MONOMER" "putative fimbrial protein SfmF" ["YbcG", "SfmF"] "MRRVLFSCFCGLLWSSSGWAVDPLGTININLHGNVVDFSCTVNTADIDKTVDLGRWPTTQLLNAGDTTALVPFSLRLEGCPPGSVAILFTGTPASDTNLLALDDPAMAQTVAIELRNSDRSRLALGEASPTEEVDANGNVTLNFFANYRALASGVRPGVAKADAIFMINYN" [] ["CCO-EXTRACELLULAR", "CCO-PILUS"] 0 [] {} 0 "EG12391-MONOMER" "PF10636 family protein YdiE" ["YdiE"] "MRYTDSRKLTPETDANHKTASPQPIRRISSQTLLGPDGKLIIDHDGQEYLLRKTQAGKLLLTK" [] [] 0 [] {} 1 "EG12394-MONOMER" "methionine sulfoxide reductase B" ["YeaA", "MsrB"] "MANKPSAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASLRFTDGENGEEING" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"ZN+2": 1} 0 "EG12395-MONOMER" "PF09600 family protein YbgE" ["YbgE"] "MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIVGLIFFFF" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG12396-MONOMER" "putative diguanylate cyclase DgcE" ["DgcE", "YegE"] "MSKQSQHVLIALPHPLLHLVSLGLVSFIFTLFSLELSQFGTQLAPLWFPTSIMMVAFYRHAGRMWPGIALSCSLGNIAASILLFSTSSLNMTWTTINIVEAVVGAVLLRKLLPWYNPLQNLADWLRLALGSAIVPPLLGGVLVVLLTPGDDPLRAFLIWVLSESIGALALVPLGLLFKPHYLLRHRNPRLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETHFRNAMEYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLISGEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLMERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPHIKPNWQVWYECVLPEDRQHAEKVIRDSLQSRSPFKLEFRITVKDGIRHIRALANRVLNKEGEVERLLGINMDMTEVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLLTVLHITFGDNGPLMENIYSADTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIGSVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQLRILLQTVNSTHQRHALVFIDLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARFIATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGRVTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSCEGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKGISISLPLSVAGLSSATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESVQKLRLAGCRIVLSQVGRDLQIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMDTLSGIGVDLIYGEVIADAQPLDLLVNSSYFAIN" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 1 +"EG12396-MONOMER" "diguanylate cyclase DgcE" ["DgcE", "YegE"] "MSKQSQHVLIALPHPLLHLVSLGLVSFIFTLFSLELSQFGTQLAPLWFPTSIMMVAFYRHAGRMWPGIALSCSLGNIAASILLFSTSSLNMTWTTINIVEAVVGAVLLRKLLPWYNPLQNLADWLRLALGSAIVPPLLGGVLVVLLTPGDDPLRAFLIWVLSESIGALALVPLGLLFKPHYLLRHRNPRLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETHFRNAMEYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLISGEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLMERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPHIKPNWQVWYECVLPEDRQHAEKVIRDSLQSRSPFKLEFRITVKDGIRHIRALANRVLNKEGEVERLLGINMDMTEVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLLTVLHITFGDNGPLMENIYSADTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIGSVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQLRILLQTVNSTHQRHALVFIDLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARFIATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGRVTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSCEGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKGISISLPLSVAGLSSATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESVQKLRLAGCRIVLSQVGRDLQIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMDTLSGIGVDLIYGEVIADAQPLDLLVNSSYFAIN" [] ["CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 1 "EG12397-MONOMER" "putative fimbrial chaperone YcbF" ["YcbF"] "MTNTWNRLALLIFAVLSLLVAGELQAGVVVGGTRFIFPADRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQLRWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNVGVVPPKSQRQTSWCQAIAPCHVAWRAINDYGGLSAKKEQNLP" [] ["CCO-PERI-BAC"] 0 [] {} 0 "EG12399-MONOMER" "dihydroxyacetone kinase subunit M" ["DhaM", "DhaH", "YcgC", "PtsD"] "MVNLVIVSHSSRLGEGVGELARQMLMSDSCKIAIAAGIDDPQNPIGTDAVKVMEAIESVADADHVLVMMDMGSALLSAETALELLAPEIAAKVRLCAAPLVEGTLAATVSAASGADIDKVIFDAMHALEAKREQLGLPSSDTEISDTCPAYDEEARSLAVVIKNRNGLHVRPASRLVYTLSTFNADMLLEKNGKCVTPESINQIALLQVRYNDTLRLIAKGPEAEEALIAFRQLAEDNFGETEEVAPPTLRPVPPVSGKAFYYQPVLCTVQAKSTLTVEEEQDRLRQAIDFTLLDLMTLTAKAEASGLDDIAAIFSGHHTLLDDPELLAAASELLQHEHCTAEYAWQQVLKELSQQYQQLDDEYLQARYIDVDDLLHRTLVHLTQTKEELPQFNSPTILLAENIYPSTVLQLDPAVVKGICLSAGSPVSHSALIARELGIGWICQQGEKLYAIQPEETLTLDVKTQRFNRQG" ["CCO-CYTOSOL"] ["CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 1 "EG12401-MONOMER" "23S rRNA m2A2503 methyltransferase/tRNA m2A37 methyltransferase" ["YfgB", "RlmN", "ribosomal RNA large subunit methyltransferase N"] "MSEQLVTPENVTTKDGKINLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEAIDIKAV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 0 @@ -1614,7 +1614,7 @@ "EG12449-MONOMER" "ribosomal protein L3 N5-glutamine methyltransferase" ["PrmB", "YfcB", "ribosomal large subunit L3 protein glutamine methyltransferase", "protein-glutamine N-methyltransferase", "50S ribosomal subunit protein L3 N5-glutamine methyltransferase"] "MDKIFVDEAVNELQTIQDMLRWSVSRFSAANIWYGHGTDNPWDEAVQLVLPSLYLPLDIPEDMRTARLTSSEKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLVPRSPIGELINNKFAGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLKLTRRILGNAADYLADDGVLICEVGNSMVHLMEQYPDVPFTWLEFDNGGDGVFMLTKEQLIAAREHFAIYKD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12450-MONOMER" null ["YgaL", "NorW", "YgbD"] "MSNGIVIIGSGFAARQLVKNIRKQDATIPLTLIAADSMDEYNKPDLSHVISQGQRADDLTRQTAGEFAEQFNLHLFPQTWVTDIDAEARVVKSQNNQWQYDKLVLATGASAFVPPVPGRELMLTLNSQQEYRACETQLRDARRVLIVGGGLIGSELAMDFCRAGKAVTLIDNAASILASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIQATLDRQRNIEVDAVIAATGLRPETALARRAGLTINRGVCVDSYLQTSNTDIYALGDCAEINGQVLPFLQPIQLSAMVLAKNLLGNNTPLKLPAMLVKIKTPELPLHLAGETQRQDLRWQINTERQGMVARGVDDADQLRAFVVSEDRMKEAFGLLKTLPM" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12454-MONOMER" "Cys-tRNAPro/Cys-tRNACys deacylase YbaK" ["YbaK"] "MTPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAKKVEMADPMVAQRSTGYLVGGISPLGQKKRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIARRD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12455-MONOMER" "lysophospholipid transporter" ["YgeD", "LplT"] "MSESVHTNTSLWSKGMKAVIVAQFLSAFGDNALLFATLALLKAQFYPEWSQPILQMVFVGAYILFAPFVGQVADSFAKGRVMMFANGLKLLGAASICFGINPFLGYTLVGVGAAAYSPAKYGILGELTTGSKLVKANGLMEASTIAAILLGSVAGGVLADWHVLVALAACALAYGGAVVANIYIPKLAAARPGQSWNLINMTRSFLNACTSLWRNGETRFSLVGTSLFWGAGVTLRFLLVLWVPVALGITDNATPTYLNAMVAIGIVVGAGAAAKLVTLETVSRCMPAGILIGVVVLIFSLQHELLPAYALLMLIGVMGGFFVVPLNALLQERGKKSVGAGNAIAVQNLGENSAMLLMLGIYSLAVMIGIPVVPIGIGFGALFALAITALWIWQRRH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12455-MONOMER" "lysophospholipid transporter" ["YgeD", "LplT"] "MSESVHTNTSLWSKGMKAVIVAQFLSAFGDNALLFATLALLKAQFYPEWSQPILQMVFVGAYILFAPFVGQVADSFAKGRVMMFANGLKLLGAASICFGINPFLGYTLVGVGAAAYSPAKYGILGELTTGSKLVKANGLMEASTIAAILLGSVAGGVLADWHVLVALAACALAYGGAVVANIYIPKLAAARPGQSWNLINMTRSFLNACTSLWRNGETRFSLVGTSLFWGAGVTLRFLLVLWVPVALGITDNATPTYLNAMVAIGIVVGAGAAAKLVTLETVSRCMPAGILIGVVVLIFSLQHELLPAYALLMLIGVMGGFFVVPLNALLQERGKKSVGAGNAIAVQNLGENSAMLLMLGIYSLAVMIGIPVVPIGIGFGALFALAITALWIWQRRH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12600-MONOMER" "inosine/xanthosine triphosphatase" ["YjjX", "ITPase/XTPase"] "MHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQPFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENASQRGEARSATLPLPAVILEKVREGEALGPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVILALSPFHNAVY" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "EG12605-MONOMER" "PF06062 family protein YacL" ["YacL", "UPF0231 family protein YacL"] "MDYEFLRDITGVVKVRMSMGHEVVGHWFNEEVKENLALLDEVEQAAHALKGSERSWQRAGHEYTLWMDGEEVMVRANQLEFAGDEMEEGMNYYDEESLSLCGVEDFLQVVAAYRNFVQQK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12609-MONOMER" "23S rRNA pseudouridine746 and tRNA pseudouridine32 synthase" ["YabO", "RluA", "ribosomal large subunit pseudouridine synthase A", "23S rRNA and tRNA pseudouridine synthase"] "MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF" [] ["CCO-CYTOSOL"] 1 [] {} 0 @@ -1625,11 +1625,11 @@ "EG12634-MONOMER" "CRISPR-associated endonuclease/helicase Cas3" ["YgcB", "Cas3"] "MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "EG12656-MONOMER" "NADPH:quinone oxidoreductase MdaB" ["MdaB", "NADPH quinone reductase"] "MSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGMEPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "EG12657-MONOMER" "putative quinol monooxygenase YgiN" ["YgiN"] "MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMVDCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPHMKAYSEAVKGDVLEMNIRILQPGI" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"EG12658-MONOMER" "sensor histidine kinase QseC" ["QseC", "YgiY"] "MKFTQRLSLRVRLTLIFLILASVTWLLSSFVAWKQTTDNVDELFDTQLMLFAKRLSTLDLNEINAADRMAQTPNRLKHGHVDDDALTFAIFTHDGRMVLNDGDNGEDIPYSYQREGFADGQLVGEDDPWRFVWMTSPDGKYRIVVGQEWEYREDMALAIVAGQLIPWLVALPIMLIIMMVLLGRELAPLNKLALALRMRDPDSEKPLNATGVPSEVRPLVESLNQLFARTHAMMVRERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKIDVRLTLNAHSIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNADNFIVRDNGPGVTPEALARIGERFYRPPGQTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSW" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG12666-MONOMER" null ["YbbF", "LpxH"] "MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRKMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQTLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"MN+2": 2} 0 +"EG12658-MONOMER" "sensor histidine kinase QseC" ["QseC", "YgiY"] "MKFTQRLSLRVRLTLIFLILASVTWLLSSFVAWKQTTDNVDELFDTQLMLFAKRLSTLDLNEINAADRMAQTPNRLKHGHVDDDALTFAIFTHDGRMVLNDGDNGEDIPYSYQREGFADGQLVGEDDPWRFVWMTSPDGKYRIVVGQEWEYREDMALAIVAGQLIPWLVALPIMLIIMMVLLGRELAPLNKLALALRMRDPDSEKPLNATGVPSEVRPLVESLNQLFARTHAMMVRERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKIDVRLTLNAHSIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNADNFIVRDNGPGVTPEALARIGERFYRPPGQTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSW" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12666-MONOMER" null ["YbbF", "LpxH"] "MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRKMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQTLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"MN+2": 2} 0 "EG12689-MONOMER" "DUF1375 domain-containing lipoprotein YceK" ["YceK"] "MRLIVVSIMVTLLSGCGSIISRTIPGQGHGNQYYPGVQWDVRDSAWRYVTILDLPFSLVFDTLLLPIDIHHGPYE" [] [] 0 [] {} 0 "EG12690-MONOMER" "replication-associated recombination protein A" ["RarA", "YcaJ", "MgsA"] "MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"EG12691-MONOMER" "lipopolysaccharide assembly protein B" ["YciM", "LapB"] "MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLTYEQRLLAIQQLGRDYMAAGLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKAIDVAERLVKLGKDKQRVEIAHFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSIMMGRVFMAKGEYAKAVESLQRVISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAVEENTGADAELMLADIIEARDGSEAAQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRAKESLMVLRDMVGEKVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGL" ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"FE+2": 1} 0 +"EG12691-MONOMER" "lipopolysaccharide assembly protein B" ["YciM", "LapB"] "MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLTYEQRLLAIQQLGRDYMAAGLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKAIDVAERLVKLGKDKQRVEIAHFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSIMMGRVFMAKGEYAKAVESLQRVISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAVEENTGADAELMLADIIEARDGSEAAQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRAKESLMVLRDMVGEKVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGL" ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"FE+2": 1} 0 "EG12692-MONOMER" "hydroxycarboxylate dehydrogenase A" ["HcxA", "YbdH"] "MPHNPIRVVVGPANYFSHPGSFNHLHDFFTDEQLSRAVWIYGKRAIAAAQTKLPPAFGLPGAKHILFRGHCSESDVQQLAAESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAVPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIILNAPQQYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINNAQAIRDVLLNSSEQALSDQQNQQLTQSFCDVVDAIIAGGGMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLTGAYQRFHLPTTLAELEVDINNQAEIDKVIAHTLRPVESIHYLPVTLTPDTLRAAFKKVESFKA" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 "EG12693-MONOMER" "putative NUDIX hydrolase with low 3-phosphohydroxypyruvate phosphatase activity" ["YeaB", "NudL"] "MEYRSLTLDDFLSRFQLLRPQINRETLNHRQAAVLIPIVRRPQPGLLLTQRSIHLRKHAGQVAFPGGAVDDTDASAIAAALREAEEEVAIPPSAVEVIGVLPPVDSVTGYQVTPVVGIIPPDLPYRASEDEVSAVFEMPLAQALHLGRYHPLDIYRRGDSHRVWLSWYEQYFVWGMTAGIIRELALQIGVKP" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "EG12694-MONOMER" "DNA-binding transcriptional activator Dan" ["Dan", "TtdR", "YgiP"] "MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRLGKPDEGYQVM" [] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -1637,18 +1637,18 @@ "EG12703-MONOMER" "PF13993 family protein YccJ" ["YccJ"] "MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV" ["CCO-CYTOSOL"] [] 1 [] {} 0 "EG12704-MONOMER" "DUF1202 domain-containing protein YggM" ["YggM"] "MKKQWIVGTALLMLMTGNAWADGEPPTENILKDQFKKQYHGILKLDAITLKNLDAKGNQATWSAEGDVSSSDDLYTWVGQLADYELLEQTWTKDKPVKFSAMLTSKGTPASGWSVNFYSFQAAASDRGRVVDDIKTNNKYLIVNSEDFNYRFSQLESALNTQKNSIPALEKEVKALDKQMVAAQKAADAYWGKDANGKQMTREDAFKKIHQQRDEFNKQNDSEAFAVKYDKEVYQPAIAACHKQSEECYEVPIQQKRDFDINEQRRQTFLQSQKLSRKLQDDWVTLEKGQYPLTMKVSEINSKKVAILMKIDDINQANERWKKDTEQLRRNGVIK" [] ["CCO-PERI-BAC"] 0 [] {} 0 "EG12705-MONOMER" "DUF2884 domain-containing protein YggN" ["EcfF", "YggN"] "MMRKMLLAAALSVTAMTAHADYQCSVTPRDDVIVSPQTVQVKGENGNLVITPDGNVMYNGKQYSLNAAQREQAKDYQAELRSTLPWIDEGAKSRVEKARIALDKIIVQEMGESSKMRSRLTKLDAQLKEQMNRIIETRSDGLTFHYKAIDQVRAEGQQLVNQAMGGILQDSINEMGAKAVLKSGGNPLQNVLGSLGGLQSSIQTEWKKQEKDFQQFGKDVCSRVVTLEDSRKALVGNLK" [] [] 0 [] {} 0 -"EG12707-MONOMER" "DUF3561 domain-containing inner membrane protein YgbE" ["YgbE"] "MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG12708-MONOMER" "PF04307 family inner membrane protein YbcI" ["YbcI"] "MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVFIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGMLLMGMLWWRRR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG12709-MONOMER" "DUF808 domain-containing inner membrane protein YedI" ["YedI"] "MLLAGSSLLTLLDDIATLLDDISVMGKLAAKKTAGVLGDDLSLNAQQVSGVRANRELPVVWGVAKGSLINKVILVPLALIISAFIPWAITPLLMIGGAFLCFEGVEKVLHMLEARKHKEDPAQSQQRLEKLAAQDPLKFEKDKIKGAIRTDFILSAEIVAITLGIVAEAPLLNQVLVLSGIALVVTVGVYGLVGVIVKIDDLGYWLAEKSSALMQALGKGLLIIAPWLMKALSIVGTLAMFLVGGGIVVHGIAPLHHAIEHFAGQQSAVVAMILPTVLNLILGFIIGGIVVLGVKAVEKMRGQAH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12707-MONOMER" "DUF3561 domain-containing inner membrane protein YgbE" ["YgbE"] "MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12708-MONOMER" "PF04307 family inner membrane protein YbcI" ["YbcI"] "MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVFIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGMLLMGMLWWRRR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12709-MONOMER" "DUF808 domain-containing inner membrane protein YedI" ["YedI"] "MLLAGSSLLTLLDDIATLLDDISVMGKLAAKKTAGVLGDDLSLNAQQVSGVRANRELPVVWGVAKGSLINKVILVPLALIISAFIPWAITPLLMIGGAFLCFEGVEKVLHMLEARKHKEDPAQSQQRLEKLAAQDPLKFEKDKIKGAIRTDFILSAEIVAITLGIVAEAPLLNQVLVLSGIALVVTVGVYGLVGVIVKIDDLGYWLAEKSSALMQALGKGLLIIAPWLMKALSIVGTLAMFLVGGGIVVHGIAPLHHAIEHFAGQQSAVVAMILPTVLNLILGFIIGGIVVLGVKAVEKMRGQAH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12710-MONOMER" "putative HD superfamily phosphohydrolase YedJ" ["YedJ"] "MDLQHWQAQFENWLKNHHQHQDAAHDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSLAKNHPQRQRSSILAAEETRRLLREEFEQFPAEKIEAVCHAIAAHSFSAQIAPLTTEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDGEDPFAQHRPLDDKRYALDHFQTKLLKLPQTMQTARGKQLAQHNAHFLVEFMAKLSAELAGENEGVDHKVIDAFSSAG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12712-MONOMER" "S-ribosylhomocysteine lyase" ["LuxS", "YgaG"] "MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELALPKEKLQELHI" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"FE+2": 1} 0 "EG12713-MONOMER" "amino acid exporter YddG" ["YddG"] "MTRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLSGLLLIFTVGFPRIRQIPKGYLLAGSLLFVSYEICLALSLGYAATHHQAIEVGMVNYLWPSLTILFAILFNGQKTNWLIVPGLLLALVGVCWVLGGDNGLHYDEIINNITTSPLSYFLAFIGAFIWAAYCTVTNKYARGFNGITVFVLLTGASLWVYYFLTPQPEMIFSTPVMIKLISAAFTLGFAYAAWNVGILHGNVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGALMVCGGSLLCWLATRRG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12717-MONOMER" "stationary phase mismatch/uracil DNA glycosylase" ["YgjF", "Mug", "dsUDG"] "MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQAGFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQANEVSKQELHAGGRKLIEKIEDYQPQALAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELDQALVVRGR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12794-MONOMER" "ribosome assembly factor YhbY" ["YhbY"] "MNLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPTKERKISLPR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12799-MONOMER" "intermembrane phospholipid transport system, substrate binding protein MlaD" ["YrbD", "MlaD"] "MQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTEPTYTLYATFDNIGGLKARSPVSIGGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSLSIRTSGLLGEQYLALNVGFEDPELGTAILKDGDTIQDTKSAMVLEDLIGQFLYGSKGDDNKNSGDAPAAAPGNNETTEPVGTTK" ["CCO-PM-BAC-NEG"] ["CCO-EXTRACELLULAR", "CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"EG12799-MONOMER" "intermembrane phospholipid transport system, substrate binding protein MlaD" ["YrbD", "MlaD"] "MQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTEPTYTLYATFDNIGGLKARSPVSIGGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSLSIRTSGLLGEQYLALNVGFEDPELGTAILKDGDTIQDTKSAMVLEDLIGQFLYGSKGDDNKNSGDAPAAAPGNNETTEPVGTTK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "EG12830-MONOMER" "DUF2496 domain-containing protein YbaM" ["YbaM", "small protein involved in the cell envelope stress response"] "MSLENAPDDVKLAVDLIVLLEENQIPASTVLRALDIVKRDYEKKLTRDDEAEK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12842-MONOMER" "DUF1418 domain-containing protein YbjC" ["YbjC"] "MRAIGKLPKGVLILEFIGMMLLAVALLSVSDSLSLPEPFSRPEVQILMIFLGVLLMLPAAVVVILQVAKRLAPQLMNRPPQYSRSEREKDNDANH" ["CCO-MEMBRANE"] [] 0 [] {} 0 -"EG12843-MONOMER" "DUF454 domain-containing inner membrane protein YbaN" ["YbaN"] "MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDEKQEKH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12843-MONOMER" "DUF454 domain-containing inner membrane protein YbaN" ["YbaN"] "MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDEKQEKH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "EG12844-MONOMER" "YefM antitoxin of the YoeB-YefM toxin-antitoxin pair and DNA binding transcriptional repressor" ["YefM"] "MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKDIIE" [] [] 0 [] {} 1 "EG12845-MONOMER" "CRISPR-associated endoribonuclease Cas2" ["YgbF", "Cas2"] "MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSAKIREMIWEQIAGLAEEGNVVMAWATNTETGFEFQTFGLNRRTPVDLDGLRLVSFLPV" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EG12850-MONOMER" "putative autotransporter adhesin YfaL" ["YfaJ", "YfaK", "YfaF", "YfaL"] "MRIIFLRKEYLSLLPSMIASLFSANGVAAVTDSCQGYDVKASCQASRQSLSGITQDWSIADGQWLVFSDMTNNASGGAVFLQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW" [] ["CCO-PERI-BAC", "CCO-OUTER-MEM", "CCO-EXTRACELLULAR", "CCO-MEMBRANE"] 0 [] {} 0 @@ -1661,18 +1661,18 @@ "EG12861-MONOMER" "DUF2594 domain-containing protein YecF" ["YecF"] "MSTPDFSTAENNQELANEVSCLKAMLTLMLQAMGQADAGRVMLKMEKQLALIEDETQAAVFSKTVKQIKQAYRQ" [] [] 0 [] {} 0 "EG12865-MONOMER" "DUF465 domain-containing protein YdcH" ["YdcH"] "MFPEYRDLISRLKNENPRFMSLFDKHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQLKDEMLKILQQESVKEV" [] [] 0 [] {} 0 "EG12866-MONOMER" "RNA chaperone ProQ" ["YobE", "YoeC", "YebJ", "ProQ", "RNA chaperone, involved in posttranscriptional control of ProP levels"] "MENQPKLNSSKEVIAFLAERFPHCFSAEGEARPLKIGIFQDLVDRVAGEMNLSKTQLRSALRLYTSSWRYLYGVKPGATRVDLDGNPCGELDEQHVEHARKQLEEAKARVQAQRAEQQAKKREAAATAGEKEDAPRRERKPRPTTPRRKEGAERKPRAQKPVEKAPKTVKAPREEQHTPVSDISALTVGQALKVKAGQNAMDATVLEITKDGVRVQLNSGMSLIVRAEHLVF" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12867-MONOMER" "peptidoglycan DD-carboxypeptidase/peptidoglycan DD-endopeptidase" ["YaiH", "AmpH", "penicillin-binding protein", "DD-carboxypeptidase/DD-endopeptidase AmpH"] "MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGNQRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGARVPTYNGTPITLVNLATHTSALPREQPGGAAHRPVFVWPTREQRWKYLSTAKLKAAPGSQAAYSNLAFDLLADALANASGKPYTQLFEEQITRPLGMKDTTYTPSPDQCRRLMVAERGASPCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQRSNQADRMQTLIYQRAQFTKVIGMDVPGKADALGLGWVYMAPKEGRPGIIQKTGGGGGFITYMAMIPQKNIGAFVVVTRSPLTRFKNMSDGINDLVTELSGNKPLVIPAS" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 +"EG12867-MONOMER" "peptidoglycan DD-carboxypeptidase/peptidoglycan DD-endopeptidase" ["YaiH", "AmpH", "penicillin-binding protein", "DD-carboxypeptidase/DD-endopeptidase AmpH"] "MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGNQRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGARVPTYNGTPITLVNLATHTSALPREQPGGAAHRPVFVWPTREQRWKYLSTAKLKAAPGSQAAYSNLAFDLLADALANASGKPYTQLFEEQITRPLGMKDTTYTPSPDQCRRLMVAERGASPCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQRSNQADRMQTLIYQRAQFTKVIGMDVPGKADALGLGWVYMAPKEGRPGIIQKTGGGGGFITYMAMIPQKNIGAFVVVTRSPLTRFKNMSDGINDLVTELSGNKPLVIPAS" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 "EG12868-MONOMER" "protein YciN" ["YciN"] "MNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYFLDEQGLPTAKSTAVFNMFKHLAHVLSEKYHLVD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EG12870-MONOMER" "DUF697 domain-containing inner membrane protein YcjF" ["YcjF"] "MTEPLKPRIDFDGPLEVDQNPKFRAQQTFDENQAQNFAPATLDEAQEEEGQVEAVMDAALRPKRSLWRKMVMGGLALFGASVVGQGVQWTMNAWQTQDWVALGGCAAGALIIGAGVGSVVTEWRRLWRLRQRAHERDEARDLLHSHGTGKGRAFCEKLAQQAGIDQSHPALQRWYASIHETQNDREVVSLYAHLVQPVLDAQARREISRSAAESTLMIAVSPLALVDMAFIAWRNLRLINRIATLYGIELGYYSRLRLFKLVLLNIAFAGASELVREVGMDWMSQDLAARLSTRAAQGIGAGLLTARLGIKAMELCRPLPWIDDDKPRLGDFRRQLIGQVKETLQKGKTPSEK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EG12874-MONOMER" "putative lipoprotein YajI" ["YajI"] "MNTNVFRLLLLGSLFSLSACVQQSEVRQMKHSVSTLNQEMTQLNQETVKITQQNRLNAKSSSGVYLLPGAKTPARLESQIGTLRMSLVNITPDADGTTLTLRIQGESNDPLPAFSGTVEYGQIQGTIDNFQEINVQNQLINAPASVLAPSDVDIPLQLKGISVDQLGFVRIHDIQPVMQ" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 0 -"EG12875-MONOMER" "outer membrane lipoprotein YbhC" ["YbhC"] "MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"EG12870-MONOMER" "DUF697 domain-containing inner membrane protein YcjF" ["YcjF"] "MTEPLKPRIDFDGPLEVDQNPKFRAQQTFDENQAQNFAPATLDEAQEEEGQVEAVMDAALRPKRSLWRKMVMGGLALFGASVVGQGVQWTMNAWQTQDWVALGGCAAGALIIGAGVGSVVTEWRRLWRLRQRAHERDEARDLLHSHGTGKGRAFCEKLAQQAGIDQSHPALQRWYASIHETQNDREVVSLYAHLVQPVLDAQARREISRSAAESTLMIAVSPLALVDMAFIAWRNLRLINRIATLYGIELGYYSRLRLFKLVLLNIAFAGASELVREVGMDWMSQDLAARLSTRAAQGIGAGLLTARLGIKAMELCRPLPWIDDDKPRLGDFRRQLIGQVKETLQKGKTPSEK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"EG12874-MONOMER" "putative lipoprotein YajI" ["YajI"] "MNTNVFRLLLLGSLFSLSACVQQSEVRQMKHSVSTLNQEMTQLNQETVKITQQNRLNAKSSSGVYLLPGAKTPARLESQIGTLRMSLVNITPDADGTTLTLRIQGESNDPLPAFSGTVEYGQIQGTIDNFQEINVQNQLINAPASVLAPSDVDIPLQLKGISVDQLGFVRIHDIQPVMQ" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 +"EG12875-MONOMER" "outer membrane lipoprotein YbhC" ["YbhC"] "MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 0 "EG12876-MONOMER" "sulfur transfer protein TusE" ["YccK", "TusE"] "MLIFEGKEIETDTEGYLKESSQWSEPLAVVIAENEGISLSPEHWEVVRFVRDFYLEFNTSPAIRMLVKAMANKFGEEKGNSRYLYRLFPKGPAKQATKIAGLPKPVKCI" [] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12877-MONOMER" "e14 prophage; protein StfP" ["StfP", "YcfK"] "MHRIDTKTAQKDKFGAGKNGFTRGNPQTGTPATDLDDDYFDMLQEELCSVVEASGASLEKGRHDQLLTALRALLLSRKNPFGDIKSDGTVQTALENLGLGEGAKLNAATATLGRTGFIAIPVMIGGIEQSVIIQWGWNAAKASASGGDGNTVVFPVAFNNACVAVVANYDNVSAPINAVATGGYTTTSFLLRCAAQTGSYYYNWIAIGY" [] [] 0 [] {} 0 "EG12878-MONOMER" "cell division protein ZapA" ["ZapA", "YgfE", "cell division factor ZapA, localizes to the cytokinetic ring"] "MSAQPVDIQIFGRSLRVNCPPDQRDALNQAADDLNQRLQDLKERTRVTNTEQLVFIAALNISYELAQEKAKTRDYAASMEQRIRMLQQTIEQALLEQGRITEKTNQNFE" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 "EG12879-MONOMER" "putative RNA-binding protein YbcJ" ["YbcJ"] "MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EG12880-MONOMER" "diguanylate cyclase DgcN" ["DgcN", "YfiN"] "MMDNDNSLNKRPTFKRALRNISMTSIFITMMLIWLLLSVTSVLTLKQYAQKNLALTAATMTYSLEAAVVFADGPAATETLAALGQQGQFSTAEVRDKQQNILASWHYTRKDPGDTFSNFISHWLFPAPIIQPIRHNGETIGEVRLTARDSSISHFIWFSLAVLTGCILLASGIAITLTRHLHNGLVEALKNITDVVHDVRSNRNFSRRVSEERIAEFHRFALDFNSLLDEMEEWQLRLQAKNAQLLRTALHDPLTGLANRAAFRSGINTLMNNSDARKTSALLFLDGDNFKYINDTWGHATGDRVLIEIAKRLAEFGGLRHKAYRLGGDEFAMVLYDVQSESEVQQICSALTQIFNLPFDLHNGHQTTMTLSIGYAMTIEHASAEKLQELADHNMYQAKHQRAEKLVR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 0 "EG12881-MONOMER" "putative uncharacterized protein YfaH" ["YfaH"] "MNFIRQGLGIALQPELTLKSIAGELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCMEQLVAIGKI" [] ["CCO-MEMBRANE"] 0 [] {} 0 -"EG12933-MONOMER" "ferrous iron transport protein FeoC" ["YhgG", "FeoC"] "MASLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQEEPDGCLSGSCKSCPEGKACLREWWALR" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 0 +"EG12933-MONOMER" "Fe(2+) transport protein FeoC" ["YhgG", "FeoC", "ferrous iron transport protein FeoC"] "MASLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQEEPDGCLSGSCKSCPEGKACLREWWALR" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 0 "EG13217-MONOMER" "uncharacterized protein YbaE" ["YbaE"] "MRLLNRLNQYQRLWQPSAGKPQTVTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQALETGKQQDVLELAQLAPGELRTLLQPFMGGQWQNDTPTLRIPYYRPLEPLQPGFLPGRAEQHLAGQIFSGLTRFDNNTQRPIGDLAHHWETSTDGLRWDFYLRSTLHWHNGDAVKASHLHQRLLMLLQLPALDQLFISVKRIEVTHPQCLTFFLHRPDYWLAHRLASYCSHLAHPQFPLIGTGPFRLTQFTAELVRLESHDYYHLRHPLLKAVEYWITPPLFEKDLGTSCRHPVQITIGKPEELQRVSQVSSGISLGFCYLTLRKSPRLSLWQARKVISIIHQSGLLQTLEVGENLITASHALLPGWTIPHWQVPDEVKLPKTLTLVYHLPIELHTMAERLQATLAAEGCELTIIFHNAKNWDDTTLQAHADLMMGDRLIGEAPEYTLEQWLRCDPLWPHVFDAPAYAHLQSTLDAVQIMPDEENRFNALKAVFSQLMTDATLTPLFNYHYRISAPPGVNGVRLTPRGWFEFTEAWLPAPSQ" [] ["CCO-PERI-BAC"] 0 [] {} 0 "EG13236-MONOMER" "α-mannosidase" ["YbgG", "MngB"] "MKAVSRVHITPHMHWDREWYFTTEESRILLVNNMEEILCRLEQDNEYKYYVLDGQTAILEDYFAVKPENKDRVKKQVEAGKLIIGPWYTQTDTTIVSAESIVRNLMYGMRDCLAFGEPMKIGYLPDSFGMSGQLPHIYNGFGITRTMFWRGCSERHGTDKTEFLWQSSDGSEVTAQVLPLGYAIGKYLPADENGLRKRLDSYFDVLEKASVTKEILLPNGHDQMPLQQNIFEVMDKLREIYPQRKFVMSRFEEVFEKIEAQRDNLATLKGEFIDGKYMRVHRTIGSTRMDIKIAHARIENKIVNLLEPLATLAWTLGFEYHHGLLEKMWKEILKNHAHDSIGCCCSDKVHREIVARFELAEDMADNLIRFYMRKIADNMPQSDADKLVLFNLMPWPREEVINTTVRLRASQFNLRDDRGQPVPYFIRHAREIDPGLIDRQIVHYGNYDPFMEFDIQINQIVPSMGYRTLYIEANQPGNVIAAKSDAEGILENAFWQIALNEDGSLQLVDKDSGVRYDRVLQIEESSDDGDEYDYSPAKEEWVITAANAKPQCDIIHEAWQSRAVIRYDMAVPLNLSERSARQSTGRVGVVLVVTLSHNSRRIDVDINLDNQADDHRLRVLVPTPFNTDSVLADTQFGSLTRPVNDSAMNNWQQEGWKEAPVPVWNMLNYVALQEGRNGMAVFSEGLREFEVIGEEKKTFAITLLRGVGLLGKEDLLLRPGRPSGIKMPVPDSQLRGLLSCRLSLLSYTGTPTAAGVAQQARAWLTPVQCYNKIPWDVMKLNKAGFNVPESYSLLKMPPVGCLISALKKAEDRQEVILRLFNPAESATCDATVAFSREVISCSETMMDEHITTEENQGSNLSGPFLPGQSRTFSYRLA" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "EG20249-MONOMER" "DNA-binding transcriptional repressor UxuR" ["UxuR"] "MKSATSAQRPYQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVEVRRGAGIYVLDNSGSQNTDSPDANVCNDAGPFELLQARQLLESNIAEFAALQATREDIVKMRQALQLEERELASSAPGSSESGDMQFHLAIAEATHNSMLVELFRQSWQWRENNPMWIQLHSHLDDSLYRKEWLGDHKQILAALIKKDARAAKLAMWQHLENVKQRLLEFSNVDDIYFDGYLFDSWPLDKVDA" [] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -1683,7 +1683,7 @@ "EG50004-MONOMER" "ribosome modulation factor" ["Res", "RimF", "Rmf"] "MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRVVMA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "EMRB-MONOMER" "multidrug efflux pump membrane subunit EmrB" ["EmrB"] "MQQQKPLEGAQLVIMTIALSLATFMQVLDSTIANVAIPTIAGNLGSSLSQGTWVITSFGVANAISIPLTGWLAKRVGEVKLFLWSTIAFAIASWACGVSSSLNMLIFFRVIQGIVAGPLIPLSQSLLLNNYPPAKRSIALALWSMTVIVAPICGPILGGYISDNYHWGWIFFINVPIGVAVVLMTLQTLRGRETRTERRRIDAVGLALLVIGIGSLQIMLDRGKELDWFSSQEIIILTVVAVVAICFLIVWELTDDNPIVDLSLFKSRNFTIGCLCISLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGIIPVILSPIIGRFAHKLDMRRLVTFSFIMYAVCFYWRAYTFEPGMDFGASAWPQFIQGFAVACFFMPLTTITLSGLPPERLAAASSLSNFTRTLAGSIGTSITTTMWTNRESMHHAQLTESVNPFNPNAQAMYSQLEGLGMTQQQASGWIAQQITNQGLIISANEIFWMSAGIFLVLLGLVWFAKPPFGAGGGGGGAH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "EMRD-MONOMER" "multidrug efflux pump EmrD" ["YicQ", "EmrD"] "MKRQRNVNLLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIVLCWLPLATRMSHQGQPV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"EMRE-MONOMER" "DLP12 prophage; multidrug/betaine/choline efflux transporter EmrE" ["MvrC", "EmrE", "EBR"] "MNPYIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSRSTPH" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 +"EMRE-MONOMER" "DLP12 prophage; multidrug/betaine/choline efflux transporter EmrE" ["MvrC", "EmrE", "EBR"] "MNPYIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSRSTPH" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "EMRY-MONOMER" "tripartite efflux pump membrane subunit EmrY" ["EmrY"] "MAITKSTPAPLTGGTLWCVTIALSLATFMQMLDSTISNVAIPTISGFLGASTDEGTWVITSFGVANAIAIPVTGRLAQRIGELRLFLLSVTFFSLSSLMCSLSTNLDVLIFFRVVQGLMAGPLIPLSQSLLLRNYPPEKRTFALALWSMTVIIAPICGPILGGYICDNFSWGWIFLINVPMGIIVLTLCLTLLKGRETETSPVKMNLPGLTLLVLGVGGLQIMLDKGRDLDWFNSSTIIILTVVSVISLISLVIWESTSENPILDLSLFKSRNFTIGIVSITCAYLFYSGAIVLMPQLLQETMGYNAIWAGLAYAPIGIMPLLISPLIGRYGNKIDMRLLVTFSFLMYAVCYYWRSVTFMPTIDFTGIILPQFFQGFAVACFFLPLTTISFSGLPDNKFANASSMSNFFRTLSGSVGTSLTMTLWGRRESLHHSQLTATIDQFNPVFNSSSQIMDKYYGSLSGVLNEINNEITQQSLSISANEIFRMAAIAFILLTVLVWFAKPPFTAKGVG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "ENOLASE-MONOMER" "enolase" ["Eno"] "MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA" ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-CYTOSKELETON"] ["CCO-EXTRACELLULAR", "CCO-CYTOSOL", "CCO-CYTOSKELETON"] 1 [] {"MG+2": 1} 1 "ENOYL-ACP-REDUCT-NADH-MONOMER" "enoyl-[acyl-carrier-protein] reductase" ["Gts", "QmeA", "EnvM", "FabI"] "MGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIAAMNELELK" ["CCO-MEMBRANE", "CCO-CYTOSOL"] [] 1 [] {} 1 @@ -1699,8 +1699,8 @@ "EUTB-MONOMER" "ethanolamine ammonia-lyase subunit α" ["EutB"] "MKLKTTLFGNVYQFKDVKEVLAKANELRSGDVLAGVAAASSQERVAAKQVLSEMTVADIRNNPVIAYEDDCVTRLIQDDVNETAYNQIKNWSISELREYVLSDETSVDDIAFTRKGLTSEVVAAVAKICSNADLIYGAKKMPVIKKANTTIGIPGTFSARLQPNDTRDDVQSIAAQIYEGLSFGVGDAVIGVNPVTDDVENLSRVLDTIYGVIDKFNIPTQGCVLAHVTTQIEAIRRGAPGGLIFQSICGSEKGLKEFGVELAMLDEARAVGAEFNRIAGENCLYFETGQGSALSAGANFGADQVTMEARNYGLARHYDPFIVNTVVGFIGPEYLYNDRQIIRAGLEDHFMGKLSGISMGCDCCYTNHADADQNLNENLMILLATAGCNYIMGMPLGDDIMLNYQTTAFHDTATVRQLLNLRPSPEFERWLESMGIMANGRLTKRAGDPSLFF" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "EUTC-MONOMER" "ethanolamine ammonia-lyase subunit β" ["EutC"] "MDQKQIEEIVRSVMASMGQAAPAPSEAKCATTNCAAPVTSESCALDLGSAEAKAWIGVENPHRADVLTELRRSTVARVCTGRAGPRPRTQALLRFLADHSRSKDTVLKEVPEEWVKAQGLLEVRSEISDKNLYLTRPDMGRRLCAEAVEALKAQCVANPDVQVVISDGLSTDAITVNYEEILPPLMAGLKQAGLKVGTPFFVRYGRVKIEDQIGEILGAKVVILLVGERPGLGQSESLSCYAVYSPRMATTVEADRTCISNIHQGGTPPVEAAAVIVDLAKRMLEQKASGINMTR" [] ["CCO-CYTOSOL"] 0 [] {} 1 "EVGA-MONOMER" "DNA-binding transcriptional activator EvgA" ["EvgA response regulator"] "MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"EVGS-MONOMER" "sensor histidine kinase EvgS" [] "MKFLPYIFLLCCGLWSTISFADEDYIEYRGISSNNRVTLDPLRLSNKELRWLASKKNLVIAVHKSQTATLLHTDSQQRVRGINADYLNLLKRALNIKLTLREYADHQKAMDALAEGEVDIVLSHLVTSPPLNNDIAATKPLIITFPALVTTLHDSMRPLTSPKPVNIARVANYPPDEVIHQSFPKATIISFTNLYQALASVSAGHNDYFIGSNIITSSMISRYFTHSLNVVKYYNSPRQYNFFLTRKESVILNEVLNRFVDALTNEVRYEVSQNWLDTGNLAFLNKPLELTEHEKQWIKQHPNLKVLENPYSPPYSMTDENGSVRGVMGDILNIITLQTGLNFSPITVSHNIHAGTQLSPGGWDIIPGAIYSEDRENNVLFAEAFITTPYVFVMQKAPDSEQTLKKGMKVAIPYYYELHSQLKEMYPEVEWIQVDNASAAFHKVKEGELDALVATQLNSRYMIDHYYPNELYHFLIPGVPNASLSFAFPRGEPELKDIINKALNAIPPSEVLRLTEKWIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVATVEAKAEQPITLPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLREQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQVAHIAPQYRHLDIEALKNNTANDLQLMQEILMTFQHETHKDLPAAFQALEAGDNRTFHQCIHRIHGAANILNLQKLINISHQLEITPVSDDSKPEILQLLNSVKEHIAELDQEIAVFCQKND" [] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"EXUT-MONOMER" "hexuronate transporter" ["ExuT"] "MRKIKGLRWYMIALVTLGTVLGYLTRNTVAAAAPTLMEELNISTQQYSYIIAAYSAAYTVMQPVAGYVLDVLGTKIGYAMFAVLWAVFCGATALAGSWGGLAVARGAVGAAEAAMIPAGLKASSEWFPAKERSIAVGYFNVGSSIGAMIAPPLVVWAIVMHSWQMAFIISGALSFIWAMAWLIFYKHPRDQKHLTDEERDYIINGQEAQHQVSTAKKMSVGQILRNRQFWGIALPRFLAEPAWGTFNAWIPLFMFKVYGFNLKEIAMFAWMPMLFADLGCILGGYLPPLFQRWFGVNLIVSRKMVVTLGAVLMIGPGMIGLFTNPYVAIMLLCIGGFAHQALSGALITLSSDVFGRNEVATANGLTGMSAWLASTLFALVVGALADTIGFSPLFAVLAVFDLLGALVIWTVLQNKPAIEVAQETHNDPAPQH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"EVGS-MONOMER" "sensor histidine kinase EvgS" [] "MKFLPYIFLLCCGLWSTISFADEDYIEYRGISSNNRVTLDPLRLSNKELRWLASKKNLVIAVHKSQTATLLHTDSQQRVRGINADYLNLLKRALNIKLTLREYADHQKAMDALAEGEVDIVLSHLVTSPPLNNDIAATKPLIITFPALVTTLHDSMRPLTSPKPVNIARVANYPPDEVIHQSFPKATIISFTNLYQALASVSAGHNDYFIGSNIITSSMISRYFTHSLNVVKYYNSPRQYNFFLTRKESVILNEVLNRFVDALTNEVRYEVSQNWLDTGNLAFLNKPLELTEHEKQWIKQHPNLKVLENPYSPPYSMTDENGSVRGVMGDILNIITLQTGLNFSPITVSHNIHAGTQLSPGGWDIIPGAIYSEDRENNVLFAEAFITTPYVFVMQKAPDSEQTLKKGMKVAIPYYYELHSQLKEMYPEVEWIQVDNASAAFHKVKEGELDALVATQLNSRYMIDHYYPNELYHFLIPGVPNASLSFAFPRGEPELKDIINKALNAIPPSEVLRLTEKWIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVATVEAKAEQPITLPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLREQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQVAHIAPQYRHLDIEALKNNTANDLQLMQEILMTFQHETHKDLPAAFQALEAGDNRTFHQCIHRIHGAANILNLQKLINISHQLEITPVSDDSKPEILQLLNSVKEHIAELDQEIAVFCQKND" [] ["CCO-PERI-BAC", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"EXUT-MONOMER" "hexuronate transporter" ["ExuT"] "MRKIKGLRWYMIALVTLGTVLGYLTRNTVAAAAPTLMEELNISTQQYSYIIAAYSAAYTVMQPVAGYVLDVLGTKIGYAMFAVLWAVFCGATALAGSWGGLAVARGAVGAAEAAMIPAGLKASSEWFPAKERSIAVGYFNVGSSIGAMIAPPLVVWAIVMHSWQMAFIISGALSFIWAMAWLIFYKHPRDQKHLTDEERDYIINGQEAQHQVSTAKKMSVGQILRNRQFWGIALPRFLAEPAWGTFNAWIPLFMFKVYGFNLKEIAMFAWMPMLFADLGCILGGYLPPLFQRWFGVNLIVSRKMVVTLGAVLMIGPGMIGLFTNPYVAIMLLCIGGFAHQALSGALITLSSDVFGRNEVATANGLTGMSAWLASTLFALVVGALADTIGFSPLFAVLAVFDLLGALVIWTVLQNKPAIEVAQETHNDPAPQH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "F16B-MONOMER" "fructose-1,6-bisphosphatase 1" ["Fdp", "Fbp", "fructose-1,6-bisphosphatase I"] "MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVGTIFSIYRRVTPVGTPVTEEDFLQPGNKQVAAGYVVYGSSTMLVYTTGCGVHAFTYDPSLGVFCLCQERMRFPEKGKTYSINEGNYIKFPNGVKKYIKFCQEEDKSTNRPYTSRYIGSLVADFHRNLLKGGIYLYPSTASHPDGKLRLLYECNPMAFLAEQAGGKASDGKERILDIIPETLHQRRSFFVGNDHMVEDVERFIREFPDA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 2} 1 "FABA-MONOMER" "β-hydroxyacyl-acyl carrier protein dehydratase/isomerase" ["FabA", "β-hydroxyacyl-ACP dehydratase/isomerase"] "MVDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLPTAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVGLFQDTSAF" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "FABB-MONOMER" "3-oxoacyl-[acyl carrier protein] synthase 1" ["FabC", "FabB", "β-ketoacyl-ACP synthase I", "β-ketoacyl-[acyl carrier protein] synthase I"] "MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGAVRCMKMAMHGVDTPIDYLNSHGTSTPVGDVKELAAIREVFGDKSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLKD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -1718,17 +1718,17 @@ "FECB-MONOMER" "ferric citrate ABC transporter periplasmic binding protein" ["ferric dicitrate ABC transporter - periplasmic binding protein"] "MLAFIRFLFAGLLLVISHAFAATVQDEHGTFTLEKTPQRIVVLELSFADALAAVDVIPIGIADDNDAKRILPEVRAHLKPWQSVGTRAQPSLEAIAALKPDLIIADSSRHAGVYIALQQIAPVLLLKSRNETYAENLQSAAIIGEMVGKKREMQARLEQHKERMAQWASQLPKGTRVAFGTSREQQFNLHTQETWTGSVLASLGLNVPAAMAGASMPSIGLEQLLAVNPAWLLVAHYREESIVKRWQQDPLWQMLTAAQKQQVASVDSNTWARMRGIFAAERIAADTVKIFHHQPLTVVK" [] ["CCO-PERI-BAC"] 0 [] {} 1 "FECC-MONOMER" "ferric citrate ABC transporter membrane subunit FecC" [] "MTAIKHPVLLWGLPVAALIIIFWLSLFCYSAIPVSGADATRALLPGHTPTLPEALVQNLRLPRSLVAVLIGASLALAGTLLQTLTHNPMASPSLLGINSGAALAMALTSALSPTPIAGYSLSFIAACGGGVSWLLVMTAGGGFRHTHDRNKLILAGIALSAFCMGLTRITLLLAEDHAYGIFYWLAGGVSHARWQDVWQLLPVVVTAVPVVLLLANQLNLLNLSDSTAHTLGVNLTRLRLVINMLVLLLVGACVSVAGPVAFIGLLVPHLARFWAGFDQRNVLPVSMLLGATLMLLADVLARALAFPGDLPAGAVLALIGSPCFVWLVRRRG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "FECD-MONOMER" "ferric citrate ABC transporter membrane subunit FecD" [] "MKIALVIFITLALAGCALLSLHMGVIPVPWRALLTDWQAGHEHYYVLMEYRLPRLLLALFVGAALAVAGVLIQGIVRNPLASPDILGVNHAASLASVGALLLMPSLPVMVLPLLAFAGGMAGLILLKMLAKTHQPMKLALTGVALSACWASLTDYLMLSRPQDVNNALLWLTGSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLGVSVPHTRFWALLLAVAMTSTGVAACGPISFIGLVVPHMMRSITGGRHRRLLPVSALTGALLLVVADLLARIIHPPLELPVGVLTAIIGAPWFVWLLVRMR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"FECE-MONOMER" "ferric citrate ABC transporter ATP binding subunit" ["ferric dicitrate ABC transporter - ATP binding subunit"] "MTLRTENLTVSYGTDKVLNDVSLSLPTGKITALIGPNGCGKSTLLNCFSRLLMPQSGTVFLGDNPINMLSSRQLARRLSLLPQHHLTPEGITVQELVSYGRNPWLSLWGRLSAEDNARVNVAMNQTRINHLAVRRLTELSGGQRQRAFLAMVLAQNTPVVLLDEPTTYLDINHQVDLMRLMGELRTQGKTVVAVLHDLNQASRYCDQLVVMANGHVMAQGTPEEVMTPGLLRTVFSVEAEIHPEPVSGRPMCLMR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"FECE-MONOMER" "ferric citrate ABC transporter ATP binding subunit" ["ferric dicitrate ABC transporter - ATP binding subunit"] "MTLRTENLTVSYGTDKVLNDVSLSLPTGKITALIGPNGCGKSTLLNCFSRLLMPQSGTVFLGDNPINMLSSRQLARRLSLLPQHHLTPEGITVQELVSYGRNPWLSLWGRLSAEDNARVNVAMNQTRINHLAVRRLTELSGGQRQRAFLAMVLAQNTPVVLLDEPTTYLDINHQVDLMRLMGELRTQGKTVVAVLHDLNQASRYCDQLVVMANGHVMAQGTPEEVMTPGLLRTVFSVEAEIHPEPVSGRPMCLMR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "FEOB-MONOMER" "Fe2+ transporter FeoB" ["FeoB", "ferrous iron transporter", "ferrous iron transport protein B"] "MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVSNTLTAEPSRFTTAVDKIVLNRFLGLPIFLFVMYLMFLLAINIGGALQPLFDVGSVALFVHGIQWIGYTLHFPDWLTIFLAQGLGGGINTVLPLVPQIGMMYLFLSFLEDSGYMARAAFVMDRLMQALGLPGKSFVPLIVGFGCNVPSVMGARTLDAPRERLMTIMMAPFMSCGARLAIFAVFAAAFFGQNGALAVFSLYMLGIVMAVLTGLMLKYTIMRGEATPFVMELPVYHVPHVKSLIIQTWQRLKGFVLRAGKVIIIVSIFLSAFNSFSLSGKIVDNINDSALASVSRVITPVFKPIGVHEDNWQATVGLFTGAMAKEVVVGTLNTLYTAENIQDEEFNPAEFNLGEELFSAIDETWQSLKDTFSLSVLMNPIEASKGDGEMGTGAMGVMDQKFGSAAAAYSYLIFVLLYVPCISVMGAIARESSRGWMGFSILWGLNIAYSLATLFYQVASYSQHPTYSLVCILAVILFNIVVIGLLRRARSRVDIELLATRKSVSSCCAASTTGDCH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "FEPB-MONOMER" "ferric enterobactin ABC transporter periplasmic binding protein" [] "MRLAPLYRNALLLTGLLLSGIAAVQAADWPRQITDSRGTHTLESQPQRIVSTSVTLTGSLLAIDAPVIASGATTPNNRVADDQGFLRQWSKVAKERKLQRLYIGEPSAEAVAAQMPDLILISATGGDSALALYDQLSTIAPTLIINYDDKSWQSLLTQLGEITGHEKQAAERIAQFDKQLAAAKEQIKLPPQPVTAIVYTAAAHSANLWTPESAQGQMLEQLGFTLAKLPAGLNASQSQGKRHDIIQLGGENLAAGLNGESLFLFAGDQKDADAIYANPLLAHLPAVQNKQVYALGTETFRLDYYSAMQVLDRLKALF" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 -"FEPC-MONOMER" "ferric enterobactin ABC transporter ATP binding subunit" [] "MTESVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIYGLRCMIIDDPVAGTPLVVPLGRTAPSTANS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"FEPC-MONOMER" "ferric enterobactin ABC transporter ATP binding subunit" [] "MTESVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIYGLRCMIIDDPVAGTPLVVPLGRTAPSTANS" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 1 "FEPD-MONOMER" "ferric enterobactin ABC transporter membrane subunit FebD" ["FepD"] "MSGSVAVTRAIAVPGLLLLLIIATALSLLIGAKSLPASVVLEAFSGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGVALAAVLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAIVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRVIVPGELRVSVVSAFIGAPVLIFLVRRKTRGGA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "FEPG-MONOMER" "ferric enterobactin ABC transporter membrane subunit FepG" [] "MIYVSRRLLITCLLLVSACVVAGIWGLRSGAVTLETSQVFAALMGDAPRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSGVLVAMVLFGQDLTAIALSAMVGGIVTSLLVWLLAWRNGIDTFRLIIIGIGVRAMLVAFNTWLLLKASLETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGVSVERSRLLMMLVAVVLTAAATALAGPISFIALVAPHIARRISGTARWGLTQAALCGALLLLAADLCAQQLFMPYQLPVGVVTVSLGGIYLIVLLIQESRKK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "FERREDOXIN-MONOMER" "reduced ferredoxin" ["Fdx"] "MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEPESRLSCQARVTDEDLVVEIPRYTINHAREH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"CPD-6": 1} 0 "FGAMSYN-MONOMER" null ["PurI", "PurL"] "MMEILRGSPALSAFRINKLLARFQAARLPVHNIYAEYVHFADLNAPLNDDEHAQLERLLKYGPALASHAPQGKLLLVTPRPGTISPWSSKATDIAHNCGLQQVNRLERGVAYYIEAGTLTNEQWQQVTAELHDRMMETVFFALDDAEQLFAHHQPTPVTSVDLLGQGRQALIDANLRLGLALAEDEIDYLQDAFTKLGRNPNDIELYMFAQANSEHCRHKIFNADWVIDGEQQPKSLFKMIKNTFETTPDHVLSAYKDNAAVMEGSEVGRYFADHETGRYDFHQEPAHILMKVETHNHPTAISPWPGAATGSGGEIRDEGATGRGAKPKAGLVGFSVSNLRIPGFEQPWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALNGYFRTYEEKVNSHNGEELRGYHKPIMLAGGIGNIRADHVQKGEINVGAKLVVLGGPAMNIGLGGGAASSMASGQSDADLDFASVQRDNPEMERRCQEVIDRCWQLGDANPILFIHDVGAGGLSNAMPELVSDGGRGGKFELREILSDEPGMSPLEIWCNESQERYVLAVAADQLPLFDELCKRERAPYAVIGEATEELHLSLHDRHFDNQPIDLPLDVLLGKTPKMTRDVQTLKAKGDALAREGITIADAVKRVLHLPTVAEKTFLVTIGDRSVTGMVARDQMVGPWQVPVANCAVTTASLDSYYGEAMAIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANWMAAAGHPGEDAGLYEAVKAVGEELCPALGLTIPVGKDSMSMKTRWQEGNEEREMTSPLSLVISAFARVEDVRHTITPQLSTEDNALLLIDLGKGNNALGATALAQVYRQLGDKPADVRDVAQLKGFYDAIQALVAQRKLLAYHDRSDGGLLVTLAEMAFAGHCGIDADIATLGDDRLAALFNEELGAVIQVRAADREAVESVLAQHGLADCVHYVGQAVSGDRFVITANGQTVFSESRTTLRVWWAETTWQMQRLRDNPECADQEHQAKSNDADPGLNVKLSFDINEDVAAPYIATGARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLTGRTGLEDFHALVACGGFSYGDVLGAGEGWAKSILFNDRVRDEFATFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVRNTSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGRVEVRDAAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTESGRVTIMMPHPERVFRTVSNSWHPENWGEDGPWMRIFRNARKQLG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 -"FHUB-MONOMER" "iron(III) hydroxamate ABC transporter membrane subunit" [] "MSKRIALFPALLLALLVIVATALTWMNFSQALPRSQWAQAAWSPDIDVIEQMIFHYSLLPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGITVTTLWAIPGAMASQFAAQAGACVVGLIVFGVAWGKRLSPVTLILAGLVVSLYCGAINQLLVIFHHDQLQSMFLWSTGTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGLDDGVARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPRLMLASLIGALILWLSDQIILWLTRVWMEVSTGSVTALIGAPLLLWLLPRLRSISAPDMKVNDRVAAERQHVLAFALAGGVLLLMAVVVALSFGRDAHGWTWASGALLEDLMPWRWPRIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWLLPAGSLGAAVTLLIIMIAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPLCRRWLTILPLGGDTARAVGMALTPTRIALLLLAACLTATATMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVFADWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"FHUC-MONOMER" "iron(III) hydroxamate ABC transporter ATP binding subunit" [] "MQEYTNHSDTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLSLVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGETLEMIYGIPMGILPHPAGAAPVSFVY" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 -"FHUD-MONOMER" "iron(III) hydroxamate ABC transporter periplasmic binding protein" [] "MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIGGKA" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 +"FHUB-MONOMER" "Fe(3+) hydroxamate ABC transporter membrane subunit" ["iron(III) hydroxamate ABC transporter membrane subunit"] "MSKRIALFPALLLALLVIVATALTWMNFSQALPRSQWAQAAWSPDIDVIEQMIFHYSLLPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGITVTTLWAIPGAMASQFAAQAGACVVGLIVFGVAWGKRLSPVTLILAGLVVSLYCGAINQLLVIFHHDQLQSMFLWSTGTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGLDDGVARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPRLMLASLIGALILWLSDQIILWLTRVWMEVSTGSVTALIGAPLLLWLLPRLRSISAPDMKVNDRVAAERQHVLAFALAGGVLLLMAVVVALSFGRDAHGWTWASGALLEDLMPWRWPRIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWLLPAGSLGAAVTLLIIMIAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPLCRRWLTILPLGGDTARAVGMALTPTRIALLLLAACLTATATMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVFADWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"FHUC-MONOMER" "Fe(3+) hydroxamate ABC transporter ATP binding subunit" ["iron(III) hydroxamate ABC transporter ATP binding subunit"] "MQEYTNHSDTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLSLVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGETLEMIYGIPMGILPHPAGAAPVSFVY" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"FHUD-MONOMER" "Fe(3+) hydroxamate ABC transporter periplasmic binding protein" ["iron(III) hydroxamate ABC transporter periplasmic binding protein"] "MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIGGKA" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "FLAVODOXIN1-MONOMER" "flavodoxin 1" ["FldA"] "MAITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDLEAYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKWVKQISEELHLDEILNA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "FLAVODOXIN2-MONOMER" "flavodoxin 2" ["FldB"] "MNMGLFYGSSTCYTEMAAEKIRDIIGPELVTLHNLKDDSPKLMEQYDVLILGIPTWDFGEIQEDWEAVWDQLDDLNLEGKIVALYGLGDQLGYGEWFLDALGMLHDKLSTKGVKFVGYWPTEGYEFTSPKPVIADGQLFVGLALDETNQYDLSDERIQSWCEQILNEMAEHYA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "FLAVONADPREDUCT-MONOMER" "flavodoxin/ferredoxin-NADP+ reductase" ["FlxR", "MvrA", "Fpr", "dA1"] "MADWVTGKVTKVQNWTDALFSLTVHAPVLPFTAGQFTKLGLEIDGERVQRAYSYVNSPDNPDLEFYLVTVPDGKLSPRLAALKPGDEVQVVSEAAGFFVLDEVPHCETLWMLATGTAIGPYLSILQLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRIQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQQLLKETRQMTKHLRRRPGHMTAEHYW" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 @@ -1736,11 +1736,11 @@ "FLGC-FLAGELLAR-MOTOR-ROD-PROTEIN" "flagellar basal-body rod protein FlgC" ["FlaW", "FlgC"] "MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATGGVKVADVIESQAPDKLVYEPGNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLTLGQ" ["CCO-CELL-PROJECTION"] ["CCO-PERI-BAC", "CCO-CELL-PROJECTION"] 0 [] {} 1 "FLGF-FLAGELLAR-MOTOR-ROD-PROTEIN" "flagellar basal-body rod protein FlgF" ["FlaX", "FlgF"] "MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVTASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQLTIQGHPVIGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVGRLKLVKATGSEVQRGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDDNAGRANQLLSMS" ["CCO-CELL-PROJECTION"] ["CCO-CELL-PROJECTION"] 0 [] {} 1 "FLGG-FLAGELLAR-MOTOR-ROD-PROTEIN" "flagellar basal-body rod protein FlgG" ["FlaL", "FlgG"] "MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQL" ["CCO-OUTER-MEM", "CCO-CELL-PROJECTION"] ["CCO-CELL-PROJECTION"] 0 [] {} 1 -"FLGH-FLAGELLAR-L-RING" "flagellar L-ring protein" ["FlaY", "FlgH"] "MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNARADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM" [] ["CCO-CELL-PROJECTION", "CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 +"FLGH-FLAGELLAR-L-RING" "flagellar L-ring protein" ["FlaY", "FlgH"] "MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNARADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM" [] ["CCO-CELL-PROJECTION", "CCO-OUTER-MEM"] 0 [] {} 1 "FLGI-FLAGELLAR-P-RING" "flagellar P-ring protein" ["FlaM", "FlgI"] "MIKFLSALILLLVTTAAQAERIRDLTSVQGVRQNSLIGYGLVVGLDGTGDQTTQTPFTTQTLNNMLSQLGITVPTGTNMQLKNVAAVMVTASLPPFGRQGQTIDVVVSSMGNAKSLRGGTLLMTPLKGVDSQVYALAQGNILVGGAGASAGGSSVQVNQLNGGRITNGAVIERELPSQFGVGNTLNLQLNDEDFSMAQQIADTINRVRGYGSATALDARTIQVRVPSGNSSQVRFLADIQNMQVNVTPQDAKVVINSRTGSVVMNREVTLDSCAVAQGNLSVTVNRQANVSQPDTPFGGGQTVVTPQTQIDLRQSGGSLQSVRSSASLNNVVRALNALGATPMDLMSILQSMQSAGCLRAKLEII" ["CCO-CELL-PROJECTION"] ["CCO-PERI-BAC", "CCO-CELL-PROJECTION"] 0 [] {} 1 -"FLIF-FLAGELLAR-MS-RING" "flagellar basal-body MS-ring and collar protein" ["FliF"] "MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSSDESGGELPFWQQQAFIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRRAEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWINNDHE" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-CYTOSOL", "CCO-CELL-PROJECTION"] 0 [] {} 1 -"FLIG-FLAGELLAR-SWITCH-PROTEIN" "flagellar motor switch protein FliG" ["FliG"] "MSNLTGTDKSVILLMTIGEDRAAEVFKHLSQREVQTLSAAMANVTQISNKQLTDVLAEFEQEAEQFAALNINANDYLRSVLVKALGEERAASLLEDILETRDTASGIETLNFMEPQSAADLIRDEHPQIIATILVHLKRAQAADILALFDERLRHDVMLRIATFGGVQPAALAELTEVLNGLLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVITAVREFDGELAQKIIDEMFLFENLVDVDDRSIQRLLQEVDSESLLIALKGAEQPLREKFLRNMSQRAADILRDDLANRGPVRLSQVENEQKAILLIVRRLAETGEMVIGSGEDTYV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CELL-PROJECTION", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"FLIM-FLAGELLAR-C-RING-SWITCH" "flagellar motor switch protein FliM" ["FlaA", "Fla", "FlaQ", "FliM"] "MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CELL-PROJECTION"] 0 [] {} 1 +"FLIF-FLAGELLAR-MS-RING" "flagellar basal-body MS-ring and collar protein" ["FliF"] "MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSSDESGGELPFWQQQAFIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRRAEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWINNDHE" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC", "CCO-CYTOSOL", "CCO-CELL-PROJECTION"] 0 [] {} 1 +"FLIG-FLAGELLAR-SWITCH-PROTEIN" "flagellar motor switch protein FliG" ["FliG"] "MSNLTGTDKSVILLMTIGEDRAAEVFKHLSQREVQTLSAAMANVTQISNKQLTDVLAEFEQEAEQFAALNINANDYLRSVLVKALGEERAASLLEDILETRDTASGIETLNFMEPQSAADLIRDEHPQIIATILVHLKRAQAADILALFDERLRHDVMLRIATFGGVQPAALAELTEVLNGLLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVITAVREFDGELAQKIIDEMFLFENLVDVDDRSIQRLLQEVDSESLLIALKGAEQPLREKFLRNMSQRAADILRDDLANRGPVRLSQVENEQKAILLIVRRLAETGEMVIGSGEDTYV" ["CCO-PM-BAC-NEG"] ["CCO-CELL-PROJECTION", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"FLIM-FLAGELLAR-C-RING-SWITCH" "flagellar motor switch protein FliM" ["FlaA", "Fla", "FlaQ", "FliM"] "MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK" [] ["CCO-PM-BAC-NEG", "CCO-CELL-PROJECTION"] 0 [] {} 1 "FLIN-FLAGELLAR-C-RING-SWITCH" "flagellar motor switch protein FliN" ["MotD", "FliN"] "MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR" [] ["CCO-MEMBRANE", "CCO-CELL-PROJECTION", "CCO-PM-BAC-NEG"] 0 [] {} 1 "FMNREDUCT-MONOMER" "NAD(P)H-flavin reductase" ["FsrC", "FlrD", "FadI", "Fre"] "MTTLSCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDERDKRPFSMASTPDEKGFIELHIGASEINLYAKAVMDRILKDHQIVVDIPHGEAWLRDDEERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVVPVVEQPEAGWRGRTGTVLTAVLQDHGTLAEHDIYIAGRFEMAKIARDLFCSERNAREDRLFGDAFAFI" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "FOCA-MONOMER" "formate channel FocA" ["YcaE", "FocA"] "MKADNPFDLLLPAAMAKVAEEAGVYKATKHPLKTFYLAITAGVFISIAFVFYITATTGTGTMPFGMAKLVGGICFSLGLILCVVCGADLFTSTVLIVVAKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSYSGRSLMDKAFIMVLPVAMFVASGFEHSIANMFMIPMGIVIRDFASPEFWTAVGSAPENFSHLTVMNFITDNLIPVTIGNIIGGGLLVGLTYWVIYLRENDHH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 @@ -1749,25 +1749,25 @@ "FOLD-MONOMER" "bifunctional methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase" ["Ads", "FolD"] "MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "FORMATEDEHYDROGH-MONOMER" "formate dehydrogenase H" ["ChlF", "FdhF", "FDH-H"] "MKKVVTVCPYCASGCKINLVVDNGKIVRAEAAQGKTNQGTLCLKGYYGWDFINDTQILTPRLKTPMIRRQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVUHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVIIEENLYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILWGMGVTQFYQGVETVRSLTSLAMLTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQYVKDPANREKFAKAWGVESLPAHTGYRISELPHRAAHGEVRAAYIMGEDPLQTDAELSAVRKAFEDLELVIVQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPKWDLKTDWQIISEIATRMGYPMHYNNTQEIWDELRHLCPDFYGATYEKMGELGFIQWPCRDTSDADQGTSYLFKEKFDTPNGLAQFFTCDWVAPIDKLTDEYPMVLSTVREVGHYSCRSMTGNCAALAALADEPGYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQVSDRPNKGAIYMTYQWWIGACNELVTENLSPITKTPEYKYCAVRVEPIADQRAAEQYVIDEYNKLKTRLREAALA" ["CCO-CYTOSOL"] ["CCO-PERI-BAC"] 0 [418] {"CPD-7": 1, "Molybdenum": 1, "CPD-15873": 1} 1 "FORMYLTHFDEFORMYL-MONOMER" "formyltetrahydrofolate deformylase" ["YchI", "Tgs", "PurU"] "MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTELEGIFNDSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIGNHDTLRSLVERFDIPFELVSHEGLTRNEHDQKMADAIDAYQPDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYKVLAQRVFVYGNRTIIL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"FPPSYN-MONOMER" "geranyl diphosphate/farnesyl diphosphate synthase" ["IspA"] "MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 3} 0 +"FPPSYN-MONOMER" "geranyl diphosphate/farnesyl diphosphate synthase" ["IspA"] "MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 2} 0 "FRUA-MONOMER" "fructose-specific PTS multiphosphoryl transfer protein FruA" ["FruA", "PtsF", "Enzyme IIBCfru", "EIIBCfru", "EIIB'BCfru", "Enzyme IIB'BCfru"] "MKTLLIIDANLGQARAYMAKTLLGAAARKAKLEIIDNPNDAEMAIVLGDSIPNDSALNGKNVWLGDISRAVAHPELFLSEAKGHAKPYTAPVAATAPVAASGPKRVVAVTACPTGVAHTFMAAEAIETEAKKRGWWVKVETRGSVGAGNAITPEEVAAADLVIVAADIEVDLAKFAGKPMYRTSTGLALKKTAQELDKAVAEATPYEPAGKAQTATTESKKESAGAYRHLLTGVSYMLPMVVAGGLCIALSFAFGIEAFKEPGTLAAALMQIGGGSAFALMVPVLAGYIAFSIADRPGLTPGLIGGMLAVSTGSGFIGGIIAGFLAGYIAKLISTQLKLPQSMEALKPILIIPLISSLVVGLAMIYLIGKPVAGILEGLTHWLQTMGTANAVLLGAILGGMMCTDMGGPVNKAAYAFGVGLLSTQTYGPMAAIMAAGMVPPLAMGLATMVARRKFDKAQQEGGKAALVLGLCFISEGAIPFAARDPMRVLPCCIVGGALTGAISMAIGAKLMAPHGGLFVLLIPGAITPVLGYLVAIIAGTLVAGLAYAFLKRPEVDAVAKAA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "FRUB-MONOMER" "fructose-specific PTS multiphosphoryl transfer protein FruB" ["FruB", "Fpr", "FruF", "diphosphoryl transfer protein", "DTP", "EIIA-M-Hfru", "EIIAfru", "Enzyme IIAfru", "EIIIfru", "Enzyme IIIfru"] "MFQLSVQDIHPGEKAGDKEEAIRQVAAALVQAGNVAEGYVNGMLAREQQTSTFLGNGIAIPHGTTDTRDQVLKTGVQVFQFPEGVTWGDGQVAYVAIGIAASSDEHLGLLRQLTHVLSDDSVAEQLKSATTAEELRALLMGEKQSEQLKLDNEMLTLDIVASDLLTLQALNAARLKEAGAVDATFVTKAINEQPLNLGQGIWLSDSAEGNLRSAIAVSRAANAFDVDGETAAMLVSVAMNDDQPIAVLKRLADLLLDNKADRLLKADAATLLALLTSDDAPTDDVLSAEFVVRNEHGLHARPGTMLVNTIKQFNSDITVTNLDGTGKPANGRSLMKVVALGVKKGHRLRFTAQGADAEQALKAIGDAIAAGLGEGA" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 "FRUCBISALD-CLASSI-MONOMER" "fructose-bisphosphate aldolase class I" ["DhnA", "FbaB"] "MTDIAQLLGKDADNLLQHRCMTIPSDQLYLPGHDYVDRVMIDNNRPPAVLRNMQTLYNTGRLAGTGYLSILPVDQGVEHSAGASFAANPLYFDPKNIVELAIEAGCNCVASTYGVLASVSRRYAHRIPFLVKLNHNETLSYPNTYDQTLYASVEQAFNMGAVAVGATIYFGSEESRRQIEEISAAFERAHELGMVTVLWAYLRNSAFKKDGVDYHVSADLTGQANHLAATIGADIVKQKMAENNGGYKAINYGYTDDRVYSKLTSENPIDLVRYQLANCYMGRAGLINSGGAAGGETDLSDAVRTAVINKRAGGMGLILGRKAFKKSMADGVKLINAVQDVYLDSKITIA" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "FRUCTBISALD-CLASSII-MONOMER" "fructose-bisphosphate aldolase class II" ["Fda", "Ald", "FbaA", "Fba"] "MSKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKPGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAIDVL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"ZN+2": 2} 1 "FRVA-MONOMER" "putative PTS enzyme IIA component FrvA" ["FrvA", "YiiK"] "MAALTASCIDLNIQGNGAYSVLKQLATIALQNGFITDSHQFLQTLLLREKMHSTGFGSGVAVPHGKSACVKQPFVLFARKAQAIDWKASDGEDVNCWICLGVPQSGEEDQVKIIGTLCRKIIHKEFIHQLQQGDTDQVLALLNQTLSS" [] ["CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 1 "FRVB-MONOMER" "putative PTS enzyme IIBC component FrvB" ["FrvB", "YiiJ"] "MESSLRIVAITNCPAGIAHTYMVAEALEQKARSLGHTIKVETQGSSGVENRLSSEEIAAADYVILATGRGLSGDDRARFAGKKVYEIAISQALKNIDQIFSELPTNSQLFAADSGVKLGKQEVQSGSVMSHLMAGVSAALPFVIGGGILVALANMLVQFGLPYTDMSKGAPSFTWVVESIGYLGFTFMIPIMGAYIASSIADKPAFAPAFLVCYLANDKALLGTQSGAGFLGAVVLGLAIGYFVFWFRKVRLGKALQPLLGSMLIPFVTLLVFGVLTYYVIGPVMSDLMGGLLHFLNTIPPSMKFAAAFLVGAMLAFDMGGPINKTAWFFCFSLLEKHIYDWYAIVGVVALMPPVAAGLATFIAPKLFTRQEKEAASSAIVVGATVATEPAIPYALAAPLPMITANTLAGGITGVLVIAFGIKRLAPGLGIFDPLIGLMSPVGSFYLVLAIGLALNISFIIVLKGLWLRRKAKAAQQELVHEH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 -"FRWB-MONOMER" "putative PTS enzyme IIB component FrwB" ["YijK", "EIIBfrw", "Enzyme IIBfrw"] "MTKIIAVTACPSGVAHTYMAAEALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDIGIKFEERFAGKTIVRVNISDAVKRADAIMSKIEAHLAQTA" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 +"FRWB-MONOMER" "putative PTS enzyme IIB component FrwB" ["YijK", "EIIBfrw", "Enzyme IIBfrw"] "MTKIIAVTACPSGVAHTYMAAEALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDIGIKFEERFAGKTIVRVNISDAVKRADAIMSKIEAHLAQTA" [] ["CCO-CYTOSOL"] 0 [] {} 1 "FRWC-MONOMER" "putative PTS enzyme IIC component FrwC" ["YijJ", "EIICfrw", "Enzyme IICfrw"] "MNELVQILKNTRQHLMTGVSHMIPFVVSGGILLAVSVMLYGKGAVPDAVADPNLKKLFDIGVAGLTLMVPFLAAYIGYSIAERSALAPCAIGAWVGNSFGAGFFGALIAGIIGGIVVHYLKKIPVHKVLRSVMPIFIIPIVGTLITAGIMMWGLGEPVGALTNSLTQWLQGMQQGSIVMLAVIMGLMLAFDMGGPVNKVAYAFMLICVAQGVYTVVAIAAVGICIPPLGMGLATLIGRKNFSAEERETGKAALVMGCVGVTEGAIPFAAADPLRVIPSIMVGSVCGAVTAALVGAQCYAGWGGLIVLPVVEGKLGYIAAVAVGAVVTAVCVNVLKSLARKNGSSTDEKEDDLDLDFEIN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"FSR-MONOMER" null ["Fsr"] "MAMSEQPQPVAGAAASTTKARTSFGILGAISLSHLLNDMIQSLILAIYPLLQSEFSLTFMQIGMITLTFQLASSLLQPVVGYWTDKYPMPWSLPIGMCFTLSGLVLLALAGSFGAVLLAAALVGTGSSVFHPESSRVARMASGGRHGLAQSIFQVGGNFGSSLGPLLAAVIIAPYGKGNVAWFVLAALLAIVVLAQISRWYSAQHRMNKGKPKATIINPLPRNKVVLAVSILLILIFSKYFYMASISSYYTFYLMQKFGLSIQNAQLHLFAFLFAVAAGTVIGGPVGDKIGRKYVIWGSILGVAPFTLILPYASLHWTGVLTVIIGFILASAFSAILVYAQELLPGRIGMVSGLFFGFAFGMGGLGAAVLGLIADHTSIELVYKICAFLPLLGMLTIFLPDNRHKD" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"FTSE-MONOMER" "cell division protein FtsE" ["FtsE"] "MIRFEHVSKAYLGGRQALQGVTFHMQPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDINLISRRSYRMLTLSDGHLHGGVGHE" ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"FSR-MONOMER" null ["Fsr"] "MAMSEQPQPVAGAAASTTKARTSFGILGAISLSHLLNDMIQSLILAIYPLLQSEFSLTFMQIGMITLTFQLASSLLQPVVGYWTDKYPMPWSLPIGMCFTLSGLVLLALAGSFGAVLLAAALVGTGSSVFHPESSRVARMASGGRHGLAQSIFQVGGNFGSSLGPLLAAVIIAPYGKGNVAWFVLAALLAIVVLAQISRWYSAQHRMNKGKPKATIINPLPRNKVVLAVSILLILIFSKYFYMASISSYYTFYLMQKFGLSIQNAQLHLFAFLFAVAAGTVIGGPVGDKIGRKYVIWGSILGVAPFTLILPYASLHWTGVLTVIIGFILASAFSAILVYAQELLPGRIGMVSGLFFGFAFGMGGLGAAVLGLIADHTSIELVYKICAFLPLLGMLTIFLPDNRHKD" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"FTSE-MONOMER" "cell division protein FtsE" ["FtsE"] "MIRFEHVSKAYLGGRQALQGVTFHMQPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDINLISRRSYRMLTLSDGHLHGGVGHE" ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "FTSX-MONOMER" "cell division protein FtsX" ["FtsS", "FtsX"] "MNKRDAINHIRQFGGRLDRFRKSVGGSGDGGRNAPKRAKSSPKPVNRKTNVFNEQVRYAFHGALQDLKSKPFATFLTVMVIAISLTLPSVCYMVYKNVNQAATQYYPSPQITVYLQKTLDDDAAAGVVAQLQAEQGVEKVNYLSREDALGEFRNWSGFGGALDMLEENPLPAVAVVIPKLDFQGTESLNTLRDRITQINGIDEVRMDDSWFARLAALTGLVGRVSAMIGVLMVAAVFLVIGNSVRLSIFARRDSINVQKLIGATDGFILRPFLYGGALLGFSGALLSLILSEILVLRLSSAVAEVAQVFGTKFDINGLSFDECLLLLLVCSMIGWVAAWLATVQHLRHFTPE" ["CCO-CW-BAC-NEG", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "FUC4NACTRANS-MONOMER" "enterobacterial common antigen polymerase" ["RffT", "WzyE"] "MSLLQFSGLFVVWLLCTLFIATLTWFEFRRVRFNFNVFFSLLFLLTFFFGFPLTSVLVFRFDVGVAPPEILLQALLSAGCFYAVYYVTYKTRLRKRVADVPRRPLFTMNRVETNLTWVILMGIALVSVGIFFMHNGFLLFRLNSYSQIFSSEVSGVALKRFFYFFIPAMLVVYFLRQDSKAWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIGIIRGWISLWMLAAAGVLGIVGMFWLALKRYGMNVSGDEAFYTFLYLTRDTFSPWENLALLLQNYDNIDFQGLAPIVRDFYVFIPSWLWPGRPSMVLNSANYFTWEVLNNHSGLAISPTLIGSLVVMGGALFIPLGAIVVGLIIKWFDWLYELGNREPNRYKAAILHSFCFGAIFNMIVLAREGLDSFVSRVVFFIVVFGACLMIAKLLYWLFESAGLIHKRTKSSLRTQVEG" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"FUCISOM-MONOMER" "L-fucose isomerase" ["FucI"] "MKKISLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALLTEKLRHACGAAVECVISDTCIAGMAEAAACEEKFSSQNVGLTITVTPCWCYGSETIDMDPTRPKAIWGFNGTERPGAVYLAAALAAHSQKGIPAFSIYGHDVQDADDTSIPADVEEKLLRFARAGLAVASMKGKSYLSLGGVSMGIAGSIVDHNFFESWLGMKVQAVDMTELRRRIDQKIYDEAELEMALAWADKNFRYGEDENNKQYQRNAEQSRAVLRESLLMAMCIRDMMQGNSKLADIGRVEESLGYNAIAAGFQGQRHWTDQYPNGDTAEAILNSSFDWNGVREPFVVATENDSLNGVAMLMGHQLTGTAQVFADVRTYWSPEAIERVTGHKLDGLAEHGIIHLINSGSAALDGSCKQRDSEGNPTMKPHWEISQQEADACLAATEWCPAIHEYFRGGGYSSRFLTEGGVPFTMTRVNIIKGLGPVLQIAEGWSVELPKDVHDILNKRTNSTWPTTWFAPRLTGKGPFTDVYSVMANWGANHGVLTIGHVGADFITLASMLRIPVCMHNVEETKVYRPSAWAAHGMDIEGQDYRACQNYGPLYKR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MN+2": 1} 1 -"FUCP-MONOMER" "L-fucose:H+ symporter" ["FucP", "FucP fucose MFS transporter"] "MGNTSIQTQSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFRSQTATN" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 1 [] {} 0 +"FUCISOM-MONOMER" "L-fucose isomerase" ["FucI"] "MKKISLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALLTEKLRHACGAAVECVISDTCIAGMAEAAACEEKFSSQNVGLTITVTPCWCYGSETIDMDPTRPKAIWGFNGTERPGAVYLAAALAAHSQKGIPAFSIYGHDVQDADDTSIPADVEEKLLRFARAGLAVASMKGKSYLSLGGVSMGIAGSIVDHNFFESWLGMKVQAVDMTELRRRIDQKIYDEAELEMALAWADKNFRYGEDENNKQYQRNAEQSRAVLRESLLMAMCIRDMMQGNSKLADIGRVEESLGYNAIAAGFQGQRHWTDQYPNGDTAEAILNSSFDWNGVREPFVVATENDSLNGVAMLMGHQLTGTAQVFADVRTYWSPEAIERVTGHKLDGLAEHGIIHLINSGSAALDGSCKQRDSEGNPTMKPHWEISQQEADACLAATEWCPAIHEYFRGGGYSSRFLTEGGVPFTMTRVNIIKGLGPVLQIAEGWSVELPKDVHDILNKRTNSTWPTTWFAPRLTGKGPFTDVYSVMANWGANHGVLTIGHVGADFITLASMLRIPVCMHNVEETKVYRPSAWAAHGMDIEGQDYRACQNYGPLYKR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 +"FUCP-MONOMER" "L-fucose:H+ symporter" ["FucP", "FucP fucose MFS transporter"] "MGNTSIQTQSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFRSQTATN" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 1 [] {} 0 "FUCPALDOL-MONOMER" "L-fuculose-phosphate aldolase" ["Prd", "FucC", "FucA"] "MERNKLARQIIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVFIDGNGKHEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPYATFGTRELSEHVALALKNRKATLLQHHGLIACEVNLEKALWLAHEVEVLAQLYLTTLAITDPVPVLSDEEIAVVLEKFKTYGLRIEE" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 "FUCULOKIN-MONOMER" "L-fuculokinase" ["FucK"] "MKQEVILVLDCGATNVRAIAVNRQGKIVARASTPNASDIAMENNTWHQWSLDAILQRFADCCRQINSELTECHIRGIAVTTFGVDGALVDKQGNLLYPIISWKCPRTAAVMDNIERLISAQRLQAISGVGAFSFNTLYKLVWLKENHPQLLERAHAWLFISSLINHRLTGEFTTDITMAGTSQMLDIQQRDFSPQILQATGIPRRLFPRLVEAGEQIGTLQNSAAAMLGLPVGIPVISAGHDTQFALFGAGAEQNEPVLSSGTWEILMVRSAQVDTSLLSQYAGSTCELDSQAGLYNPGMQWLASGVLEWVRKLFWTAETPWQMLIEEARLIAPGADGVKMQCDLLSCQNAGWQGVTLNTTRGHFYRAALEGLTAQLQRNLQMLEKIGHFKASELLLVGGGSRNTLWNQIKANMLDIPVKVLDDAETTVAGAALFGWYGVGEFNSPEEARAQIHYQYRYFYPQTEPEFIEEV" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"FUM-FE-S" "fumarate reductase iron-sulfur protein" ["FrdB"] "MAEMKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKDFLIATLKPR" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 1 [] {"CPD-6": 1, "CPD-7": 1, "3FE-4S": 1} 1 -"FUM-FLAVO" "fumarate reductase flavoprotein subunit" ["FrdA"] "MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGEADAADKAEAANKKEKANG" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 1 [] {} 1 +"FUM-FE-S" "fumarate reductase [Fe-S] protein" ["FrdB", "fumarate reductase iron-sulfur protein"] "MAEMKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKDFLIATLKPR" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-PM-BAC-NEG"] 1 [] {"CPD-6": 1, "CPD-7": 1, "3FE-4S": 1} 1 +"FUM-FLAVO" "fumarate reductase flavoprotein subunit" ["FrdA"] "MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGEADAADKAEAANKKEKANG" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-PM-BAC-NEG"] 1 [] {} 1 "FUM-MEMB1" "fumarate reductase membrane protein FrdC" ["FrdC"] "MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATIVILFVALYW" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "FUM-MEMB2" "fumarate reductase membrane protein FrdD" ["FrdD"] "MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "FUMA-MONOMER" "fumarase A" ["FumA"] "MSNKPFHYQAPFPLKKDDTEYYLLTSEHVSVSEFEGQEILKVAPEALTLLARQAFHDASFMLRPAHQQQVADILRDPEASENDKYVALQFLRNSDIAAKGVLPTCQDTGTAIIVGKKGQRVWTGGGDEAALARGVYNTYIEDNLRYSQNAPLDMYKEVNTGTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALLTPGKLKNYLVEKMRTLGTAACPPYHIAFVIGGTSAETNLKTVKLASAKYYDELPTEGNEHGQAFRDVELEKELLIEAQNLGLGAQFGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKAKINRQGIWIEKLEHNPGKYIPEELRKAGEGEAVRVDLNRPMKEILAQLSQYPVSTRLSLNGTIIVGRDIAHAKLKERMDNGEGLPQYIKDHPIYYAGPAKTPEGYASGSLGPTTAGRMDSYVDQLQAQGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKSLECVEYPELGMEAIWKIEVEDFPAFILVDDKGNDFFQQIQLTQCTRCVK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"CPD-7": 1} 1 @@ -1796,8 +1796,8 @@ "G495-MONOMER" "6-phospho-β-glucosidase A" ["YqfC", "BglD", "BglA"] "MIVKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVLPGKYYPNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVKAARRINPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGLRYALCELYERYQRPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIASNGEKL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6081-MONOMER" "DUF2502 domain-containing protein YaaX" ["YaaX"] "MKKMQSIVLALSLVLVAPMAAQAAEITLVPSVKLQIGDRDNRGYYWDGGHWRDHGWWKQHYEWRGNRWHLHGPPPPPRHHKKAPHDHHGGHGPGKHHR" [] [] 0 [] {} 0 "G6082-MONOMER" "putative enzyme-specific chaperone YaaW" ["YaaW"] "MNVNYLNDSDLDFLQHCSEEQLANFARLLTHNEKGKTRLSSVLMRNELFKSMEGHPEQHRRNWQLIAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRNTWKKMDEEHKQEFLHAVDARVNELEELLPLLMKDKLLAKGVSHLLSSQLTRILRTHAAMSVLGHGLLRGAGLGGPVGAALNGVKAVSGSAYRVTIPAVLQIACLRRMVSATQV" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6083-MONOMER" "IS186/IS421 transposase" ["InsL1"] "MNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLLRLGLAYGPGGMSLREVTAWAQLHDVATLSDVALLKRLRNAADWFGILAAQTLAVRAAVTGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELTDSRDAERLDRFAQTADEIRIADRGFGSRPECIRSLAFGEADYIVRVHWRGLRWLTAEGMRFDMMGFLRGLDCGKNGETTVMIGNSGNKKAGAPFPARLIAVSLPPEKALISKTRLLSENRRKGRVVQAETLEAAGHVLLLTSLPEDEYSAEQVADCYRLRWQIELAFKRLKSLLHLDALRAKEPELAKAWIFANLLAAFLIDDIIQPSLDFPPRSAGSEKKN" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6086-MONOMER" "IS1 protein InsA" ["InsA1"] "MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTILRHLKNSGRSR" [] [] 0 [] {} 0 +"G6083-MONOMER" "IS186/IS421 family transposase" ["InsL1"] "MNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLLRLGLAYGPGGMSLREVTAWAQLHDVATLSDVALLKRLRNAADWFGILAAQTLAVRAAVTGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELTDSRDAERLDRFAQTADEIRIADRGFGSRPECIRSLAFGEADYIVRVHWRGLRWLTAEGMRFDMMGFLRGLDCGKNGETTVMIGNSGNKKAGAPFPARLIAVSLPPEKALISKTRLLSENRRKGRVVQAETLEAAGHVLLLTSLPEDEYSAEQVADCYRLRWQIELAFKRLKSLLHLDALRAKEPELAKAWIFANLLAAFLIDDIIQPSLDFPPRSAGSEKKN" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"G6086-MONOMER" "IS1 family protein InsA" ["InsA1"] "MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTILRHLKNSGRSR" [] [] 0 [] {} 0 "G6087-MONOMER" "DUF2575 domain-containing protein YaaY" ["YaaY"] "MCRHSLRSDGAGFYQLAGCEYSFSAIKIAAGGQFLPVICAMAMKSHFFLISVLNRRLTLTAVQGILGRFSLF" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6088-MONOMER" "DNA-binding transcriptional activator CaiF" ["CaiF"] "MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6093-MONOMER" "outer membrane protein assembly factor BamA" ["YzzN", "YzzY", "EcfK", "YaeT"] "MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSPDQVDVVYKVKERNTGSFNFGIGYGTESGVSFQAGVQQDNWLGTGYAVGINGTKNDYQTYAELSVTNPYFTVDGVSLGGRLFYNDFQADDADLSDYTNKSYGTDVTLGFPINEYNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGEHPSTSDQDNSFKTDDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSDNEYYKVTLDTATYVPIDDDHKWVVLGRTRWGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYFPHQASNYDPDYDYECATQDGAKDLCKSDDAVGGNAMAVASLEFITPTPFISDKYANSVRTSFFWDMGTVWDTNWDSSQYSGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIGKTW" ["CCO-MEMBRANE", "CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 @@ -1806,8 +1806,8 @@ "G6097-MONOMER" "modulator of Rho-dependent transcription termination" ["YaeO", "Rof"] "MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKNVEYLVVEAAGETRELRLDKITSFSHPEIGTVVVSES" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6098-MONOMER" "uncharacterized protein YaeQ" ["YaeQ"] "MALKATIYKATVNVADLDRNQFLDASLTLARHPSETQERMMLRLLAWLKYADERLQFTRGLCADDEPEAWLRNDHLGIDLWIELGLPDERRIKKACTQAAEVALFTYNSRAAQIWWQQNQSKCVQFANLSVWYLDDEQLAKVSAFADRTMTLQATIQDGVIWLSDDKNNLEVNLTAWQQPS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6100-MONOMER" "putative S-adenosyl-L-methionine-dependent methyltransferase" ["YafS"] "MKPARVPQTVVAPDCWGDLPWGKLYRKALERQLNPWFTKMYGFHLLKIGNLSAEINCEACAVSHQVNVSAQGMPVQVQADPLHLPFADKSVDVCLLAHTLPWCTDPHRLLREADRVLIDDGWLVISGFNPISFMGLRKLVPVLRKTSPYNSRMFTLMRQLDWLSLLNFEVLHASRFHVLPWNKHGGKLLNAHIPALGCLQLIVARKRTIPLTLNPMKQSKNKPRIRQAVGATRQCRKPQA" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6101-MONOMER" "lipoprotein YafT" ["YafT"] "MNSKKLCCICVLFSLLAGCASESSIDEKKKKAQVTQSNINKNTPQQLTDKDLFGNETTLAVSEEDIQAALDGDEFRVPLNSPVILVQSGNRAPETIMQEEMRKYYTVSTFSGIPDRQKPLTCNKNKDKNENEDVASAENMNWMQALRFVAAKGHQKAIIVYQDMLQTGKYDSALKSTVWSDYKNDKLTDAISLRYLVRFTLVDVATGEWATWSPVNYEYKVLPPLPDKNEASTTDMTEQQIMQLKQKTYKAMVKDLVNRYQ" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 0 -"G6102-MONOMER" "putative inner membrane protein" ["YafU"] "MSSERDLVNFLGDFSMDVAKAVIAGGVATAIGSLASFACVSFGFPVILVGGAILLTGIVCTVVLNEIDAQCHLSEKLKYAIRDGLKRQQELDKWKRENMTPFMYVLNTPPVI" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6101-MONOMER" "lipoprotein YafT" ["YafT"] "MNSKKLCCICVLFSLLAGCASESSIDEKKKKAQVTQSNINKNTPQQLTDKDLFGNETTLAVSEEDIQAALDGDEFRVPLNSPVILVQSGNRAPETIMQEEMRKYYTVSTFSGIPDRQKPLTCNKNKDKNENEDVASAENMNWMQALRFVAAKGHQKAIIVYQDMLQTGKYDSALKSTVWSDYKNDKLTDAISLRYLVRFTLVDVATGEWATWSPVNYEYKVLPPLPDKNEASTTDMTEQQIMQLKQKTYKAMVKDLVNRYQ" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 +"G6102-MONOMER" "putative inner membrane protein" ["YafU"] "MSSERDLVNFLGDFSMDVAKAVIAGGVATAIGSLASFACVSFGFPVILVGGAILLTGIVCTVVLNEIDAQCHLSEKLKYAIRDGLKRQQELDKWKRENMTPFMYVLNTPPVI" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6103-MONOMER" "2-oxoglutaramate amidase" ["YafV"] "MPGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEMFTSGFAMEAAASSLAQDDVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTVHFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLALYVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIATADAHQATRIDAELSMAALREYREKFPAWQDADEFRLW" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6104-MONOMER" "periplasmic chaperone, inhibitor of vertebrate C-type lysozyme" ["Ivy", "YkfE"] "MGRISSGGMMFKAITTVAALVIATSAMAQDDLTISSLAKGETTKAAFNQMVQGHKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEKSNQMTGLFSTIDEKTSQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "G6106-MONOMER" "D-sedoheptulose 7-phosphate isomerase" ["YafI", "TfrA", "GmhA", "LpcA"] "MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFSRYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPHFGYADRIQEIHIKVIHILIQLIEKEMVK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 @@ -1815,9 +1815,9 @@ "G6108-MONOMER" "peptidoglycan meso-diaminopimelic acid protein amidase A" ["DpaA", "YafK", "LdtF"] "MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQLKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTGALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVNGRYVVSKPLSHEVVQPQLASNYTLPEAK" [] [] 0 [] {} 0 "G6109-MONOMER" "ribosome-dependent mRNA interferase toxin YafQ" ["YafQ", "toxin of the YafQ-DinJ toxin-antitoxin system"] "MIQRDIEYSGQYSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLRFERTGTHAALFG" [] [] 0 [] {} 1 "G6110-MONOMER" "antitoxin/DNA-binding transcriptional repressor DinJ" ["DinJ", "SosA", "DinJ antitoxin of YafQ-DinJ toxin-antitoxin system / DNA-binding transcriptional repressor"] "MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQSIKNSEAGIDVHKAKDADDLFDKLGI" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G6111-MONOMER" "NlpC/P60 family protein YafL" ["YafL", "C40 family non-peptidase homologue"] "MSLPSIPSFVLSGLLLICLPFSSFASATTSHISFSYAARQRMQNRARLLKQYQTHLKKQASYIVEGNAESKRALRQHNREQIKQHPEWFPAPLKASDRRWQALAENNHFLSSDHLHNITEVAIHRLEQQLGKPYVWGGTRPDKGFDCSGLVFYAYNKILEAKLPRTANEMYHYRRATIVANNDLRRGDLLFFHIHSREIADHMGVYLGDGQFIESPRTGETIRISRLAEPFWQDHFLGARRILTEETIL" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"G6111-MONOMER" "NlpC/P60 family protein YafL" ["YafL", "C40 family non-peptidase homologue"] "MSLPSIPSFVLSGLLLICLPFSSFASATTSHISFSYAARQRMQNRARLLKQYQTHLKKQASYIVEGNAESKRALRQHNREQIKQHPEWFPAPLKASDRRWQALAENNHFLSSDHLHNITEVAIHRLEQQLGKPYVWGGTRPDKGFDCSGLVFYAYNKILEAKLPRTANEMYHYRRATIVANNDLRRGDLLFFHIHSREIADHMGVYLGDGQFIESPRTGETIRISRLAEPFWQDHFLGARRILTEETIL" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6112-MONOMER" "REP-associated tyrosine transposase" ["RayT", "YafM", "TnpAREP"] "MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRHAIIKVKRDRPFEINAWVVLPEHMHCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHAIRNTKDYRHHVDYIYINPVKHGWVKQVSDWPFSTFHRDVARGLYPIDWAGDVTDFSAGERIIS" [] [] 0 [] {} 0 -"G6113-MONOMER" "flagellar system protein, promoterless fragment" ["FhiA", "LfhA"] "MLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"G6113-MONOMER" "flagellar system protein, promoterless fragment" ["FhiA", "LfhA"] "MLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM" [] ["CCO-MEMBRANE"] 0 [] {} 0 "G6114-MONOMER" "flagellar system protein, promoterless fragment" ["MbhA", "LafU"] "MSKSERESIIAALHGQSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMVLTKSASDTLYQYFGQHGDKVVQPLVQKLDKQQVLSQRTR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6115-MONOMER" "DNA polymerase IV" ["DinB", "DinP", "Pol IV"] "MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "G6116-MONOMER" "antitoxin YafN" ["YafN", "antitoxin of the YafO-YafN toxin-antitoxin system"] "MHRILAEKSVNITELRKNPAKYFIDQPVAVLSNNRPAGYLLSASAFEALMDMLAEQEEKKPIKARFRPSAARLEEITRRAEQYLNDMTDDDFNDFKE" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -1830,7 +1830,7 @@ "G6123-MONOMER" "CP4-6 prophage; protein YafX" ["YafX"] "MTTQTQHDLAPANQPEFELTVTPVPDEQRIDFWPQYFGAIPQWLLLEPHIFAWMDRFCEGYSGGIWSFYTLSNGGAFMSPEPDNDETWRLFNCLNGNDAQMSAEAAGIAVCLIAYSHHACRTECDAMTAHYYRLREYAMQHPEAHAILRIID" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6124-MONOMER" "CP4-6 prophage; protein YkfF" ["YkfF"] "MTQSVLLPPGPFTRRQAQAVTTTYSNITLEDDQGSHFRLVVRDTEGRMVWRAWNFEPDAGEGLNRYIRTSGIRTDTATR" [] [] 0 [] {} 0 "G6125-MONOMER" "CP4-6 prophage; protein YkfB" ["YkfB"] "MTILSLSRFMLAGVLLASFNASAIPGFWQQGYGQGNTEYSVTEASGKTFTINCTGNPDQNGFYQHSVFLTLADDKMVSSHDDDTTITVVMDHQQYIIPSSLGWRNGDNAWFDFISNISEAGQFDVYVNDHKAGTFTADRKNAEKVLSTLGDCSND" [] [] 0 [] {} 0 -"G6126-MONOMER" "CP4-6 prophage; inner membrane lipoprotein YafY" ["YafY"] "MKRKTLPLLALVATTLFLIACDDRSDDLKAISKFKDLTPPRFSDVVSHQDDVSEEWSQVDYLSGPTLQVLRTRQSPDGCEDGSYYYLVDMQEKTVQPLMNALCIADNIKLEYQEVTDPYTKEKYFEYAHDGKLMGQLLIPSNPDNQE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6126-MONOMER" "CP4-6 prophage; inner membrane lipoprotein YafY" ["YafY"] "MKRKTLPLLALVATTLFLIACDDRSDDLKAISKFKDLTPPRFSDVVSHQDDVSEEWSQVDYLSGPTLQVLRTRQSPDGCEDGSYYYLVDMQEKTVQPLMNALCIADNIKLEYQEVTDPYTKEKYFEYAHDGKLMGQLLIPSNPDNQE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6127-MONOMER" "CP4-6 prophage; DUF932 domain-containing protein YafZ" ["YafZ"] "MTRLASRFGAANLIRRDRPLTREELFRVVPSVFSEDKHESRSERYTYIPTISLLDSLQREGFQPFFACQTRVRDPGRREHTKHMLRLRREGQITGKQVPEIILLNSHDGTSSYQMLPGLFRAVCQNGLVCGESFGEVRVPHKGDVVSQVIEGAYEVLGIFDRVEEKRDAMQSLLLPPPAQQALAKAALTYRFGEDHQPVTESQILSPRRWQDESNDLWTTYQRIQENLIKGGLSGRNAKGGRSHTRAVRGIDGDVKLNRALWVMAEALLTQLQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6128-MONOMER" "CP4-6 prophage; putative GTP-binding protein YkfA" ["YkfA"] "MNNSEGLKSFQQSLADLPQWVSERLLQQINQLTNYEPVIGIMGKTGVGKSSLCNALFAGDISPVSDVAACTREPLRFRLQVGDRYITLMDLPGVGESGARDTEYAALYREQLPRLDLVLWLIKADDRALTVDEHFYHQVIGEVYRHKVLFVISQSDKAEPTSGGGQLSTAQKQNISRKICLLHELFQPVHPVCAVSVRLQWGLKVMAERMIKCLPREATSPVVSQLHPSFRTTVVREQARSDFGETVGAVLDSISAFPLIPAPVRAVIQAVRTTVVSVARAVWDFFF" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6129-MONOMER" "CP4-6 prophage; putative transcriptional regulator PerR" ["PerR"] "MKLLAKAPLNLLRAFEAAGRTGAFALAASELELSPSAISHAIRKLENLLDVRLFQRSTREITLTKEGEILLEHIQRGFNELQQGLALVTADESRPLRLHTAPSFAHQWLLPRLGKFIRENPSIDLRLSASTEYARFEQDDFDLDIVYGEPRPSPYEKIPLAVEELTPLCSPQLAERLKKPEDLYALTLIQCDVQLYQWKGWFEANKMTPPNNYGLRFDRSFMAIAAAVDGLGVVLESKLLAEREIASGKLVCPLVNSTSEIHYIGHYLVFPQHQHMHSALDVFKTWLLNELNLGKIR" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -1840,7 +1840,7 @@ "G6137-MONOMER" "CP4-6 prophage; ABC transporter membrane protein AfuB" [] "MPNR*IAR*SLTQPARRFPAYHYAHPAAAAAPGDPLGADLQLCARHYHRQRHCVPRHAGYPRSDGLHPQPRGRWRIRCSDCLRFHSDRGDAGDYFHL*LADR*ITYLPFKSQKPG" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6138-MONOMER" "IS1 protein InsB" ["InsB2"] "MPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVEQHDKVIGHYLNIKHYQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6139-MONOMER" "IS1 protein InsA" ["InsA2"] "MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSGRSR" [] [] 0 [] {} 0 -"G6140-MONOMER" "CP4-6 prophage; putative 2-dehydro-3-deoxygluconate aldolase" ["YagE"] "MPQSALFTGIIPPVSTIFTADGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGIKDTIDSVAHLRSMIHTVKGAHPHFTVLCGYDDHLFNTLLLGGDGAISASGNFAPQVSVNLLKAWRDGDVAKAAGYHQTLLQIPQMYQLDTPFVNVIKEAIVLCGRPVSTHVLPPASPLDEPRKAQLKTLLQQLKLC" [] ["CCO-CYTOSOL"] 0 [] {} 1 +"G6140-MONOMER" "CP4-6 prophage; 2-dehydro-3-deoxygluconate aldolase" ["YagE"] "MPQSALFTGIIPPVSTIFTADGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGIKDTIDSVAHLRSMIHTVKGAHPHFTVLCGYDDHLFNTLLLGGDGAISASGNFAPQVSVNLLKAWRDGDVAKAAGYHQTLLQIPQMYQLDTPFVNVIKEAIVLCGRPVSTHVLPPASPLDEPRKAQLKTLLQQLKLC" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6141-MONOMER" "CP4-6 prophage; D-xylonate dehydratase" ["YagF"] "MTIEKIFTPQDDAFYAVITHAAGPQGALPLTPQMLMESPSGNLFGMTQNAGMGWDANKLTGKEVLIIGTQGGIRAGDGRPIALGYHTGHWEIGMQMQAAAKEITRNGGIPFAAFVSDPCDGRSQGTHGMFDSLPYRNDAAIVFRRLIRSLPTRRAVIGVATCDKGLPATMIALAAMHDLPTILVPGGATLPPTVGEDAGKVQTIGARFANHELSLQEAAELGCRACASPGGGCQFLGTAGTSQVVAEALGLALPHSALAPSGQAVWLEIARQSARAVSELDSRGITTRDILSDKAIENAMVIHAAFGGSTNLLLHIPAIAHAAGCTIPDVEHWTRINRKVPRLVSVLPNGPDYHPTVRAFLAGGVPEVMLHLRDLGLLHLDAMTVTGQTVGENLEWWQASERRARFRQCLREQDGVEPDDVILPPEKAKAKGLTSTVCFPTGNIAPEGSVIKATAIDPSVVGEDGVYHHTGRVRVFVSEAQAIKAIKREEIVQGDIMVVIGGGPSGTGMEETYQLTSALKHISWGKTVSLITDARFSGVSTGACFGHVSPEALAGGPIGKLRDNDIIEIAVDRLTLTGSVNFIGTADNPLTPEEGARELARRQTHPDLHAHDFLPDDTRLWAALQSVSGGTWKGCIYDTDKIIEVINAGKKALGI" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6143-MONOMER" "CP4-6 prophage; putative xylosidase/arabinosidase" ["YagH"] "MEITNPILTGFNPDPSLCRQGEDYYIATSTFEWFPGVRIYHSRDLKNWSLVSTPLDRVSMLDMKGNPDSGGIWAPCLSYADGKFWLLYTDVKIVDSPWKNGRNFLVTAPSIEGPWSEPIPMGNGGFDPSLFHDDDGRKYYIYRPWGPRHHSNPHNTIVLQAFDPQTGTLSPERKTLFTGTPLCYTEGAHLYRHAGWYYLMAAEGGTSYEHAVVVLRSKNIDGPYELHPDVTMMTSWHLPENPLQKSGHGSLLQTHTGEWYMAYLTSRPLRLPGVPLLASGGRGYCPLGRETGIARIEWRDGWPYVEGGKHAQLTVKGPQVAEQPAAVPGNWRDDFDASSLDPELQTLRIPFDDTLGSLTARPGFLRLYGNDSLNSTFTQSTVARRWQHFAFRAETRMEFSPVHFQQSAGLTCYYNSKNWSYCFVDYEEGQGRTIKVIQLDHNVPSWPLHEQPIPVPEHAESVWLRVDVDTLVYRYSYSFDGETWHTVPVTYEAWKLSDDYIGGRGFFTGAFVGLHCEDISGDGCYADFDYFTYEPV" [] [] 0 [] {} 0 "G6144-MONOMER" "CP4-6 prophage; DNA-binding transcriptional repressor XynR" ["XynR", "YagI"] "MPIIQSVERALQILDLFNEQATELKITDISKLMGLSKSTLHSLLKTLQLHGYIDQNPENGKYRLGMKLVERGHFVVGSIDIRQKAKGWLTELSRRTGQTTHLGILDGREGVYIEKIEGKLAAIAYSRIGRRLPVHATAIGKVLIAWLGEAELNALLEGYQYTTFTPATLASREALMSALAQTREQGYALDSEENEQGVRCVAVPVWNHESRVIAALSLSTLTSRVDDAELANFREQLQQAGLALSRALGYPA" [] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -1855,7 +1855,7 @@ "G6155-MONOMER" "aldehyde dehydrogenase, molybdenum cofactor-binding subunit" ["YagR", "PaoC"] "MKFDKPAGENPIDQLKVVGRPHDRIDGPLKTTGTARYAYEWHEEAPNAAYGYIVGSAIAKGRLTALDTDAAQKAPGVLAVITASNAGALGKGDKNTARLLGGPTIEHYHQAIALVVAETFEQARAAASLVQAHYRRNKGAYSLADEKQAVNQPPEDTPDKNVGDFDGAFTSAAVKIDATYTTPDQSHMAMEPHASMAVWDGNKLTLWTSNQMIDWCRTDLAKTLKVPVENVRIISPYIGGGFGGKLFLRSDALLAALAARAVKRPVKVMLPRPSIPNNTTHRPATLQHLRIGADQSGKITAISHESWSGNLPGGTPETAVQQSELLYAGANRHTGLRLATLDLPEGNAMRAPGEAPGLMALEIAIDELAEKAGIDPVEFRILNDTQVDPADPTRCFSRRQLIECLRTGADKFGWKQRNATPGQVRDGEWLVGHGVAAGFRNNLLEKSGARVHLEQNGTVTVETDMTDIGTGSYTILAQTAAEMLGVPLEQVAVHLGDSSFPVSAGSGGQWGANTSTSGVYAACMKLREMIASAVGFDPEQSQFADGKITNGTRSATLHEATAGGRLTAEESIEFGTLSKEYQQSTFAGHFVEVGVHSATGEVRVRRMLAVCAAGRILNPKTARSQVIGAMTMGMGAALMEELAVDDRLGYFVNHDMAGYEVPVHADIPKQEVIFLDDTDPISSPMKAKGVGELGLCGVSAAIANAVYNATGIRVRDYPITLDKLLDKLPDVV" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 1 "G6156-MONOMER" "aldehyde dehydrogenase, FAD-binding Fe-S subunit" ["YagS", "PaoB"] "MKAFTYERVNTPAEAALSAQRVPGAKFIAGGTNLLDLMKLEIETPTHLIDVNGLGLDKIEVTDAGGLRIGALVRNTDLAAHERVRRDYAVLSRALLAGASGQLRNQATTAGNLLQRTRCPYFYDTNQPCNKRLPGSGCAALEGFSRQHAVVGVSEACIATHPSDMAVAMRLLDAVVETITPEGKTRSITLADFYHPPGKTPHIETALLPGELIVAVTLPPPLGGKHIYRKVRDRASYAFALVSVAAIIQPDGSGRVALGGVAHKPWRIEAADAQLSQGAQAVYDTLFASAHPTAENTFKLLLAKRTLASVLAEARAQA" [] ["CCO-PERI-BAC", "CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 1 "G6157-MONOMER" "aldehyde dehydrogenase, Fe-S subunit" ["YagT", "PaoA"] "MSNQGEYPEDNRVGKHEPHDLSLTRRDLIKVSAATAATAVVYPHSTLAASVPAATPAPEIMPLTLKVNGKTEQLEVDTRTTLLDTLRENLHLIGTKKGCDHGQCGACTVLVNGRRLNACLTLAVMHQGAEITTIEGLGSPDNLHPMQAAFIKHDGFQCGYCTSGQICSSVAVLKEIQDGIPSHVTVDLVSAPETTADEIRERMSGNICRCGAYANILAAIEDAAGEIKS" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {"CPD-6": 2} 1 -"G6158-MONOMER" "DUF1440 domain-containing inner membrane protein YagU" ["YagU", "inner membrane protein that contributes to acid resistance"] "MNIFEQTPPNRRRYGLAAFIGLIAGVVSAFVKWGAEVPLPPRSPVDMFNAACGPESLIRAAGQIDCSRNFLNPPYIFLRDWLGLTDPNAAVYTFAGHVFNWVGVTHIIFSIVFAVGYCVVAEVFPKIKLWQGLLAGALAQLFVHMISFPLMGLTPPLFDLPWYENVSEIFGHLVWFWSIEIIRRDLRNRITHEPDPEIPLGSNR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6158-MONOMER" "DUF1440 domain-containing inner membrane protein YagU" ["YagU", "inner membrane protein that contributes to acid resistance"] "MNIFEQTPPNRRRYGLAAFIGLIAGVVSAFVKWGAEVPLPPRSPVDMFNAACGPESLIRAAGQIDCSRNFLNPPYIFLRDWLGLTDPNAAVYTFAGHVFNWVGVTHIIFSIVFAVGYCVVAEVFPKIKLWQGLLAGALAQLFVHMISFPLMGLTPPLFDLPWYENVSEIFGHLVWFWSIEIIRRDLRNRITHEPDPEIPLGSNR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6159-MONOMER" "putative metal-chelating domain-containing protein YkgJ" ["YkgJ", "predicted ferredoxin"] "MSNLNPCMTCGACCAFFRVSFYWAEADDAGGTIPARLTEQISPFHRCMSGTNQKNPRCIALAGTPGKNACCTIYKNRSSTCREFAMSGENGVVNEACNRARAKYGLTPL" [] [] 0 [] {} 0 "G6160-MONOMER" "putative fimbrial chaperone EcpE" ["MatF", "YagV", "EcpE", "E. coli common pilus chaperone"] "MFRRRGVTLTKALLTAVCMLAAPLTQAISVGNLTFSLPSETDFVSKRVVNNNKSARIYRIAISAIDSPGSSELRTRPVDGELLFAPRQLALQAGESEYFKFYYHGPRDNRERYYRVSFREVPTRNHTRRSPTGGVVSTEPVVVMDTILVVRPRQVQFKWSFDKVTGTVSNTGNTWFKLLIKPGCDSTEEEGDAWYLRPGDVVHQPELRQPGNHYLVYNDKFIKISDSCPAKPPSAD" [] ["CCO-PERI-BAC"] 0 [] {} 0 "G6161-MONOMER" "fimbrial adhesin EcpD" ["MatE", "YagW", "EcpD"] "MRVNLLITMIIFALIWPVTALRAAVSKTTWADAPAREFVFVENNSDDNFFVTPGGALDPRLTGANRWTGLKYTGSGTIYQQSLGYIDNGYNTGLYTNWKFDMWLENSPVSSPLTGLRCINWYAGCNMTTSLILPQTTDASGFYGATVTSGGAKWMHGMLSDAFYQYMQQMPVGSSFTMTINACQTSVNYDASSGARCKDQASGNWYVRNVTHTKAANLRLINTHSLAEVFINSDGVPTLGEGNADCRTQTIGSRSGLSCKMVNYTLQTNGLSNTSIHIFPAIANSSLASAVGAYDMQFSLNGSSWKPVSNTAYYYTFNEMKSADSIYVFFSSNFFKQMVNLGISDINTKDLFNFRFQNTTSPESGWYEFSTSNTLIIKPRDFSISIISDEYTQTPSREGYVGSGESALDFGYIVTTSGKTAADEVLIKVTGPAQVIGGRSYCVFSSDDGKAKVPFPATLSFITRNGATKTYDAGCDDSWRDMTDALWLTTPWTDISGEVGQMDKTTVKFSIPMDNAISLRTVDDNGWFGEVSASGEIHVQATWRNIN" [] ["CCO-PILUS"] 0 [] {} 0 @@ -1866,20 +1866,20 @@ "G6166-MONOMER" "uncharacterized protein YkgL" ["YkgL"] "MQAAPQREETEWRVQSKRGLMPAYRGEAGQQVNIKIMEYSERNVRQLASNEQEEYIPRKINVGVINTPTLIRSDY" [] [] 0 [] {} 0 "G6167-MONOMER" "50S ribosomal subunit protein L31B" ["YkgM"] "MKPNIHPEYRTVVFHDTSVDEYFKIGSTIKTDREIELDGVTYPYVTIDVSSKSHPFYTGKLRTVASEGNVARFTQRFGRFVSTKKGA" ["CCO-CYTOSOL"] ["CCO-RIBOSOME", "CCO-CYTOSOL"] 0 [] {} 0 "G6170-MONOMER" "putative DNA-binding transcriptional regulator YkgA" ["YkgA"] "MIRQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFDSQQSFSREFKKLFGCSPREYRHRDYWDLANIFPSFLIRQQQKTECRLINFPETPIFGNSFKYDIEVSNKSPDEEVKLRRHHLARCMKNFKTDIYFVSTFEPSTKSVDLLTVETFAGTVCEYADMPKEWTTTRGLYDPTHVIWTQA" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6171-MONOMER" "DUF417 domain-containing inner membrane protein RclC" ["RclC", "YkgB", "reactive chlorine species resistance protein C"] "MEKYLHLLSRGDKIGLTLIRLSIAIVFMWIGLLKFVPYEADSITPFVANSPLMSFFYEHPEDYKQYLTHEGEYKPEARAWQTANNTYGFSNGLGVVEVIIALLVLANPVNRWLGLLGGLMAFTTPLVTLSFLITTPEAWVPALGDAHHGFPYLSGAGRLVLKDTLMLAGAVMIMADSAREILKQRSNESSSTLKTEY" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6173-MONOMER" "DUF1471 domain-containing protein RclB" ["RclB", "YkgI", "putative protein, hypochlorite stress response"] "MFKKSVLFATLLSGVMAFSTNADDKIILKHISVSSVSASPTVLEDTIADIARKYNASSWKVTSMRIDNNSTATAVLYK" [] ["CCO-PERI-BAC", "CCO-CYTOSOL"] 0 [] {} 0 +"G6171-MONOMER" "DUF417 domain-containing inner membrane protein RclC" ["RclC", "YkgB", "reactive chlorine species resistance protein C"] "MEKYLHLLSRGDKIGLTLIRLSIAIVFMWIGLLKFVPYEADSITPFVANSPLMSFFYEHPEDYKQYLTHEGEYKPEARAWQTANNTYGFSNGLGVVEVIIALLVLANPVNRWLGLLGGLMAFTTPLVTLSFLITTPEAWVPALGDAHHGFPYLSGAGRLVLKDTLMLAGAVMIMADSAREILKQRSNESSSTLKTEY" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6173-MONOMER" "hypochlorite stress response protein RclB" ["RclB", "YkgI", "putative protein, DUF1471 domain-containing"] "MFKKSVLFATLLSGVMAFSTNADDKIILKHISVSSVSASPTVLEDTIADIARKYNASSWKVTSMRIDNNSTATAVLYK" [] ["CCO-PERI-BAC", "CCO-CYTOSOL"] 0 [] {} 0 "G6174-MONOMER" "cupric reductase RclA" ["RclA", "YkgC", "putative oxidoreductase with FAD/NAD(P)-binding domain and dimerization domain; hypochlorite stress response", "putative pyridine nucleotide-disulfide oxidoreductase RclA", "flavin-dependent oxidoreductase"] "MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKRLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRMLGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFSLVK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6175-MONOMER" "DNA-binding transcriptional activator RclR" ["RclR", "YkgD"] "MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6176-MONOMER" "putative lactate utilization oxidoreductase YkgE" ["YkgE"] "MNVNFFVTCIGDALKSRMARDSVLLLEKLGCRVNFPEKQGCCGQPAINSGYIKEAIPGMKNLIAALEDNDDPIISPAGSCTYAVKSYPTYLADEPEWASRAAKVAARMQDLTSFIVNKLGVVDVGASLQGRAVYHPSCSLARKLGVKDEPLTLLKNVRGLELLTFAEQDTCCGFGGTFSVKMAEISGEMVKEKVAHLMEVRPEYLIGADVSCLLNISGRLQREGQKVKVMHIAEVLMSR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6177-MONOMER" "putative amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain" ["YkgF"] "MSIKTSNTDFKTRIRQQIEDPIMRKAVANAQQRIGANRQKMVDELGHWEEWRDRAAQIRDHVLSNLDAYLYQLSEKVTQNGGHVYFARTKEDATRYILQVAQRKNARKVVKSKSMVTEEIGVNHVLQDAGIQVIETDLGEYILQLDQDPPSHVVVPAIHKDRHQIRRVLHERLGYEGPETPEAMTLFIRQKIREDFLSAEIGITGCNFAVAETGSVCLVTNEGNARMCTTLPKTHIAVMGMERIAPTFAEVDVLITMLARSAVGARLTGYNTWLTGPREAGHVDGPEEFHLVIVDNGRSEVLASEFRDVLRCIRCGACMNTCPAYRHIGGHGYGSIYPGPIGAVISPLLGGYKDFKDLPYACSLCTACDNVCPVRIPLSKLILRHRRVMAEKGITAKAEQRAIKMFAYANSHPGLWKVGMMAGAHAASWFINGGKTPLKFGAISDWMEARDLPEADGESFRSWFKKHQAQEKKNG" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 2} 0 "G6178-MONOMER" "DUF162 domain-containing lactate utilization protein YkgG" ["YkgG"] "MDNRGEFLNNVAQALGRPLRLEPQAEDAPLNNYANERLTQLNQQQRCDAFIQFASDVMLTRCELTSEAKAAEAAIRLCKELGDQSVVISGDTRLEELGISERLQQECNAVVWDPAKGAENISQAEQAKVGVVYAEYGLTESGGVVLFSAAERGRSLSLLPEYSLFILRKSTILPRVAQLAEKLHQKAQAGERMPSCINIISGPSSTADIELIKVVGVHGPVKAVYLIIEDC" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6180-MONOMER" "uncharacterized protein YkgH" ["YkgH"] "MREQIKQDIDLIEILFYLKKKIRVILFIMAICMAMVLLFLYINKDNIKVIYSLKINQTTPGILVSCDSNNNFACQTTMTEDVIQRITTFFHTSPDVKNREIRLEWSGDKRALPTAEEEISRVQASIIKWYASEYHNGRQVLDEIQTPSAINSELYTKMIYLTRNWSLYPNGDGCVTISSPEIKNKYPAAICLALGFFLSIVISVMFCLVKKMVDEYQQNSGQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6180-MONOMER" "uncharacterized protein YkgH" ["YkgH"] "MREQIKQDIDLIEILFYLKKKIRVILFIMAICMAMVLLFLYINKDNIKVIYSLKINQTTPGILVSCDSNNNFACQTTMTEDVIQRITTFFHTSPDVKNREIRLEWSGDKRALPTAEEEISRVQASIIKWYASEYHNGRQVLDEIQTPSAINSELYTKMIYLTRNWSLYPNGDGCVTISSPEIKNKYPAAICLALGFFLSIVISVMFCLVKKMVDEYQQNSGQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6181-MONOMER" "putative LysR-type DNA-binding transcriptional regulator YahB" ["YahB"] "MNSIFTEENLLAFTTAARFGSFSKAAEELGLTTSAISYTIKRMETGLDVVLFTRSTRSIELTESGRYFFRKATDLLNDFYAIKRRIDTISQGIEARVRICINQLLYTPKHTARLLQVLKKQFPTCQITVTTEVYNGVWDAIINNQANIAIGAPDTLLDGGGIDYTEIGAIRWAFAIAPDHPLAFVPEPIAESQLRLYPNIMVEDTAHTINKKVGWLLHGQESILVPDFNTKCQCQILGEGIGFLPDYMVREAMTQSLLVTRQIHNPRQDSRMLLATQHSATGQVTQWIKKQFAPNGILTGIYQDLLHREN" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6182-MONOMER" "uncharacterized protein YahC" ["YahC"] "MNGLTATGVTVGICAGLWQLVSSHVGLSQGWELLGTIGFVAFCSFYAAGGGKSGFIRSLAVNYSGMVWAFFAALTAGWLASVSGLSAFWASVITTVPFSAVVVWQGRFWLLSFIPGGFLGMTLFFASGMNWTVTLLGFLAGNCVGVISEYGGQKLSEATTKRDGY" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6182-MONOMER" "uncharacterized protein YahC" ["YahC"] "MNGLTATGVTVGICAGLWQLVSSHVGLSQGWELLGTIGFVAFCSFYAAGGGKSGFIRSLAVNYSGMVWAFFAALTAGWLASVSGLSAFWASVITTVPFSAVVVWQGRFWLLSFIPGGFLGMTLFFASGMNWTVTLLGFLAGNCVGVISEYGGQKLSEATTKRDGY" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6183-MONOMER" "ankyrin repeat-containing protein YahD" ["YahD", "putative transcriptional regulator with ankyrin domain"] "MSIKNLPADYLLAAQQGDIDKVKTCLALGVDINTCDRQGKTAITLASLYQQYACVQALIDAGADINKQDHTCLNPFLISCLNDDLTLLRIILPAKPDLNCVTRFGGVGLTPACEKGHLSIVKELLAHTEINVNQTNHVGWTPLLEAIVLNDGGIKQQAIVQLLLEHGASPHLTDKYGKTPLELARERGFEEIAQLLIAAGA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6184-MONOMER" "DUF2877 domain-containing protein YahE" ["YahE"] "MWALTADADFLAQRGQGQVEQVFARAVNIALPARQQLLTLLCEEYDNAPNSCRLALTHFDDLFRHGDKVQFDDQGITVGQHLHIEMSRCRRWLSPTLQMTAVNFHLIAWLQWHDIIHQHLGENETLFNYRGDNPFYQALNKELHIKRRAVIQAVNDKQNIASAVASMMGLGIGLTPSADDYLTGLALILFIPGHPAEKYKEEFYLGLQRGKNNTTLLSAITLEAALQQRCRENIHRFIHNIIYDIPGNATQAIEKIKHIGSSSGCDMLYGMADGCALSQTYGGNYVS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6185-MONOMER" "putative acyl-CoA synthetase YahF" ["YahF", "putative acyl-CoA synthetase with NAD(P)-binding domain and succinyl-CoA synthetase domain"] "MSVKIVIKPNTYFDSVSLMSISTRANKLDGVEQAFVAMATEMNKGVLKNLGLLTPELEQAKNGDLMIVINGKSGADNEQLLVEIEELFNTKAQSGSHEARYATIGSAKKHIPESNLAVISVNGLFAAREARQALQNDLNVMLFSDNVSVEDELALKQLAHEKGLLMMGPDCGTAIINGAALCFGNAVRRGNIGIVGASGTGSQELSVRIHEFGGGVSQLIGTGGRDLSEKIGGLMMLDAIGMLENDPQTEIIALISKPPAPAVARKVLERARACRKPVVVCFLDRGETPVDEQGLQFARGTKEAALKAVMLSGVKQENLDLHTLNQPLIADVRARLQPQQKYIRGLFCGGTLCDETMFAVMEKHGDVYSNIQPDPEFRLKDINRSIKHTFLDFGDDDFTNGKPHPMIDPTNRISRLIEEARDPEVAVIVMDFVLGFGSHEDPVGSTIETIKEAKAIAAAEGRELIILAYVLGTDLDTPSLEQQSQMLLDAGVILASSSTNTGLLAREFICKGEEA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6186-MONOMER" "DUF1116 domain-containing protein YahG" ["YahG"] "MSQSLFSQPLNVINVGIAMFSDDLKKQHVEVTQLDWTPPGQGNMQVVQALDNIADSPLADKIAAANQQALERIIQSHPVLIGFDQAINVVPGMTAKTILHAGPPITWEKMCGAMKGAVTGALVFEGLAKDLDEAAELAASGEITFSPCHEHDCVGSMAGVTSASMFMHIVKNKTYGNIAYTNMSEQMAKILRMGANDQSVIDRLNWMRDVQGPILRDAMKIIGEIDLRLMLAQALHMGDECHNRNNAGTTLLIQALTPGIIQAGYSVEQQREVFEFVASSDYFSGPTWMAMCKAAMDAAHGIEYSTVVTTMARNGVEFGLRVSGLPGQWFTGPAQQVIGPMFAGYKPEDSGLDIGDSAITETYGIGGFAMATAPAIVALVGGTVEEAIDFSRQMREITLGENPNVTIPLLGFMGVPSAIDITRVGSSGILPVINTAIAHKDAGVGMIGAGIVHPPFACFEKAILGWCERYGV" [] ["CCO-CYTOSOL", "CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6186-MONOMER" "DUF1116 domain-containing protein YahG" ["YahG"] "MSQSLFSQPLNVINVGIAMFSDDLKKQHVEVTQLDWTPPGQGNMQVVQALDNIADSPLADKIAAANQQALERIIQSHPVLIGFDQAINVVPGMTAKTILHAGPPITWEKMCGAMKGAVTGALVFEGLAKDLDEAAELAASGEITFSPCHEHDCVGSMAGVTSASMFMHIVKNKTYGNIAYTNMSEQMAKILRMGANDQSVIDRLNWMRDVQGPILRDAMKIIGEIDLRLMLAQALHMGDECHNRNNAGTTLLIQALTPGIIQAGYSVEQQREVFEFVASSDYFSGPTWMAMCKAAMDAAHGIEYSTVVTTMARNGVEFGLRVSGLPGQWFTGPAQQVIGPMFAGYKPEDSGLDIGDSAITETYGIGGFAMATAPAIVALVGGTVEEAIDFSRQMREITLGENPNVTIPLLGFMGVPSAIDITRVGSSGILPVINTAIAHKDAGVGMIGAGIVHPPFACFEKAILGWCERYGV" [] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6188-MONOMER" "carbamate kinase-like protein YahI" ["YahI"] "MKELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHKREGLPLTPLANCVADTQGGIGYLIQQALNNRLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSDSQRDELQKANPDWCFVEDAGRGYRRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKVCIHFGKPQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITTPECLPAALRGETGTHIIKT" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6189-MONOMER" "amidohydrolase family protein YahJ" ["YahJ", "putative deaminase with metallo-dependent hydrolase domain"] "MKESNSRREFLSQSGKMVTAAALFGTSVPLAHAAVAGTLNCEANNTMKITDPHYYLDNVLLETGFDYENGVAVQTRTARQTVEIQDGKIVALRENKLHPDATLPHYDAGGKLMLPTTRDMHIHLDKTFYGGPWRSLNRPAGTTIQDMIKLEQKMLPELQPYTQERAEKLIDLLQSKGTTIARSHCNIEPVSGLKNLQNLQAVLARRQAGFECEIVAFPQHGLLLSKSEPLMREAMQAGAHYVGGLDPTSVDGAMEKSLDTMFQIALDYDKGVDIHLHETTPAGVAAINYMVETVEKTPQLKGKLTISHAFALATLNEQQVDELANRMVVQQISIASTVPIGTLHMPLKQLHDKGVKVMTGTDSVIDHWSPYGLGDMLEKANLYAQLYIRPNEQNLSRSLFLATGDVLPLNEKGERVWPKAQDDASFVLVDASCSAEAVARISPRTATFHKGQLVWGSVAG" [] [] 0 [] {} 0 "G6190-MONOMER" "aldehyde reductase, NADPH-dependent" ["YahK", "AdhZ2"] "MKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGIVADIEMIRADQINEAYERMLRGDVKYRFVIDNRTLTD" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 2} 0 @@ -1896,7 +1896,7 @@ "G6207-MONOMER" "DUF2058 domain-containing protein YaiL" ["YaiL", "nucleoprotein/polynucleotide-associated enzyme"] "MAKLTLQEQLLKAGLVTSKKAAKVERTAKKSRVQAREARAAVEENKKAQLERDKQLSEQQKQAALAKEYKAQVKQLIEMNRITIANGDIGFNFTDGNLIKKIFVDKLTQAQLINGRLAIARLLVDNNSEGEYAIIPASVADKIAQRDASSIVLHSALSAEEQDEDDPYADFKVPDDLMW" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6208-MONOMER" "S-formylglutathione hydrolase FrmB" ["YaiM", "FrmB"] "MELIEKHVSFGGWQNMYRHYSQSLKCEMNVGVYLPPKAANEKLPVLYWLSGLTCNEQNFITKSGMQRYAAEHNIIVVAPDTSPRGSHVADADRYDLGQGAGFYLNATQAPWNEHYKMYDYIRNELPDLVMHHFPATAKKSISGHSMGGLGALVLALRNPDEYVSVSAFSPIVSPSQVPWGQQAFAAYLAENKDAWLDYDPVSLISQGQRVAEIMVDQGLSDDFYAEQLRTPNLEKICQEMNIKTLIRYHEGYDHSYYFVSSFIGEHIAYHANKLNMR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6209-MONOMER" "DNA-binding transcriptional repressor FrmR" ["YaiN", "FrmR"] "MPSTPEEKKKVLTRVRRIRGQIDALERSLEGDAECRAILQQIAAVRGAANGLMAEVLESHIRETFDRNDCYSREVSQSVDDTIELVRAYLK" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G6210-MONOMER" "outer membrane protein YaiO" ["YaiO"] "MIKRTLLAAAIFSALPAYAGLTSITAGYDFTDYSGDHGNRNLAYAELVAKVENATLLFNLSQGRRDYETEHFNATRGQGAVWYKWNNWLTTRTGIAFADNTPVFARQDFRQDINLALLPKTLFTTGYRYTKYYDDVEVDAWQGGVSLYTGPVITSYRYTHYDSSDAGGSYSNMISVRLNDPRGTGYTQLWLSRGTGAYTYDWTPETRYGSMKSVSLQRIQPLTEQLNLGLTAGKVWYDTPTDDFNGLQLAARLTWKF" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"G6210-MONOMER" "outer membrane protein YaiO" ["YaiO"] "MIKRTLLAAAIFSALPAYAGLTSITAGYDFTDYSGDHGNRNLAYAELVAKVENATLLFNLSQGRRDYETEHFNATRGQGAVWYKWNNWLTTRTGIAFADNTPVFARQDFRQDINLALLPKTLFTTGYRYTKYYDDVEVDAWQGGVSLYTGPVITSYRYTHYDSSDAGGSYSNMISVRLNDPRGTGYTQLWLSRGTGAYTYDWTPETRYGSMKSVSLQRIQPLTEQLNLGLTAGKVWYDTPTDDFNGLQLAARLTWKF" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 0 "G6212-MONOMER" "IS2 element protein InsA" ["InsC1"] "MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6214-MONOMER" "putative acyltransferase, N-terminal fragment" ["YaiX", "YaiF", "YaiX_1"] "MDLLPFLLDANLSATNPPAIPHWWKRQPLIPNLLSQELKNYLKLNVKEKNIQIADQVIIDETAGEVVIGANTRICHGAVIQGPVVIGANCLIGNSNYAFIRPGTIISNGVKIGFATEIKNAVIEAEATIGPQCFIADSVVANQAYLGAQVRTSNHRLDEQPVSVRTPEGIIATGCDKLGCYIGQRSRLGVQVIILPGRIISPNTQLGPRVIVERNLPTGTYSLRQELIRTGD" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6215-MONOMER" "putative glucosyltransferase" ["YaiP"] "MKTWIFICMSIAMLLWFLSTLRRKPSQKKGCIDAIIPAYNEGPCLAQSLDNLLRNPYFCRVICVNDGSTDNTEAVMAEVKRKWGDRFVAVTQKNTGKGGALMNGLNYATCDQVFLSDADTYVPPDQDGMGYMLAEIERGADAVGGIPSTALKGAGLLPHIRATVKLPMIVMKRTLQQLLGGAPFIISGACGMFRTDVLRKFGFSDRTKVEDLDLTWTLVANGYRIRQANRCIVYPQECNSPREEWRRWRRWIVGYAVCMRLHKRLLFSRFGIFSIFPMLLVVLYGVGIYLTTWFNEFITTGPHGVVLAMFPLIWVGVVCVIGAFSAWFHRCWLLVPLAPLSVVYVLLAYAIWIIYGLIAFFTGREPQRDKPTRYSALVEASTAYSQPSVTGTEKLSEA" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -1905,30 +1905,30 @@ "G6226-MONOMER" "putative DNA-binding transcriptional regulator IprA" ["IprA", "YaiV"] "MLSVVKPLQEFGKLDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREENVLIGITQAPYIMGLADGLMKNDIPYKLISEGNCTGYHLPAKQTITLIEQNQLWRDAFYWLAWQNRILELRDVQLIGHNSYEQIRATLLSMIDWNEELRSRIGVMNYIHQRTRISRSVVAEVLAALRKGGYIEMNKGKLVAINRLPSEY" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6227-MONOMER" "surface-exposed outer membrane lipoprotein" ["YaiW"] "MSRVNPLSSLSLLAVLVLAGCSSQAPQPLKKGEKAIDVASVVRQKMPASVKDRDAWAKDLATTFESQGLAPTLENVCSVLAVAQQESNYQADPAVPGLSKIAWQEIDRRAERMHIPAFLVHTALKIKSPNGKSYSERLDSVRTEKQLSAIFDDLINMVPMGQTLFGSLNPVRTGGPMQVSIAFAEQHTKGYPWKMDGTVRQEVFSRRGGLWFGTYHLLNYPASYSAPIYRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYDSKEPGKTELATRKLAAKLGMSDSEIRRQLEKGDSFSFEETALYKKVYQLAETKTGKSLPREMLPGIQLESPKITRNLTTAWFAKRVDERRARCMKQ" ["CCO-CYTOSOL", "CCO-OUTER-MEM"] [] 0 [] {} 0 "G6228-MONOMER" "DUF2755 domain-containing inner membrane protein YaiY" ["YaiY"] "MADFTLSKSLFSGKYRNASSTPGNIAYALFVLFCFWAGAQLLNLLVHAPGVYERLMQVQETGRPRVEIGLGVGTIFGLIPFLVGCLIFAVVALWLHWRHRRQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6229-MONOMER" "DUF2754 domain-containing protein YaiZ" ["YaiZ"] "MNLPVKIRRDWHYYAFAIGLIFILNGVVGLLGFEAKGWQTYAVGLVTWVISFWLAGLIIRRRDEETENAQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6229-MONOMER" "DUF2754 domain-containing protein YaiZ" ["YaiZ"] "MNLPVKIRRDWHYYAFAIGLIFILNGVVGLLGFEAKGWQTYAVGLVTWVISFWLAGLIIRRRDEETENAQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6230-MONOMER" "DUF188 domain-containing protein YaiI" ["YaiI"] "MTIWVDADACPNVIKEILYRAAERMQMPLVLVANQSLRVPPSRFIRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEAIEKGAAALNPRGERYTPATIRERLTMRDFMDTLRASGIQTGGPDSLSQRDRQAFAAELEKWWLEVQRSRG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6231-MONOMER" "DUF2773 domain-containing protein YkiA" ["YkiA"] "MIVAELATIKDKSDDEWWRALLQSRNDHLRQTALRNAHTPALLLTTLTEPQDRSLAINNPQLAADVKTAWLKEDPSLLLFVEQPDLSLLRDLVKTGATRKIRSEARHRLEEKQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6236-MONOMER" "1-deoxyxylulose-5-phosphate synthase YajO" ["YajO"] "MQYNPLGKTDLRVSRLCLGCMTFGEPDRGNHAWTLPEESSRPIIKRALEGGINFFDTANSYSDGSSEEIVGRALRDFARREDVVVATKVFHRVGDLPEGLSRAQILRSIDDSLRRLGMDYVDILQIHRWDYNTPIEETLEALNDVVKAGKARYIGASSMHASQFAQALELQKQHGWAQFVSMQDHYNLIYREEEREMLPLCYQEGVAVIPWSPLARGRLTRPWGETTARLVSDEVGKNLYKESDENDAQIAERLTGVSEELGATRAQVALAWLLSKPGIAAPIIGTSREEQLDELLNAVDITLKPEQIAELETPYKPHPVVGFK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6240-MONOMER" "nucleotide binding protein YajQ" ["YajQ"] "MPSFDIVSEVDLQEARNAVDNASREVESRFDFRNVEASFELNDASKTIKVLSESDFQVNQLLDILRAKLLKRGIEGSSLDVPENIVHSGKTWFVEAKLKQGIESATQKKIVKMIKDSKLKVQAQIQGDEIRVTGKSRDDLQAVMAMVRGGDLGQPFQFKNFRD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 -"G6242-MONOMER" "periplasmic folding chaperone" ["YbaU", "PpiD"] "MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNYAAKVNDQEISRGQFENAFNSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDTESLAGAEQAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDLKAGKGAEAMQAAGLKFGEPKTLSRSGRDPISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6242-MONOMER" "periplasmic folding chaperone" ["YbaU", "PpiD"] "MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNYAAKVNDQEISRGQFENAFNSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDTESLAGAEQAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDLKAGKGAEAMQAAGLKFGEPKTLSRSGRDPISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6243-MONOMER" "helix-hairpin-helix 3 family protein" ["YbaV"] "MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL" ["CCO-PERI-BAC"] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 "G6244-MONOMER" "long-chain acyl-CoA thioesterase FadM" ["TesC", "YbaW", "FadM", "thioesterase III"] "MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQWMTAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITLEPEGQVVADALITFVCIDLKTQKALALEGELREKLEQMVK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6245-MONOMER" "7-cyano-7-deazaguanine synthase" ["YbaX", "QueC"] "MKRAVVVFSGGQDSTTCLVQALQQYDEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVTLLNELAVSSLTRDSIPVPDYEPEADGIPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVSLGMAKDIRFETPLMWIDKAETWALADYYGKLDLVRNETLTCYNGFKGDGCGHCAACNLRANGLNHYLADKPTVMAAMKQKTGLR" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 "G6246-MONOMER" "HMP-PP phosphatase" ["Cof"] "MARLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGRHALEMQHILGALSLDAYLITGNGTRVHSLEGELLHRDDLPADVAELVLYQQWDTRASMHIFNDDGWFTGKEIPALLQAFVYSGFRYQIIDVKKMPLGSVTKICFCGDHDDLTRLQIQLYEALGERAHLCFSATDCLEVLPVGCNKGAALTVLTQHLGLSLRDCMAFGDAMNDREMLVSVGSGFIMGNAMPQLRAELPHLPVIGHCRNQAVSHYLTHWLDYPHLPYSPE" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "G6247-MONOMER" "DNA-binding transcriptional activator DecR" ["CyuR", "DecR", "YbaO"] "MLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYDEFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6250-MONOMER" "PF09619 family lipoprotein YbaY" ["YbaY"] "MKLVHMASGLAVAIALAACADKSADIQTPAPAANTSISATQQPAIQQPNVSGTVWIRQKVALPPDAVLTVTLSDASLADAPSKVLAQKAVRTEGKQSPFSFVLSFNPADVQPNARILLSAAITVNDKLVFITDTVQPVINQGGTKADLTLVPVQQTAVPVQASGGATTTVPSTSPTQVNPSSAVPAPTQY" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 0 +"G6250-MONOMER" "PF09619 family lipoprotein YbaY" ["YbaY"] "MKLVHMASGLAVAIALAACADKSADIQTPAPAANTSISATQQPAIQQPNVSGTVWIRQKVALPPDAVLTVTLSDASLADAPSKVLAQKAVRTEGKQSPFSFVLSFNPADVQPNARILLSAAITVNDKLVFITDTVQPVINQGGTKADLTLVPVQQTAVPVQASGGATTTVPSTSPTQVNPSSAVPAPTQY" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 "G6251-MONOMER" "DNA base-flipping protein" ["YbaZ", "Atl", "alkyltransferase-like protein"] "MLVSCAMRLHSGVFPDYAEKLPQEEKMEKEDSFPQRVWQIVAAIPEGYVTTYGDVAKLAGSPRAARQVGGVLKRLPEGSTLPWHRVVNRHGTISLTGPDLQRQRQALLAEGVMVSGSGQIDLQRYRWNY" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6252-MONOMER" "cyclic di-GMP phosphodiesterase PdeB" ["PdeB", "YlaB"] "MRTRHLVGLISGVLILSVLLPVGLSIWLAHQQVETSFIEELDTYSSRVAIRANKVATQGKDALQELERWQGAACSEAHLMEMRRVSYSYRYIQEVAYIDNNVPQCSSLEHESPPDTFPEPGKISKDGYRVWLTSHNDLGIIRYMVAMGTAHYVVMIDPASFIDVIPYSSWQIDAAIIGNAHNVVITSSDEIAQGIITRLQKTPGEHIENNGIIYDILPLPEMNISIITWASTKMLQKGWHRQVFIWLPLGLVIGLLAAMFVLRILRRIQSPHHRLQDAIENRDICVHYQPIVSLANGKIVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSEPLTLLIIRSVFEDMGDWLRQHPQQHISINLESPVLTSEKIPQLLRDMINHYQVNPRQIALELTEREFADPKTSAPIISRYREAGHEIYLDDFGTGYSSLSYLQDLDVDILKIDKSFVDALEYKNVTPHIIEMAKTLKLKMVAEGIETSKQEEWLRQHGVHYGQGWLYSKALPKEDFLRWAEQHL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6253-MONOMER" "putative inner membrane protein" ["YlaC"] "MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLSGSVWLLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAILNSPRVADVHKEQLQKMIVRKGELSFYDIFTLARAESTS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6252-MONOMER" "cyclic di-GMP phosphodiesterase PdeB" ["PdeB", "YlaB"] "MRTRHLVGLISGVLILSVLLPVGLSIWLAHQQVETSFIEELDTYSSRVAIRANKVATQGKDALQELERWQGAACSEAHLMEMRRVSYSYRYIQEVAYIDNNVPQCSSLEHESPPDTFPEPGKISKDGYRVWLTSHNDLGIIRYMVAMGTAHYVVMIDPASFIDVIPYSSWQIDAAIIGNAHNVVITSSDEIAQGIITRLQKTPGEHIENNGIIYDILPLPEMNISIITWASTKMLQKGWHRQVFIWLPLGLVIGLLAAMFVLRILRRIQSPHHRLQDAIENRDICVHYQPIVSLANGKIVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSEPLTLLIIRSVFEDMGDWLRQHPQQHISINLESPVLTSEKIPQLLRDMINHYQVNPRQIALELTEREFADPKTSAPIISRYREAGHEIYLDDFGTGYSSLSYLQDLDVDILKIDKSFVDALEYKNVTPHIIEMAKTLKLKMVAEGIETSKQEEWLRQHGVHYGQGWLYSKALPKEDFLRWAEQHL" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6253-MONOMER" "putative inner membrane protein" ["YlaC"] "MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLSGSVWLLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAILNSPRVADVHKEQLQKMIVRKGELSFYDIFTLARAESTS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6255-MONOMER" "potassium dependent, small conductance mechanosensitive channel" ["KefA", "MscK", "AefA"] "MTMFQYYKRSRHFVFSAFIAFVFVLLCQNTAFARASSNGDLPTKADLQAQLDSLNKQKDLSAQDKLVQQDLTDTLATLDKIDRIKEETVQLRQKVAEAPEKMRQATAALTALSDVDNDEETRKILSTLSLRQLETRVAQALDDLQNAQNDLASYNSQLVSLQTQPERVQNAMYNASQQLQQIRSRLDGTDVGETALRPSQKVLMQAQQALLNAEIDQQRKSLEGNTVLQDTLQKQRDYVTANSARLEHQLQLLQEAVNSKRLTLTEKTAQEAVSPDEAARIQANPLVKQELEINQQLSQRLITATENGNQLMQQNIKVKNWLERALQSERNIKEQIAVLKGSLLLSRILYQQQQTLPSADELENMTNRIADLRLEQFEVNQQRDALFQSDAFVNKLEEGHTNEVNSEVHDALLQVVDMRRELLDQLNKQLGNQLMMAINLQINQQQLMSVSKNLKSILTQQIFWVNSNRPMDWDWIKAFPQSLKDEFKSMKITVNWQKAWPAVFIAFLAGLPLLLIAGLIHWRLGWLKAYQQKLASAVGSLRNDSQLNTPKAILIDLIRALPVCLIILAVGLILLTMQLNISELLWSFSKKLAIFWLVFGLCWKVLEKNGVAVRHFGMPEQQTSHWRRQIVRISLALLPIHFWSVVAELSPLHLMDDVLGQAMIFFNLLLIAFLVWPMCRESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLAGRWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIALEQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTMGSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFGSLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLIILFERPVRIGDTVTIGSFSGTVSKIRIRATTITDFDRKEVIIPNKAFVTERLINWSLTDTTTRLVIRLGVAYGSDLEKVRKVLLKAATEHPRVMHEPMPEVFFTAFGASTLDHELRLYVRELRDRSRTVDELNRTIDQLCRENDINIAFNQLEVHLHNEKGDEVTEVKRDYKGDDPTPAVG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6258-MONOMER" "TraB family protein YbaP" ["YbaP"] "MDLLYRVKTLWAALRGNHYTWPAIDITLPGNRHFHLIGSIHMGSHDMAPLPTRLLKKLKNADALIVEADVSTSDTPFANLPACEALEERISEEQLQNLQHISQEMGISPSLFSTQPLWQIAMVLQATQAQKLGLRAEYGIDYQLLQAAKQQHKPVIELEGAENQIAMLLQLPDKGLALLDDTLTHWHTNARLLQQMMSWWLNAPPQNNDITLPNTFSQSLYDVLMHQRNLAWRDKLRAMPPGRYVVAVGALHLYGEGNLPQMLR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6259-MONOMER" "DNA-binding transcriptional regulator YbaQ" ["YbaQ"] "MKQATRKPTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFWLNLQAAVDLWEVENNMRTQEELGRIETVAEYLARREERAKKVA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6260-MONOMER" "Cu+ exporting P-type ATPase" ["YbaR", "CopA", "AtcU"] "MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSITEAHVTGTASAEQLIETIKQAGYDASVSHPKAKPLAESSIPSEALTAVSEALPAATADDDDSQQLLLSGMSCASCVTRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEAIEDDAKRRERQQETAVATMKRFRWQAIVALAVGIPVMVWGMIGDNMMVTADNRSLWLVIGLITLAVMVFAGGHFYRSAWKSLLNGAATMDTLVALGTGVAWLYSMSVNLWPQWFPMEARHLYYEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPPTARLVTDEGEKSVPLAEVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGEPIPQQKGEGDSVHAGTVVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALVSAAIWYFFGPAPQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTVVFDKTGTLTEGKPQVVAVKTFADVDEAQALRLAAALEQGSSHPLARAILDKAGDMQLPQVNGFRTLRGLGVSGEAEGHALLLGNQALLNEQQVGTKAIEAEITAQASQGATPVLLAVDGKAVALLAVRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVLPDGKAEAIKHLQSEGRQVAMVGDGINDAPALAQADVGIAMGGGSDVAIETAAITLMRHSLMGVADALAISRATLHNMKQNLLGAFIYNSIGIPVAAGILWPFTGTLLNPVVAGAAMALSSITVVSNANRLLRFKPKE" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6261-MONOMER" "glutaminase 1" ["GlsA", "YbaS"] "MLDANKLQQAVDQAYTQFHSLNGGQNADYIPFLANVPGQLAAVAIVTCDGNVYSAGDSDYRFALESISKVCTLALALEDVGPQAVQDKIGADPTGLPFNSVIALELHGGKPLSPLVNAGAIATTSLINAENVEQRWQRILHIQQQLAGEQVALSDEVNQSEQTTNFHNRAIAWLLYSAGYLYCDAMEACDVYTRQCSTLLNTIELATLGATLAAGGVNPLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLPGKSGVGGGILAVVPGVMGIAAFSPPLDEDGNSVRGQKMVASVAKQLGYNVFKG" [] [] 0 [] {} 1 "G6263-MONOMER" "DNA-binding transcriptional dual regulator CueR" ["YbbI", "CueR", "CopR"] "MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALANACPGDDSADCPIIENLSGCCHHRAG" [] ["CCO-CYTOSOL"] 0 [] {"CU+": 1} 1 -"G6264-MONOMER" "NfeD-like family protein YbbJ" ["YbbJ"] "MMELMVVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGLVVWLVPLGWEWQGVMFAILTLLAAWLWWKWLSRRVREQKHSDSHLNQRGQQLIGRRFVLESPLVNGRGHMRVGDSSWPVSASEDLGAGTHVEVIAIEGITLHIRAVSS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6264-MONOMER" "NfeD-like family protein YbbJ" ["YbbJ"] "MMELMVVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGLVVWLVPLGWEWQGVMFAILTLLAAWLWWKWLSRRVREQKHSDSHLNQRGQQLIGRRFVLESPLVNGRGHMRVGDSSWPVSASEDLGAGTHVEVIAIEGITLHIRAVSS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6265-MONOMER" "PHB domain-containing protein QmcA" ["YbbK", "QmcA"] "MLIFIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPGLSLVVPFMDRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEATNPWGIKVTRIEIRDVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQILKAEGERQSAFLQAEARERSAEAEARATKMVSEAIASGDIQAVNYFVAQKYTEALQQIGSSSNSKVVMMPLEASSLMGSIAGIAELVKDSANKRTQP" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6267-MONOMER" "putative iron ABC exporter membrane subunit FetB" ["YbbM", "FetB"] "MNSHNITNESLALALMLVVVAILISHKEKLALEKDILWSVGRAIIQLIIVGYVLKYIFSVDDASLTLLMVLFICFNAAWNAQKRSKYIAKAFISSFIAITVGAGITLAVLILSGSIEFIPMQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKLSLGATPKQASAILIRDSIRAALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLTYRKFYNSRHQLVVTQLKKK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6267-MONOMER" "putative iron ABC exporter membrane subunit FetB" ["YbbM", "FetB", "putative iron ABC exporter membrane subunit FetB"] "MNSHNITNESLALALMLVVVAILISHKEKLALEKDILWSVGRAIIQLIIVGYVLKYIFSVDDASLTLLMVLFICFNAAWNAQKRSKYIAKAFISSFIAITVGAGITLAVLILSGSIEFIPMQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKLSLGATPKQASAILIRDSIRAALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLTYRKFYNSRHQLVVTQLKKK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6268-MONOMER" "chaperedoxin" ["CnoX", "Trxsc", "YbbN"] "MSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDKVLPREEELKAQQAMQLMQESNYTDALPLLKDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLKTIPLQDQDTRYQGLVAQIELLKQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRKDLTAADGQTRKTFQEILAALGTGDALASKYRRQLYALLY" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6269-MONOMER" "NADP+-dependent aldehyde reductase YbbO" ["YbbO"] "MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNSMGFTGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPKMRYPVTLVTWAVMVLKRLLPGRVMDKILQG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6271-MONOMER" "putative RHS domain-containing protein YlbH" ["RhsH", "YlbH"] "MLALMDADGNIAWSGEYDEWGNQLNEENPHHLHQPYRLPGQQYDKESGLYYNRNRYYDPLQGRYITQDPIGLEGGWSLYAYPLNPVNGIDPLGLSPADVALIRRKDQLNHQRAWDILSDTYEDMKRLNLGGTDQFFHCMAFCRVSKLNDAGVSRSAKGLGYEKEIRDYGLNLFGMYGRKVKLSHSEMIEDNKKDLAVNDHGLTCPSTTDCSDRCSDYINPEHKKTIKALQDAGYLK" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -1943,7 +1943,7 @@ "G6284-MONOMER" "(S)-ureidoglycine aminohydrolase" ["UghY", "AllE", "YlbA"] "MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI" [] ["CCO-CYTOSOL"] 0 [] {"MN+2": 1} 0 "G6285-MONOMER" "allantoate amidohydrolase" ["YlbB", "AllC"] "MITHFRQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 2} 1 "G6286-MONOMER" "ureidoglycolate dehydrogenase" ["YlbC", "AllD"] "MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKNPFAQ" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G6287-MONOMER" "putative oxamate carbamoyltransferase FdrA" ["YlbD", "FdrA", "putative acyl-CoA synthetase with NAD(P)-binding Rossmann-fold domain"] "MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQALTQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIHPLSPAAQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 0 +"G6287-MONOMER" "putative oxamate carbamoyltransferase FdrA" ["YlbD", "FdrA", "putative acyl-CoA synthetase with NAD(P)-binding Rossmann-fold domain"] "MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQALTQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIHPLSPAAQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "G6288-MONOMER" "DUF1116 domain-containing protein YlbE" ["YlbE"] "MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNEGKTLLHAGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPSWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6289-MONOMER" "DUF2877 domain-containing protein YlbF" ["YlbF"] "MTIIHPLLASSSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAASDPLPAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRPFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP" [] [] 0 [] {} 0 "G6290-MONOMER" "putative fimbrial protein SfmA" ["SfmA"] "MKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTDIFNAVGNTSALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIASSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANADATFIMRYE" [] ["CCO-EXTRACELLULAR", "CCO-PILUS"] 0 [] {} 0 @@ -1963,7 +1963,7 @@ "G6309-MONOMER" "DLP12 prophage; putative phage lysis protein" ["EssD", "YbcR", "VlyS"] "MKSMDKLTTGVAYGTSAGSAGYWFLQLLDKVTPSQWAAIGVLGSLVFGLLTYLTNLYFKIKEDKRKAARGE" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6310-MONOMER" "DLP12 prophage; lysozyme" ["RrrD", "YbcS", "LycV"] "MPPSLRKAVAAAIGGGAIAIASVLITGPSGNDGLEGVSYIPYKDIVGVWTVCHGHTGKDIMLGKTYTKAECKALLNKDLATVARQINPYIKVDIPETTRGALYSFVYNVGAGNFRTSTLLRKINQGDIKGACDQLRRWTYAGGKQWKGLMTRREIEREVCLWGQQ" [] [] 0 [] {} 0 "G6311-MONOMER" "DLP12 prophage; putative prophage endopeptidase RzpD" ["RzpD", "YbcT"] "MSRVTAIISALIICIIVSLSWAVNHYRDNAIAYKVQRDKNARELKLANAAITDMQMRQRDVAALDAKYTKELADAKAENDALRDDVAAGRRRLHIKAVCQSVREATTASGVDNAASPRLADTAERDYFTLRERLITMQKQLEGTQKYINEQCR" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6312-MONOMER" "DLP12 prophage; prophage lipoprotein BorD" ["Iss", "BorD", "Bor", "YbcU", "VboR", "lipoprotein bor homolog from lambdoid prophage DLP12"] "MKKMLLATALALLITGCAQQTFTVQNKQTAVAPKETITHHFFVSGIGQKKTVDAAKICGGAENVVKTETQQTFVNGLLGFITLGIYTPLEARVYCSK" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"G6312-MONOMER" "DLP12 prophage; prophage lipoprotein BorD" ["Iss", "BorD", "Bor", "YbcU", "VboR", "lipoprotein bor homolog from lambdoid prophage DLP12"] "MKKMLLATALALLITGCAQQTFTVQNKQTAVAPKETITHHFFVSGIGQKKTVDAAKICGGAENVVKTETQQTFVNGLLGFITLGIYTPLEARVYCSK" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6313-MONOMER" "DLP12 prophage; DUF1398 domain-containing protein YbcV" ["YbcV"] "MAQVAIFKEIFDQVRKDLNCELFYSELKRHNVSHYIYYLATDNIHIVLENDNTVLIKGLKKVVNVKFSRNTHLIETSYDRLKSREITFQQYRENLAKAGVFRWITNIHEHKRYYYTFDNSLLFTESIQNTTQIFPR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6314-MONOMER" "DLP12 prophage; uncharacterized protein YbcW" ["YbcW"] "MNKEQSADDPSVDLIRVKNMLNSTISMSYPDVVIACIEHKVSLEAFRAIEAALVKHDNNMKDYSLVVD" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6315-MONOMER" "DLP12 prophage; putative tail fiber assembly protein TfaD" ["TfaD", "YbcX"] "MNAMGSDYIREVNVVKSARVGYSKMLLGVYAYFIEHKQRNTLIPAGFVAVFNSDESSWHLVEDHRGKTVYDVASGDALFISELGPLPENVTWLSPEGEFQKWNGTAWVKDAEAEKLFRIREAEETKNSLMQVASEHIAPLQDAVDLEIATEEETSLLEAWKKYRVLLNRVDTSTAPDIEWPTNPVRE" [] [] 0 [] {} 0 @@ -1973,10 +1973,10 @@ "G6319-MONOMER" "DNA-binding transcriptional activator CusR" ["YlcA", "CusR response regulator"] "MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6320-MONOMER" "copper/silver export system outer membrane channel" ["IbeB", "CusC", "YlcB"] "MSPCKLLPFCVALALTGCSLAPDYQRPAMPVPQQFSLSQNGLVNAADNYQNAGWRTFFVDNQVKTLISEALVNNRDLRMATLKVQEARAQYRLTDADRYPQLNGEGSGSWSGNLKGNTATTREFSTGLNASFDLDFFGRLKNMSEAERQNYLATEEAQRAVHILLVSNVAQSYFNQQLAYAQLQIAEETLRNYQQSYAFVEKQLLTGSSNVLALEQARGVIESTRSDIAKRQGELAQANNALQLLLGSYGKLPQAQTVNSDSLQSVKLPAGLSSQILLQRPDIMEAEHALMAANANIGAARAAFFPSISLTSGISTASSDLSSLFNASSGMWNFIPKIEIPIFNAGRNQANLDIAEIRQQQSVVNYEQKIQNAFKEVADALALRQSLNDQISAQQRYLASLQITLQRARALYQHGAVSYLEVLDAERSLFATRQTLLDLNYARQVNEISLYTALGGG" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 "G6321-MONOMER" "copper/silver export system periplasmic binding protein" ["CusX", "CusF", "YlcC", "ORF110"] "MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 -"G6322-MONOMER" "copper/silver export system membrane fusion protein" ["CusB", "YlcD"] "MKKIALIIGSMIAGGIISAAGFTWVAKAEPPAEKTSTAERKILFWYDPMYPNTRFDKPGKSPFMDMDLVPKYADEESSASGVRIDPTQTQNLGVKTATVTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDPVWVTAAIPESIAWLVKDASQFTLTVPARPDKTLTIRKWTLLPGVDAATRTLQLRLEVDNADEALKPGMNAWLQLNTASEPMLLIPSQALIDTGSEQRVITVDADGRFVPKRVAVFQASQGVTALRSGLAEGEKVVSSGLFLIDSEANISGALERMRSESATHAH" ["CCO-PERI-BAC"] ["CCO-CE-BAC", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 1 +"G6322-MONOMER" "copper/silver export system membrane fusion protein" ["CusB", "YlcD"] "MKKIALIIGSMIAGGIISAAGFTWVAKAEPPAEKTSTAERKILFWYDPMYPNTRFDKPGKSPFMDMDLVPKYADEESSASGVRIDPTQTQNLGVKTATVTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDPVWVTAAIPESIAWLVKDASQFTLTVPARPDKTLTIRKWTLLPGVDAATRTLQLRLEVDNADEALKPGMNAWLQLNTASEPMLLIPSQALIDTGSEQRVITVDADGRFVPKRVAVFQASQGVTALRSGLAEGEKVVSSGLFLIDSEANISGALERMRSESATHAH" ["CCO-PERI-BAC"] ["CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 1 "G6323-MONOMER" "miniconductance mechanosensitive channel YbdG" ["YbdG"] "MQDLISQVEDLAGIEIDHTTSMVMIFGIIFLTAVVVHIILHWVVLRTFEKRAIASSRLWLQIITQNKLFHRLAFTLQGIIVNIQAVFWLQKGTEAADILTTCAQLWIMMYALLSVFSLLDVILNLAQKFPAASQLPLKGIFQGIKLIGAILVGILMISLLIGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIGLTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSISIDVTSIRFLDEDEMQRLNKAHLLKPYLTSRHQEINEWNRQQGSTESVLNLRRMTNIGTFRAYLNEYLRNHPRIRKDMTLMVRQLAPGDNGLPLEIYAFTNTVVWLEYESIQADIFDHIFAIVEEFGLRLHQSPTGNDIRSLAGAFKQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "G6324-MONOMER" "PF04237 family protein YbdF" ["YbdF"] "MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVRPG" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6325-MONOMER" "DUF1158 domain-containing protein YbdJ" ["YbdJ"] "MKHPLETLTTAAGILLMAFLSCLLLPAPALGLALAQKLVTMFHLMDLSQLYTLLFCLWFLVLGAIEYFVLRFIWRRWFSLAD" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6325-MONOMER" "DUF1158 domain-containing protein YbdJ" ["YbdJ"] "MKHPLETLTTAAGILLMAFLSCLLLPAPALGLALAQKLVTMFHLMDLSQLYTLLFCLWFLVLGAIEYFVLRFIWRRWFSLAD" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6326-MONOMER" "putative glutamate—cysteine ligase 2" ["YbdK", "carboxylate-amine ligase"] "MPLPDFHVSEPFTLGIELEMQVVNPPGYDLSQDSSMLIDAVKNKITAGEVKHDITESMLELATDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFGYLIQQATVFGQHVHVGCASGDDAIYLLHGLSRFVPHFIALSAASPYMQGTDTRFASSRPNIFSAFPDNGPMPWVSNWQQFEALFRCLSYTTMIDSIKDLHWDIRPSPHFGTVEVRVMDTPLTLSHAVNMAGLIQATAHWLLTERPFKHQEKDYLLYKFNRFQACRYGLEGVITDPHTGDRRPLTEDTLRLLEKIAPSAHKIGASSAIEALHRQVVSGLNEAQLMRDFVADGGSLIGLVKKHCEIWAGD" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6329-MONOMER" "methionine transaminase" ["YbdL", "methionine-oxo-acid transaminase, PLP-dependent"] "MTNNPLIPQSKLPQLGTTIFTQMSALAQQHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQL" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6330-MONOMER" "ParB-like nuclease domain-containing protein YbdM" ["YbdM"] "MGDTMQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCVLWVKNSQLMPNDYNPNNVAPPEKKLLQKSIEIDGFTQPIVVTHTDKNAMEIVDGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIVRELSQLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQYSRAWTVK" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -1987,7 +1987,7 @@ "G6337-MONOMER" "nucleoside diphosphate kinase regulator" ["Rnk"] "MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6339-MONOMER" null ["YbdT", "CitG"] "MSMPATSTKTTKLATSLIDEYALLGWRAMLTEVNLSPKPGLVDRINCGAHKDMALEDFHRSALAIQGWLPRFIEFGACSAEMAPEAVLHGLRPIGMACEGDMFRATAGVNTHKGSIFSLGLLCAAIGRLLQLNQPVTPTTVCSTAASFCRGLTDRELRTNNSQLTAGQRLYQQLGLTGARGEAEAGYPLVINHALPHYLTLLDQGLDPELALLDTLLLLMAINGDTNVASRGGEGGLRWLQREAQTLLQKGGIRTPADLDYLRQFDRECIERNLSPGGSADLLILTWFLAQI" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6340-MONOMER" null ["YbdU", "CitX"] "MHLLPELASHHAVSIPELLVSRDERQARQHVWLKRHPVPLVSFTVVAPGPIKDSEVTRRIFNHGVTALRALAAKQGWQIQEQAALVSASGPEGMLSIAAPARDLKLATIELEHSHPLGRLWDIDVLTPEGEILSRRDYSLPPRRCLLCEQSAAVCARGKTHQLTDLLNRMEALLNDVDACNVN" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6345-MONOMER" "sensor histidine kinase DpiB" ["DpiB", "YbeP", "CitA", "MpdB"] "MLQLNENKQFAFFQRLAFPLRIFLLILVFSIFVIAALAQYFTASFEDYLTLHVRDMAMNQAKIIASNDSVISAVKTRDYKRLATIANKLQRDTDFDYVVIGDRHSIRLYHPNPEKIGYPMQFTKQGALEKGESYFITGKGSMGMAMRAKTPIFDDDGKVIGVVSIGYLVSKIDSWRAEFLLPMAGVFVVLLGILMLLSWFLAAHIRRQMMGMEPKQIARVVRQQEALFSSVYEGLIAVDPHGYITAINRNARKMLGLSSPGRQWLGKPIVEVVRPADFFTEQIDEKRQDVVANFNGLSVIANREAIRSGDDLLGAIISFRSKDEISTLNAQLTQIKQYVESLRTLRHEHLNWMSTLNGLLQMKEYDRVLAMVQGESQAQQQLIDSLREAFADRQVAGLLFGKVQRARELGLKMIIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQGVSTRADEPGEHGIGLYLIASYVTRCGGVITLEDNDPCGTLFSIYIPKVKPNDSSINPIDR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6345-MONOMER" "sensor histidine kinase DpiB" ["DpiB", "YbeP", "CitA", "MpdB"] "MLQLNENKQFAFFQRLAFPLRIFLLILVFSIFVIAALAQYFTASFEDYLTLHVRDMAMNQAKIIASNDSVISAVKTRDYKRLATIANKLQRDTDFDYVVIGDRHSIRLYHPNPEKIGYPMQFTKQGALEKGESYFITGKGSMGMAMRAKTPIFDDDGKVIGVVSIGYLVSKIDSWRAEFLLPMAGVFVVLLGILMLLSWFLAAHIRRQMMGMEPKQIARVVRQQEALFSSVYEGLIAVDPHGYITAINRNARKMLGLSSPGRQWLGKPIVEVVRPADFFTEQIDEKRQDVVANFNGLSVIANREAIRSGDDLLGAIISFRSKDEISTLNAQLTQIKQYVESLRTLRHEHLNWMSTLNGLLQMKEYDRVLAMVQGESQAQQQLIDSLREAFADRQVAGLLFGKVQRARELGLKMIIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQGVSTRADEPGEHGIGLYLIASYVTRCGGVITLEDNDPCGTLFSIYIPKVKPNDSSINPIDR" ["CCO-PM-BAC-NEG"] ["CCO-PERI-BAC", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6346-MONOMER" "DNA-binding transcriptional dual regulator DpiA" ["DpiA", "MpdA", "CriR", "CitB", "DpiA response regulator"] "MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6351-MONOMER" "Sel1 repeat-containing protein YbeQ" ["YbeQ"] "MIFTSSCCDNLSIDEIIERAEKGDCEAQYIVGFYYNRDSAIDSPDDEKAFYWLKLAAEQGHCEAQYSLGQKYTEDKSRHKDNEQAIFWLKKAALQGHTFASNALGWTLDRGEAPNYKEAVVWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYKQAALQGHSDAQNNLADLYEDGKGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGEGVDQDYKQAMYWYLKAAAQGSVGAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAECNDATAWYNLAIMYHYGEGRPVDLRQALDLYRKVQSSGTRDVSQEIRETEDLL" [] ["CCO-EXTRACELLULAR"] 0 [] {} 0 "G6352-MONOMER" "DUF1266 domain-containing protein YbeR" ["YbeR"] "MDMESQKILFALSTPMEIRNECCLPSHSSPKMYLGTCFFDLSSSWGIDDRDDLLRTIHRMIDNGHAARLAGFYHRWFRYSPCEWRDYLAELNEQGQAYAQFVASTAECCGEGGIKAWDYVRMGFLSRMGVLNNWLSEEESLWIQSRIHLRALRYYSNWRQYFAGYTFGRQYWQSPEDDHLPLLREFLARKEYDDSGNDMFYQLFASDDAYYPTLSWQPLAYYSACPETLKDMSDL" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -2003,8 +2003,8 @@ "G6363-MONOMER" "PhoH-like protein" ["YbeZ", "PhoL"] "MNIDTREITLEPADNARLLSLCGPFDDNIKQLERRLGIEINRRDNHFKLTGRPICVTAAADILRSLYVDTAPMRGQIQDIEPEQIHLAIKEARVLEQSAESVPEYGKAVNIKTKRGVIKPRTPNQAQYIANILDHDITFGVGPAGTGKTYLAVAAAVDALERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVEKLIERNVIEVAPLAYMRGRTLNDAFIILDESQNTTIEQMKMFLTRIGFNSKAVITGDVTQIDLPRNTKSGLRHAIEVLADVEEISFNFFHSEDVVRHPVVARIVNAYEAWEEAEQKRKAALAAERKREEQEQK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6364-MONOMER" "isopentenyl-adenosine A37 tRNA methylthiolase" ["YleA", "MiaB"] "MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQLGRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSVRGDRSPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNFEGTPDMIGKFVDVEITDVYPNSLRGKVVRTEDEMGLRVAETPESVIARTRKENDLGVGYYQP" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 2} 0 "G6370-MONOMER" "chitooligosaccharide outer membrane channel" ["ChiP", "YbfM"] "MRTFSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGGIYYWQRERDRKDVTDGDKYKTNLSHSTWNANLDFQSGYAADMFGLDIAAFTAIEMAENGDSSHPNEIAFSKSNKAYDEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLLAPHWSFMPGTYQGAEAGANFDYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKVDYLHSFGAKYDFKNNFVLEAAFGQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRDKVDDRSVNDLYDGTAWLQALTFGYRAADVVDLRLEGTWVKADGQQGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGFAIGASYVYAWDAKPATWQSNPDAYYDKNRTIEESAYSLDAVYTIQDGRAKGTMFKLHFTEYDNHSDIPSWGGGYGNIFQDERDVKFMVIAPFTIF" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 -"G6371-MONOMER" "lipoprotein ChiQ" ["YbfN", "ChiQ"] "MKKLILIAIMASGLVACAQSTAPQEDSRLKEAYSACINTAQGSPEKIEACQSVLNVLKKEKQHQQFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQEIRSNNK" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 0 -"G6374-MONOMER" "lipoprotein YbfP" ["YbfP"] "MKTNRSLVVIVSLITATLLLTACAQPEQSSLAGDWLLTPKDKTRGLTGSIAVNIAPFRCKTNCRGDNLPDNTRRWQLSGGNEKELTYLHNMSAQEKVGLNPGWQCYTSFFMRVCQGKPGTRPIVNEDYVSESGFFGSMMHVGIIELRRCQSENCQQELKAINTH" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 0 +"G6371-MONOMER" "lipoprotein ChiQ" ["YbfN", "ChiQ"] "MKKLILIAIMASGLVACAQSTAPQEDSRLKEAYSACINTAQGSPEKIEACQSVLNVLKKEKQHQQFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQEIRSNNK" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 +"G6374-MONOMER" "lipoprotein YbfP" ["YbfP"] "MKTNRSLVVIVSLITATLLLTACAQPEQSSLAGDWLLTPKDKTRGLTGSIAVNIAPFRCKTNCRGDNLPDNTRRWQLSGGNEKELTYLHNMSAQEKVGLNPGWQCYTSFFMRVCQGKPGTRPIVNEDYVSESGFFGSMMHVGIIELRRCQSENCQQELKAINTH" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 "G6376-MONOMER" "RHS repeats-containing protein YbfO" ["YbfO"] "MWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSQHRLVHYTRTQYAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRKPQVTWYGWDGDRLTTIQNDRTRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADTLQQSGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPARKIHLYHCDHRGLPLALVSTEGATEWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPVQYIDSMGLASKYGHLNNGGYGARPNKPPTPDPSKLPDIAKQLRLPYPIDQASSAPNVFKTFFRALSPYDYTLYCRKWVKPNLTCTPQDDSQYPGMDTKTASDYLPQTNWPTTQLPPGYTCAEPYLFPDINKPDGPATAGIDDLGEILAKMKQRTSRGIRK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6377-MONOMER" "putative transposase YbfL" ["YbfL", "putative transposase; receptor protein"] "MSGILLLTIFAVISGAESWEDIEDFGETHLDFLKQYGDFENGIPVHDTIARVVSCISPAKFHECFINWMRDCHSSNDKDVIAIDGKTLRHSYDKSRRRGAIHVISAFSTMHSLVIGQIKTDKKSNEITAIPELLNMLDIKGKIITTDAMGCQKDIAEKIQKQGGDYLFAVKGNQGRLNKAFEEKFPLKELNNPEHDSYAMSEKSHGREEIRLHIVCDVPDELIDFTFEWKGLKKLCVAVSFRSIIAEQKKEPEMTVRYYISSADLTAEKFATAIRNHWHVENKLHWRLDVVMNEDDCKIRRGNAAELFSGIRHIAINILTNDKVFKAGLRRKMRKAAMDRNYLASVLAGSGLS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6379-MONOMER" "radiation resistance protein YbgI" ["YbgI", "conserved metal-binding protein"] "MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 @@ -2017,65 +2017,65 @@ "G6386-MONOMER" "putative fimbrial chaperone YbgP" ["YbgP"] "MTFIKGLPLMLLTISLGCNAAVQPDRTRIVFNANDKATSLRIENQSDKLPYLAYSWIENEKGEKSDALLVALPPIQRLEPKATSQVRVVKQASTTQLPGDRETLFFYNMREIPPAPDKSSDHAILQVAIQSRIKLFWRPAALRKKAGEKVELQLQVSQQGNQLTLKNPTAYYLTIAYLGRNEKGVLPGFKTVMVAPFSTVNTNTGSYSGSQFYLGYMDDYGALRMTTLNCSGQCRLQAVEAK" [] ["CCO-PERI-BAC"] 0 [] {} 0 "G6387-MONOMER" "putative fimbrial usher protein YbgQ" ["YbgQ"] "MNIYRLSFVSCLVMAMPCAMAVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNKISNGQKINWQKKGDKTIPCINDSLVDKFGLKPDIRQSLPQIDRCIDFSSRPEMLFNFDQANQQLNISIPQAWLAWHSENWAPPSTWKEGVAGVLMDYNLFASSYRPQDGSSSTNLNAYGTAGINAGAWRLRSDYQLNKTDSEDNHDQSGGISRTYLFRPLPQLGSKLTLGETDFSSNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAQTNATVTISQSGRVIYQKKVPPGPFIIDDLNQSVQGTLDVKVTEEDGRVNNFQVSAASTPFLTRQGQVRYKLAAGQPRPSMSHQTENETFFSNEVSWGMLSNTSLYGGLLISDDDYHSAAMGIGQNMLWLGALSFDVTWASSHFDTQQDERGLSYRFNYSKQVDATNSTISLAAYRFSDRHFHSYANYLDHKYNDSDAQDEKQTISLSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIGDWRDISISTSFNTTHYEDKDRDNQIYLSISLPFGNGGRVGYDMQNSSHSTIHRMSWNDTLDERNSWGMSAGLQSDRPDNGAQVSGNYQHLSSAGEWDISGTYAASDYSSVSSSWSGSFTATQYGAAFHRRSSTNEPRLMVSTDGVADIPVQGNLDYTNHFGIAVVPLISSYQPSTVAVNMNDLPDGVTVAENVIKETWIEGAIGYKSLASRSGKDVNVIIRNASGQFPPLGADIRQDDSGISVGMVGEEGHAWLSGVAENQLFTVVWGEQSCIIHLPERLEDTTKRLILPCH" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 "G6394-MONOMER" "PF13985 family protein YbgS" ["YbgS"] "MKMTKLATLFLTATLSLASGAALAADSGAQTNNGQANAAADAGQVAPDARENVAPNNVDNNGVNTGSGGTMLHSDGSSMNNDGMTKDEEHKNTMCKDGRCPDINKKVQTGDGINNDVDTKTDGTTQ" [] ["CCO-PERI-BAC"] 0 [] {} 0 -"G6396-MONOMER" "multidrug efflux pump accessory protein AcrZ" ["AcrZ", "YbhT", "small membrane protein that interacts with the AcrAB-TolC multidrug efflux pump"] "MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQPGQNH" ["CCO-OUTER-MEM", "CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"G6396-MONOMER" "multidrug efflux pump accessory protein AcrZ" ["AcrZ", "YbhT"] "MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQPGQNH" ["CCO-OUTER-MEM", "CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6398-MONOMER" "putative DNA-binding transcriptional regulator YbhD" ["YbhD"] "MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHVQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6399-MONOMER" "putative isomerase YbhH" ["YbhH"] "MKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6401-MONOMER" "putative hydratase YbhJ" ["YbhJ"] "MIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEFTLSRRDPGYVSRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFNKNRQM" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 0 "G6402-MONOMER" "putative transferase YbhK" ["YbhK", "putative transferase with NAD(P)-binding Rossmann-fold domain"] "MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDNGGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLKALDHLSVRPLEAINLIRNLLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTPIQELLLTPNVPATREAVHAINEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMVYIGNLGRELSLPAANLKLESKLAIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVLEASDIPYRHDRQLLHNALEKALQALG" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6403-MONOMER" "Bax1-I family protein YbhL" ["YbhL"] "MDRFPRSDSIVQPRAGLQTYMAQVYGWMTVGLLLTAFVAWYAANSAAVMELLFTNRVFLIGLIIAQLALVIVLSAMIQKLSAGVTTMLFMLYSALTGLTLSSIFIVYTAASIASTFVVTAGMFGAMSLYGYTTKRDLSGFGNMLFMALIGIVLASLVNFWLKSEALMWAVTYIGVIVFVGLTAYDTQKLKNMGEQIDTRDTSNLRKYSILGALTLYLDFINLFLMLLRIFGNRR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6404-MONOMER" "Bax1-I family protein YbhM" ["YbhM"] "MESYSQNSNKLDFQHEARILNGIWLITALGLVATAGLAWGAKYIEITATKYDSPPMYVAIGLLLLCMYGLSKDINKINAAIAGVIYLFLLSLVAIVVASLVPVYAIIIVFSTAGAMFLISMLAGLLFNVDPGSHRFIIMMTLTGLALVIIVNAALMSERPIWIISCLMIVLWSGIISHGRNKLLELAGKCHSEELWSPVRCAFTGALTLYYYFIGFFGILAAIAITLVWQRHTRFFH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6405-MONOMER" "PF03706 family inner membrane protein YbhN" ["YbhN"] "MSKSHPRWRLAKKILTWLFFIAVIVLLVVYAKKVDWEEVWKVIRDYNRVALLSAVGLVVVSYLIYGCYDLLARFYCGHKLAKRQVMLVSFICYAFNLTLSTWVGGIGMRYRLYSRLGLPGSTITRIFSLSITTNWLGYILLAGIIFTAGVVELPDHWYVDQTTLRILGIGLLMIIAVYLWFCAFAKHRHMTIKGQKLVLPSWKFALAQMLISSVNWMVMGAIIWLLLGQSVNYFFVLGVLLVSSIAGVIVHIPAGIGVLEAVFIALLAGEHTSKGTIIAALLAYRVLYYFIPLLLALICYLLLESQAKKLRAKNEAAM" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6403-MONOMER" "Bax1-I family protein YbhL" ["YbhL"] "MDRFPRSDSIVQPRAGLQTYMAQVYGWMTVGLLLTAFVAWYAANSAAVMELLFTNRVFLIGLIIAQLALVIVLSAMIQKLSAGVTTMLFMLYSALTGLTLSSIFIVYTAASIASTFVVTAGMFGAMSLYGYTTKRDLSGFGNMLFMALIGIVLASLVNFWLKSEALMWAVTYIGVIVFVGLTAYDTQKLKNMGEQIDTRDTSNLRKYSILGALTLYLDFINLFLMLLRIFGNRR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6404-MONOMER" "Bax1-I family protein YbhM" ["YbhM"] "MESYSQNSNKLDFQHEARILNGIWLITALGLVATAGLAWGAKYIEITATKYDSPPMYVAIGLLLLCMYGLSKDINKINAAIAGVIYLFLLSLVAIVVASLVPVYAIIIVFSTAGAMFLISMLAGLLFNVDPGSHRFIIMMTLTGLALVIIVNAALMSERPIWIISCLMIVLWSGIISHGRNKLLELAGKCHSEELWSPVRCAFTGALTLYYYFIGFFGILAAIAITLVWQRHTRFFH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6405-MONOMER" "PF03706 family inner membrane protein YbhN" ["YbhN"] "MSKSHPRWRLAKKILTWLFFIAVIVLLVVYAKKVDWEEVWKVIRDYNRVALLSAVGLVVVSYLIYGCYDLLARFYCGHKLAKRQVMLVSFICYAFNLTLSTWVGGIGMRYRLYSRLGLPGSTITRIFSLSITTNWLGYILLAGIIFTAGVVELPDHWYVDQTTLRILGIGLLMIIAVYLWFCAFAKHRHMTIKGQKLVLPSWKFALAQMLISSVNWMVMGAIIWLLLGQSVNYFFVLGVLLVSSIAGVIVHIPAGIGVLEAVFIALLAGEHTSKGTIIAALLAYRVLYYFIPLLLALICYLLLESQAKKLRAKNEAAM" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6406-MONOMER" "cardiolipin synthase B" ["ClsB", "YbhO", "cardiolipin synthase 2"] "MKCSWREGNKIQLLENGEQYYPAVFKAIGEAQERIILETFIWFEDDVGKQLHAALLAAAQRGVKAEVLLDGYGSPDLSDEFVNELTAAGVVFRYYDPRPRLFGMRTNVFRRMHRKIVVIDARIAFIGGLNYSAEHMSSYGPEAKQDYAVRLEGPIVEDILQFELENLPGQSAARRWWRRHHKAEENRQPGEAQVLLVWRDNEEHRDDIERHYLKMLTQARREVIIANAYFFPGYRFLHALRKAARRGVRIKLIIQGEPDMPIVRVGARLLYNYLVKGGVQVFEYRRRPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANVIIHDRHFNQTLRDNLNGIIAADCQQVDETMLPKRTWWNLTKSVLAFHFLRHFPALVGWLPAHTPRLAQVDPPAQPTMETQDRVETENTGVKP" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL", "CCO-MEMBRANE"] 0 [] {} 0 "G6407-MONOMER" "endonuclease/exonuclease/phosphatase domain-containing protein YbhP" ["YbhP"] "MPDQTQQFSFKVLTINIHKGFTAFNRRFILPELRDAVRTVSADIVCLQEVMGAHEVHPLHVENWPDTSHYEFLADTMWSDFAYGRNAVYPEGHHGNAVLSRYPIEHYENRDVSVDGAEKRGVLYCRIVPPMTGKAIHVMCVHLGLREAHRQAQLAMLAEWVNELPDGEPVLVAGDFNDWRQKANHPLKVQAGLDEIFTRAHGRPARTFPVQFPLLRLDRIYVKNASASAPTALPLRTWRHLSDHAPLSAEIHL" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6408-MONOMER" "inner membrane protein YbhQ" ["YbhQ"] "MKWQQRVRVATGLSCWQIMLHLLVVALLVVGWMSKTLVHVGVGLCALYCVTVVMMLVFQRHPEQRWREVADVLEELTTTWYFGAALIVLWLLSRVLENNFLLAIAGLAILAGPAVVSLLAKDKKLHHLTSKHRVRR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6408-MONOMER" "inner membrane protein YbhQ" ["YbhQ"] "MKWQQRVRVATGLSCWQIMLHLLVVALLVVGWMSKTLVHVGVGLCALYCVTVVMMLVFQRHPEQRWREVADVLEELTTTWYFGAALIVLWLLSRVLENNFLLAIAGLAILAGPAVVSLLAKDKKLHHLTSKHRVRR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6412-MONOMER" "HlyD_D23 family protein YbhG" ["YbhG"] "MMKKPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLTLYGNVDIRTVNLSFRVGGRVESLAVDEGDAIKAGQVLGELDHKPYEIALMQAKAGVSVAQAQYDLMLAGYRNEEIAQAAAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLRQYRSGNREQDIAQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTRAVEPGTVLNEGGTVFTVSLTRPVWVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQIGFVSPTAEFTPKTVETPDLRTDLVYRLRIVVTDADDALRQGMPVTVQFGDEAGHE" ["CCO-PM-BAC-NEG"] ["CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6413-MONOMER" "PKHD-type hydroxylase YbiX" ["YbiX"] "MMYHIPGVLSPQDVARFREQLEQAEWVDGRVTTGAQGAQVKNNQQVDTRSTLYAALQNEVLNAVNQHALFFAAALPRTLSTPLFNRYQNNETYGFHVDGAVRSHPQNGWMRTDLSATLFLSDPQSYDGGELVVNDTFGQHRVKLPAGDLVLYPSSSLHCVTPVTRGVRVASFMWIQSMIRDDKKRAMLFELDNNIQSLKSRYGESEEILSLLNLYHNLLREWSEI" [] ["CCO-CYTOSOL"] 0 [] {"FE+2": 1} 0 -"G6414-MONOMER" "iron catecholate outer membrane transporter Fiu" ["Fiu", "YbiL", "TonB dependent iron catecholate transporter"] "MENNRNFPARQFHSLTFFAGLCIGITPVAQALAAEGQTNADDTLVVEASTPSLYAPQQSADPKFSRPVADTTRTMTVISEQVIKDQGATNLTDALKNVPGVGAFFAGENGNSTTGDAIYMRGADTSNSIYIDGIRDIGSVSRDTFNTEQVEVIKGPSGTDYGRSAPTGSINMISKQPRNDSGIDASASIGSAWFRRGTLDVNQVIGDTTAVRLNVMGEKTHDAGRDKVKNERYGVAPSVAFGLGTANRLYLNYLHVTQHNTPDGGIPTIGLPGYSAPSAGTAALNHSGKVDTHNFYGTDSDYDDSTTDTATMRFEHDINDNTTIRNTTRWSRVKQDYLMTAIMGGASNITQPTSDVNSWTWSRTANTKDVSNKILTNQTNLTSTFYTGSIGHDVSTGVEFTRETQTNYGVNPVTLPAVNIYHPDSSIHPGGLTRNGANANGQTDTFAIYAFDTLQITRDFELNGGIRLDNYHTEYDSATACGGSGRGAITCPTGVAKGSPVTTVDTAKSGNLMNWKAGALYHLTENGNVYINYAVSQQPPGGNNFALAQSGSGNSANRTDFKPQKANTSEIGTKWQVLDKRLLLTAALFRTDIENEVEQNDDGTYSQYGKKRVEGYEISVAGNITPAWQVIGGYTQQKATIKNGKDVAQDGSSSLPYTPEHAFTLWSQYQATDDISVGAGARYIGSMHKGSDGAVGTPAFTEGYWVADAKLGYRVNRNLDFQLNVYNLFDTDYVASINKSGYRYHPGEPRTFLLTANMHF" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 +"G6414-MONOMER" "Fe catecholate outer membrane transporter Fiu" ["Fiu", "YbiL", "TonB dependent iron catecholate transporter"] "MENNRNFPARQFHSLTFFAGLCIGITPVAQALAAEGQTNADDTLVVEASTPSLYAPQQSADPKFSRPVADTTRTMTVISEQVIKDQGATNLTDALKNVPGVGAFFAGENGNSTTGDAIYMRGADTSNSIYIDGIRDIGSVSRDTFNTEQVEVIKGPSGTDYGRSAPTGSINMISKQPRNDSGIDASASIGSAWFRRGTLDVNQVIGDTTAVRLNVMGEKTHDAGRDKVKNERYGVAPSVAFGLGTANRLYLNYLHVTQHNTPDGGIPTIGLPGYSAPSAGTAALNHSGKVDTHNFYGTDSDYDDSTTDTATMRFEHDINDNTTIRNTTRWSRVKQDYLMTAIMGGASNITQPTSDVNSWTWSRTANTKDVSNKILTNQTNLTSTFYTGSIGHDVSTGVEFTRETQTNYGVNPVTLPAVNIYHPDSSIHPGGLTRNGANANGQTDTFAIYAFDTLQITRDFELNGGIRLDNYHTEYDSATACGGSGRGAITCPTGVAKGSPVTTVDTAKSGNLMNWKAGALYHLTENGNVYINYAVSQQPPGGNNFALAQSGSGNSANRTDFKPQKANTSEIGTKWQVLDKRLLLTAALFRTDIENEVEQNDDGTYSQYGKKRVEGYEISVAGNITPAWQVIGGYTQQKATIKNGKDVAQDGSSSLPYTPEHAFTLWSQYQATDDISVGAGARYIGSMHKGSDGAVGTPAFTEGYWVADAKLGYRVNRNLDFQLNVYNLFDTDYVASINKSGYRYHPGEPRTFLLTANMHF" [] ["CCO-OUTER-MEM"] 0 [] {} 1 "G6415-MONOMER" "DUF1471 domain-containing protein McbA" ["YbiM", "McbA", "protein involved in colanic acid production"] "MKKCLTLLIATVLSGISLTAYAAQPMSNLDSGQLRPAGTVSATGASNLSDLEDKLAEKAREQGAKGYVINSAGGNDQMFGTATIYK" [] ["CCO-PERI-BAC"] 0 [] {} 0 "G6416-MONOMER" "23S rRNA m6A1618 methyltransferase" ["YbiN", "RlmF", "ribosomal RNA large subunit methyltransferase F"] "MSAQKPGLHPRNRHHSRYDLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAHFYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANASILDIGVGANCIYPLIGVHEYGWRFTGSETSSQALSSAQAIISSNPGLNRAIRLRRQKESGAIFNGIIHKNEQYDATLCNPPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVTFIKKMIEESKGFAKQVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFMNDEQRRRFVNRQR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6417-MONOMER" "moderate conductance mechanosensitive channel YbiO" ["YbiO"] "MRWILFILFCLLGAPAHAVSIPGVTTTTTTDSTTEPAPEPDIEQKKAAYGALADVLDNDTSRKELIDQLRTVAATPPAEPVPKIVPPTLVEEQTVLQKVTEVSRHYGEALSARFGQLYRNITGSPHKPFNPQTFSNALTHFSMLAVLVFGFYWLIRLCALPLYRKMGQWARQKNRERSNWLQLPAMIIGAFIIDLLLLALTLFVGQVLSDNLNAGSRTIAFQQSLFLNAFALIEFFKAVLRLIFCPNVAELRPFTIQDESARYWSRRLSWLSSLIGYGLIVAVPIISNQVNVQIGALANVIIMLCMTVWALYLIFRNKKEITQHLLNFAEHSLAFFSLFIRAFALVWHWLASAYFIVLFFFSLFDPGNSLKFMMGATVRSLAIIGIAAFVSGMFSRWLAKTITLSPHTQRNYPELQKRLNGWLSAALKTARILTVCVAVMLLLSAWGLFDFWNWLQNGAGQKTVDILIRIALILFFSAVGWTVLASLIENRLASDIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGIGSVVANYDVDRHEDADKANQALKDAVAELMENEEIRGLIIGEPNFAGIVGLSNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLAGVRAPVQTYQVLPAPGATPAEPLPPGEPTL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"G6418-MONOMER" null ["OpgE", "YbiP"] "MNLTLKESLVTRSRVFSPWTAFYFLQSLLINLGLGYPFSLLYTAAFTAILLLLWRTLPRVQKVLVGVSSLVAACYFPFAQAYGAPNFNTLLALHSTNMEESTEILTIFPWYSYLVGLFIFALGVIAIRRKKENEKARWNTFDSLCLVFSVATFFVAPVQNLAWGGVFKLKDTGYPVFRFAKDVIVNNNEVIEEQERMAKLSGMKDTWTVTAVKPKYQTYVVVIGESARRDALGAFGGHWDNTPFASSVNGLIFADYIAASGSTQKSLGLTLNRVVDGKPQFQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEVYFLKEGNFEADKNTKDEALLDMTAQVLAQEHSQPQLIVLHLMGSHPQACDRTQGKYETFVQSKETSCYLYTMTQTDDLLRKLYDQLRNSGSSFSLVYFSDHGLAFKERGKDVQYLAHDDKYQQNFQVPFMVISSDDKAHRVIKARRSANDFLGFFSQWTGIKAKEINIKYPFISEKKAGPIYITNFQLQKVDYNHLGTDIFDPKP" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6418-MONOMER" null ["OpgE", "YbiP"] "MNLTLKESLVTRSRVFSPWTAFYFLQSLLINLGLGYPFSLLYTAAFTAILLLLWRTLPRVQKVLVGVSSLVAACYFPFAQAYGAPNFNTLLALHSTNMEESTEILTIFPWYSYLVGLFIFALGVIAIRRKKENEKARWNTFDSLCLVFSVATFFVAPVQNLAWGGVFKLKDTGYPVFRFAKDVIVNNNEVIEEQERMAKLSGMKDTWTVTAVKPKYQTYVVVIGESARRDALGAFGGHWDNTPFASSVNGLIFADYIAASGSTQKSLGLTLNRVVDGKPQFQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEVYFLKEGNFEADKNTKDEALLDMTAQVLAQEHSQPQLIVLHLMGSHPQACDRTQGKYETFVQSKETSCYLYTMTQTDDLLRKLYDQLRNSGSSFSLVYFSDHGLAFKERGKDVQYLAHDDKYQQNFQVPFMVISSDDKAHRVIKARRSANDFLGFFSQWTGIKAKEINIKYPFISEKKAGPIYITNFQLQKVDYNHLGTDIFDPKP" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6420-MONOMER" "DNA-binding transcriptional dual regulator MntR" ["MntR", "YbiQ"] "MSRRAGTPTAKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQESRERHQIVENFLLVLGVSPEIARRDAEGMEHHVSEETLDAFRLFTQKHGAK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6421-MONOMER" "putative transporter YbiR" ["YbiR"] "MSLPFLRTLQGDRFFQLLILVGIGLSFFVPFAPKSWPAAIDWHTIITLSGLMLLTKGVELSGYFDVLGRKMVRRFATERRLAMFMVLAAALLSTFLTNDVALFIVVPLTITLKRLCEIPVNRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFIAQMAPLAGAMMLTLLLLCWCCFPGKAMQYHTGVQTPEWKPRLVWSCLGLYIVFLTALEFKQELWGLVIVAAGFALLARRVVLSVDWTLLLVFMAMFIDVHLLTQLPALQGVLGNVSHLSEPGLWLTAIGLSQVISNVPSTILLLNYVPPSLLLVWAVNVGGFGLLPGSLANLIALRMANDRRIWWRFHLYSIPMLLWAALVGYVLLVILPAN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6422-MONOMER" "L,D-transpeptidase LdtB" ["LdtB", "YbiS"] "MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVITIPEGNTQPLEYFAAEYQMGLSNMMEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFEKVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKSVQTVTGQPDVDQVVLDEAIKNRSGMPVRLN" ["CCO-PERI-BAC"] ["CCO-EXTRACELLULAR", "CCO-PERI-BAC"] 0 [] {} 0 +"G6422-MONOMER" "L,D-transpeptidase LdtB" ["LdtB", "YbiS"] "MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVITIPEGNTQPLEYFAAEYQMGLSNMMEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFEKVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKSVQTVTGQPDVDQVVLDEAIKNRSGMPVRLN" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 "G6423-MONOMER" "putative ATP-binding protein YbiT" ["YbiT"] "MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEVKASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTVKWSENARIGYYAQDHEYEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRILEITPERVIDFSGNYEDYLRSKGIE" [] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6424-MONOMER" "DUF1479 domain-containing protein YbiU" ["YbiU"] "MASTFTSDTLPADHKAAIRQMKHALRAQLGDVQQIFNQLSDDIATRVAEINALKAQGDAVWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGWDQSMLDYLDRNRFDEVYKGPGDNFFGTLSASRPEIYPIYWSQAQMQARQSEEMANAQSFLNRLWTFESDGKQWFNPDVSVIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQRVFANVFNGNLAQYDPWHAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEAMAYVLLRPLLDDVPEDELCGVAPGRVLPVSEQWHPLLIEALTSIPKLEAGDSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYAHKVKAALEKGASPGDFPREDYETNWEGRFTLADLNIHGKRALGMDV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6425-MONOMER" "sugar phosphatase YbiV" ["YbiV", "HAD12"] "MSVKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTSPFNS" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "G6426-MONOMER" "putative pyruvate formate lyase" ["YbiW", "PflF"] "MTTLKLDTLSDRIKAHKNALVHIVKPPVCTERAQHYTEMYQQHLDKPIPVRRALALAHHLANRTIWIKHDELIIGNQASEVRAAPIFPEYTVSWIEKEIDDLADRPGAGFAVSEENKRVLHEVCPWWRGQTVQDRCYGMFTDEQKGLLATGIIKAEGNMTSGDAHLAVNFPLLLEKGLDGLREEVAERRSRINLTVLEDLHGEQFLKAIDIVLVAVSEHIERFAALAREMAATETRESRRDELLAMAENCDLIAHQPPQTFWQALQLCYFIQLILQIESNGHSVSFGRMDQYLYPYYRRDVELNQTLDREHAIEMLHSCWLKLLEVNKIRSGSHSKASAGSPLYQNVTIGGQNLVDGQPMDAVNPLSYAILESCGRLRSTQPNLSVRYHAGMSNDFLDACVQVIRCGFGMPAFNNDEIVIPEFIKLGIEPQDAYDYAAIGCIETAVGGKWGYRCTGMSFINFARVMLAALEGGHDATSGKVFLPQEKALSAGNFNNFDEVMDAWDTQIRYYTRKSIEIEYVVDTMLEENVHDILCSALVDDCIERAKSIKQGGAKYDWVSGLQVGIANLGNSLAAVKKLVFEQGAIGQQQLAAALADDFDGLTHEQLRQRLINGAPKYGNDDDTVDTLLARAYQTYIDELKQYHNPRYGRGPVGGNYYAGTSSISANVPFGAQTMATPDGRKAHTPLAEGASPASGTDHLGPTAVIGSVGKLPTAAILGGVLLNQKLNPATLENESDKQKLMILLRTFFEVHKGWHIQYNIVSRETLLDAKKHPDQYRDLVVRVAGYSAFFTALSPDAQDDIIARTEHML" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6427-MONOMER" "putative pyruvate formate-lyase activating enzyme YbiY" ["YbiY", "PflE"] "MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARTQDLLYDARLCLEGCELCAKAAPEVIERALNGLLIHREKLTPEHLTALTDCCPTQALTVCGEVKSVEEIMTTVLRDKPFYDRSGGGLTLSGGEPFMQPEMAMALLQASHEAGIHTAVETCLHVPWKYIAPSLPYIDLFLADLKHVADAPFKQWTDGNAARVLDNLKKLAAAGKKIIIRVPLIQGFNADETSVKAITDFAADELHVGEIHFLPYHTLGINKYHLLNLPYDAPEKPLDAPELLDFAQQYACQKGLTATLRG" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 0 "G6428-MONOMER" "fructose-6-phosphate aldolase 1" ["YbiZ", "FsaA", "MipB", "Fsa"] "MELYLDTSDVVAVKALSRIFPLAGVTTNPSIIAAGKKPLDVVLPQLHEAMGGQGRLFAQVMATTAEGMVNDALKLRSIIADIVVKVPVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLHQLLKMHAPQAKVLAASFKTPRQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQDWQGAFGRTSI" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G6433-MONOMER" "putative cyclic di-GMP phosphodiesterase PdeI" ["PdeI", "YliE"] "MLSLYEKIKIRLIILFLLAALSFIGLFFIINYQLVSERAVKRADSRFELIQKNVGYFFKDIERSALTLKDSLYLLKNTEEIQRAVILKMEMMPFLDSVGLVLDDNKYYLFSRRANDKIVVYHQEQVNGPLVDESGRVIFADFNPSKRPWSVASDDSNNSWNPAYNCFDRPGKKCISFTLHINGKDHDLLAVDKIHVDLNWRYLNEYLDQISANDEVLFLKQGHEIIAKNQLAREKLIIYNSEGNYNIIDSVDTEYIEKTSAVPNNALFEIYFYYPGGNLLNASDKLFYLPFAFIIIVLLVVYLMTTRVFRRQFSEMTELVNTLAFLPDSTDQIEALKIREGDAKEIISIKNSIAEMKDAEIERSNKLLSLISYDQESGFIKNMAIIESNNNQYLAVGIIKLCGLEAVEAVFGVDERNKIVRKLCQRIAEKYAQCCDIVTFNADLYLLLCRENVQTFTRKIAMVNDFDSSFGYRNLRIHKSAICEPLQGENAWSYAEKLKLAISSIRDHMFSEFIFCDDAKLNEIEENIWIARNIRHAMEIGELFLVYQPIVDINTRAILGAEALCRWVSAERGIISPLKFITIAEDIGFINELGYQIIKTAMGEFRHFSQRASLKDDFLLHINVSPWQLNEPHFHERFTTIMKENGLKANSLCVEITETVIERINEHFYLNIEQLRKQGVRISIDDFGTGLSNLKRFYEINPDSIKVDSQFTGDIFGTAGKIVRIIFDLARYNRIPVIAEGVESEDVARELIKLGCVQAQGYLYQKPMPFSAWDKSGKLVKE" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6434-MONOMER" "putative diguanylate cyclase DgcI" ["DgcI", "YliF"] "MSRINKFVLTVSLLIFIMISAVACGIYTQMVKERVYSLKQSVIDTAFAVANIAEYRRSVAIDLINTLNPTEEQLLVGLRTAYADSVSPSYLYDVGPYLISSDECIQVKEFEKNYCADIMQVVKYRHVKNTGFISFDGKTFVYYLYPVTHNRSLIFLLGLERFSLLSKSLAMDSENLMFSLFKNGKPVTGDEYNAKNAIFTVSEAMEHFAYLPTGLYVFAYKKDVYLRVCTLIIFFAALVAVISGASCLYLVRRVINRGIVEKEAIINNHFERVLDGGLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINDTFGHLLGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSINLSTSIGVAHSNECPTVERLKMLADERLYKSKKNGRAQISWQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 0 +"G6433-MONOMER" "putative cyclic di-GMP phosphodiesterase PdeI" ["PdeI", "YliE"] "MLSLYEKIKIRLIILFLLAALSFIGLFFIINYQLVSERAVKRADSRFELIQKNVGYFFKDIERSALTLKDSLYLLKNTEEIQRAVILKMEMMPFLDSVGLVLDDNKYYLFSRRANDKIVVYHQEQVNGPLVDESGRVIFADFNPSKRPWSVASDDSNNSWNPAYNCFDRPGKKCISFTLHINGKDHDLLAVDKIHVDLNWRYLNEYLDQISANDEVLFLKQGHEIIAKNQLAREKLIIYNSEGNYNIIDSVDTEYIEKTSAVPNNALFEIYFYYPGGNLLNASDKLFYLPFAFIIIVLLVVYLMTTRVFRRQFSEMTELVNTLAFLPDSTDQIEALKIREGDAKEIISIKNSIAEMKDAEIERSNKLLSLISYDQESGFIKNMAIIESNNNQYLAVGIIKLCGLEAVEAVFGVDERNKIVRKLCQRIAEKYAQCCDIVTFNADLYLLLCRENVQTFTRKIAMVNDFDSSFGYRNLRIHKSAICEPLQGENAWSYAEKLKLAISSIRDHMFSEFIFCDDAKLNEIEENIWIARNIRHAMEIGELFLVYQPIVDINTRAILGAEALCRWVSAERGIISPLKFITIAEDIGFINELGYQIIKTAMGEFRHFSQRASLKDDFLLHINVSPWQLNEPHFHERFTTIMKENGLKANSLCVEITETVIERINEHFYLNIEQLRKQGVRISIDDFGTGLSNLKRFYEINPDSIKVDSQFTGDIFGTAGKIVRIIFDLARYNRIPVIAEGVESEDVARELIKLGCVQAQGYLYQKPMPFSAWDKSGKLVKE" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6434-MONOMER" "putative diguanylate cyclase DgcI" ["DgcI", "YliF"] "MSRINKFVLTVSLLIFIMISAVACGIYTQMVKERVYSLKQSVIDTAFAVANIAEYRRSVAIDLINTLNPTEEQLLVGLRTAYADSVSPSYLYDVGPYLISSDECIQVKEFEKNYCADIMQVVKYRHVKNTGFISFDGKTFVYYLYPVTHNRSLIFLLGLERFSLLSKSLAMDSENLMFSLFKNGKPVTGDEYNAKNAIFTVSEAMEHFAYLPTGLYVFAYKKDVYLRVCTLIIFFAALVAVISGASCLYLVRRVINRGIVEKEAIINNHFERVLDGGLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINDTFGHLLGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSINLSTSIGVAHSNECPTVERLKMLADERLYKSKKNGRAQISWQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 0 "G6435-MONOMER" "ribosomal protein S12 methylthiotransferase RimO" ["YliG", "RimO"] "MSKVTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEAIGEALNENGKVIVTGCLGAKEDQIREVHPKVLEITGPHSYEQVLEHVHHYVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKLGIWTRLHYVYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAIGRSMADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 2} 0 "G6436-MONOMER" "regulator of biofilm formation" ["YliH", "BssR"] "MFVDRQRIDLLNRLIDARVDLAAYVQLRKAKGYMSVSESNHLRDNFFKLNRELHDKSLRLNLHLDQEEWSALHHAEEALATAAVCLMSGHHDCPTVITVNADKLENCLMSLTLSIQSLQKHAMLEKA" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6437-MONOMER" "aldose sugar dehydrogenase YliI" ["YliI"] "MHRQSFFLVPLICLSSALWAAPATVNVEVLQDKLDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGARAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKVSPRN" ["CCO-PERI-BAC"] ["CCO-MEMBRANE", "CCO-OUTER-MEM", "CCO-PERI-BAC"] 0 [] {"CA+2": 1} 0 +"G6437-MONOMER" "aldose sugar dehydrogenase YliI" ["YliI"] "MHRQSFFLVPLICLSSALWAAPATVNVEVLQDKLDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGARAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKVSPRN" ["CCO-PERI-BAC"] ["CCO-OUTER-MEM", "CCO-PERI-BAC"] 0 [] {"CA+2": 1} 0 "G6438-MONOMER" "glutathione S-transferase GstB" ["GstB", "YliJ"] "MITLWGRNNSTNVKKVLLTLEELELPYEQILAGREFGINHDADFLAMNPNGLVPLLRDDESDLILWESNAIVRYLAAQYGQKRLWIDSPARRAEAEKWMDWANQTLSNAHRGILMGLVRTPPEERDQAAIDASCKECDALFALLDAELAKVKWFSGDEFGVGDIAIAPFIYNLFNVGLTWTPRPNLQRWYQQLTERPAVRKVVMIPVS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6439-MONOMER" "undecaprenyl pyrophosphate phosphatase" ["YbjG", "BcrCEC"] "MLENLNLSLFSLINATPDSAPWMISLAIFIAKDLITVVPLLAVVLWLWGLTAQRQLVIKIAIALAVSLFVSWTMGHLFPHDRPFVENIGYNFLHHAADDSFPSDHGTVIFTFALAFLCWHRLWSGSLLMVLAVVIAWSRVYLGVHWPLDMLGGLLAGMIGCLSAQIIWQAMGHKLYQRLQSWYRVCFALPIRKGWVRD" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6439-MONOMER" "undecaprenyl pyrophosphate phosphatase" ["YbjG", "BcrCEC"] "MLENLNLSLFSLINATPDSAPWMISLAIFIAKDLITVVPLLAVVLWLWGLTAQRQLVIKIAIALAVSLFVSWTMGHLFPHDRPFVENIGYNFLHHAADDSFPSDHGTVIFTFALAFLCWHRLWSGSLLMVLAVVIAWSRVYLGVHWPLDMLGGLLAGMIGCLSAQIIWQAMGHKLYQRLQSWYRVCFALPIRKGWVRD" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6441-MONOMER" "uncharacterized protein YbjH" ["YbjH"] "MIMKNCLLLGALLMGFTGVAMAQSVTVDVPSGYKVVVVPDSVSVPQAVSVATVPQTVYVAPAPAPAYRPHPYVRHLASVGEGMVIEHQIDDHHH" [] ["CCO-MEMBRANE"] 0 [] {} 0 "G6442-MONOMER" "5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase" ["YbjI"] "MSIKLIAVDMDGTFLSDQKTYNRERFMAQYQQMKAQGIRFVVASGNQYYQLISFFPEIANEIAFVAENGGWVVSEGKDVFNGELSKDAFATVVEHLLTRPEVEIIACGKNSAYTLKKYDDAMKTVAEMYYHRLEYVDNFDNLEDIFFKFGLNLSDELIPQVQKALHEAIGDIMVSVHTGNGSIDLIIPGVHKANGLRQLQKLWGIDDSEVVVFGDGGNDIEMLRQAGFSFAMENAGSAVVAAAKYRAGSNNREGVLDVIDKVLKHEAPFDQ" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "G6443-MONOMER" "inner membrane protein YbjJ" ["YbjJ"] "MTVNSSRNALKRRTWALFMFFFLPGLLMASWATRTPAIRDILSVSIAEMGGVLFGLSIGSMSGILCSAWLVKRFGTRNVILVTMSCALIGMMILSLALWLTSPLLFAVGLGVFGASFGSAEVAINVEGAAVEREMNKTVLPMMHGFYSLGTLAGAGVGMALTAFGVPATVHILLAALVGIAPIYIAIQAIPDGTGKNAADGTQHGEKGVPFYRDIQLLLIGVVVLAMAFAEGSANDWLPLLMVDGHGFSPTSGSLIYAGFTLGMTVGRFTGGWFIDRYSRVAVVRASALMGALGIGLIIFVDSAWVAGVSVVLWGLGASLGFPLTISAASDTGPDAPTRVSVVATTGYLAFLVGPPLLGYLGEHYGLRSAMLVVLALVILAAIVAKAVAKPDTKTQTAMENS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6444-MONOMER" "RcdA" ["YbjK"] "MRRANDPQRREKIIQATLEAVKLYGIHAVTHRKIATLAGVPLGSMTYYFSGIDELLLEAFSSFTEIMSRQYQAFFSDVSDAPGACQAITDMIYSSQVATPDNMELMYQLYALASRKPLLKTVMQNWMQRSQQTLEQWFEPGTARALDAFIEGMTLHFVTDRKPLSREEILRMVERVAG" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G6445-MONOMER" "putative transport protein YbjL" ["YbjL", "inner membrane protein YbjL"] "MNINVAELLNGNYILLLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGMESRQLSLALDNLSLGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAYRVGPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYPDAHARLDPSFRNGKEVFDRDLLDMRIVTEEVVVKNHNAVGKRLAQLKLTDHGCFLNRVIRSQIEMPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFVIGLMIGMITFQFSTFSFGMGNAAGLLFAGIMLGFMRANHPTFGYIPQGALSMVKEFGLMVFMAGVGLSAGSGINNGLGAIGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRALLFGAMMGARTCAPAMEIISDTARSNIPALGYAGTYAIANVLLTLAGTIIVMVWPGLG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6444-MONOMER" "DNA binding transcriptional dual regulator RcdA" ["YbjK"] "MRRANDPQRREKIIQATLEAVKLYGIHAVTHRKIATLAGVPLGSMTYYFSGIDELLLEAFSSFTEIMSRQYQAFFSDVSDAPGACQAITDMIYSSQVATPDNMELMYQLYALASRKPLLKTVMQNWMQRSQQTLEQWFEPGTARALDAFIEGMTLHFVTDRKPLSREEILRMVERVAG" [] ["CCO-CYTOSOL"] 0 [] {} 1 +"G6445-MONOMER" "putative transport protein YbjL" ["YbjL", "inner membrane protein YbjL"] "MNINVAELLNGNYILLLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGMESRQLSLALDNLSLGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAYRVGPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYPDAHARLDPSFRNGKEVFDRDLLDMRIVTEEVVVKNHNAVGKRLAQLKLTDHGCFLNRVIRSQIEMPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFVIGLMIGMITFQFSTFSFGMGNAAGLLFAGIMLGFMRANHPTFGYIPQGALSMVKEFGLMVFMAGVGLSAGSGINNGLGAIGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRALLFGAMMGARTCAPAMEIISDTARSNIPALGYAGTYAIANVLLTLAGTIIVMVWPGLG" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6446-MONOMER" "putative inner membrane protein" ["YbjM"] "MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLFFILPGAVASFFSQRREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSLFKPQHRKNQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6447-MONOMER" "protein YbjN" ["YbjN"] "MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAMAEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFVRQSEEQISMVILEANAHQLLLPTDDEGQNNVTENYFLH" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 -"G6448-MONOMER" "putative inner membrane protein" ["YbjO"] "MEDETLGFFKKTSSSHARLNVPALVQVAALAIIMIRGLDVLMIFNTLGVRGIGEFIHRSVQTWSLTLVFLSSLVLVFIEIWCAFSLVKGRRWARWLYLLTQITAASYLWAASLGYGYPELFSIPGESKREIFHSLMLQKLPDMLILMLLFVPSTSRRFFQLQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6448-MONOMER" "putative inner membrane protein" ["YbjO"] "MEDETLGFFKKTSSSHARLNVPALVQVAALAIIMIRGLDVLMIFNTLGVRGIGEFIHRSVQTWSLTLVFLSSLVLVFIEIWCAFSLVKGRRWARWLYLLTQITAASYLWAASLGYGYPELFSIPGESKREIFHSLMLQKLPDMLILMLLFVPSTSRRFFQLQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6449-MONOMER" "23S rRNA m5U747 methyltransferase" ["YbjF", "RumB", "RlmC"] "MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTLLVKQ" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 0 -"G6450-MONOMER" "DUF3828 domain-containing lipoprotein YbjP" ["YbjP"] "MRYSKLTMLIPCALLLSACTTVTPAYKDNGTRSGPCVEGGPDNVAQQFYDYRILHRSNDITALRPYLSDKLATLLSDASRDNNHRELLTNDPFSSRTTLPDSAHVASASTIPNRDARNIPLRVDLKQGDQGWQDEVLMIQEGQCWVIDDVRYLGGSVHATAGTLRQSIENR" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"G6450-MONOMER" "DUF3828 domain-containing lipoprotein YbjP" ["YbjP"] "MRYSKLTMLIPCALLLSACTTVTPAYKDNGTRSGPCVEGGPDNVAQQFYDYRILHRSNDITALRPYLSDKLATLLSDASRDNNHRELLTNDPFSSRTTLPDSAHVASASTIPNRDARNIPLRVDLKQGDQGWQDEVLMIQEGQCWVIDDVRYLGGSVHATAGTLRQSIENR" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6451-MONOMER" "putative heavy metal binding protein YbjQ" ["YbjQ"] "MQFSTTPTLEGQTIVEYCGVVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREIAFEELGSQARALGADAVVGIDIDYETVGQNGSMLMVSVSGTAVKTRR" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6452-MONOMER" "N-acetylmuramoyl-L-alanine amidase D" ["YbjR", "AmiD"] "MRRFFWLVAAALLLAGCAGEKGIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSLATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGEADAETQAIAEALLEKYGQD" ["CCO-MEMBRANE"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {"ZN+2": 1} 0 "G6453-MONOMER" "putative epimerase YbjS" ["YbjS", "putative NAD(P)H-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain"] "MKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFVPADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMLSQANPQTRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPSGRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLTHYGVSKLNFDFTLDITRAQEELGYQPVITLDEGIEKTAAWLRDHGKLPR" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6454-MONOMER" "putative NAD(P)-binding protein YbjT" ["YbjT", "putative NAD(P)-dependent oxidoreductase YbjT"] "MPQRILVLGASGYIGQHLVRTLSQQGHQILAAARHVDRLAKLQLANVSCHKVDLSWPDNLPALLQDIDTVYFLVHSMGEGGDFIAQERQVALNVRDALREVPVKQLIFLSSLQAPPHEQSDHLRARQATADILREANVPVTELRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPASEHRIFEAAGPEVLSYQQQFEHFMAVSGKRRWLIPIPLPTRWISVWFLNVITSVPPTTARALIQGLKHDLLADDTALRALIPQRLIAFDDAVRSTLKEEEKLVNSSDWGYDAQAFARWRPEYGYFAKQAGFTVKTSASLAALWQVVNQIGGKERYFFGNILWQTRALMDRAIGHKLAKGRPEREYLQTGDAVDSWKVIVVEPEKQLTLLFGMKAPGLGRLCFSLEDKGDYRTIDVRAFWHPHGMPGLFYWLLMIPAHLFIFRGMAKQIARLAEQSTD" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6454-MONOMER" "putative NAD(P)-binding protein YbjT" ["YbjT", "putative NAD(P)-dependent oxidoreductase YbjT"] "MPQRILVLGASGYIGQHLVRTLSQQGHQILAAARHVDRLAKLQLANVSCHKVDLSWPDNLPALLQDIDTVYFLVHSMGEGGDFIAQERQVALNVRDALREVPVKQLIFLSSLQAPPHEQSDHLRARQATADILREANVPVTELRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPASEHRIFEAAGPEVLSYQQQFEHFMAVSGKRRWLIPIPLPTRWISVWFLNVITSVPPTTARALIQGLKHDLLADDTALRALIPQRLIAFDDAVRSTLKEEEKLVNSSDWGYDAQAFARWRPEYGYFAKQAGFTVKTSASLAALWQVVNQIGGKERYFFGNILWQTRALMDRAIGHKLAKGRPEREYLQTGDAVDSWKVIVVEPEKQLTLLFGMKAPGLGRLCFSLEDKGDYRTIDVRAFWHPHGMPGLFYWLLMIPAHLFIFRGMAKQIARLAEQSTD" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6456-MONOMER" null ["YbjV", "Hcr"] "MTMPTNQCPWRMQVHHITQETPDVWTISLICHDYYPYRAGQYALVSVRNSAETLRAYTISSTPGVSEYITLTVRRIDDGVGSQWLTRDVKRGDYLWLSDAMGEFTCDDKAEDKFLLLAAGCGVTPIMSMRRWLAKNRPQADVRVIYNVRTPQDVIFADEWRNYPVTLVAENNVTEGFIAGRLTRELLAGVPDLASRTVMTCGPAPYMDWVEQEVKALGVTRFFKEKFFTPVAEAATSGLKFTKLQPAREFYAPVGTTLLEALESNNVPVVAACRAGVCGCCKTKVVSGEYTVSSTMTLTDAEIAEGYVLACSCHPQGDLVLA" [] ["CCO-CYTOSOL"] 0 [] {"CPD-6": 1} 0 "G6457-MONOMER" "protein S-nitrosylase" ["Hcp", "YbjW", "PriS", "fuscoredoxin", "prismane protein", "hybrid-cluster protein", "nitric oxide reductase"] "MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGDDFSAVITQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA" [] ["CCO-CYTOSOL"] 0 [] {"CPD-6": 1, "4Fe-2O-2S-Cluster": 1} 0 -"G6458-MONOMER" "L-lysine/thialysine exporter" ["LysO", "YbjE"] "MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6458-MONOMER" "L-lysine/thialysine exporter" ["LysO", "YbjE"] "MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6459-MONOMER" "DUF2813 domain-containing protein YbjD" ["YbjD", "conserved protein with a nucleotide triphosphate hydrolase domain YbjD"] "MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRMAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6460-MONOMER" "DUF535 domain-containing protein YbjX" ["YbjX"] "MVKSTPCITIDFMNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRECMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG" [] [] 0 [] {} 0 "G6463-MONOMER" "specificity factor for ClpA-ClpP chaperone-protease complex" ["ClpS", "YljA"] "MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6464-MONOMER" "cell division DNA translocase FtsK" ["DinH", "FtsK", "essential cell division protein FtsK"] "MSQEYIEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVPPQPQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAPQQQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6464-MONOMER" "cell division DNA translocase FtsK" ["DinH", "FtsK", "essential cell division protein FtsK"] "MSQEYIEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVPPQPQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAPQQQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6465-MONOMER" "outer membrane lipoprotein carrier protein" ["YzzV", "LplA", "LolA", "p20"] "MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 "G6467-MONOMER" "putative DNA-binding transcriptional regulator YcaN" ["YcaN"] "MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLTEAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMSLLVGFTREYPDIKVELTTDDSLVDIVQQGFDAGVRLSCIVEKDMISVAIGPPVKLCVAATPEYFARYGKPRHPHDLLNHQCVVFRYPSGKPFHWQFAKELEIAVAGNIILDDVDAELEAVLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIYYPNRQYMSCGLRAFLDYVKTGQICQSQRHRPQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6468-MONOMER" "ribosomal protein S12 methylthiotransferase accessory factor YcaO" ["YcaO", "protein involved in β-methylthiolation of ribosomal protein S12"] "MTQTFIPGKDAALEDSIARFQQKLSDLGFQIEEASWLNPVPNVWSVHIRDKECALCFTNGKGATKKAALASALGEYFERLSTNYFFADFWLGETIANGPFVHYPNEKWFPLTENDDVPEGLLDDRLRAFYDPENELTGSMLIDLQSGNEDRGICGLPFTRQSDNQTVYIPMNIIGNLYVSNGMSAGNTRNEARVQGLSEVFERYVKNRIIAESISLPEIPADVLARYPAVVEAIETLEAEGFPIFAYDGSLGGQYPVICVVLFNPANGTCFASFGAHPDFGVALERTVTELLQGRGLKDLDVFTPPTFDDEEVAEHTNLETHFIDSSGLISWDLFKQDADYPFVDWNFSGTTEEEFATLMAIFNKEDKEVYIADYEHLGVYACRIIVPGMSDIYPAEDLWLANNSMGSHLRETILSLPGSEWEKEDYLNLIEQLDEEGFDDFTRVRELLGLATGSDNGWYTLRIGELKAMLALAGGDLEQALVWTEWTMEFNSSVFSPERANYYRCLQTLLLLAQEEDRQPLQYLNAFVRMYGADAVEAASAAMSGEAAFYGLQPVDSDLHAFAAHQSLLKAYEKLQRAKAAFWAK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6469-MONOMER" "DUF421 domain-containing protein YcaP" ["YcaP"] "MKAFDLHRMAFDKVPFDFLGEVALRSLYTFVLVFLFLKMTGRRGVRQMSLFEVLIILTLGSAAGDVAFYDDVPMVPVLIVFITLALLYRLVMWLMAHSEKLEDLLEGKPVVIIEDGELAWSKLNNSNMTEFEFFMELRLRGVEQLGQVRLAILETNGQISVYFFEDDKVKPGLLILPSDCTQRYKVVPESADYACIRCSEIIHMKAGEKQLCPRCANPEWTKASRAKRVT" [] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"G6469-MONOMER" "DUF421 domain-containing protein YcaP" ["YcaP"] "MKAFDLHRMAFDKVPFDFLGEVALRSLYTFVLVFLFLKMTGRRGVRQMSLFEVLIILTLGSAAGDVAFYDDVPMVPVLIVFITLALLYRLVMWLMAHSEKLEDLLEGKPVVIIEDGELAWSKLNNSNMTEFEFFMELRLRGVEQLGQVRLAILETNGQISVYFFEDDKVKPGLLILPSDCTQRYKVVPESADYACIRCSEIIHMKAGEKQLCPRCANPEWTKASRAKRVT" [] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6470-MONOMER" "periplasmic protease YcaL" ["YcaL"] "MKNTKLLLAIATSAALLTGCQNTHGIDTNMAISSGLNAYKAATLSDADAKAIANQGCAEMDSGNQVASKSSKYGKRLAKIAKALGNNINGTPVNYKVYMTSDVNAWAMANGCVRVYSGLMDMMNDNEIEGVLGHELGHVALGHSLAEMKASYAIVAARDAISATSGVASQLSRSQLGDIAEGAINAKYSRDKESEADDFSFDLLKKRGISTQGLVGSFETLASLDGGRTQSMFDSHPPSTERAQHIRDRIASGK" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-EXTRACELLULAR"] 0 [] {"ZN+2": 1} 0 "G6471-MONOMER" "interstrand DNA crosslink repair glycosylase" ["AlkZ", "YcaQ"] "MSLPHLSLADARNLHLAAQGLLNKPRRRASLEDIPATISRMSLLQIDTINIVARSPYLVLFSRLGNYPAQWLDESLARGELMEYWAHEACFMPRSDFRLIRHRMLAPEKMGWKYKDAWMQEHEAEIAQLIQHIHDKGPVRSADFEHPRKGASGWWEWKPHKRHLEGLFTAGKVMVIERRNFQRVYDLTHRVMPDWDDERDLVSQTEAEIIMLDNSARSLGIFREQWLADYYRLKRPALAAWREARAEQQQIIAVHVEKLGNLWLHDDLLPLLERALAGKLTATHSAVLSPFDPVVWDRKRAEQLFDFSYRLECYTPAPKRQYGYFVLPLLHRGQLVGRMDAKMHRQTGILEVISLWLQEGIKPTTTLQKGLRQAITDFANWQQATRVTLGCCPQGLFTDCRTGWEIDPVA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6472-MONOMER" "PF03966 family protein YcaR" ["YcaR", "UPF0434 family protein YcaR"] "MDHRLLEIIACPVCNGKLWYNQEKQELICKLDNLAFPLRDGIPVLLETEARVLTADESKS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -2092,83 +2092,83 @@ "G6486-MONOMER" "cell division protein ZapC" ["ZapC", "YcbW"] "MRIKPDDNWRWYYDEEHDRMMLDLANGMLFRSRFARKMLTPDAFSPAGFCVDDAALYFSFEEKCRDFNLSKEQKAELVLNALVAIRYLKPQMPKSWHFVSHGEMWVPMPGDAACVWLSDTHEQVNLLVVESGENAALCLLAQPCVVIAGRAMQLGDAIKIMNDRLKPQVNVDSFSLEQAV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6487-MONOMER" "6-N-hydroxylaminopurine resistance protein" ["YcbX", "protein involved in base analog detoxification", "6-hydroxyaminopurine reductase"] "MATLIRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPSPVHDGLHLTAPDGSSAYVRFADFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQRCPASVKMEQFRPNLVVSGASAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGDVDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAAAADDTANITQQPDANVDIDWQGQAFRGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGDDGTILCCSCVPKTALKLAR" [] ["CCO-PERI-BAC"] 0 [] {} 1 "G6488-MONOMER" "fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase" ["RlmK", "YcbY", "RlmL", "RlmKL", "ribosomal RNA large subunit methyltransferase L"] "MNSLFASTARGLEELLKTELENLGAVECQVVQGGVHFKGDTRLVYQSLMWSRLASRIMLPLGECKVYSDLDLYLGVQAINWTEMFNPGATFAVHFSGLNDTIRNSQYGAMKVKDAIVDAFTRKNLPRPNVDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSASPDLLSCLQLRADKQYKAKNGPLDCVQKNYHVAESTPDSKPAMVAEDYTNRLRKNLKKFEKWARQEGIECYRLYDADLPEYNVAVDRYADWVVVQEYAPPKTIDAHKARQRLFDIIAATISVLGIAPNKLVLKTRERQKGKNQYQKLGEKGEFLEVTEYNAHLWVNLTDYLDTGLFLDHRIARRMLGQMSKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEITQKTLSQDFARNRQIHNCWLITAA" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6490-MONOMER" "intermembrane transport protein PqiA" ["PqiA"] "MCEHHHAAKHILCSQCDMLVALPRLEHGQKAACPRCGTTLTVAWDAPRQRPTAYALAALFMLLLSNLFPFVNMNVAGVTSEITLLEIPGVLFSEDYASLGTFFLLFVQLVPAFCLITILLLVNRAELPVRLKEQLARVLFQLKTWGMAEIFLAGVLVSFVKLMAYGSIGVGSSFLPWCLFCVLQLRAFQCVDRRWLWDDIAPMPELRQPLKPGVTGIRQGLRSCSCCTAILPADEPVCPRCSTKGYVRRRNSLQWTLALLVTSIMLYLPANILPIMVTDLLGSKMPSTILAGVILLWSEGSYPVAAVIFLASIMVPTLKMIAIAWLCWDAKGHGKRDSERMHLIYEVVEFVGRWSMIDVFVIAVLSALVRMGGLMSIYPAMGALMFALVVIMTMFSAMTFDPRLSWDRQPESEHEES" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"G6490-MONOMER" "intermembrane transport protein PqiA" ["PqiA"] "MCEHHHAAKHILCSQCDMLVALPRLEHGQKAACPRCGTTLTVAWDAPRQRPTAYALAALFMLLLSNLFPFVNMNVAGVTSEITLLEIPGVLFSEDYASLGTFFLLFVQLVPAFCLITILLLVNRAELPVRLKEQLARVLFQLKTWGMAEIFLAGVLVSFVKLMAYGSIGVGSSFLPWCLFCVLQLRAFQCVDRRWLWDDIAPMPELRQPLKPGVTGIRQGLRSCSCCTAILPADEPVCPRCSTKGYVRRRNSLQWTLALLVTSIMLYLPANILPIMVTDLLGSKMPSTILAGVILLWSEGSYPVAAVIFLASIMVPTLKMIAIAWLCWDAKGHGKRDSERMHLIYEVVEFVGRWSMIDVFVIAVLSALVRMGGLMSIYPAMGALMFALVVIMTMFSAMTFDPRLSWDRQPESEHEES" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6491-MONOMER" "intermembrane transport protein PqiB" ["PqiB"] "MESNNGEAKIQKVKNWSPVWIFPIVTALIGAWVLFYHYSHQGPEVTLITANAEGIEGGKTTIKSRSVDVGVVESATLADDLTHVEIKARLNSGMEKLLHKDTVFWVVKPQIGREGISGLGTLLSGVYIELQPGAKGSKMDKYDLLDSPPLAPPDAKGIRVILDSKKAGQLSPGDPVLFRGYRVGSVETSTFDTQKRNISYQLFINAPYDRLVTNNVRFWKDSGIAVDLTSAGMRVEMGSLTTLLSGGVSFDVPEGLDLGQPVAPKTAFVLYDDQKSIQDSLYTDHIDYLMFFKDSVRGLQPGAPVEFRGIRLGTVSKVPFFAPNMRQTFNDDYRIPVLIRIEPERLKMQLGENADVVEHLGELLKRGLRGSLKTGNLVTGALYVDLDFYPNTPAITGIREFNGYQIIPTVSGGLAQIQQRLMEALDKINKLPLNPMIEQATSTLSESQRTMKNLQTTLDSMNKILASQSMQQLPTDMQSTLRELNRSMQGFQPGSAAYNKMVADMQRLDQVLRELQPVLKTLNEKSNALVFEAKDKKDPEPKRAKQ" ["CCO-PERI-BAC"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 -"G6492-MONOMER" "intermembrane transport lipoprotein PqiC" ["PqiC", "YmbA"] "MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLAGVWSQEAASIAQEIKRLP" ["CCO-PERI-BAC"] ["CCO-OUTER-MEM", "CCO-MEMBRANE"] 0 [] {} 0 +"G6492-MONOMER" "intermembrane transport lipoprotein PqiC" ["PqiC", "YmbA"] "MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLAGVWSQEAASIAQEIKRLP" ["CCO-PERI-BAC"] ["CCO-OUTER-MEM"] 0 [] {} 0 "G6493-MONOMER" "putative ATP-dependent protease YcbZ" ["YcbZ"] "MTITKLAWRDLVPDTDSYQEIFAQPHLIDENDPLFSDTQPRLQFALEQLLHTRASSSFMLAKAPEESEYLNLIANAARTLQSDAGQLVGGHYEVSGHSIRLRHAVSADDNFATLTQVVAADWVEAEQLFGCLRQFNGDITLQPGLVHQANGGILIISLRTLLAQPLLWMRLKNIVNRERFDWVAFDESRPLPVSVPSMPLKLKVILVGERESLADFQEMEPELSEQAIYSEFEDTLQIVDAESVTQWCRWVTFTARHNHLPAPGADAWPILIREAARYTGEQETLPLSPQWILRQCKEVASLCDGDTFSGEQLNLMLQQREWREGFLAERMQDEILQEQILIETEGERIGQINALSVIEFPGHPRAFGEPSRISCVVHIGDGEFTDIERKAELGGNIHAKGMMIMQAFLMSELQLEQQIPFSASLTFEQSYSEVDGDSASMAELCALISALADVPVNQSIAITGSVDQFGRAQPVGGLNEKIEGFFAICQQRELTGKQGVIIPTANVRHLSLHSELVKAVEEGKFTIWAVDDVTDALPLLLNLVWDGEGQTTLMQTIQERIAQASQQEGRHRFPWPLRWLNWFIPN" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6494-MONOMER" "transcriptional coactivator for CRP" ["YccR", "Sxy"] "MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQNSLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G6495-MONOMER" "putative transporter YccS" ["YccS"] "MLSPLLKRYTWNSAWLYYARIFIALCGTTAFPWWLGDVKLTIPLTLGMVAAALTDLDDRLAGRLRNLIITLFCFFIASASVELLFPWPWLFAIGLTLSTSGFILLGGLGQRYATIAFGALLIAIYTMLGTSLYEHWYQQPMYLLAGAVWYNVLTLIGHLLFPVRPLQDNLARCYEQLARYLELKSRMFDPDIEDQSQAPLYDLALANGLLMATLNQTKLSLLTRLRGDRGQRGTRRTLHYYFVAQDIHERASSSHIQYQTLREHFRHSDVLFRFQRLMSMQGQACQQLSRCILLRQPYQHDPHFERAFTHIDAALERMRDNGAPADLLKTLGFLLNNLRAIDAQLATIESEQAQALPHNNDENELADDSPHGLSDIWLRLSRHFTPESALFRHAVRMSLVLCFGYAIIQITGMHHGYWILLTSLFVCQPNYNATRHRLKLRIIGTLVGIAIGIPVLWFVPSLEGQLVLLVITGVLFFAFRNVQYAHATMFITLLVLLCFNLLGEGFEVALPRVIDTLIGCAIAWAAVSYIWPDWQFRNLPRMLERATEANCRYLDAILEQYHQGRDNRLAYRIARRDAHNRDAELASVVSNMSSEPNVTPQIREAAFRLLCLNHTFTSYISALGAHREQLTNPEILAFLDDAVCYVDDALHHQPADEERVNEALASLKQRMQQLEPRADSKEPLVVQQVGLLIALLPEIGRLQRQITQVPQETPVSA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6496-MONOMER" "PF03733 family inner membrane protein YccF" ["YccF"] "MRTVLNILNFVLGGFATTLGWLLATLVSIVLIFTLPLTRSCWEITKLSLVPYGNEAIHVDELNPAGKNVLLNTGGTVLNIFWLIFFGWWLCLMHIATGIAQCISIIGIPVGIANFKIAAIALWPVGRRVVSVETAQAAREANARRRFE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6495-MONOMER" "putative transporter YccS" ["YccS"] "MLSPLLKRYTWNSAWLYYARIFIALCGTTAFPWWLGDVKLTIPLTLGMVAAALTDLDDRLAGRLRNLIITLFCFFIASASVELLFPWPWLFAIGLTLSTSGFILLGGLGQRYATIAFGALLIAIYTMLGTSLYEHWYQQPMYLLAGAVWYNVLTLIGHLLFPVRPLQDNLARCYEQLARYLELKSRMFDPDIEDQSQAPLYDLALANGLLMATLNQTKLSLLTRLRGDRGQRGTRRTLHYYFVAQDIHERASSSHIQYQTLREHFRHSDVLFRFQRLMSMQGQACQQLSRCILLRQPYQHDPHFERAFTHIDAALERMRDNGAPADLLKTLGFLLNNLRAIDAQLATIESEQAQALPHNNDENELADDSPHGLSDIWLRLSRHFTPESALFRHAVRMSLVLCFGYAIIQITGMHHGYWILLTSLFVCQPNYNATRHRLKLRIIGTLVGIAIGIPVLWFVPSLEGQLVLLVITGVLFFAFRNVQYAHATMFITLLVLLCFNLLGEGFEVALPRVIDTLIGCAIAWAAVSYIWPDWQFRNLPRMLERATEANCRYLDAILEQYHQGRDNRLAYRIARRDAHNRDAELASVVSNMSSEPNVTPQIREAAFRLLCLNHTFTSYISALGAHREQLTNPEILAFLDDAVCYVDDALHHQPADEERVNEALASLKQRMQQLEPRADSKEPLVVQQVGLLIALLPEIGRLQRQITQVPQETPVSA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6496-MONOMER" "PF03733 family inner membrane protein YccF" ["YccF"] "MRTVLNILNFVLGGFATTLGWLLATLVSIVLIFTLPLTRSCWEITKLSLVPYGNEAIHVDELNPAGKNVLLNTGGTVLNIFWLIFFGWWLCLMHIATGIAQCISIIGIPVGIANFKIAAIALWPVGRRVVSVETAQAAREANARRRFE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6498-MONOMER" "curli synthesis inhibitor" ["CsgI", "YccT"] "MKTGIVTTLIALCLPVSVFATTLRLSTDVDLLVLDGKKVSSSLLRGADSIELDNGPHQLVFRVEKTIHLSNSEERLYISPPLVVSFNTQLINQVNFRLPRLENEREANHFDAAPRLELLDGDATPIPVKLDILAITSTAKTIDYEVEVERYNKSAKRASLPQFATMMADDSTLLSGVSELDAIPPQSQVLTEQRLKYWFKLADPQTRNTFLQWAEKQPSS" ["CCO-PERI-BAC"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6499-MONOMER" "putative HspQ acetyl donor" ["YccU", "putative CoA-binding protein with NAD(P)-binding Rossmann-fold domain", "putative CoA binding protein YccU"] "MKETDIAGILTSTHTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQKGYGTLADVPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWMQLGVINEQAAVLARDAGLNVVMDRCPAIEIPRLGLAK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6500-MONOMER" "heat shock protein HspQ" ["YccV", "HspQ", "heat shock protein, hemimethylated DNA-binding protein"] "MIASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELRAAPWYHVVMEDDNGLPVHTYLAEAQLSSELQDEHPEQPSMDELAQTIRKQLQAPRLRN" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6501-MONOMER" "23S rRNA m5C1962 methyltransferase" ["YccW", "RlmI"] "MSVRLVLAKGREKSLLRRHPWVFSGAVARMEGKASLGETIDIVDHQGKWLARGAYSPASQIRARVWTFDPSESIDIAFFSRRLQQAQKWRDWLAQKDGLDSYRLIAGESDGLPGITIDRFGNFLVLQLLSAGAEYQRAALISALQTLYPECSIYDRSDVAVRKKEGMELTQGPVTGELPPALLPIEEHGMKLLVDIQHGHKTGYYLDQRDSRLATRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIATYPEGLYLKGFACRVM" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "G6502-MONOMER" "acylphosphatase" ["YccX"] "MSKVCIIAWVYGRVQGVGFRYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGGPRSARVERVLSEPHHPSGELTDFRIR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6503-MONOMER" "phosphotyrosine-protein phosphatase Etp" ["Etp", "YccY"] "MAQLKFNSILVVCTGNICRSPIGERLLRKRLPGVKVKSAGVHGLVKHPADATAADVAANHGVSLEGHAGRKLTAEMARNYDLILAMESEHIAQVTAIAPEVRGKTMLFGQWLEQKEIPDPYRKSQDAFEHVYGMLERASQEWAKRLSR" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6504-MONOMER" "putative exopolysaccharide export lipoprotein GfcE" ["YccZ", "GfcE"] "MKKNIFKFSVLTLAVLSLTACTLVPGQNLSTSNKDVIELPDNQYDLDKMVNIYPVTPGLIDQLRAKPIMSQANPELEQQIANYEYRIGIGDVLMVTVWDHPELTTPAGQYRSASDTGNWVNADGAIFYPYIGRLKVAGKTLTQVRNEITARLDSVIESPQVDVSVAAFRSQKAYVTGEVSKSGQQPITNIPLTIMDAINAAGGLTADADWRNVVLTQNGVKTKVNLYALMQRGDLRQNKLLHPGDILFIPRNDDLKVFVMGEVGKQSTLKMDRSGMTLAEALGNAEGMNQDVADATGIFVIRATQNKQNGKIANIYQLNAKDASAMILGTEFQLEPYDIVYVTTAPLARWNRVISLLVPTISGVHDLTETSRWIQTWPN" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 -"G6505-MONOMER" "putative lipoprotein GfcD" ["YmcA", "GfcD"] "MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQMPNARIAPEGEFSVNYRDNDQYRFYSTSVALFPWLEGTIRYTDVRTRKYSQWEDFSGDQSYKDKSFDFKLRLWEEGYWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMAWGYAGNAGNITNPFCRVSDKYCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPLRLKLEYDGNNYQNDFAGKLPQASHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTNFNDLRPALRDTPKPAYQPAPESEGLQYTTVANQLTALKYNAGFDAPEIQLRDKTLYMSGQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAGTAPGQSEPLQQQRVEAEDLSAFGRGYRIREDRFSYSFNPTLSQSLGGPEDFYMFQLGLMSSARYWFTDHLLLDGGIFTNIYNNYDKFKSSLLPADSTLPRVRTHIRDYVRNDVYLNNLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPLDACWALGVDVNYVKQRDWDNMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVGQYLAKDKGATIDVAKRFDSGVAVGVWAAISNVSKDDYGEGGFSKGFYISIPFDLMTIGPNRNRAVVSWTPLTRDGGQMLSRKYQLYPMTAEREVPVGQ" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"G6504-MONOMER" "putative exopolysaccharide export lipoprotein GfcE" ["YccZ", "GfcE"] "MKKNIFKFSVLTLAVLSLTACTLVPGQNLSTSNKDVIELPDNQYDLDKMVNIYPVTPGLIDQLRAKPIMSQANPELEQQIANYEYRIGIGDVLMVTVWDHPELTTPAGQYRSASDTGNWVNADGAIFYPYIGRLKVAGKTLTQVRNEITARLDSVIESPQVDVSVAAFRSQKAYVTGEVSKSGQQPITNIPLTIMDAINAAGGLTADADWRNVVLTQNGVKTKVNLYALMQRGDLRQNKLLHPGDILFIPRNDDLKVFVMGEVGKQSTLKMDRSGMTLAEALGNAEGMNQDVADATGIFVIRATQNKQNGKIANIYQLNAKDASAMILGTEFQLEPYDIVYVTTAPLARWNRVISLLVPTISGVHDLTETSRWIQTWPN" [] ["CCO-OUTER-MEM"] 0 [] {} 0 +"G6505-MONOMER" "putative lipoprotein GfcD" ["YmcA", "GfcD"] "MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQMPNARIAPEGEFSVNYRDNDQYRFYSTSVALFPWLEGTIRYTDVRTRKYSQWEDFSGDQSYKDKSFDFKLRLWEEGYWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMAWGYAGNAGNITNPFCRVSDKYCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPLRLKLEYDGNNYQNDFAGKLPQASHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTNFNDLRPALRDTPKPAYQPAPESEGLQYTTVANQLTALKYNAGFDAPEIQLRDKTLYMSGQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAGTAPGQSEPLQQQRVEAEDLSAFGRGYRIREDRFSYSFNPTLSQSLGGPEDFYMFQLGLMSSARYWFTDHLLLDGGIFTNIYNNYDKFKSSLLPADSTLPRVRTHIRDYVRNDVYLNNLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPLDACWALGVDVNYVKQRDWDNMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVGQYLAKDKGATIDVAKRFDSGVAVGVWAAISNVSKDDYGEGGFSKGFYISIPFDLMTIGPNRNRAVVSWTPLTRDGGQMLSRKYQLYPMTAEREVPVGQ" [] ["CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] 0 [] {} 0 "G6506-MONOMER" "capsule biosynthesis GfcC family protein" ["YmcB", "GfcC"] "MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPGEQQTLSVGPVENVVQLVTQPQLRDRLWWPGALLTDSAAKAKALKDYQHVMAQLASWEAEADDDVAATIKSVRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAGQLPWQAGRSVTDYLQDHPRLAGADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSAHVLPEKYADLNDQIVSVLTQRVPD" [] [] 0 [] {} 0 -"G6507-MONOMER" "lipoprotein GfcB" ["YmcC", "GfcB"] "MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVADQQIQALPYSTMYLRLNEGQRIFVVLGYIEQEQSKWLSQDNAMLVTHNGRLLKTVKLNNNLLEVTNSGQDPLRNALAIKDGSRWTRDILWSEDNHFRSATLSSTFSFAGLETLNIAGRNVLCNVWQEEVTSTRPEKQWQNTFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 -"G6508-MONOMER" "threonine-rich inner membrane protein GfcA" ["YmcD", "GfcA"] "MKHKLSAILMAFMLTTPAAFAAPEATNGTEATTGTTGTTTTTTGATTTATTTGGVAAGAVGTATVVGVATAVGVATLAVVAANDSGDGGSHNTSTTTSTTR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6507-MONOMER" "lipoprotein GfcB" ["YmcC", "GfcB"] "MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVADQQIQALPYSTMYLRLNEGQRIFVVLGYIEQEQSKWLSQDNAMLVTHNGRLLKTVKLNNNLLEVTNSGQDPLRNALAIKDGSRWTRDILWSEDNHFRSATLSSTFSFAGLETLNIAGRNVLCNVWQEEVTSTRPEKQWQNTFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6508-MONOMER" "threonine-rich inner membrane protein GfcA" ["YmcD", "GfcA"] "MKHKLSAILMAFMLTTPAAFAAPEATNGTEATTGTTGTTTTTTGATTTATTTGGVAAGAVGTATVVGVATAVGVATLAVVAANDSGDGGSHNTSTTTSTTR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6509-MONOMER" "IS1 protein InsB" ["InsB4"] "MPGNSPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERYNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6510-MONOMER" "CspA family protein CspH" ["CspK", "CspH"] "MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANVYLS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6511-MONOMER" "cold shock protein CspG" ["CspG"] "MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQRGPAAANVVTL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6512-MONOMER" "protein YmcE" ["YmcE"] "MRRWISQNNIRLPRGAFFISALFFFNAVCIVSDNLLIIESFGEMAYNISYLTRVPGTNTLLACCCLLRPEEVNSEY" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 -"G6513-MONOMER" "putative electron transport protein YccM" ["YccM", "putative 4Fe-4S membrane protein"] "MAENKRTRWQRRPGTTGGKLPWNDWRNATTWRKATQLLLLAMNIYIAITFWYWVRYYETASSTTFVARPGGIEGWLPIAGLMNLKYSLVTGQLPSVHAAAMLLLVAFIVISLLLKKAFCSWLCPVGTLSELIGDLGNKLFGRQCVLPRWLDIPLRGVKYLLLSFFIYIALLMPAQAIHYFMLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFIRHAWCRYLCPYGALMGVVSLLSPFKIRRNAESCIDCGKCAKNCPSRIPVDKLIQVRTVECTGCMTCVESCPVASTLTFSLQKPAANKKAFALSGWLMTLLVLGIMFAVIGYAMYAGVWQSPVPEELYRRLIPQAPMIGH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"CPD-7": 2} 0 +"G6512-MONOMER" "protein YmcE" ["YmcE"] "MRRWISQNNIRLPRGAFFISALFFFNAVCIVSDNLLIIESFGEMAYNISYLTRVPGTNTLLACCCLLRPEEVNSEY" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6513-MONOMER" "putative electron transport protein YccM" ["YccM", "putative 4Fe-4S membrane protein"] "MAENKRTRWQRRPGTTGGKLPWNDWRNATTWRKATQLLLLAMNIYIAITFWYWVRYYETASSTTFVARPGGIEGWLPIAGLMNLKYSLVTGQLPSVHAAAMLLLVAFIVISLLLKKAFCSWLCPVGTLSELIGDLGNKLFGRQCVLPRWLDIPLRGVKYLLLSFFIYIALLMPAQAIHYFMLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFIRHAWCRYLCPYGALMGVVSLLSPFKIRRNAESCIDCGKCAKNCPSRIPVDKLIQVRTVECTGCMTCVESCPVASTLTFSLQKPAANKKAFALSGWLMTLLVLGIMFAVIGYAMYAGVWQSPVPEELYRRLIPQAPMIGH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {"CPD-7": 2} 0 "G6518-MONOMER" "FMN reductase RutF" ["YcdH", "RutF", "flavin reductase"] "MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPAFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHTTPYGLVWFDRSYHALMRPAC" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6519-MONOMER" "putative malonic semialdehyde reductase" ["YcdI", "RutE"] "MNEAVSPGALSTLFTDARTHNGWRETPVSDETLREIYALMKWGPTSANCSPARIVFTRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPLLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQHVDDAFFTGSTLKSNLLINIGYGDSSKLYARLPRLSFEEACGLL" [] [] 0 [] {} 0 +"G6519-MONOMER" "probable malonic semialdehyde reductase" ["YcdI", "RutE"] "MNEAVSPGALSTLFTDARTHNGWRETPVSDETLREIYALMKWGPTSANCSPARIVFTRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPLLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQHVDDAFFTGSTLKSNLLINIGYGDSSKLYARLPRLSFEEACGLL" [] [] 0 [] {} 0 "G6520-MONOMER" "putative aminoacrylate hydrolase RutD" ["RutD", "YcdJ"] "MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMPYGGHACNVTDPETFNALLLNGLASLLHHREAAL" [] [] 0 [] {} 1 "G6521-MONOMER" "3-aminoacrylate deaminase" ["YcdK", "RutC", "putative aminoacrylate peracid reductase RutC"] "MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6522-MONOMER" "ureidoacrylate amidohydrolase" ["YcdL", "RutB", "peroxyureidoacrylate amidohydrolase"] "MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPKFAQKAALFNIETFFGWVSDVETFCDALSPTSFAHIA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6523-MONOMER" "pyrimidine monooxygenase RutA" ["YcdM", "RutA", "pyrimidine oxygenase"] "MQDAAPRLTFTLRDEERLMMKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6527-MONOMER" "ferrous iron transport system protein EfeO" ["YcdO", "EfeO", "EfeOI"] "MTINFRRNALQLSVAALFSSAFMANAADVPQVKVTVTDKQCEPMTITVNAGKTQFIIQNHSQKALEWEILKGVMVVEERENIAPGFSQKMTANLQPGEYDMTCGLLTNPKGKLIVKGEATADAAQSDALLSLGGAITAYKAYVMAETTQLVTDTKAFTDAIKAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDYEQKAADPKFTGFHRLEKALFGDNTTKGMDQYAEQLYTDVVDLQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANVEGSQKIVDLLRPQLQKANPELLAKVDANFKKVDTILAKYRTKDGFETYDKLTDADRNALKGPITALAEDLAQLRGVLGLD" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 -"G6528-MONOMER" "poly-N-acetyl-D-glucosamine synthase subunit PgaD" ["YcdP", "HmsS", "PgaD", "poly-β-1,PGA synthase subunit PgaD"] "MNNLIITTRQSPVRLLVDYVATTILWTLFALFIFLFAMDLLTGYYWQSEARSRLQFYFLLAVANAVVLIVWALYNKLRFQKQQHHAAYQYTPQEYAESLAIPDELYQQLQKSHRMSVHFTSQGQIKMVVSEKALVRA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"G6529-MONOMER" "poly-N-acetyl-D-glucosamine synthase subunit PgaC" ["YcdQ", "HmsR", "PgaC", "PGA synthase subunit PgaC"] "MINRIVSFFILCLVLCIPLCVAYFHSGELMMRFVFFWPFFMSIMWIVGGVYFWVYRERHWPWGENAPAPQLKDNPSISIIIPCFNEEKNVEETIHAALAQRYENIEVIAVNDGSTDKTRAILDRMAAQIPHLRVIHLAQNQGKAIALKTGAAAAKSEYLVCIDGDALLDRDAAAYIVEPMLYNPRVGAVTGNPRIRTRSTLVGKIQVGEYSSIIGLIKRTQRIYGNVFTVSGVIAAFRRSALAEVGYWSDDMITEDIDISWKLQLNQWTIFYEPRALCWILMPETLKGLWKQRLRWAQGGAEVFLKNMTRLWRKENFRMWPLFFEYCLTTIWAFTCLVGFIIYAVQLAGVPLNIELTHIAATHTAGILLCTLCLLQFIVSLMIENRYEHNLTSSLFWIIWFPVIFWMLSLATTLVSFTRVMLMPKKQRARWVSPDRGILRG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"G6530-MONOMER" "poly-β-1,6-N-acetyl-D-glucosamine N-deacetylase and β-1,6 glycoside hydrolase" ["YcdR", "HmsF", "PgaB"] "MLRNGNKYLLMLVSIIMLTACISQSRTSFIPPQDRESLLAEQPWPHNGFVAISWHNVEDEAADQRFMSVRTSALREQFAWLRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSFYTRVFPILQAFQWPAVWAPVGSWVDTPADKQVKFGDELVDREYFATWQQVREVARSRLVELASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTKVEVNPHVFVWPYGEANGIAIEELKKLGYDMFFTLESGLANASQLDSIPRVLIANNPSLKEFAQQIITVQEKSPQRIMHIDLDYVYDENLQQMDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKEVWFPNRLLPMKADIFSRVAWQLRTRSGVNIYAWMPVLSWDLDPTLTRVKYLPTGEKKAQIHPEQYHRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDALLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWARFKSRALTDFTLELSARVKAIRGPHIKTARNIFALPVIQPESEAWFAQNYADFLKSYDWTAIMAMPYLEGVAEKSADQWLIQLTNQIKNIPQAKDKSILELQAQNWQKNGQHQAISSQQLAHWMSLLQLNGVKNYGYYPDNFLHNQPEIDLIRPEFSTAWYPKND" [] ["CCO-PERI-BAC", "CCO-OUTER-MEM", "CCO-MEMBRANE"] 0 [] {} 0 -"G6531-MONOMER" "partially deacetylated poly-β-1,6-N-acetyl-D-glucosamine export outer membrane porin" ["YcdS", "HmsH", "PgaA"] "MYSSSRKRCPKTKWALKLLTAAFLAASPAAKSAVNNAYDALIIEARKGNTQPALSWFALKSALSNNQIADWLQIALWAGQDKQVITVYNRYRHQQLPARGYAAVAVAYRNLQQWQNSLTLWQKALSLEPQNKDYQRGQILTLADAGHYDTALVKLKQLNSGAPDKANLLAEAYIYKLAGRHQDELRAMTESLPENASTQQYPTEYVQALRNNQLAAAIDDANLTPDIRADIHAELVRLSFMPTRSESERYAIADRALAQYAALEILWHDNPDRTAQYQRIQVDHLGALLTRDRYKDVISHYQRLKKTGQIIPPWGQYWVASAYLKDHQPKKAQSIMTELFYHKETIAPDLSDEELADLFYSHLESENYPGALTVTQHTINTSPPFLRLMGTPTSIPNDTWLQGHSFLSTVAKYSNDLPQAEMTARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVIEPRNINLEVEQAWTALTLQEWQQAAVLTHDVVEREPQDPGVVRLKRAVDVHNLAELRIAGSTGIDAEGPDSGKHDVDLTTIVYSPPLKDNWRGFAGFGYADGQFSEGKGIVRDWLAGVEWRSRNIWLEAEYAERVFNHEHKPGARLSGWYDFNDNWRIGSQLERLSHRVPLRAMKNGVTGNSAQAYVRWYQNERRKYGVSWAFTDFSDSNQRHEVSLEGQERIWSSPYLIVDFLPSLYYEQNTEHDTPYYNPIKTFDIVPAFEASHLLWRSYENSWEQIFSAGVGASWQKHYGTDVVTQLGYGQRISWNDVIDAGATLRWEKRPYDGDREHNLYVEFDMTFRF" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 -"G6532-MONOMER" "probable diguanylate cyclase DgcT" ["DgcT", "YcdT"] "MEKDYLRISSTVLVSLLFGLALVLVNSWFNQPGVEEVVPRSTYLMVMIALFFIDTVAFIFMQLYFIYDRRQFSNCVLSLAFLSCLIYFVITVIIIQQIIEERLTSSVVQNDIAIYYLFRQMSLCILIFLALVNKVSENTKQRNLFSKKMTLCISLFFVFGGPIVAHILSSHYESYNLHIAELTNENGQVVWKASYVTIMIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVVSKLTVMVIFMCHIFSALRVTKNIAHRDPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVVVRDVVNFCESP" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 0 +"G6527-MONOMER" "Fe(2+) transport system protein EfeO" ["YcdO", "EfeO", "EfeOI"] "MTINFRRNALQLSVAALFSSAFMANAADVPQVKVTVTDKQCEPMTITVNAGKTQFIIQNHSQKALEWEILKGVMVVEERENIAPGFSQKMTANLQPGEYDMTCGLLTNPKGKLIVKGEATADAAQSDALLSLGGAITAYKAYVMAETTQLVTDTKAFTDAIKAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDYEQKAADPKFTGFHRLEKALFGDNTTKGMDQYAEQLYTDVVDLQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANVEGSQKIVDLLRPQLQKANPELLAKVDANFKKVDTILAKYRTKDGFETYDKLTDADRNALKGPITALAEDLAQLRGVLGLD" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 +"G6528-MONOMER" "poly-N-acetyl-D-glucosamine synthase subunit PgaD" ["YcdP", "HmsS", "PgaD", "poly-β-1,PGA synthase subunit PgaD"] "MNNLIITTRQSPVRLLVDYVATTILWTLFALFIFLFAMDLLTGYYWQSEARSRLQFYFLLAVANAVVLIVWALYNKLRFQKQQHHAAYQYTPQEYAESLAIPDELYQQLQKSHRMSVHFTSQGQIKMVVSEKALVRA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"G6529-MONOMER" "poly-N-acetyl-D-glucosamine synthase subunit PgaC" ["YcdQ", "HmsR", "PgaC", "PGA synthase subunit PgaC"] "MINRIVSFFILCLVLCIPLCVAYFHSGELMMRFVFFWPFFMSIMWIVGGVYFWVYRERHWPWGENAPAPQLKDNPSISIIIPCFNEEKNVEETIHAALAQRYENIEVIAVNDGSTDKTRAILDRMAAQIPHLRVIHLAQNQGKAIALKTGAAAAKSEYLVCIDGDALLDRDAAAYIVEPMLYNPRVGAVTGNPRIRTRSTLVGKIQVGEYSSIIGLIKRTQRIYGNVFTVSGVIAAFRRSALAEVGYWSDDMITEDIDISWKLQLNQWTIFYEPRALCWILMPETLKGLWKQRLRWAQGGAEVFLKNMTRLWRKENFRMWPLFFEYCLTTIWAFTCLVGFIIYAVQLAGVPLNIELTHIAATHTAGILLCTLCLLQFIVSLMIENRYEHNLTSSLFWIIWFPVIFWMLSLATTLVSFTRVMLMPKKQRARWVSPDRGILRG" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"G6530-MONOMER" "poly-β-1,6-N-acetyl-D-glucosamine N-deacetylase and β-1,6 glycoside hydrolase" ["YcdR", "HmsF", "PgaB"] "MLRNGNKYLLMLVSIIMLTACISQSRTSFIPPQDRESLLAEQPWPHNGFVAISWHNVEDEAADQRFMSVRTSALREQFAWLRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSFYTRVFPILQAFQWPAVWAPVGSWVDTPADKQVKFGDELVDREYFATWQQVREVARSRLVELASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTKVEVNPHVFVWPYGEANGIAIEELKKLGYDMFFTLESGLANASQLDSIPRVLIANNPSLKEFAQQIITVQEKSPQRIMHIDLDYVYDENLQQMDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKEVWFPNRLLPMKADIFSRVAWQLRTRSGVNIYAWMPVLSWDLDPTLTRVKYLPTGEKKAQIHPEQYHRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDALLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWARFKSRALTDFTLELSARVKAIRGPHIKTARNIFALPVIQPESEAWFAQNYADFLKSYDWTAIMAMPYLEGVAEKSADQWLIQLTNQIKNIPQAKDKSILELQAQNWQKNGQHQAISSQQLAHWMSLLQLNGVKNYGYYPDNFLHNQPEIDLIRPEFSTAWYPKND" [] ["CCO-PERI-BAC", "CCO-OUTER-MEM"] 0 [] {} 0 +"G6531-MONOMER" "partially deacetylated poly-β-1,6-N-acetyl-D-glucosamine export outer membrane porin" ["YcdS", "HmsH", "PgaA"] "MYSSSRKRCPKTKWALKLLTAAFLAASPAAKSAVNNAYDALIIEARKGNTQPALSWFALKSALSNNQIADWLQIALWAGQDKQVITVYNRYRHQQLPARGYAAVAVAYRNLQQWQNSLTLWQKALSLEPQNKDYQRGQILTLADAGHYDTALVKLKQLNSGAPDKANLLAEAYIYKLAGRHQDELRAMTESLPENASTQQYPTEYVQALRNNQLAAAIDDANLTPDIRADIHAELVRLSFMPTRSESERYAIADRALAQYAALEILWHDNPDRTAQYQRIQVDHLGALLTRDRYKDVISHYQRLKKTGQIIPPWGQYWVASAYLKDHQPKKAQSIMTELFYHKETIAPDLSDEELADLFYSHLESENYPGALTVTQHTINTSPPFLRLMGTPTSIPNDTWLQGHSFLSTVAKYSNDLPQAEMTARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVIEPRNINLEVEQAWTALTLQEWQQAAVLTHDVVEREPQDPGVVRLKRAVDVHNLAELRIAGSTGIDAEGPDSGKHDVDLTTIVYSPPLKDNWRGFAGFGYADGQFSEGKGIVRDWLAGVEWRSRNIWLEAEYAERVFNHEHKPGARLSGWYDFNDNWRIGSQLERLSHRVPLRAMKNGVTGNSAQAYVRWYQNERRKYGVSWAFTDFSDSNQRHEVSLEGQERIWSSPYLIVDFLPSLYYEQNTEHDTPYYNPIKTFDIVPAFEASHLLWRSYENSWEQIFSAGVGASWQKHYGTDVVTQLGYGQRISWNDVIDAGATLRWEKRPYDGDREHNLYVEFDMTFRF" [] ["CCO-OUTER-MEM"] 0 [] {} 0 +"G6532-MONOMER" "probable diguanylate cyclase DgcT" ["DgcT", "YcdT"] "MEKDYLRISSTVLVSLLFGLALVLVNSWFNQPGVEEVVPRSTYLMVMIALFFIDTVAFIFMQLYFIYDRRQFSNCVLSLAFLSCLIYFVITVIIIQQIIEERLTSSVVQNDIAIYYLFRQMSLCILIFLALVNKVSENTKQRNLFSKKMTLCISLFFVFGGPIVAHILSSHYESYNLHIAELTNENGQVVWKASYVTIMIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVVSKLTVMVIFMCHIFSALRVTKNIAHRDPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVVVRDVVNFCESP" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 0 "G6534-MONOMER" "IS3 element protein InsE" ["InsE1"] "MTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSLYESQLYNWRSKQQNQQTSSERELEMSTEIARLKRQLAERDEELAILQKAATYFAKRLK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6535-MONOMER" "putative uncharacterized protein YmdE" ["YmdE"] "MRDYLAGLDIASPEHQVLMNVTAKSEVAPSIIKENLSLHLTHTVKWTESLDTFLNMPTPVAFLEISNKPYLGNMLNDFAGVDQQRVMHCRKAFSDAKVFK" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6536-MONOMER" "uncharacterized protein YcdU" ["YcdU"] "MIPDYLTFIRFQDKRNLIYIYAIGLILIGFYWKNAGFTFPSEDIGVVSGILALVLYNFIFDLKAYWAYKCVTKNIDFSWFKKKQNHKIELFLTQPLVAGFLSLIMLSAMSWGLYQLLPSLYALFLISLLGPLVIFLLFRMIRTSYVKQVAISVAKKVKYKSLTRYVLLSVCISTVVNLLTISPLRNSDSFVTEGQWLTFKSIIALLILCGVVLAINLFFLRFSKRYAFLGRLFLQEIDLFFSSENALSTFFAKPLWLRLFILLVIEVMWITLVSVLATLVEWRIWFEAYFLLCYVPCLIYYFFYCRFLWHNDFMMACDMYFRWGHFNK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6536-MONOMER" "uncharacterized protein YcdU" ["YcdU"] "MIPDYLTFIRFQDKRNLIYIYAIGLILIGFYWKNAGFTFPSEDIGVVSGILALVLYNFIFDLKAYWAYKCVTKNIDFSWFKKKQNHKIELFLTQPLVAGFLSLIMLSAMSWGLYQLLPSLYALFLISLLGPLVIFLLFRMIRTSYVKQVAISVAKKVKYKSLTRYVLLSVCISTVVNLLTISPLRNSDSFVTEGQWLTFKSIIALLILCGVVLAINLFFLRFSKRYAFLGRLFLQEIDLFFSSENALSTFFAKPLWLRLFILLVIEVMWITLVSVLATLVEWRIWFEAYFLLCYVPCLIYYFFYCRFLWHNDFMMACDMYFRWGHFNK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6539-MONOMER" "glyoxylate/hydroxypyruvate reductase A" ["GhrA", "YcdW"] "MDIIFYHPTFDTQWWIEALRKAIPQARVRAWKSGDNDSADYALVWHPPVEMLAGRDLKAVFALGAGVDSILSKLQAHPEMLNPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYRIQQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHVAAITRPAEAVEYISRTIAQLEKGERVCGQVDRARGY" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6540-MONOMER" "zinc-binding phosphatase YcdX" ["YcdX"] "MYPVDLHMHTVASTHAYSTLSDYIAQAKQKGIKLFAITDHGPDMEDAPHHWHFINMRIWPRVVDGVGILRGIEANIKNVDGEIDCSGKMFDSLDLIIAGFHEPVFAPHDKATNTQAMIATIASGNVHIISHPGNPKYEIDVKAVAEAAAKHQVALEINNSSFLHSRKGSEDNCREVAAAVRDAGGWVALGSDSHTAFTMGEFEECLKILDAVDFPPERILNVSPRRLLNFLESRGMAPIAEFADL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 3} 1 "G6541-MONOMER" "chaperone protein YcdY" ["YcdY", "protein involved in maturation of YcdX"] "MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDELLTRLQKSCDMTQVSADYNALFIGDECAVPPYRSAWVEGATEAEVRAFLSERGMPLADTPADHIGTLLLAASWLEDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFWRTMAPLTRDAISAMWDELEEDSEE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6542-MONOMER" "inner membrane protein YcdZ" ["NupT", "YcdZ"] "MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGLKGLAISAATLLSGVVWAMVIIYGSALAPHLEILGYVITGIVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGDWKLVLPSLALGLIFGYAMKNSGLWLAARSAKTAHREQEIKNKA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6543-MONOMER" "curli secretion channel" ["CsgG"] "MQRLFLLVAVMLLSGCLTAPPKEAARPTLMPRAQSYKDLTHLPAPTGKIFVSVYNIQDETGQFKPYPASNFSTAVPQSATAMLVTALKDSRWFIPLERQGLQNLLNERKIIRAAQENGTVAINNRIPLQSLTAANIMVEGSIIGYESNVKSGGVGARYFGIGADTQYQLDQIAVNLRVVNVSTGEILSSVNTSKTILSYEVQAGVFRFIDYQRLLEGEVGYTSNEPVMLCLMSAIETGVIFLINDGIDRGLWDLQNKAERQNDILVKYRHMSVPPES" ["CCO-OUTER-MEM"] ["CCO-PERI-BAC", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 -"G6544-MONOMER" "curli assembly component CsgF" ["CsgF"] "MRVKHAVVLLMLISPLSWAGTMTFQFRNPNFGGNPNNGAFLLNSAQAQNSYKDPSYNDDFGIETPSALDNFTQAIQSQILGGLLSNINTGKPGRMVTNDYIVDIANRDGQLQLNVTDRKTGQTSTIQVSGLQNNSTDF" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 +"G6542-MONOMER" "inner membrane protein YcdZ" ["NupT", "YcdZ"] "MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGLKGLAISAATLLSGVVWAMVIIYGSALAPHLEILGYVITGIVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGDWKLVLPSLALGLIFGYAMKNSGLWLAARSAKTAHREQEIKNKA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6543-MONOMER" "curli secretion channel" ["CsgG"] "MQRLFLLVAVMLLSGCLTAPPKEAARPTLMPRAQSYKDLTHLPAPTGKIFVSVYNIQDETGQFKPYPASNFSTAVPQSATAMLVTALKDSRWFIPLERQGLQNLLNERKIIRAAQENGTVAINNRIPLQSLTAANIMVEGSIIGYESNVKSGGVGARYFGIGADTQYQLDQIAVNLRVVNVSTGEILSSVNTSKTILSYEVQAGVFRFIDYQRLLEGEVGYTSNEPVMLCLMSAIETGVIFLINDGIDRGLWDLQNKAERQNDILVKYRHMSVPPES" ["CCO-OUTER-MEM"] ["CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"G6544-MONOMER" "curli assembly component CsgF" ["CsgF"] "MRVKHAVVLLMLISPLSWAGTMTFQFRNPNFGGNPNNGAFLLNSAQAQNSYKDPSYNDDFGIETPSALDNFTQAIQSQILGGLLSNINTGKPGRMVTNDYIVDIANRDGQLQLNVTDRKTGQTSTIQVSGLQNNSTDF" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 1 "G6545-MONOMER" "curli assembly component CsgE" ["CsgE"] "MKRYLRWIVAAEFLFAAGNLHAVEVEVPGLLTDHTVSSIGHDFYRAFSDKWESDYTGNLTINERPSARWGSWITITVNQDVIFQTFLFPLKRDFEKTVVFALIQTEEALNRRQINQALLSTGDLAHDEF" ["CCO-OUTER-MEM"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6547-MONOMER" "curlin, minor subunit" ["CsgB"] "MKNKLLFMMLTILGAPGIAAAAGYDLANSEYNFAVNELSKSSFNQAAIIGQAGTNNSAQLRQGGSKLLAVVAQEGSSNRAKIDQTGDYNLAYIDQAGSANDASISQGAYGNTAMIIQKGSGNKANITQYGTQKTAIVVQRQSQMAIRVTQR" ["CCO-PILUS", "CCO-OUTER-MEM"] ["CCO-PILUS"] 0 [] {} 0 "G6548-MONOMER" "curlin chaperone" ["YcdE", "CsgC"] "MNTLLLLAALSSQITFNTTQQGDVYTIIPEVTLTQSCLCRVQILSLREGSSGQSQTKQEKTLSLPANQPIALTKLSLNISPDDRVKIVVTVSDGQSLHLSQQWPPSSEKS" [] ["CCO-PERI-BAC"] 0 [] {} 0 "G6549-MONOMER" "uncharacterized protein YmdA" ["YmdA"] "MFRPFLNSLMLGSLFFPFIAIAGSTVQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGSIPGKTYSSKALMSGNVKNAQIASVKVQYLDKQKKLAVMNIEYN" [] ["CCO-EXTRACELLULAR"] 0 [] {} 0 "G6550-MONOMER" "2'-O-acetyl-ADP-ribose deacetylase, regulator of RNase III activity" ["YmdB"] "MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQGDE" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6551-MONOMER" "cardiolipin synthase C" ["ClsC", "YmdC", "cardiolipin synthase 3"] "MPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLDDNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRKMESSPFINHLVDGTLPLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEIILKKEPATSFWKRVMVRLASILPVEWLL" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6552-MONOMER" "osmoregulated periplasmic glucans (OPG) biosynthesis protein C" ["OpgC", "YmdD", "MdoC", "O-succinyl transferase"] "MNPVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAESSLWLTLFNDFIHSFRMQVFFVISGYFSYMLFLRYPLKKWWKVRVERVGIPMLTAIPLLTLPQFIMLQYVKGKAESWPGLSLYDKYNTLAWELISHLWFLLVLVVMTTLCVWIFKRIRNNLENSDKTNKKFSMVKLSVIFLCLGIGYAVIRRTIFIVYPPILSNGMFNFIVMQTLFYLPFFILGALAFIFPHLKALFTTPSRGCTLAAALAFVAYLLNQRYGSGDAWMYETESVITMVLGLWMVNVVFSFGHRLLNFQSARVTYFVNASLFIYLVHHPLTLFFGAYITPHITSNWLGFLCGLIFVVGIAIILYEIHLRIPLLKFLFSGKPVVKRENDKAPAR" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6554-MONOMER" "putative cytochrome b561 YceJ" ["YceJ"] "MSFTNTPERYGVISAAFHWLSAIIVYGMFALGLWMVTLSYYDGWYHKAPELHKSIGILLMMGLVIRVLWRVISPPPGPLPSYSPMTRLAARAGHLALYLLLFAIGISGYLISTADGKPISVFGWFDVPATLADAGAQADFAGALHFWLAWSVVVLSVMHGFMALKHHFIDKDDTLKRMLGKSSSDYGV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"PROTOHEME": 1} 0 +"G6552-MONOMER" "osmoregulated periplasmic glucans (OPG) biosynthesis protein C" ["OpgC", "YmdD", "MdoC", "O-succinyl transferase"] "MNPVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAESSLWLTLFNDFIHSFRMQVFFVISGYFSYMLFLRYPLKKWWKVRVERVGIPMLTAIPLLTLPQFIMLQYVKGKAESWPGLSLYDKYNTLAWELISHLWFLLVLVVMTTLCVWIFKRIRNNLENSDKTNKKFSMVKLSVIFLCLGIGYAVIRRTIFIVYPPILSNGMFNFIVMQTLFYLPFFILGALAFIFPHLKALFTTPSRGCTLAAALAFVAYLLNQRYGSGDAWMYETESVITMVLGLWMVNVVFSFGHRLLNFQSARVTYFVNASLFIYLVHHPLTLFFGAYITPHITSNWLGFLCGLIFVVGIAIILYEIHLRIPLLKFLFSGKPVVKRENDKAPAR" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6554-MONOMER" "putative cytochrome b561 YceJ" ["YceJ"] "MSFTNTPERYGVISAAFHWLSAIIVYGMFALGLWMVTLSYYDGWYHKAPELHKSIGILLMMGLVIRVLWRVISPPPGPLPSYSPMTRLAARAGHLALYLLLFAIGISGYLISTADGKPISVFGWFDVPATLADAGAQADFAGALHFWLAWSVVVLSVMHGFMALKHHFIDKDDTLKRMLGKSSSDYGV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6555-MONOMER" "DUF2770 domain-containing protein YceO" ["YceO", "small protein involved in biofilm formation and acid stress response"] "MRPFLQEYLMRRLLHYLINNIREHLMLYLFLWGLLAIMDLIYVFYF" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6557-MONOMER" "regulator of biofilm formation" ["YceP", "BssS"] "MEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQTPNKSEQEGTEVGQTLWLTTDVARQFISILEAGIAKIESGDFQVNEYRRH" [] [] 0 [] {} 0 "G6558-MONOMER" "DNA damage-inducible protein I" ["DinI"] "MRIEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKEDKQRISEILQETWESADDWFVSE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6560-MONOMER" "putative oxidoreductase YceM" ["YceM", "MviM", "putative oxidoreductase, NAD(P)-binding Rossmann-fold domain"] "MKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVGFNRRFAPLYGELKTQLATAASLRMDKHRSNSVGPHDLYFTLLDDYLHVVDTALWLSGGKASLDGGTLLTNDAGEMLFAEHHFSAGPLQITTCMHRRAGSQRETVQAVTDGALIDITDMREWREERGQGVVHKPIPGWQSTLEQRGFVGCARHFIECVQNQTVPQTAGEQAVLAQRIVDKIWRDAMSE" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6561-MONOMER" "lipid II flippase MurJ" ["YceN", "MviN", "MurJ"] "MNLLKSLAAVSSMTMFSRVLGFARDAIVARIFGAGMATDAFFVAFKLPNLLRRIFAEGAFSQAFVPILAEYKSKQGEDATRVFVSYVSGLLTLALAVVTVAGMLAAPWVIMVTAPGFADTADKFALTSQLLKITFPYILLISLASLVGAILNTWNRFSIPAFAPTLLNISMIGFALFAAPYFNPPVLALAWAVTVGGVLQLVYQLPHLKKIGMLVLPRINFHDAGAMRVVKQMGPAILGVSVSQISLIINTIFASFLASGSVSWMYYADRLMEFPSGVLGVALGTILLPSLSKSFASGNHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTVSLFQYGKFTAFDALMTQRALIAYSVGLIGLIVVKVLAPGFYSRQDIKTPVKIAIVTLILTQLMNLAFIGPLKHAGLSLSIGLAACLNASLLYWQLRKQKIFTPQPGWMAFLLRLVVAVLVMSGVLLGMLHIMPEWSLGTMPWRLLRLMAVVLAGIAAYFAALAVLGFKVKEFARRTV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6561-MONOMER" "lipid II flippase MurJ" ["YceN", "MviN", "MurJ"] "MNLLKSLAAVSSMTMFSRVLGFARDAIVARIFGAGMATDAFFVAFKLPNLLRRIFAEGAFSQAFVPILAEYKSKQGEDATRVFVSYVSGLLTLALAVVTVAGMLAAPWVIMVTAPGFADTADKFALTSQLLKITFPYILLISLASLVGAILNTWNRFSIPAFAPTLLNISMIGFALFAAPYFNPPVLALAWAVTVGGVLQLVYQLPHLKKIGMLVLPRINFHDAGAMRVVKQMGPAILGVSVSQISLIINTIFASFLASGSVSWMYYADRLMEFPSGVLGVALGTILLPSLSKSFASGNHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTVSLFQYGKFTAFDALMTQRALIAYSVGLIGLIVVKVLAPGFYSRQDIKTPVKIAIVTLILTQLMNLAFIGPLKHAGLSLSIGLAACLNASLLYWQLRKQKIFTPQPGWMAFLLRLVVAVLVMSGVLLGMLHIMPEWSLGTMPWRLLRLMAVVLAGIAAYFAALAVLGFKVKEFARRTV" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6562-MONOMER" "flagellar biosynthesis protein FlgN" ["FlgN"] "MTRLAEILDQMSAVLNDLKTVMDQEQQHLSMGQINGSQLQWITEQKSSLLATLDYLEQLRRKEPNTANSVDISQRWQEITVKTQQLRQMNQHNGWLLEGQIERNQQALEMLKPHQEPTLYGANGQTSTTHRGGKKISI" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6563-MONOMER" "DUF2655 domain-containing protein YceQ" ["YceQ"] "MSVARFSCGKTAQLSKKQTGYYSPEIFPSTGKDCNPQPANCLKDQYVLRHCCVDDRSGKMGYSVKFLVLTRMDTETASLFHCKPCYSKMTFTIYHPLTHSFFTSCW" [] [] 0 [] {} 0 "G6564-MONOMER" "DUF1425 domain-containing protein YcfL" ["YcfL"] "MRKGCFGLVSLVLLLLVGCRSHPEIPVNDEQSLVMESSLLAAGISAEKPFLSTSDIQPSASSTLYNERQEPVTVHYRFYWYDARGLEMHPLERPRSVTIPAHSAVTLYGSANFLGAHKVRLYLYL" [] ["CCO-MEMBRANE"] 0 [] {} 0 -"G6565-MONOMER" "outer membrane lipoprotein - activator of MrcB activity" ["LpoB", "YcfM"] "MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPGPIEHEDQTAPPAPHIRHYDWNGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"G6565-MONOMER" "outer membrane lipoprotein - activator of MrcB activity" ["LpoB", "YcfM"] "MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPGPIEHEDQTAPPAPHIRHYDWNGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 0 "G6567-MONOMER" "β-N-acetylglucosaminidase" ["YcfO", "NagZ"] "MGPVMLDVEGYELDAEEREILAHPLVGGLILFTRNYHDPAQLRELVRQIRAASRNRLVVAVDQEGGRVQRFREGFTRLPAAQSFAALSGMEEGGKLAQEAGWLMASEMIAMDIDISFAPVLDVGHISAAIGERSYHADPQKALAIASRFIDGMHEAGMKTTGKHFPGHGAVTADSHKETPCDPRPQAEIRAKDMSVFSSLIRENKLDAIMPAHVIYSDVDPRPASGSPYWLKTVLRQELGFDGVIFSDDLSMEGAAIMGSYAERGQASLDAGCDMILVCNNRKGAVSVLDNLSPIKAERVTRLYHKGSFSRQELMDSARWKAISTRLNQLHERWQEEKAGH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6568-MONOMER" "PF05728 family protein YcfP" ["YcfP", "UPF0227 protein YcfP"] "MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLISYSTRHPKHDMQHLLKEVDKMLQLNVDERPLICGVGLGGYWAERIGFLCDIRQVIFNPNLFPYENMEGKIDRPEEYADIATKCVTNFREKNRDRCLVILSRNDEALNSQRTSEELHHYYEIVWDEEQTHKFKNISPHLQRIKAFKTLG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6569-MONOMER" "DNA-binding transcriptional repressor ComR" ["ComR", "YcfQ"] "MATDSTQCVKKSRGRPKVFDRDAALDKAMKLFWQHGYEATSLADLVEATGAKAPTLYAEFTNKEGLFRAVLDRYIDRFAAKHEAQLFCEEKSVESALADYFAAIANCFTSKDTPAGCFMINNCTTLSPDSGDIANTLKSRHAMQERTLQQFLCQRQARGEIPPHCDVTHLAEFLNCIIQGMSISAREGASLEKLMQIAGTTLRLWPELVK" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G6570-MONOMER" "DUF1471 domain-containing multiple stress resistance outer membrane protein BhsA" ["ComC", "YcfR", "BhsA", "outer membrane protein involved in copper permeability, stress resistance and biofilm formation"] "MKNVKTLIAAAILSSMSFASFAAVEVQSTPEGQQKVGTISANAGTNLGSLEEQLAQKADEMGAKSFRITSVTGPNTLHGTAVIYK" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 -"G6571-MONOMER" "L,D-transpeptidase LdtC" ["LdtC", "YcfS"] "MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTANIRARYKAQGIELPAVVPAGLDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNIINTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNSAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL" [] ["CCO-EXTRACELLULAR", "CCO-PERI-BAC"] 0 [] {} 0 -"G6572-MONOMER" "inner membrane protein YcfT" ["YcfT"] "MKQKELWINQIKGLCICLVVIYHSVITFYPHLTTFQHPLSEVLSKCWIYFNLYLAPFRMPVFFFISGYLIRRYIDSVPWGNCLDKRIWNIFWVLALWGVVQWLALSALNQWLAPERDLSNASNAAYADSTGEFLHGMITASTSLWYLYALIVYFVVCKIFSRLALPLFALFVLLSVAVNFVPTPWWGMNSVIRNLPYYSLGAWFGATIMTCVKEVPLRRHLLMASLLTVLAVGAWLFTISLLLSLVSIVVIMKLFYQYEQRFGMRSTSLLNVIGSNTIAIYTTHRILVEIFSLTLLAQMNAARWSPQVELTLLLVYPFVSLFICTVAGLLVRKLSQRAFSDLLFSPPSLPAAVSYSR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6570-MONOMER" "DUF1471 domain-containing multiple stress resistance outer membrane protein BhsA" ["ComC", "YcfR", "BhsA", "outer membrane protein involved in copper permeability, stress resistance and biofilm formation"] "MKNVKTLIAAAILSSMSFASFAAVEVQSTPEGQQKVGTISANAGTNLGSLEEQLAQKADEMGAKSFRITSVTGPNTLHGTAVIYK" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 0 +"G6571-MONOMER" "L,D-transpeptidase LdtC" ["LdtC", "YcfS"] "MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTANIRARYKAQGIELPAVVPAGLDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNIINTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNSAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL" [] ["CCO-PERI-BAC"] 0 [] {} 0 +"G6572-MONOMER" "inner membrane protein YcfT" ["YcfT"] "MKQKELWINQIKGLCICLVVIYHSVITFYPHLTTFQHPLSEVLSKCWIYFNLYLAPFRMPVFFFISGYLIRRYIDSVPWGNCLDKRIWNIFWVLALWGVVQWLALSALNQWLAPERDLSNASNAAYADSTGEFLHGMITASTSLWYLYALIVYFVVCKIFSRLALPLFALFVLLSVAVNFVPTPWWGMNSVIRNLPYYSLGAWFGATIMTCVKEVPLRRHLLMASLLTVLAVGAWLFTISLLLSLVSIVVIMKLFYQYEQRFGMRSTSLLNVIGSNTIAIYTTHRILVEIFSLTLLAQMNAARWSPQVELTLLLVYPFVSLFICTVAGLLVRKLSQRAFSDLLFSPPSLPAAVSYSR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6576-MONOMER" "N-acetyl-D-glucosamine kinase" ["YcfX", "NagK"] "MYYGFDIGGTKIALGVFDSGRQLQWEKRVPTPRDSYDAFLDAVCELVAEADQRFGCKGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLIFNGKPITGKSYITGEFGHMRLPVDALTMMGLDFPLRRCGCGQHGCIENYLSGRGFAWLYQHYYHQPLQAPEIIALYDQGDEQARAHVERYLDLLAVCLGNILTIVDPDLVVIGGGLSNFPAITTQLADRLPRHLLPVARVPRIERARHGDAGGMRGAAFLHLTD" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 "G6577-MONOMER" "protein-lysine deacetylase/desuccinylase/delipoylase" ["YcfY", "CobB", "CobB-L"] "MLSRRGHRLSRFRKNKRRLRERLRQRIFFRDKVVPEAMEKPRVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKLLKGLKAGSIA" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G6578-MONOMER" "putative inner membrane protein YcfZ" ["YcfZ"] "MKKFIILLSLLILLPLTAASKPLIPIMKTLFTDVTGTVPDAEEIAHKAELFRQQTGIAPFIVVLPDINNEASLRQNGKAMLAHASSSLSDVKGSVLLLFTTREPRLIMITNGQVESGLDDKHLGLLIENHTLAYLNADLWYQGINNALAVLQAQILKQSTPPLTYYPHPGQQHENAPPGSTNTLGFIAWAATFILFSRIFYYTTRFIYALKFAVAMTIANMGYQALCLYIDNSFAITRISPLWAGLIGVCTFIAALLLTSKR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6579-MONOMER" "putative inner membrane protein YmfA" ["YmfA"] "MSQDSKVFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKDGSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKWGFIGIMGVIFIAVGLLISMPSSKKSRRKRKSRP" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6578-MONOMER" "putative inner membrane protein YcfZ" ["YcfZ"] "MKKFIILLSLLILLPLTAASKPLIPIMKTLFTDVTGTVPDAEEIAHKAELFRQQTGIAPFIVVLPDINNEASLRQNGKAMLAHASSSLSDVKGSVLLLFTTREPRLIMITNGQVESGLDDKHLGLLIENHTLAYLNADLWYQGINNALAVLQAQILKQSTPPLTYYPHPGQQHENAPPGSTNTLGFIAWAATFILFSRIFYYTTRFIYALKFAVAMTIANMGYQALCLYIDNSFAITRISPLWAGLIGVCTFIAALLLTSKR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6579-MONOMER" "putative inner membrane protein YmfA" ["YmfA"] "MSQDSKVFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKDGSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKWGFIGIMGVIFIAVGLLISMPSSKKSRRKRKSRP" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6580-MONOMER" "phosphatase NudJ" ["YmfB", "NudJ"] "MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTKGVI" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6581-MONOMER" "23S rRNA pseudouridine2457 synthase" ["RluE", "YmfC", "ribosomal large subunit pseudouridine synthase E"] "MRQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6582-MONOMER" "e14 prophage; putative SAM-dependent methyltransferase YmfD" ["YmfD"] "MVLALNYNMHGVNIRSENAAKPHTMPSRYLCEYIRSIEKNGHALDFGCGKLRYSDELISKFDEVTFLDSKRQLEREQIIRGIKTKIIDYVPRYYKNANTVAFEDVDKIIGGYDFILCSNVLSAVPCRDTIDKIVLSIKRLLKSGGETLIVNQYKSSYFKKYETGRKHLYGYIYKNSKSVSYYGLLDELAVQEICSSHGLEILKSWSKAGSSYVTVGSCNAI" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6583-MONOMER" "e14 prophage; uncharacterized protein YmfE" ["YmfE", "e14 prophage; putative inner membrane protein"] "MNNMFEPPKNYNEMLPKLHKATFLNTLIYCILLVIYEYIPLITLPTKYVPPIKDHESFINWALSFGILPCAFAIFAYLISGALDLHNNAAKLLRVRYLWDKHLIIKPLSRRAGVNRKLNKDEAHNVMSNLYYPEVRKIEDKHYIELFWNKVYYFWIFFEFSIIALISFLIIFFCKQMDIFHVEGSLLSLFFFVILSFSVSGIIFALTVKPRTESQVGKIPDDKIKEFFTKNNIN" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6583-MONOMER" "e14 prophage; uncharacterized protein YmfE" ["YmfE", "e14 prophage; putative inner membrane protein"] "MNNMFEPPKNYNEMLPKLHKATFLNTLIYCILLVIYEYIPLITLPTKYVPPIKDHESFINWALSFGILPCAFAIFAYLISGALDLHNNAAKLLRVRYLWDKHLIIKPLSRRAGVNRKLNKDEAHNVMSNLYYPEVRKIEDKHYIELFWNKVYYFWIFFEFSIIALISFLIIFFCKQMDIFHVEGSLLSLFFFVILSFSVSGIIFALTVKPRTESQVGKIPDDKIKEFFTKNNIN" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6585-MONOMER" "e14 prophage; putative excisionase" ["YmfG", "XisE"] "MLQMLTLEEWAAEKYRSNPPSVSTLRRYAKQNLFCPPAMKQGRLWRVREDAELVGELVTPVIKKNDSLLLQRILSNGSQTA" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6586-MONOMER" "e14 prophage; putative protein YmfH" ["YmfH"] "MVNAAQRTRVKVEADNRPSVDTHPPGVQPSPGTGGTRHHNFMLCVVLAVPVFSLVLSGTALFTKQRRVSPDDGLITRPILIAVATGALLCFVEKLTDRAGSIC" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"G6586-MONOMER" "e14 prophage; putative protein YmfH" ["YmfH"] "MVNAAQRTRVKVEADNRPSVDTHPPGVQPSPGTGGTRHHNFMLCVVLAVPVFSLVLSGTALFTKQRRVSPDDGLITRPILIAVATGALLCFVEKLTDRAGSIC" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6587-MONOMER" "e14 prophage; uncharacterized protein YmfI" ["YmfI"] "MNQFYVHVRLFEDTAEQTKKFEELMLNFLYQKTVKESDDSCCRLIPEGYILKSTMNCQQILDQTFSIANSAGVDANIFVCKFEQSACLLPSASLVGNDFVHYDLTPKPIKLDS" [] [] 0 [] {} 0 "G6588-MONOMER" "e14 prophage; uncharacterized protein YmfJ" ["YmfJ"] "MNEQNLKHVIALLLEDAKRLQQIEPNAGTEARILLAKQALKTCGAQAPGRTEFMNFMANTLTPLPCNGEKVSRVYHDTMVKALRIELDGLRRKIVMNEIVTN" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6589-MONOMER" "e14 prophage; putative repressor protein YmfK" ["CohE", "YmfK"] "MKTIHDIRRSNARKLRDGVGGNSSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEKCFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGAWKEVGYSEVDLSTAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQRYLKALNPNWPEPYIKINGNCSIIGTVIFSGKPRRYKIKA" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -2176,7 +2176,7 @@ "G6591-MONOMER" "e14 prophage; uncharacterized protein YmfL" ["YmfL", "e14 prophage; putative DNA-binding transcriptional regulator"] "MGKHHWKIEKQPEWYVKAVRKTIAALPSGYAEAADWLDVTENALFNRLRADGDQIFPLGWAMVLQRAGGTHFIADAVAQSANGVFVSLPDVEDVDNADINQRLLEVIEQIGSYSKQIRSAIEDGVVEPHEKTAINDELYLSISKLQEHAALVYKIFCISESNDARECAAPGVVASIASGCGETNA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6592-MONOMER" "e14 prophage; cell division inhibitor YmfM" ["SfiC", "YmfM"] "MNSLTTHYRRSQLIALPVPGGKAKVEYCYAVNVPGDREIVTHSFAEWAVGDFNRQKETVLCDKLTAGSKITTECPSESFVGSRKHNGLSTSAKVMSMNASARSNSFVVNSGK" [] [] 0 [] {} 0 "G6593-MONOMER" "e14 prophage; chimeric replication protein/phage terminase YmfN" ["YmfN", "e14 prophage; putative DNA-binding transcriptional regulator", "e14 prophage; phage terminase-like protein YmfN"] "MSTKLTGYVWDGCAASGMKLSSVAIMARLADFSNDEGVCWPSIETIARQIGAGMSTVRTAIARLEAEGWLTRKARRQGDGSSPHCAVVDEYHEHATDALYTTMLTGMGARRQPLMWAITTAGYNIEGPCYDKRREVIEMLNGSVPNDELFGIIYTVDEGDDWTDPQVLEKANPNIGVSVYREFLLSQQQRAKNNARLANVFKTKHLNIWASARSAYFNLVSWQSCEDKSLTLEQFEGQPCILAFDLARKLDMNSMARLYTREIDGKTHYYSVAPRFWVPYDTVYSVEKNEDRRTAERFQKWVEMGVLTVTDGAEVDYRYILEEAKAANKISPVSESPIDPFGATGLSHDLADEDLNPVTIIQNYTNMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKTIPGNDDVVKPVKEQAENKIDGAVALIMAVGRAMLYEKEDTLSDHIESYGIRSL" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6594-MONOMER" "e14 prophage; IPR020297 domain-containing protein YmfR" ["YmfR"] "MIMLILAPLVGVLGALLLAYGAWLIYPPAGFVVAGALCLFWSWLVARYLDRTQSSVGGGK" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6594-MONOMER" "e14 prophage; IPR020297 domain-containing protein YmfR" ["YmfR"] "MIMLILAPLVGVLGALLLAYGAWLIYPPAGFVVAGALCLFWSWLVARYLDRTQSSVGGGK" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6595-MONOMER" "e14 prophage; protein BeeE" ["BeeE", "YmfO"] "MFFSGLFQRKSDAPVTTPAELADAIGLSYDTYTGKQISSQRAMRLTAVFSCVRVLAESVGMLPCNLYHLNGSLKQRATGERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKVKAFGEVAELLPVDPGCVVYALGRCQRWPEGDRRECYSAR" [] [] 0 [] {} 0 "G6596-MONOMER" "e14 prophage; putative protein JayE" ["JayE", "YmfP"] "MWYMRWEGVSDGLKVTAGSVIQRDDLVQYTTTDDATSSGGVLRVPIACSSAGAVGNADDGTALILVTPVNGLPSSGVADTLTGGFDTEELETWRARVIERYYWTPQGGADGDYVVWAKEVPGITRAWTYRHLMGTGTVGVMIASSDLINPIPEESTETAARQHIGPLAPVAGSDLYVFRPVAHTVDFHIRVTPDTPEIRAAITAELRSFLLRDGYPQGELKVSRISEAISGANGEYSHQLLAPVDNISIAKNELAVLGTISWT" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6597-MONOMER" "e14 prophage; DUF2313 domain-containing protein YmfQ" ["YmfQ"] "MDVTNDDYIRLLSALLPPGPVWSASDPAIAGAAPSLTRVHQRADALMRELDPRTTTELINRWERLCGLPDECIPAGTQTLRQRQQRLDAKVNLAGGINEDFYLAQLAALGRPDATITRYDKSTFTCSSACTDAVNAPEWRYYWQVNMPATTNSTWMTCGDPCDSALRIWGDTVVECVLNKLCPSHTYVIFKYPE" [] ["CCO-PERI-BAC"] 0 [] {} 0 @@ -2190,7 +2190,7 @@ "G6605-MONOMER" "putative two-component system connector protein YmgA" ["YmgA", "protein involved in biofilm formation"] "MKTSDNERIKYEITGQAVLQILRMKINFSLQTLIKQLLVMKSAEEDAFRRDLIDSIIRDFSNSDSGGPNRRTATADNKSMFNGKKINRIH" [] [] 0 [] {} 0 "G6606-MONOMER" "putative two-component system connector protein AriR" ["YmgB", "AriR", "regulator of acid resistance, influenced by indole"] "MLEDTTIHNAITDKALASYFRSSGNLLEEESAVLGQAVTNLMLSGDNVNNKNIILSLIHSLETTSDILKADVIRKTLEIVLRYTADDM" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6607-MONOMER" "protein YmgC" ["YmgC", "protein involved in biofilm formation"] "MNNSIPERFIFQCALFKNLEREVFMTHGYVDSHIIDQALRLRLKDETSVILSDLYLQILQYIEMHKTTLTDIIINDRESVLS" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6608-MONOMER" "putative cyclic di-GMP phosphodiesterase PdeG" ["PdeG", "YcgG"] "MRNTLIPILVAICLFITGVAILNIQLWYSAKAEYLAGARYAANNINHILEEASQATQTAVNIAGKECNLEEQYQLGTEAALKPHLRTIIILKQGIVWCTSLPGNRVLLSRIPVFPDSNLLLAPAIDTVNRLPILLYQNQFADTRILVTISDQHIRGALNVPLKGVRYVLRVADDIIGPTGDVMTLNGHYPYTEKVHSTKYHFTIIFNPPPLFSFYRLIDKGFGILIFILLIACAAAFLLDRYFNKSATPEEILRRAINNGEIVPFYQPVVNGREGTLRGVEVLARWKQPHGGYISPAAFIPLAEKSGLIVPLTQSLMNQVARQMNAIASKLPEGFHIGINFSASHIISPTFVDECLNFRDSFTRRDLNLVLEVTEREPLNVDESLVQRLNILHENGFVIALDDFGTGYSGLSYLHDLHIDYIKIDHSFVGRVNADPESTRILDCVLDLARKLSISIVAEGVETKEQLDYLNQNYITFQQGYYFYKPVTYIDLVKIILSKPKVKVVVE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 +"G6608-MONOMER" "putative cyclic di-GMP phosphodiesterase PdeG" ["PdeG", "YcgG"] "MRNTLIPILVAICLFITGVAILNIQLWYSAKAEYLAGARYAANNINHILEEASQATQTAVNIAGKECNLEEQYQLGTEAALKPHLRTIIILKQGIVWCTSLPGNRVLLSRIPVFPDSNLLLAPAIDTVNRLPILLYQNQFADTRILVTISDQHIRGALNVPLKGVRYVLRVADDIIGPTGDVMTLNGHYPYTEKVHSTKYHFTIIFNPPPLFSFYRLIDKGFGILIFILLIACAAAFLLDRYFNKSATPEEILRRAINNGEIVPFYQPVVNGREGTLRGVEVLARWKQPHGGYISPAAFIPLAEKSGLIVPLTQSLMNQVARQMNAIASKLPEGFHIGINFSASHIISPTFVDECLNFRDSFTRRDLNLVLEVTEREPLNVDESLVQRLNILHENGFVIALDDFGTGYSGLSYLHDLHIDYIKIDHSFVGRVNADPESTRILDCVLDLARKLSISIVAEGVETKEQLDYLNQNYITFQQGYYFYKPVTYIDLVKIILSKPKVKVVVE" ["CCO-PM-BAC-NEG"] ["CCO-PERI-BAC", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "G6609-MONOMER" "putative transporter component, N-terminal fragment" ["YcgH", "YcgH_1"] "MKLKKLPGFSLGLIALAVGNAYATQLLDDYSIISYMTDEESPIEIKDNNPISNGEYLTTEDESHAVKVDDGVTGYINNASVMTSGDGSYGISVDSQNKVLYISDSDIKTSGSVSDKENGGITASAVVSEFGGTIFMNGDNSVESGGAYSAGLLSQVNDSEKMVNNTRLETTDKTNIVTSGENAVGVLACSSPGESRTCVDAVDDEVSDSNSYEVISRADLKMNGGSITTNGINSYGAYANGKKAYINLDYVALETVADGSYAVAIRQGNIDIKNSSITTTGTKAPIAKIYNGGELFFSNVTAVSKQDKGISIDASNIDSQAKIALLSVELSSALDSIDVNKTTTDVSILNRSIITPGNNVLVNNTGGDLNIISSDSILNGATKLVSGTTTLKLSENTIWNMKDDSVVTHLTNSDSIINLSYDDGQTFTQGKTLTVKGNYVGNNGQLNIRTVLGDDKSATDRLIVEGNTSGSTTVYVKNAGGSGAATLNGIELITVNGDESPADAFR*GDARIAAGAFEYQLKQQGKNWYLTSYQSVNEEDNSSEGNSESTETPTPVLRPEAGSYVANLAAANTLFVMRLNDRAGETRYIDPVTEQERSSRLWLRQIGGHNAWRDSNGQLRTTSHRYVSQLGGDLLTGGFTDSDSWRLGVMAGYARDYNLTHSSVSDYRSKGSVRGYSAGLYATWFADDISKKGAYIDSWAQYSWFKNSVKGDELAYESYSAKGATVSLEAGYGFALNKSFGLEAAKYTWIFQPQAQAIWMGVDHNAHTEANGSRIENDANNNIQTRLGFRTFIRTQEKNSGPHGDDFEPFVEMNWIHNSKDFAVSMNGVKVEQDGASNLGEIKLGVNGNLNPAASVWGMWACSWVIMATMTPQ*WWA*NIS" [] [] 0 [] {} 0 "G6611-MONOMER" "PF16456 family protein YmgD" ["YmgD"] "MKKFALLAGLFVFAPMTWAQDYNIKNGLPSETYITCAEANEMAKTDSAQVAEIVAVMGNASVASRDLKIEQSPELSAKVVEKLNQVCAKDPQMLLITAIDDTMRAIGKK" [] [] 0 [] {} 0 "G6612-MONOMER" "PF13436 family protein YmgG" ["YmgG"] "MKKKILAFGLISALFCSTPAMADMNRTTKGALLGAGVGLLTGNGVNGVLKGAAVGAGVGAVTEKGRDGKNARKGAKVGAAVGAVTGVLTGNGLEGAIKGAVIGGTGGAILGKMK" [] ["CCO-MEMBRANE"] 0 [] {} 0 @@ -2201,21 +2201,21 @@ "G6618-MONOMER" "putative metal-chelating domain-containing protein YcgN" ["YcgN", "PF03692 family protein YcgN"] "MAEHLMSDVPFWQSKTLDEMSDAEWESLCDGCGQCCLHKLMDEDTDEIYFTNVACRQLNIKTCQCRNYERRFEFEPDCIKLTRENLPTFEWLPMTCAYRLLAEGKDLPAWHPLLTGSKAAMHGERISVRHIAVKESEVIDWQDHILNKPDWAQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6619-MONOMER" "hemolysin E" ["YcgD", "Hpr", "SheA", "ClyA", "HlyE"] "MTEIVADKTVEVVKNAIETADGALDLYNKYLDQVIPWQTFDETIKELSRFKQEYSQAASVLVGDIKTLLMDSQDKYFEATQTVYEWCGVATQLLAAYILLFDEYNEKKASAQKDILIKVLDDGITKLNEAQKSLLVSSQSFNNASGKLLALDSQLTNDFSEKSSYFQSQVDKIRKEAYAGAAAGVVAGPFGLIISYSIAAGVVEGKLIPELKNKLKSVQNFFTTLSNTVKQANKDIDAAKLKLTTEIAAIGEIKTETETTRFYVDYDDLMLSLLKEAAKKMINTCNEYQKRHGKKTLFEVPEV" [] ["CCO-MEMBRANE", "CCO-EXTRACELLULAR", "CCO-PERI-BAC"] 1 [] {} 0 "G6621-MONOMER" "murein tetrapeptide carboxypeptidase" ["YcgQ", "LdcA", "L,D-carboxypeptidase A"] "MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTETERLEDLNSLARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDFTAIQCGLLAHGNVITFSGPMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPTCRAEGTLWGGNLAMLISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYHAGILPRQKAIILGSFSGSTPNDYDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAHAILNNTREGTQLTISGHPVLKM" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"G6622-MONOMER" "lytic murein transglycosylase E" ["YcgP", "SltZ", "EmtA", "MltE"] "MKLRWFAFLIVLLAGCSSKHDYTNPPWNAKVPVQRAMQWMPISQKAGAAWGVDPQLITAIIAIESGGNPNAVSKSNAIGLMQLKASTSGRDVYRRMGWSGEPTTSELKNPERNISMGAAYLNILETGPLAGIEDPKVLQYALVVSYANGAGALLRTFSSDRKKAISKINDLDADEFLEHVARNHPAPQAPRYIYKLEQALDAM" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"G6622-MONOMER" "lytic murein transglycosylase E" ["YcgP", "SltZ", "EmtA", "MltE"] "MKLRWFAFLIVLLAGCSSKHDYTNPPWNAKVPVQRAMQWMPISQKAGAAWGVDPQLITAIIAIESGGNPNAVSKSNAIGLMQLKASTSGRDVYRRMGWSGEPTTSELKNPERNISMGAAYLNILETGPLAGIEDPKVLQYALVVSYANGAGALLRTFSSDRKKAISKINDLDADEFLEHVARNHPAPQAPRYIYKLEQALDAM" [] ["CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] 0 [] {} 0 "G6623-MONOMER" "flagellar brake protein YcgR" ["YcgR", "molecular brake that regulates flagellar motility in response to c-di-GMP"] "MSHYHEQFLKQNPLAVLGVLRDLHKAAIPLRLSWNGGQLISKLLAITPDKLVLDFGSQAEDNIAVLKAQHITITAETQGAKVEFTVEQLQQSEYLQLPAFITVPPPTLWFVQRRRYFRISAPLHPPYFCQTKLADNSTLRFRLYDLSLGGMGALLETAKPAELQEGMRFAQIEVNMGQWGVFHFDAQLISISERKVIDGKNETITTPRLSFRFLNVSPTVERQLQRIIFSLEREAREKADKVRD" [] ["CCO-CYTOSOL", "CCO-CELL-PROJECTION"] 0 [] {} 0 "G6624-MONOMER" "PF04226 family protein YmgE" ["Tag", "YmgE"] "MGIIAWIIFDLIAGIIAKLIMPGRDGGGFFLTCILGIVGAVVGGWLATMFGIGGSISGFNLHSFLVAVVGAILVLGIFRLLRRE" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6625-MONOMER" "uncharacterized protein YcgY" ["YcgY"] "MIQKINILDSSQSGVKNGADSEAVLAALIEHLELINPSGRLSQNTRSAMLQLREEEWSEFFFWLLNSLECLDYVIINLTPESKKTLMSEHRNNIQVAIDALYSQRRRKSPGDESETLTRRNDAIFGNHVWQTFAQYFPPGLEKPSV" [] [] 0 [] {} 0 "G6627-MONOMER" "dihydroxyacetone kinase subunit K" ["YcgT", "DhaK"] "MKKLINDVQDVLDEQLAGLAKAHPSLTLHQDPVYVTRADAPVAGKVALLSGGGSGHEPMHCGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRKLNNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFDTLLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRLTTRCQQAGLTIERNLIGAYCTSLDMTGFSITLLKVDDETLALWDAPVHTPALNWGK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "G6628-MONOMER" "DNA-binding transcriptional dual regulator DhaR" ["YcgU", "DhaR"] "MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRRV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6629-MONOMER" "putative autotransporter adhesin YcgV" ["YcgV"] "MGIKQHNGNTKADRLAELKIRSPSIQLIKFGAIGLNAIIFSPLLIAADTGSQYGTNITINDGDRITGDTADPSGNLYGVMTPAGNTPGNINLGNDVTVNVNDASGYAKGIIIQGKNSSLTANRLTVDVVGQTSAIGINLIGDYTHADLGTGSTIKSNDDGIIIGHSSTLTATQFTIENSNGIGLTINDYGTSVDLGSGSKITTDGSTGVYIGGLNGNNANGAARFTATDLTIDVQGYSAMGINVQKNSVVDLGTNSTIKTNGDNAHGLWSFGQVSANALTVDVTGAAANGVEVRGGTTTIGADSHISSAQGGGLVTSGSDAIINFTGTAAQRNSIFSGGSYGASAQTATAVVNMQNTDITVDRNGSLALGLWALSGGRITGDSLAITGAAGARGIYAMTNSQIDLTSDLVIDMSTPDQMAIATQHDDGYAASRINASGRMLINGSVLSKGGLINLDMHPGSVWTGSSLSDNVNGGKLDVAMNNSVWNVTSNSNLDTLALSHSTVDFASHGSTAGTFATLNVENLSGNSTFIMRADVVGEGNGVNNKGDLLNISGSSAGNHVLAIRNQGSEATTGNEVLTVVKTTDGAASFSASSQVELGGYLYDVRKNGTNWELYASGTVPEPTPNPEPTPAPAQPPIVNPDPTPEPAPTPKPTTTADAGGNYLNVGYLLNYVENRTLMQRMGDLRNQSKDGNIWLRSYGGSLDSFASGKLSGFDMGYSGIQFGGDKRLSDVMPLYVGLYIGSTHASPDYSGGDGTARSDYMGMYASYMAQNGFYSDLVIKASRQKNSFHVLDSQNNGVNANGTANGMSISLEAGQRFNLSPTGYGFYIEPQTQLTYSHQNEMTMKASNGLNIHLNHYESLLGRASMILGYDITAGNSQLNVYVKTGAIREFSGDTEYLLNNSREKYSFKGNGWNNGVGVSAQYNKQHTFYLEADYTQGNLFDQKQVNGGYRFSF" [] ["CCO-EXTRACELLULAR", "CCO-MEMBRANE"] 0 [] {} 0 -"G6630-MONOMER" "SirB family protein YchQ" ["YchQ"] "MTSFSTLLSVHLISIALSVGLLTLRFWLRYQKHPQAFARWTRIVPPVVDTLLLLSGIALMAKAHILPFSGQAQWLTEKLFGVIIYIVLGFIALDYRRMHSQQARIIAFPLALVVLYIIIKLATTKVPLLG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6630-MONOMER" "SirB family protein YchQ" ["YchQ"] "MTSFSTLLSVHLISIALSVGLLTLRFWLRYQKHPQAFARWTRIVPPVVDTLLLLSGIALMAKAHILPFSGQAQWLTEKLFGVIIYIVLGFIALDYRRMHSQQARIIAFPLALVVLYIIIKLATTKVPLLG" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6631-MONOMER" "putative uncharacterized protein YchS" ["YchS"] "MVVGEGLLSAARFALRVVACGNALSLALKSNLGRSFSSFPAWAEYLIADSFENSGAFESDGGGGRITQRCALRPSGRCLRQRSLADARAEP" [] ["CCO-MEMBRANE"] 0 [] {} 0 "G6632-MONOMER" "putative transposase InsZ" ["InsZ", "YchG"] "MPLLNDLLDFSDHPLMPPPSAQLFAEHLPTEWIQHCLTLSAHATVRRRRLPGDMVIWMVVQ*ANYRCCSPSEPERGWRSGDEPAGPQRCHPGASARGGRPSGMALPPDRTDRGAERYLKDDWHGLQLFAIDGAQFRTPDKPELREYYGSANTSTKRQNAYPVMRLVALMNLGSHILLNAVTAPYRQSETVLAHSMLATIPDNSITLFDKLFYSEDLLLTLNQKGCNRHWLLPAWKNIASEMIELGNTASPGTIPKRLEHLRGALEVVFITKRPRPSRPRSVKISKTRYPVKHSAAPLK" [] [] 0 [] {} 0 "G6633-MONOMER" "DUF440 domain-containing protein YciU" ["YciU"] "MDMDLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWQEHVDFDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKLCHIIWRE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6634-MONOMER" "RNase AM" ["TrpH", "YciV", "RNA/ssDNA 5'→3' exonuclease", "Rnm"] "MSDTNYAVIYDLHSHTTASDGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIPGVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEGAQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHHSGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNERTQLAALARQHHLWASQGSDFHQPCPWIELGRKLWLPAGVEGVWQLWEQPQNTTEREL" [] ["CCO-CYTOSOL"] 0 [] {"MN+2": 3} 0 "G6635-MONOMER" "putative RNA-binding protein YciO" ["YciO"] "MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6636-MONOMER" "DUF2207 domain-containing protein YciQ" ["YciP", "YciQ"] "MAGKFRCILLLIAGLFVSSLSYAENTEIPSYEEGISLFDVEATLQPDGVLDIKENIHFQARNQQIKHGFYRDLPRLWMQPDGDAALLNYHIVGVTRDGIPEPWHLDWHIGLMSIVVGDKQRFLPQGDYHYQIHYQVKNAFLREGDSDLLIWNVTGNHWPFEIYKTRFSLQFSNIAGNPFSEIDLFTGEEGDTYRNGRILEDGRIESRDPFYREDFTVLYRWPHALLSNASAPQTTNIFSHLLLPSTSSLLIWFPCLFLVCGWLYLWKRRPQFTPVDVIETDVIPPDYTPGMLRLDAKLVYDDKGFCADIVNLIVKGKIHLEDQSDKNQQILIRVNEGATRNNAVLLPAEQLLLEALFRKGDKVVLTGRRNRVLRRAFLRMQKFYLPRKKSSFYRSDTFLQWGGLAILAVILYGNLSPVGWAGMSLVGDMFIMICWIIPFLFCSLELLFARDDDKPCVNRVIITLFLPLICSGVAFYSLYINVGDVFFYWYMPAGYFTAVCLTGYLTGMGYIFLPKFTQTGQQRYAHGEAIVNYLARKEAATHSGRRRKGETRKLDYALLGWAISANLGREWALRIAPSLSSAIRAPEIARNGVLFSLQTHLSCGANTSLLGRSYSGGGAGGGAGGGGGGGW" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6637-MONOMER" "lipopolysaccharide assembly protein A" ["LapA", "YciS"] "MKYLLIFLLVLAIFVISVTLGAQNDQQVTFNYLLAQGEYRISTLLAVLFAAGFAIGWLICGLFWLRVRVSLARAERKIKRLENQLSPATDVAVVPHSSAAKE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6637-MONOMER" "lipopolysaccharide assembly protein A" ["LapA", "YciS"] "MKYLLIFLLVLAIFVISVTLGAQNDQQVTFNYLLAQGEYRISTLLAVLFAAGFAIGWLICGLFWLRVRVSLARAERKIKRLENQLSPATDVAVVPHSSAAKE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6638-MONOMER" "DNA-binding transcriptional dual regulator YciT" ["YciT", "DeoT"] "MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSDDVETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSYIAHLLKDAPCEVILLGGVYQKKSESMVGPLTRQCIQQVHFSKAFIGIDGWQPETGFTGRDMMRTDVVNAVLEKECEAIVLTDSSKFGAVHSYSIGPVERFNRVITDSKIRASDLMHLEHSKLTIHVVDI" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6639-MONOMER" "cyclic di-GMP phosphodiesterase PdeR" ["PdeR", "Gmr", "YciR"] "MKTVRESTTLYNFLGSHNPYWRLTESSDVLRFSTTETTEPDRTLQLSAEQAARIREMTVITSSLMMSLTVDESDLSVHLVGRKINKREWAGNASAWHDTPAVARDLSHGLSFAEQVVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQSVFKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGINLRVAVNISARQLADQTIFTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLTKNGINERQGFLFAKPMPAVAFERWYKRYLKRA" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6640-MONOMER" "putative peroxidase YciW" ["YciW"] "MEQRHITGKSHWYHETQSSTTEYDVLPLVPEAAKVSDPFLLDVILEKETLAPFLSWLDPARVLAVDLFPDQLTVTRSQTFTAYERLSTALTVAQVCGVQRLCNYYSARLTPLPGPDSTRESNHRLAQITQYARQLASSPSIIDNRSRQHLNDVGLTAWDCVIISQIIGFIGFQARTIATFQAYLGHPVRWLPGLEIQNYADASLFADESLRWRSSYEVEKLPEEHTKSSTAELCQLAEILSLHPISLSLLEKLLNSTRGNTQPDNQLAALLCARINGSPACFATCMDSSNEYKKISTLMRKGENEINQWADRHSVERATVQAIQWLTRAPDRFSAAQFSPLLEHEKSSTQIINLLVWSGLCGWINRLKIALGETY" [] [] 0 [] {} 0 @@ -2230,29 +2230,29 @@ "G6653-MONOMER" "D-glucoside 3-dehydrogenase" ["YcjS"] "MKSAMTSSPLRVAIIGAGQVADKVHASYYCTRNDLELVAVCDSRLSQAQALAEKYGNASVWDDPQAMLLAVKPDVVSVCSPNRFHYEHTLMALEAGCHVMCEKPPAMTPEQAREMCDTARKLGKVLAYDFHHRFALDTQQLREQVTNGVLGEIYVTTARALRRCGVPGWGVFTNKELQGGGPLIDIGIHMLDAAMYVLGFPAVKSVNAHSFQKIGTQKSCGQFGEWDPATYSVEDSLFGTIEFHNGGILWLETSFALNIREQSIMNVSFCGDKAGATLFPAHIYTDNNGELMTLMQREIADDNRHLRSMEAFINHVQGKPVMIADAEQGYIIQQLVAALYQSAETGTRVEL" [] [] 0 [] {} 0 "G6654-MONOMER" "kojibiose phosphorylase" ["YcjT"] "MTRPVTLSEPHFSQHTLNKYASLMAQGNGYLGLRASHEEDYTRQTRGMYLAGLYHRAGKGEINELVNLPDVVGMEIAINGEVFSLSHEAWQRELDFASGELRRNVVWRTSNGSGYTIASRRFVSADQLPLIALEITITPLDADASVLISTGIDATQTNHGRQHLDETQVRVFGQHLMQGSYTTQDGRSDVAISCCCKVSGDVQQCYTAKERRLLQHTSAQLHAGETMTLQKLVWIDWRDDRQAALDEWGSASLRQLEMCAQQSYDQLLAASTENWRQWWQKRRITVNGGEAHDQQALDYALYHLRIMTPAHDERSSIAAKGLTGEGYKGHVFWDTEVFLLPFHLFSDPTVARSLLRYRWHNLPGAQEKARRNGWQGALFPWESARSGEEETPEFAAINIRTGLRQKVASAQAEHHLVADIAWAVIQYWQTTGDESFIAHEGMALLLETAKFWISRAVRVNDRLEIHDVIGPDEYTEHVNNNAYTSYMARYNVQQALNIARQFGCSDDAFIHRAEMFLKELWMPEIQPDGVLPQDDSFMAKPAINLAKYKAAAGKQTILLDYSRAEVNEMQILKQADVVMLNYMLPEQFSAASCLANLQFYEPRTIHDSSLSKAIHGIVAARCGLLTQSYQFWREGTEIDLGADPHSCDDGIHAAATGAIWLGAIQGFAGVSVRDGELHLNPALPEQWQQLSFPLFWQGCELQVTLDAQRIAIRTSAPVSLRLNGQLITVAEESVFCLGDFILPFNGTATKHQEDE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6655-MONOMER" "β-phosphoglucomutase" ["YcjU", "PgmB"] "MKLQGVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESLKGISRDESLRRILQHGGKEGDFNSQERAQLAYRKNLLYVHSLRELTVNAVLPGIRSLLADLRAQQISVGLASVSLNAPTILAALELREFFTFCADASQLKNSKPDPEIFLAACAGLGVPPQACIGIEDAQAGIDAINASGMRSVGIGAGLTGAQLLLPSTESLTWPRLSAFWQNV" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 2} 0 -"G6657-MONOMER" "outer membrane porin G" ["OmpG"] "MKKLLPCTALVMCAGMACAQAEERNDWHFNIGAMYEIENVEGYGEDMDGLAEPSVYFNAANGPWRIALAYYQEGPVDYSAGKRGTWFDRPELEVHYQFLENDDFSFGLTGGFRNYGYHYVDEPGKDTANMQRWKIAPDWDVKLTDDLRFNGWLSMYKFANDLNTTGYADTRVETETGLQYTFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRWSNWDWQDDIEREGHDFNRVGLFYGYDFQNGLSVSLEYAFEWQDHDEGDSDKFHYAGVGVNYSF" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"G6657-MONOMER" "outer membrane porin G" ["OmpG"] "MKKLLPCTALVMCAGMACAQAEERNDWHFNIGAMYEIENVEGYGEDMDGLAEPSVYFNAANGPWRIALAYYQEGPVDYSAGKRGTWFDRPELEVHYQFLENDDFSFGLTGGFRNYGYHYVDEPGKDTANMQRWKIAPDWDVKLTDDLRFNGWLSMYKFANDLNTTGYADTRVETETGLQYTFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRWSNWDWQDDIEREGHDFNRVGLFYGYDFQNGLSVSLEYAFEWQDHDEGDSDKFHYAGVGVNYSF" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 0 "G6658-MONOMER" "DNA-binding transcriptional repressor YcjW" ["YcjW", "putative LacI-type DNA-binding transcriptional regulator YcjW"] "MSPTIYDIARVAGVSKSTVSRVLNKQTNISPEAREKVLRAIEELQYQPNKLARALTSSGFDAIMVISTRSTKTTAGNPFFSEVLHAITAKAEEEGFDVILQTSHNPAEDLQKCESKIKQKMIKGIIMLSSPADESFFAQLDKYDIPVVVIGKVEGQYAHVYSVDTDNFGDSIALTDALIESGHQNIACLHAPLDVHVSVDRVNGYKQSLAAHNIAVRDEWIVDGGYTHETALKAARQLLSQSPLPEAVFATDSLKLMSIYRAAAEKNIAIPQQLAVVGYSNETLSFILTPAPGGIDVPTQELGQQSCELLFRLISGKPSPQNITVATHMTLK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6659-MONOMER" "DUF463 domain-containing protein YcjX" ["YcjX"] "MKRLKNELNALVNRGVDRHLRLAVTGLSRSGKTAFITAMVNQLLNIHAGARLPLLSAVREERLLGVKRIPQRDFGIPRFTYDEGLAQLYGDPPAWPTPTRGVSEIRLALRFKSNDSLLRHFKDTSTLYLEIVDYPGEWLLDLPMLAQDYLSWSRQMTGLLNGQRGEWSAKWRMMSEGLDPLAPADENRLADIAAAWTDYLHHCKEQGLHFIQPGRFVLPGDMAGAPALQFFPWPDVDTWGESKLAQADKHTNAGMLRERFNYYCEKVVKGFYKNHFLRFDRQIVLVDCLQPLNSGPQAFNDMRLALTQLMQSFHYGQRTLFRRLFSPVIDKLLFAATKADHVTIDQHANMVSLLQQLIQDAWQNAAFEGISMDCLGLASVQATTSGIIDVNGEKIPALRGNRLSDGAPLTVYPGEVPARLPGQAFWDKQGFQFEAFRPQVMDVDKPLPHIRLDAALEFLIGDKLR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6660-MONOMER" "lipid hydroperoxide peroxidase" ["YzzJ", "Tpx", "p20", "scavengase", "scavengase p20", "thiol peroxidase"] "MSQTVHFQGNPVTVANSIPQAGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQLVDEITTEPDYEAALAVLKA" ["CCO-CYTOSOL"] ["CCO-PERI-BAC", "CCO-CYTOSOL"] 1 [] {} 1 "G6661-MONOMER" "L-Ala-D/L-Glu epimerase" ["YcjH", "YcjG"] "MRTVKVFEEAWPLHTPFVIARGSRSEARVVVVELEEEGIKGTGECTPYPRYGESDASVMAQIMSVVPQLEKGLTREELQKILPAGAARNALDCALWDLAARRQQQSLADLIGITLPETVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNHLISERMVAIRTAVPDATLIVDANESWRAEGLAARCQLLADLGVAMLEQPLPAQDDAALENFIHPLPICADESCHTRSNLKALKGRYEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISAALPLVPQVSFADLDGPTWLAVDVEPALQFTTGELHL" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 -"G6662-MONOMER" "murein tripeptide amidase A" ["YcjI", "MpaA"] "MTVTRPRAERGAFPPGTEHYGRSLLGAPLIWFPAPAASRESGLILAGTHGDENSSVVTLSCALRTLTPSLRRHHVVLCVNPDGCQLGLRANANGVDLNRNFPAANWKEGETVYRWNSAAEERDVVLLTGDKPGSEPETQALCQLIHRIQPAWVVSFHDPLACIEDPRHSELGEWLAQAFELPLVTSVGYETPGSFGSWCADLNLHCITAEFPPISSDEASEKYLFAMANLLRWHPKDAIRPS" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 +"G6662-MONOMER" "murein tripeptide amidase A" ["YcjI", "MpaA"] "MTVTRPRAERGAFPPGTEHYGRSLLGAPLIWFPAPAASRESGLILAGTHGDENSSVVTLSCALRTLTPSLRRHHVVLCVNPDGCQLGLRANANGVDLNRNFPAANWKEGETVYRWNSAAEERDVVLLTGDKPGSEPETQALCQLIHRIQPAWVVSFHDPLACIEDPRHSELGEWLAQAFELPLVTSVGYETPGSFGSWCADLNLHCITAEFPPISSDEASEKYLFAMANLLRWHPKDAIRPS" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6663-MONOMER" "putative hydrolase YcjY" ["YcjY"] "MMNNKVSFTNSNNPTISLSAVIYFPPKFDETRQYQAIVLSHPGGGVKEQTAGTYAKKLAEKGFVTIAYDASYQGESGGEPRQLENPYIRTEDISAVIDYLTTLSYVDNTRIGAMGICAGAGYTANAAIQDRRIKAIGTVSAVNIGSIFRNGWENNVKSIDALPYVEAGSNARTSDISSGEYAIMPLAPMKESDAPNEELRQAWEYYHTPRAQYPTAPGYATLRSLNQIITYDAYHMAEVYLTQPTQIVAGSQAGSKWMSDDLYDRASSQDKRYHIVEGANHMDLYDGKAYVAEAISVLAPFFEETL" [] [] 0 [] {} 0 "G6664-MONOMER" "DNA-binding transcriptional repressor PgrR" ["PgrR", "YcjZ"] "MKREEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLLSVLGPMLHDIDSAMASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLTIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLIDHQAINLYLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPYDQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRLKYKGAV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6665-MONOMER" "murein tripeptide ABC transporter periplasmic binding protein" ["YnaH", "MppA"] "MKHSVSVTCCALLVSSISLSYAAEVPSGTVLAEKQELVRHIKDEPASLDPAKAVGLPEIQVIRDLFEGLVNQNEKGEIVPGVATQWKSNDNRIWTFTLRDNAKWADGTPVTAQDFVYSWQRLVDPKTLSPFAWFAALAGINNAQAIIDGKATPDQLGVTAVDAHTLKIQLDKPLPWFVNLTANFAFFPVQKANVESGKEWTKPGNLIGNGAYVLKERVVNEKLVVVPNTHYWDNAKTVLQKVTFLPINQESAATKRYLAGDIDITESFPKNMYQKLLKDIPGQVYTPPQLGTYYYAFNTQKGPTADQRVRLALSMTIDRRLMTEKVLGTGEKPAWHFTPDVTAGFTPEPSPFEQMSQEELNAQAKTLLSAAGYGPQKPLKLTLLYNTSENHQKIAIAVASMWKKNLGVDVKLQNQEWKTYIDSRNTGNFDVIRASWVGDYNEPSTFLTLLTSTHSGNISRFNNPAYDKVLAQASTENTVKARNADYNAAEKILMEQAPIAPIYQYTNGRLIKPWLKGYPINNPEDVAYSRTMYIVKH" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 -"G6668-MONOMER" "DUF2534 domain-containing protein YnaJ" ["YnaJ"] "MIMAKLKSAKGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIPLSEWTTSMYVIQSSMIFVYSLVFTVLLAIPLGIYFLGGEEQ" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6668-MONOMER" "DUF2534 domain-containing protein YnaJ" ["YnaJ"] "MIMAKLKSAKGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIPLSEWTTSMYVIQSSMIFVYSLVFTVLLAIPLGIYFLGGEEQ" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6669-MONOMER" "p-aminobenzoyl-glutamate hydrolase subunit B" ["YdaI", "AbgB"] "MQEIYRFIDDAIEADRQRYTDIADQIWDHPETRFEEFWSAEHLASALESAGFTVTRNVGNIPNAFIASFGQGKPVIALLGEYDALAGLSQQAGCAQPTSVTPGENGHGCGHNLLGTAAFAAAIAVKKWLEQYGQGGTVRFYGCPGEEGGSGKTFMVREGVFDDVDAALTWHPEAFAGMFNTRTLANIQASWRFKGIAAHAANSPHLGRSALDAVTLMTTGTNFLNEHIIEKARVHYAITNSGGISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAKIAEGAALMTETTVECRFDKACSSYLPNRTLENAMYQALSHFGTPEWNSEELAFAKQIQATLTSNDRQNSLNNIAATGGENGKVFALRHRETVLANEVAPYAATDNVLAASTDVGDVSWKLPVAQCFSPCFAVGTPLHTWQLVSQGRTSIAHKGMLLAAKTMAATTVNLFLDSGLLQECQQEHQQVTDTQPYHCPIPKNVTPSPLK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "G6670-MONOMER" "p-aminobenzoyl-glutamate hydrolase subunit A" ["YdaJ", "AbgA"] "MESLNQFVNSLAPKLSHWRRDFHHYAESGWVEFRTATLVAEELHQLGYSLALGREVVNESSRMGLPDEFTLQREFERARQQGALAQWIAAFEGGFTGIVATLDTGRPGPVMAFRVDMDALDLSEEQDVSHRPYRDGFASCNAGMMHACGHDGHTAIGLGLAHTLKQFESGLHGVIKLIFQPAEEGTRGARAMVDAGVVDDVDYFTAVHIGTGVPAGTVVCGSDNFMATTKFDAHFTGTAAHAGAKPEDGHNALLAAAQATLALHAIAPHSEGASRVNVGVMQAGSGRNVVPASALLKVETRGASDVINQYVFDRAQQAIQGAATMYGVGVETRLMGAATASSPSPQWVAWLQSQAAQVAGVNQAIERVEAPAGSEDATLMMARVQQHQGQASYVVFGTQLAAGHHNEKFDFDEQVLAIAVETLARTALNFPWTRGI" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "G6671-MONOMER" "putative LysR-type DNA-binding transcriptional regulator AbgR" ["AbgR"] "MAFQVKIHQIRAFVEVARQGSIRGASRMLNMSQPALSKSIQELEEGLAAQLFFRRSKGVTLTDAGESFYQHASLILEELRAAQEDIRQRQGQLAGQINIGMGASISRSLMPAVISRFHQQHPQVKVRIMEGQLVSMINELRQGELDFTINTYYQGPYDHEFTFEKLLEKQFAIFCRPGHPAIGARSIKQLLDYSWTMPTPHGSYYKQLSELLDDQAQTPQVGVVCETFSACISLVAKSDFLSKLPEEMGCDPLHGQGLVMLPVSEILPKAAYYLIQRRDSRQTPLTASLITQFRRECGYLQS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6672-MONOMER" "DNA endonuclease SmrA" ["SmrA", "YdaL", "conserved protein with endonuclease activity SmrA"] "MNLDDKSLFLDAMEDVQPLKRATDVHWHPTRNQRAPQRIDTLQLDNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRKTAQAKQENWERHAKRSR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6673-MONOMER" "diguanylate cyclase DgcM" ["DgcM", "YdaM"] "MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAAKLLMQDLTFSQLRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRKEEETALSCRLVLRKLTETEPVIIFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAALNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQTYAGPIEIYGDKLMLCIVHDITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLAA" [] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 1 -"G6674-MONOMER" "Zn2+:H+ symporter" ["ZntB", "YdaN"] "MEAIKGSDVNVPDAVFAWMLDGRGGVKPLENTDVIDEAHPCWLHLNYVHHDSAQWLATTPLLPNNVRDALAGESTRPRVSRLGEGTLITLRCINGSTDERPDQLVAMRVYMDGRLIVSTRQRKVLALDDVVSDLEEGTGPTDCGGWLVDVCDALTDHSSEFIEQLHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDQRRRMQDIADRLGRGLDEIDACIARTGVMADEIAQVMQENLARRTYTMSLMAMVFLPSTFLTGLFGVNLGGIPGGGWQFGFSIFCILLVVLIGGVALWLHRSKWL" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"G6674-MONOMER" "Zn2+:H+ symporter" ["ZntB", "YdaN"] "MEAIKGSDVNVPDAVFAWMLDGRGGVKPLENTDVIDEAHPCWLHLNYVHHDSAQWLATTPLLPNNVRDALAGESTRPRVSRLGEGTLITLRCINGSTDERPDQLVAMRVYMDGRLIVSTRQRKVLALDDVVSDLEEGTGPTDCGGWLVDVCDALTDHSSEFIEQLHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDQRRRMQDIADRLGRGLDEIDACIARTGVMADEIAQVMQENLARRTYTMSLMAMVFLPSTFLTGLFGVNLGGIPGGGWQFGFSIFCILLVVLIGGVALWLHRSKWL" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6675-MONOMER" "tRNA cytosine32 2-sulfurtransferase TtcA" ["TtcA", "YdaO", "tRNA C32 thiolase"] "MQENQQITKKEQYNLNKLQKRLRRNVGEAIADFNMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSDDGKHIVIRPLAYCREKDIQRFADAKAFPIIPCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKGITHGSEVVNGGDLAFDREEIPLQPACWQPEEDENQLDELRLNVVEVK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 1 "G6676-MONOMER" "Rac prophage; putative integrase" ["YdaP", "IntR"] "MSKLPTGVEIRGRYIRIWFMFRGKRCRETLKGWEITNSNIKKAGNLRALIVHEINSGEFEYLRRFPQSSTGAKMVTTRVIKTFGELCDIWTKIKETELTTNTMKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLHGETLYLDNPRSNKKGRTVRTVDNYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPDPLSKTEFNALMESEKGQSQNLWKFAVYSGLRHGELAALAWEDVDLEKGIVNVRRNLTILDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVFMPRVCNGKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHTRHTFACWLLTAGANPAFIASQMGHETAQMVYEIYGMWIDDMNDEQIAMLNARLS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6677-MONOMER" "Rac prophage; excisionase" ["XisR", "YdaQ"] "MAQVIFNEEWMVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKRGIIWYNYPKINQFIKDS" [] [] 0 [] {} 0 "G6679-MONOMER" "Rac prophage; uncharacterized protein YdaG" ["YdaG", "GatA"] "MVHYEVVQYLMDCCGITYNQAVQALRSNDWDLWQAEVAIRSNKM" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6680-MONOMER" "Rac prophage; DNA-binding transcriptional repressor RacR" ["RacR", "YdaR", "RarC", "DicA"] "MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWRFFSDVVGPEHWGLNEYPIPTPTNSDTKSELLDINNLYQAASDEIRAIVAFLLSGNATEPDWVDHDVRAYIAAMEMKVGKYLKALESERKSQNITKTGT" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"G6680-MONOMER" "Rac prophage; DNA-binding transcriptional regulator RacR" ["RacR", "YdaR", "RarC", "DicA"] "MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWRFFSDVVGPEHWGLNEYPIPTPTNSDTKSELLDINNLYQAASDEIRAIVAFLLSGNATEPDWVDHDVRAYIAAMEMKVGKYLKALESERKSQNITKTGT" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6681-MONOMER" "Rac prophage; putative DNA-binding transcriptional regulator YdaS" ["YdaS", "Rac prophage; putative toxin YdaS", "DicC"] "MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRSACCSQNMSVKQLNDSNKSSFDHT" [] [] 0 [] {} 0 -"G6682-MONOMER" "Rac prophage; putative transcriptional regulator YdaT" ["YdaT"] "MKIKHEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQAVYRKAHFSGGGSSDDSVIVH" [] [] 0 [] {} 0 +"G6682-MONOMER" "Rac prophage; DNA binding transcriptional activator YdaT" ["YdaT"] "MKIKHEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQAVYRKAHFSGGGSSDDSVIVH" [] [] 0 [] {} 0 "G6683-MONOMER" "Rac prophage; DUF1376 domain-containing protein YdaU" ["YdaU"] "MLFVLILSHRAASYGAIMAALPYMQLYIADYLADTMHLSAEEHGAYLLLMFNYWQTGKPIPKNRLAKIARLTNERWADVEPSLQEFFCDNGEEWVHLRIEEDLASVREKLTKKSAAGKASVQARRSRKEADVQTKQERNLTGVQTDVEVVFEHDVNTKATNKDTDKDLKTDPPLNPPRGNRGVKKFDPLDITLPNWISVSLWREWVEFRQALRKPIRTEQGANGAIRELEKFRQQGFSPEQVIRHSIANEYQGLFAPKGVRPETLLRQVNTVSLPDSAIPPGFRG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6684-MONOMER" "Rac prophage; putative ATP-binding protein YdaV" ["YdaV"] "MKNIATGDVLERIRRLAPSHVTAPFKTVAEWREWQLSEGQKRCEEINRQNRQLRVEKILNRSGIQPLHRKCSFSNYQVQNEGQRYALSQAKSIADELMTGCTNFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSGEKFLRELCEVDLLVLDEIGIQRETKNEQVVLHQIVDRRTASMRSVGMLTNLNYEAMKTLLGERIMDRMTMNGGRWVNFNWESWRPNVVQPGIAK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6685-MONOMER" "Rac prophage; putative uncharacterized protein YdaW" ["YdaW"] "METVFDALKAMGKATSIELAARLDISREEVLNELWELKKAGFVDKSAYTWRVADNNVQQEQPAQAELPEEITTATVAKISECDLTATIEQRGPQTADELATLFGTTSRKVASTLAMAISKGRLIRVNQGGKFRYCIPGDNLPAEPKAASVSPLWLSASSSACHGVLIITVITPSPTKNSATKMPEN" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -2267,12 +2267,12 @@ "G6697-MONOMER" "Rac prophage; putative site-specific recombinase" ["YnaD", "PinR"] "MSRIFAYCRISTLDQTTENQRREIESAGFKIKPQQIIEEHISGSAATSERPGFNRLLARLKCGDQLIVTKLDRLGCNAMDIRKTVEQLTETGIRVHCLALGGIDLTSPTGKMMMQVISAVAEFERDLLLERTHSGIVRARGAGKRFGRPPVLNEEQKQVVFERIKSGVSISAIAREFKTSRQTILRAKAKLQTPDI" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6698-MONOMER" "Rac prophage; uncharacterized protein YnaE" ["YnaE", "Rac prophage; cold shock protein YnaE"] "MKSKDTLKWFPAQLPEVRIILGDAVVEVAKQGRPINTRTLLDYIEGNIKKTSWLDNKELLQTAISVLKDNQNLNGKM" [] [] 0 [] {} 0 "G6699-MONOMER" "universal stress protein F" ["YzzL", "UspF", "YnaF", "nucleotide binding filament protein"] "MNRTILVPIDISDSELTQRVISHVEEEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKLPTDRVHVHVEEGSPKDRILELAKKIPAHMIIIASHRPDITTYLLGSNAAAVVRHAECSVLVVR" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6700-MONOMER" "outer membrane porin N" ["YnaG", "OmpN"] "MKSKVLALLIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYFSDNSAKDGDQSYARLGFKGETQINDQLTGYGQWEYNIQANNTESSKNQSWTRLAFAGLKFADYGSFDYGRNYGVMYDIEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFFGLVNGLNFAVQYQGNNEGASNGQEGTNNGRDVRHENGDGWGLSTTYDLGMGFSAGAAYTSSDRTNDQVNHTAAGGDKADAWTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGRDLHAAGGADNPAGVDDKDLVKYADIGATYYFNKNMSTYVDYKINLLDEDDSFYAANGISTDDIVALGLVYQF" ["CCO-MEMBRANE"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"G6700-MONOMER" "outer membrane porin N" ["YnaG", "OmpN"] "MKSKVLALLIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYFSDNSAKDGDQSYARLGFKGETQINDQLTGYGQWEYNIQANNTESSKNQSWTRLAFAGLKFADYGSFDYGRNYGVMYDIEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFFGLVNGLNFAVQYQGNNEGASNGQEGTNNGRDVRHENGDGWGLSTTYDLGMGFSAGAAYTSSDRTNDQVNHTAAGGDKADAWTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGRDLHAAGGADNPAGVDDKDLVKYADIGATYYFNKNMSTYVDYKINLLDEDDSFYAANGISTDDIVALGLVYQF" ["CCO-MEMBRANE"] ["CCO-OUTER-MEM"] 0 [] {} 0 "G6701-MONOMER" "putative pyruvate-flavodoxin oxidoreductase" ["Pfo", "YdbK"] "MITIDGNGAVASVAFRTSEVIAIYPITPSSTMAEQADAWAGNGLKNVWGDTPRVVEMQSEAGAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGELTPFVLHVAARTVATHALSIFGDHSDVMAVRQTGCAMLCAANVQEAQDFALISQIATLKSRVPFIHFFDGFRTSHEINKIVPLADDTILDLMPQVEIDAHRARALNPEHPVIRGTSANPDTYFQSREATNPWYNAVYDHVEQAMNDFSAATGRQYQPFEYYGHPQAERVIILMGSAIGTCEEVVDELLTRGEKVGVLKVRLYRPFSAKHLLQALPGSVRSVAVLDRTKEPGAQAEPLYLDVMTALAEAFNNGERETLPRVIGGRYGLSSKEFGPDCVLAVFAELNAAKPKARFTVGIYDDVTNLSLPLPENTLPNSAKLEALFYGLGSDGSVSATKNNIKIIGNSTPWYAQGYFVYDSKKAGGLTVSHLRVSEQPIRSAYLISQADFVGCHQLQFIDKYQMAERLKPGGIFLLNTPYSADEVWSRLPQEVQAVLNQKKARFYVINAAKIARECGLAARINTVMQMAFFHLTQILPGDSALAELQGAIAKSYSSKGQDLVERNWQALALARESVEEVPLQPVNPHSANRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAACPHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPEIKAINMMSRLEHVEEEKINYDFFLNLPEIDRSKLERIDIRTSQLITPLFEYSGACSGCGETPYIKLLTQLYGDRMLIANATGCSSIYGGNLPSTPYTTDANGRGPAWANSLFEDNAEFGLGFRLTVDQHRVRVLRLLDQFADKIPAELLTALKSDATPEVRREQVAALRQQLNDVAEAHELLRDADALVEKSIWLIGGDGWAYDIGFGGLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRKARKDLGVSMMMYGHVYVAQISLGAQLNQTVKAIQEAEAYPGPSLIIAYSPCEEHGYDLALSHDQMRQLTATGFWPLYRFDPRRADEGKLPLALDSRPPSEAPEETLLHEQRFRRLNSQQPEVAEQLWKDAAADLQKRYDFLAQMAGKAEKSNTD" [] ["CCO-PM-BAC-NEG"] 0 [] {"CPD-7": 3} 0 "G6702-MONOMER" "lipoprotein implicated in Novobiocin resistance" ["YdbI", "HslJ"] "MKKVAAFVALSLLMAGCVSNDKIAVTPEQLQHHRFVLESVNGKPVTSDKNPPEISFGEKMMISGSMCNRFSGEGKLSNGELTAKGLAMTRMMCANPQLNELDNTISEMLKEGAQVDLTANQLTLATAKQTLTYKLADLMN" [] ["CCO-MEMBRANE"] 0 [] {} 0 -"G6703-MONOMER" "putative phospholipid transport factor YdbH" ["YdbH"] "MLGKYKAVLALLLLIILVPLTLLMTLGLWVPTLAGIWLPLGTRIALDESPRITRKGLIIPDLRYLVGDCQLAHITNASLSHPSRWLLNVGTVELDSACLAKLPQTEQSPAAPKTLAQWQAMLPNTWINIDKLIFSPWQEWQGKLSLALTSDIQQLRYQGEKVKFQGQLKGQQLTVSELDVVAFENQPPVKLVGEFAMPLVPDGLPVSGHATATLNLPQEPSLVDAELDWQENSGQLIVLARDNGDPLLDLPWQITRQQLTVSDGRWSWPYAGFPLSGRLGVKVDNWQAGLENALVSGRLSVLTQGQAGKGNAVLNFGPGKLSMDNSQLPLQLTGEAKQADLILYARLPAQLSGSLSDPTLTFEPGALLRSKGRVIDSLDIDEIRWPLAGVKVTQRGVDGRLQAILQAHENELGDFVLHMDGLANDFLPDAGRWQWRYWGKGSFTPMNATWDVAGKGEWHDSTITLTDLSTGFDQLQYGTMTVEKPRLILDKPIVWVRDAQHPSFSGALSLDAGQTLFTGGSVLPPSTLKFSVDGRDPTYFLFKGDLHAGEIGPVRVNGRWDGIRLRGNAWWPKQSLTVFQPLVPPDWKMNLRDGELYAQVAFSAAPEQGFRAGGHGVLKGGSAWMPDNQVNGVDFVLPFRFADGAWHLGTRGPVTLRIAEVINLVTAKNITADLQGRYPWTEEEPLLLTDVSVDVLGGNVLMKQLRMPQHDPALLRLNNLSSSELVSAVNPKQFAMSGAFSGALPLWLNNEKWIVKDGWLANSGPMTLRLDKDTADAVVKDNMTAGSAINWLRYMEISRSSTKINLDNLGLLTMQANITGTSRVDGKSGTVNLNYHHEENIFTLWRSLRFGDNLQAWLEQNARLPGNDCPQGKECEEKQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6704-MONOMER" "lipoprotein YnbE" ["YnbE"] "MKILLAALTSSFMLVGCTPRIEVAAPKEPITINMNVKIEHEIIIKADKDVEELLETRSDLF" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6705-MONOMER" "DUF1318 domain-containing protein YdbL" ["YdbL"] "MKKTLLLCAFLVGLVSSNVMALTLDEARTQGRVGETFYGYLVALKTDAETEKLVADINAERKASYQQLAKQNNVSVDDIAKLAGQKLVARAKPGEYVQGINGKWVRKF" [] [] 0 [] {} 0 +"G6703-MONOMER" "putative intermembrane phospholipid transport protein YdbH" ["YdbH"] "MLGKYKAVLALLLLIILVPLTLLMTLGLWVPTLAGIWLPLGTRIALDESPRITRKGLIIPDLRYLVGDCQLAHITNASLSHPSRWLLNVGTVELDSACLAKLPQTEQSPAAPKTLAQWQAMLPNTWINIDKLIFSPWQEWQGKLSLALTSDIQQLRYQGEKVKFQGQLKGQQLTVSELDVVAFENQPPVKLVGEFAMPLVPDGLPVSGHATATLNLPQEPSLVDAELDWQENSGQLIVLARDNGDPLLDLPWQITRQQLTVSDGRWSWPYAGFPLSGRLGVKVDNWQAGLENALVSGRLSVLTQGQAGKGNAVLNFGPGKLSMDNSQLPLQLTGEAKQADLILYARLPAQLSGSLSDPTLTFEPGALLRSKGRVIDSLDIDEIRWPLAGVKVTQRGVDGRLQAILQAHENELGDFVLHMDGLANDFLPDAGRWQWRYWGKGSFTPMNATWDVAGKGEWHDSTITLTDLSTGFDQLQYGTMTVEKPRLILDKPIVWVRDAQHPSFSGALSLDAGQTLFTGGSVLPPSTLKFSVDGRDPTYFLFKGDLHAGEIGPVRVNGRWDGIRLRGNAWWPKQSLTVFQPLVPPDWKMNLRDGELYAQVAFSAAPEQGFRAGGHGVLKGGSAWMPDNQVNGVDFVLPFRFADGAWHLGTRGPVTLRIAEVINLVTAKNITADLQGRYPWTEEEPLLLTDVSVDVLGGNVLMKQLRMPQHDPALLRLNNLSSSELVSAVNPKQFAMSGAFSGALPLWLNNEKWIVKDGWLANSGPMTLRLDKDTADAVVKDNMTAGSAINWLRYMEISRSSTKINLDNLGLLTMQANITGTSRVDGKSGTVNLNYHHEENIFTLWRSLRFGDNLQAWLEQNARLPGNDCPQGKECEEKQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6704-MONOMER" "putative intermembrane phospholipid transport lipoprotein YnbE" ["YnbE"] "MKILLAALTSSFMLVGCTPRIEVAAPKEPITINMNVKIEHEIIIKADKDVEELLETRSDLF" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"G6705-MONOMER" "DUF1318 domain-containing protein YdbL" ["YdbL"] "MKKTLLLCAFLVGLVSSNVMALTLDEARTQGRVGETFYGYLVALKTDAETEKLVADINAERKASYQQLAKQNNVSVDDIAKLAGQKLVARAKPGEYVQGINGKWVRKF" [] ["CCO-PERI-BAC"] 0 [] {} 0 "G6706-MONOMER" "DNA-binding transcriptional activator FeaR" ["MaoX", "YdbM", "MaoB", "FeaR"] "MNPAVDNEFQQWLSQINQVCGNFTGRLLTERYTGVLDTHFAKGLKLSTVTTSGVNLSRTWQEVKGSDDAWFYTVFQLSGQAIMEQDERQVQIGAGDITLLDASRPCSLYWQESSKQISLLLPRTLLEQYFPHQKPICAERLDADLPMVQLSHRLLQESMNNPALSETESEAALQAMVCLLRPVLHQRESVQPRRERQFQKVVTLIDDNIREEILRPEWIAGETGMSVRSLYRMFADKGLVVAQYIRNRRLDFCADAIRHAADDEKLAGIGFHWGFSDQSHFSTVFKQRFGMTPGEYRRKFR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6708-MONOMER" "fused 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase and oxepin-CoA hydrolase" ["YdbN", "PaaZ", "MaoC", "oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase"] "MQQLASFLSGTWQSGRGRSRLIHHAISGEALWEVTSEGLDMAAARQFAIEKGAPALRAMTFIERAAMLKAVAKHLLSEKERFYALSAQTGATRADSWVDIEGGIGTLFTYASLGSRELPDDTLWPEDELIPLSKEGGFAARHLLTSKSGVAVHINAFNFPCWGMLEKLAPTWLGGMPAIIKPATATAQLTQAMVKSIVDSGLVPEGAISLICGSAGDLLDHLDSQDVVTFTGSAATGQMLRVQPNIVAKSIPFTMEADSLNCCVLGEDVTPDQPEFALFIREVVREMTTKAGQKCTAIRRIIVPQALVNAVSDALVARLQKVVVGDPAQEGVKMGALVNAEQRADVQEKVNILLAAGCEIRLGGQADLSAAGAFFPPTLLYCPQPDETPAVHATEAFGPVATLMPAQNQRHALQLACAGGGSLAGTLVTADPQIARQFIADAARTHGRIQILNEESAKESTGHGSPLPQLVHGGPGRAGGGEELGGLRAVKHYMQRTAVQGSPTMLAAISKQWVRGAKVEEDRIHPFRKYFEELQPGDSLLTPRRTMTEADIVNFACLSGDHFYAHMDKIAAAESIFGERVVHGYFVLSAAAGLFVDAGVGPVIANYGLESLRFIEPVKPGDTIQVRLTCKRKTLKKQRSAEEKPTGVVEWAVEVFNQHQTPVALYSILTLVARQHGDFVD" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6709-MONOMER" "phenylacetyl-CoA 1,2-epoxidase, monooxygenase subunit" ["YdbO", "PaaA"] "MTQEERFEQRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSIFNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAQKQMLQDAINRFWWPALMMFGPNDDNSPNSARSLTWKIKRFTNDELRQRFVDNTVPQVEMLGMTVPDPDLHFDTESGHYRFGEIDWQEFNEVINGRGICNQERLDAKRKAWEEGTWVREAALAHAQKQHARKVA" [] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -2288,19 +2288,19 @@ "G6719-MONOMER" "phenylacetate-CoA ligase" ["PaaK"] "MITNTKLDPIETASVDELQALQTQRLKWTLKHAYENVPMYRRKFDAAGVHPDDFRELSDLRKFPCTTKQDLRDNYPFDTFAVPMEQVVRIHASSGTTGKPTVVGYTQNDIDNWANIVARSLRAAGGSPKDKIHVAYGYGLFTGGLGAHYGAERLGATVIPMSGGQTEKQAQLIRDFQPDMIMVTPSYCLNLIEELERQLGGDASGCSLRVGVFGAEPWTQAMRKEIERRLGITALDIYGLSEVMGPGVAMECLETTDGPTIWEDHFYPEIVNPHDGTPLADGEHGELLFTTLTKEALPVIRYRTRDLTRLLPGTARTMRRMDRISGRSDDMLIIRGVNVFPSQLEEEIVKFEHLSPHYQLEVNRRGHLDSLSVKVELKESSLTLTHEQRCQVCHQLRHRIKSMVGISTDVMIVNCGSIPRSEGKACRVFDLRNIVGA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6720-MONOMER" "DNA-binding transcriptional repressor PaaX" ["YdbY", "PaaX"] "MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLNIEQEALCQFIR" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6721-MONOMER" "2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase" ["YdbZ", "PaaY"] "MPIYQIDGLTPVVPEESFVHPTAVLIGDVILGKGVYVGPNASLRGDFGRIVVKDGANIQDNCVMHGFPEQDTVVGEDGHIGHSAILHGCIIRRNALVGMNAVVMDGAVIGENSIVGASAFVKAKAEMPANYLIVGSPAKAIRELSEQELAWKKQGTHEYQVLVTRCKQTLHQVEPLREIEPGRKRLVFDENLRPKQ" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G6722-MONOMER" "putative outer membrane protein, N-terminal fragment" ["YdbA_1", "YdbA"] "MQRKTLLSACIALALSGQGWAADITEVETTTGEKKNTNVTCPADPGKLSPEELKRLPSECSPLVEQNLMPWLSTGAAALITALAVVELNDDDDHHHRNNSPLPPTPPDDESDDTPVPPTPGGDEIIPDDPDDTPTPPKPVSFNNDVILDKTEKTLTIRDSVFTYTENADGTISLQDSNGRKATINLWQIDEANNTVALEGVSADGATKWQYNHNGELVITGDNATVNNNGKTTVDGKDSTGTEINGNNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVTDPESMGIQIDGDKAIVNNEGESTITNGGTGTQINGDDATANNNGKTTVDGKDSTGTEINGNNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVTDPESIGIQVDGDQAVVNNEGESAITNGGTGTQINGDDATANNNGKTTVDGKDSTGTEIAGNNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVTDPESIGIQIDGDQAIVNNEGESTITNGGTGTQINGNDATANNSGKTTVDGKDSTGTKIAGNIGIVNLDGSLTVTGGAHGVENIGDNGTVNNKGDIVVSDTGSIGVLINGEGATVSNTGDVNVSNEATGFSITTNSGKVSLAGSMQVGDFSTGVDLNGNNNSVTLAAKDLKVVGQKATGINVSGDANTVNITGNVLVDKDKTADNAAEYFFDPSVGINVYGSDNNVTLDGKLTVVSDSEVTSRQSNLFDGSAEKTSGLVVIGDGNTVNMNGGLELIGEKNALADGSQVTSLRTGYSYTSVIVVSGESSVYLNGDTTISGEFPLGFAGVIRVQDKALLEIGSGATLTMQDIDSFEHHGTRTPELTYADSGAKIVNKGTVEIQNLGFAFVTGENTTGINSGTISLLQNGKDPAPSPIVLLATNGGSATNAGTITGKVTEQHSVFNKYSTGTSNSFIFNNDVSSITGLVAQSNSTIINTDSGIIDLYGRGSVGMLAIADSTAENQGKITLDSMWVDANDTTAMRDIASNSAIDFGTGVGVGTDSYSGAGKNATAINQLGGVITIYNAGAGMAAYGASNTVINQGTINLEKNGNYDDSLAANTLVGMAVYEHGTAINDQTGVININVGTGQAFYNDGTGTIVNYGTICTFGVCQSGNEYNNTDDFTSLIYTGGDTITRSGETVTLNKSAAVTDKLAGNVVNSGTLSGDQITVSSGLLENTSGGIINNLVKLDKGAVIKNAGVMTNNVDVSGGILNNAGEMTAQITMNAGADSSLVNNTGTINKIVQNAGVFNNSGSVTGRMMSAGGVFNNQTDGAIMRGAALTGTAVANNEGTWNLGSSSEGNNTGMLEVNNNSAFNNRGEFILDNDKNAVHINQSGTLYNTGHMNISNSSHNGAVNMWGGNGRFINDGTIDVSAKSLVVSANNAGDQNAFFWNQDNGVINFDHDSASAVKVTHSNFIAQNDGIMNISGTGAVAMEGDKNAQLVNNGTINLGTAGTTDTGMIGMQLDANATADAVIENNGTINIFANDSFAFSVLGTVGHVVNNGTVVIADGVTGSGLIKQGDSINVEGMNGNNGNSSEVHYGDYTLPDVPKPNTVSVTSGSDEAGGSMNNLNGYVVGTNVNGSAGKLKVNNASMNGVEINTGFTAGTADTTVSFDNVVEGSNLTDADAITSTSVVWTAKGSTDASGNVDVTMSKNAYTDVATDASVNDIAKALDAGYTNNELFTSLNVGTTAELNSALKQVSGSQATTVFREARVLSNRFSMLADAAPKVGNGLAFNVVAKGDPRAELGNNTEYDMLALRKTIDLSESQTMSLEYGIARLDGDGAQKAGDNGVTGGYSQFFGLKHQMSFDNGMNWNNALRYDVHNLDSSRSIAFGNTNKTADTDVKQQYLEFRSEGAKTFEPSEGLKVTPYAGVKLRHTLEGGYQERNAGDFNLNMNSGSETAVDSIVGLKLDYAGKDGWSASATLEGGPNLSYAKSQRTASLAGAGSQHFNVDDGQKGGGINSLTSVGVKYSSKESSLNLDAYNWKEDGISDKGVMLNFKKTF" [] ["CCO-EXTRACELLULAR", "CCO-MEMBRANE"] 0 [] {} 0 +"G6722-MONOMER" "putative outer membrane protein, N-terminal fragment" ["YdbA_1", "YdbA"] "MQRKTLLSACIALALSGQGWAADITEVETTTGEKKNTNVTCPADPGKLSPEELKRLPSECSPLVEQNLMPWLSTGAAALITALAVVELNDDDDHHHRNNSPLPPTPPDDESDDTPVPPTPGGDEIIPDDPDDTPTPPKPVSFNNDVILDKTEKTLTIRDSVFTYTENADGTISLQDSNGRKATINLWQIDEANNTVALEGVSADGATKWQYNHNGELVITGDNATVNNNGKTTVDGKDSTGTEINGNNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVTDPESMGIQIDGDKAIVNNEGESTITNGGTGTQINGDDATANNNGKTTVDGKDSTGTEINGNNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVTDPESIGIQVDGDQAVVNNEGESAITNGGTGTQINGDDATANNNGKTTVDGKDSTGTEIAGNNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVTDPESIGIQIDGDQAIVNNEGESTITNGGTGTQINGNDATANNSGKTTVDGKDSTGTKIAGNIGIVNLDGSLTVTGGAHGVENIGDNGTVNNKGDIVVSDTGSIGVLINGEGATVSNTGDVNVSNEATGFSITTNSGKVSLAGSMQVGDFSTGVDLNGNNNSVTLAAKDLKVVGQKATGINVSGDANTVNITGNVLVDKDKTADNAAEYFFDPSVGINVYGSDNNVTLDGKLTVVSDSEVTSRQSNLFDGSAEKTSGLVVIGDGNTVNMNGGLELIGEKNALADGSQVTSLRTGYSYTSVIVVSGESSVYLNGDTTISGEFPLGFAGVIRVQDKALLEIGSGATLTMQDIDSFEHHGTRTPELTYADSGAKIVNKGTVEIQNLGFAFVTGENTTGINSGTISLLQNGKDPAPSPIVLLATNGGSATNAGTITGKVTEQHSVFNKYSTGTSNSFIFNNDVSSITGLVAQSNSTIINTDSGIIDLYGRGSVGMLAIADSTAENQGKITLDSMWVDANDTTAMRDIASNSAIDFGTGVGVGTDSYSGAGKNATAINQLGGVITIYNAGAGMAAYGASNTVINQGTINLEKNGNYDDSLAANTLVGMAVYEHGTAINDQTGVININVGTGQAFYNDGTGTIVNYGTICTFGVCQSGNEYNNTDDFTSLIYTGGDTITRSGETVTLNKSAAVTDKLAGNVVNSGTLSGDQITVSSGLLENTSGGIINNLVKLDKGAVIKNAGVMTNNVDVSGGILNNAGEMTAQITMNAGADSSLVNNTGTINKIVQNAGVFNNSGSVTGRMMSAGGVFNNQTDGAIMRGAALTGTAVANNEGTWNLGSSSEGNNTGMLEVNNNSAFNNRGEFILDNDKNAVHINQSGTLYNTGHMNISNSSHNGAVNMWGGNGRFINDGTIDVSAKSLVVSANNAGDQNAFFWNQDNGVINFDHDSASAVKVTHSNFIAQNDGIMNISGTGAVAMEGDKNAQLVNNGTINLGTAGTTDTGMIGMQLDANATADAVIENNGTINIFANDSFAFSVLGTVGHVVNNGTVVIADGVTGSGLIKQGDSINVEGMNGNNGNSSEVHYGDYTLPDVPKPNTVSVTSGSDEAGGSMNNLNGYVVGTNVNGSAGKLKVNNASMNGVEINTGFTAGTADTTVSFDNVVEGSNLTDADAITSTSVVWTAKGSTDASGNVDVTMSKNAYTDVATDASVNDIAKALDAGYTNNELFTSLNVGTTAELNSALKQVSGSQATTVFREARVLSNRFSMLADAAPKVGNGLAFNVVAKGDPRAELGNNTEYDMLALRKTIDLSESQTMSLEYGIARLDGDGAQKAGDNGVTGGYSQFFGLKHQMSFDNGMNWNNALRYDVHNLDSSRSIAFGNTNKTADTDVKQQYLEFRSEGAKTFEPSEGLKVTPYAGVKLRHTLEGGYQERNAGDFNLNMNSGSETAVDSIVGLKLDYAGKDGWSASATLEGGPNLSYAKSQRTASLAGAGSQHFNVDDGQKGGGINSLTSVGVKYSSKESSLNLDAYNWKEDGISDKGVMLNFKKTF" [] ["CCO-MEMBRANE"] 0 [] {} 0 "G6725-MONOMER" "IS30 transposase" ["Tra8-2", "InsI2"] "MRRTFTAEEKASVFELWKNGTGFSEIANILGSKPGTIFTMLRDTGGIKPHERKRAVAHLTLSEREEIRAGLSAKMSIRAIATALNRSPSTISREVQRNRGRRYYKAVDANNRANRMAKRPKPCLLDQNLPLRKLVLEKLEMKWSPEQISGWLRRTKPRQKTLRISPETIYKTLYFRSREALHHLNIQHLRRSHSLRHGRRHTRKGERGTINIVNGTPIHERSRNIDNRRSLGHWEGDLVSGTKNSHIATLVDRKSRYTIILRLRGKDSVSVNQALTDKFLSLPSELRKSLTWDRGMELARHLEFTVSTGVKVYFCDPQSPWQRGTNENTNGLIRQYFPKKTCLAQYTQHELDLVAAQLNNRPRKTLKFKTPKEIIERGVALTD" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6727-MONOMER" "CDP-alcohol phosphatidyltransferase domain-containing protein YnbA" ["YnbA"] "MTLYQIKPLFQSLLRPTMFWLYKHHVTANHITLAALALSLLTGLLLMLAAQPILFLLLPIVLFIRMALNALDGMLARECNQQTRLGAILNETGDVISDIALYLPFLFLPESNASLVILMLFCTILTEFCGLLAQTINGVRSYAGPFGKSDRALIFGLWGLAVAIYPQWMQWNNLLWSIASILLLWTAINRCRSVLLMSAEI" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6728-MONOMER" "putative CDP-diglyceride synthase" ["YnbB"] "MLEKSLATLFALLILATLINRFLLWRLPERKGGEVTLRIRTWWGIVICFSMVISGPRWMTLTFFALISFLALKEYCTLISVHFPRWLYWGIPLNYLLIGFNCFELFLLFIPLAGFLILATGQVLVGDPSGFLHTVSAIFWGWIMTVFALSHAAWLLMLPTTNIQGGALLVLFLLALTESNDIAQYLWGKSCGRRKVVPKVSPGKTLEGLMGGVITIMIASLIIGPLLTPLNTLQALLAGLLIGISGFCGDVVMSAIKRDIGVKDSGKLLPGHGGLLDRIDSLIFTAPVFFYFIRYCCY" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6729-MONOMER" "hydrolase/methyltransferase domain-containing protein YnbC" ["YnbC"] "MENSRIPGEHFFTTSDNTALFYRHWPALQPGAKKVIVLFHRGHEHSGRLQHLVDELAMPDTAFYAWDARGHGKSSGPRGYSPSLARSVRDVDEFVRFAASDSQVGLEEVVVIAQSVGAVLVATWIHDYAPAIRGLVLASPAFKVKLYVPLARPALALWHRLRGLFFINSYVKGRYLTHDRQRGASFNNDPLITRAIAVNILLDLYKTSERIIRDAAAITLPTQLLISGDDYVVHRQPQIDFYQRLRSPLKELHLLPGFYHDTLGEENRALAFEKMQSFISRLYANKSQKFDYQHEDCTGPSADRWRLLSGGPVPLSPVDLAYRFMRKAMKLFGTHSSGLHLGMSTGFDSGSSLDYVYQNQPQGSNAFGRLVDKIYLNSVGWRGIRQRKTHLQILIKQAVADLHAKGLAVRVVDIAAGHGRYVLDALANEPAVSDILLRDYSELNVAQGQEMIAQRGMSGRVRFEQGDAFNPEELSALTPRPTLAIVSGLYELFPENEQVKNSLAGLANAIEPGGILIYTGQPWHPQLEMIAGVLTSHKDGKPWVMRVRSQGEMDSLVRDAGFDKCTQRIDEWGIFTVSMAVRRDN" [] ["CCO-CYTOSOL", "CCO-MEMBRANE"] 0 [] {} 0 -"G6730-MONOMER" "phosphatase domain-containing protein YnbD" ["YnbD"] "MLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDIPSQVFGWETAIPFLPWTIVPYWSLDLLYGFSLFVCSTTFEQRRLVHRLILATVMACCGFLLYPLKFSFIRPEVSGVTGWLFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAERWRKVCGGWFLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIKIALPYVVGAGSCIVLMELMMMIQLWWSVWLCWPVLSLLIIGRGYGGLGAITTGKDSQGKLPPAVYWLTLPCRIGMWLSMRWFCRRLEPVSKMTAGVYLGAFPRHIPAQNAVLDVTFEFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGSVLVHCALGLSRSALVVAAWLLCYGHCKTVNEAISYIRARRPQIVLTDEHKAMLRLWENR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6730-MONOMER" "phosphatase domain-containing protein YnbD" ["YnbD"] "MLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDIPSQVFGWETAIPFLPWTIVPYWSLDLLYGFSLFVCSTTFEQRRLVHRLILATVMACCGFLLYPLKFSFIRPEVSGVTGWLFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAERWRKVCGGWFLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIKIALPYVVGAGSCIVLMELMMMIQLWWSVWLCWPVLSLLIIGRGYGGLGAITTGKDSQGKLPPAVYWLTLPCRIGMWLSMRWFCRRLEPVSKMTAGVYLGAFPRHIPAQNAVLDVTFEFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGSVLVHCALGLSRSALVVAAWLLCYGHCKTVNEAISYIRARRPQIVLTDEHKAMLRLWENR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6731-MONOMER" "FMN dependent NADH:quinone oxidoreductase" ["AzoR", "AcpD", "FMN dependent azoreductase"] "MSKVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLAANPIPVLDGELVGALRPSDAPLTPRQQEALALSDELIAELKAHDVIVIAAPMYNFNISTQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVTPYLSTFLGFIGITDVKFVFAEGIAYGPEMAAKAQSDAKAAIDSIVSA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "G6732-MONOMER" "ATP-dependent 3'→5' RNA helicase HrpA" ["HrpA"] "MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGKVLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESHGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVKPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHLKITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDKLIDANGGPVWTEEGFAALHEKVRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6736-MONOMER" "putative regulatory protein MokB" ["MokB", "regulatory peptide whose translation enables hokB expression"] "MNLAIQILASYPPSGKEKGYEAQPSGGVSAHYLHYDSDIHTPDPTNALRTAVPGR" [] [] 0 [] {} 0 "G6737-MONOMER" "DNA-binding transcriptional dual regulator YdcI" ["YdcI"] "MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGARLFERGRQGAQLTLPGEQFLTHAVRVLDAINTAGRSLHRKEGLNNDVVRVGALPTAALGILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSDPELMTGLNYELLFLESLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINAIRKSMPF" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6738-MONOMER" "DUF1338 domain-containing protein YdcJ" ["YdcJ"] "MANSITADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVLENNPQLHEKMVNADELARLNVERHGAIRVGTAQELATLRRMFAIMGMYPVSYYDLSQAGVPVHSTAFRPIDDASLARNPFRVFTSLLRLELIENEILRQKAAEILRQRDIFTPRCRQLLEEYEQQGGFNETQAQEFVQEALETFRWHQSATVDEETYRALHNEHRLIADVVCFPGCHINHLTPRTLDIDRVQSMMPECGIEPKILIEGPPRREVPILLRQTSFKALEETVLFAGQKQGTHTARFGEIEQRGVALTPKGRQLYDDLLRNAGTGQDNLTHQMHLQETFRTFPDSEFLMRQQGLAWFRYRLTPSGEAHRQAIHPGDDPQPLIERGWVVAQPITYEDFLPVSAAGIFQSNLGNETQTRSHGNASREAFEQALGCPVLDEFQLYQEAEERSKRRCGLL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6741-MONOMER" "putative acyltransferase YdcK" ["YdcK"] "MRKYRLSEEQRAFSYQEDGTKKNVLLRQIIAISDFNDVIAGTAGGWIDRETVLAQEGNCWIYDQNAIAFGGAVISGNTRITGTSVLWGEVYATDNVWIDNSEISQGAYISDSVTIHDSLVYGQCRIFGHALIDQHSMIVAAQGLTPDHQLLLQIYDRARVSASRIVHQAQIYGDAVVRYAFIEHRAEVFDFASIEGNEENNVWLCDCAKVYGHAQVKAGIEEDAIPTIHYSSQVAEYAIVEGNCVLKHHVLVGGNAVVRGGPILLDEHVVIQGESRITGAVIIENHVELTDHAVVEAFDGDTVHVRGPKVINGEERITRTPLAGLL" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6742-MONOMER" "DUF3313 domain-containing lipoprotein YdcL" ["YdcL"] "MRTTSFAKVAALCGLLALSGCASKITQPDKYSGFLNNYSDLKETTSATGKPVLRWVDPSFDQSKYDSIVWNPITYYPVPKPSTQVGQKVLDKILNYTNTEMKEAIAQRKPLVTTAGPRSLIFRGAITGVDTSKEGLQFYEVVPVALVVAGTQMATGHRTMDTRLYFEGELIDAATNKPVIKVVRQGEGKDLNNESTPMAFENIKQVIDDMATDATMFDVNKK" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 0 +"G6742-MONOMER" "DUF3313 domain-containing lipoprotein YdcL" ["YdcL"] "MRTTSFAKVAALCGLLALSGCASKITQPDKYSGFLNNYSDLKETTSATGKPVLRWVDPSFDQSKYDSIVWNPITYYPVPKPSTQVGQKVLDKILNYTNTEMKEAIAQRKPLVTTAGPRSLIFRGAITGVDTSKEGLQFYEVVPVALVVAGTQMATGHRTMDTRLYFEGELIDAATNKPVIKVVRQGEGKDLNNESTPMAFENIKQVIDDMATDATMFDVNKK" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 "G6743-MONOMER" "putative RNA-guided DNA endonuclease InsQ" ["TnpB", "InsQ", "YdcM", "putative accessory protein InsQ for insertion sequence element IS609"] "MKRLQAFKFQLRPGGQQECEMRRFAGACRFVFNRALARQNENHEAGNKYIPYGKMASWLVEWKNATETQWLKDSPSQPLQQSLKDLERAYKNFFRKRAAFPRFKKRGQNDAFRYPQGVKLDQENSRIFLPKLGWMRYRNSRQVTGVVKNVTVSQSCGKWYISIQTESEVSTPVHPSASMVGLDAGVAKLATLSDGTVFEPVNSFQKNQKKLARLQRQLSRKVKFSNNWQKQKRKIQRLHSCIANIRRDYLHKVTTAVSKNHAMIVIEDLKVSNMSKSAAGTVSQPGRNVRAKSGLNRSILDQGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKENRLSQSKFRCQVCGYTANADVNGARNILAAGHAVLACGEMVQSGRPLKQEPTEMIQATA" [] [] 0 [] {"ZN+2": 1} 0 "G6745-MONOMER" "DNA-binding transcriptional dual regulator SutR" ["SutR", "YdcN"] "MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKGVIEHVVVIDGQLDLCVDGEWQTLNCGEGVRFAADVTHIYRNGGEQTVHFHSLIHYPRS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6746-MONOMER" "23S rRNA 5-hydroxycytidine C2501 synthase" ["RlhA", "YdcP"] "MTVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLKDIAELVPFAHRYGAKIFVTLNTILHDDELEPAQRLITDLYQTGVDALIVQDMGILELDIPPIELHASTQCDIRTVEKAKFLSDVGFTQIVLARELNLDQIRAIHQATDATIEFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTANLGALIDAGVRSFKIEGRYKDMSYVKNITAHYRQMLDAIIEERGDLARASSGRTEHFFVPSTEKTFHRGSTDYFVNARKGDIGAFDSPKFIGLPVGEVVKVAKDHLDVAVTEPLANGDGLNVLIKREVVGFRANTVEKTGENQYRVWPNEMPADLHKIRPHHPLNRNLDHNWQQALTKTSSERRVAVDIELGGWQEQLILTLTSEEGVSITHTLDGQFDEANNAEKAMNNLKDGLAKLGQTLYYARDVQINLPGALFVPNSLLNQFRREAADMLDAARLASYQRGSRKPVADPAPVYPQTHLSFLANVYNQKAREFYHRYGVQLIDAAYEAHEEKGEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVNGDEVLTLKFDCRPCEMHVIGKIKNHILKMPLPGSVVASVSPDELLKTLPKRKG" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -2308,13 +2308,13 @@ "G6749-MONOMER" "antitoxin of the HicA-HicB toxin-antitoxin system / DNA-binding transcriptional repressor HicB" ["YdcQ", "HicB"] "MRYPVTLTPAPEGGYMVSFVDIPEALTQGETVAEAMEAAKDALLTAFDFYFEDNELIPLPSPLNSHDHFIEVPLSVASKVLLLNAFLQSEITQQELARRIGKPKQEITRLFNLHHATKIDAVQLAAKALGKELSLVMV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6750-MONOMER" "fused putative DNA-binding transcriptional regulator/putative aminotransferase YdcR" ["YdcR"] "MKKYQQLAEQLREQIASGIWQPGDRLPSLRDQVALSGMSFMTVSHAYQLLESQGYIIARPQSGYYVAPQAIKMPKAPVIPVTRDEAVDINTYIFDMLQASRDPSVVPFASAFPDPRLFPLQQLNRSLAQVSKTATAMSVIENLPPGNAELRQAIARRYALQGITISPDEIVITAGALEALNLSLQAVTEPGDWVIVENPCFYGALQALERLRLKALSVATDVKEGIDLQALELALQEYPVKACWLMTNSQNPLGFTLTPQKKAQLVALLNQYNVTLIEDDVYSELYFGREKPLPAKAWDRHDGVLHCSSFSKCLVPGFRIGWVAAGKHARKIQRLQLMSTLSTSSPMQLALVDYLSTRRYDAHLRRLRRQLAERKQRAWQALLRYLPAEVKIHHNDSGYFLWLELPEPLDAGELSLAALTHHISIAPGKMFSTGENWSRFFRFNTAWQWGEREEQAVKQLGKLIQERL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6755-MONOMER" "γ-aminobutyraldehyde dehydrogenase" ["PatD", "YdcW", "Prr"] "MQHKLLINGELVSGEGEKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDIFPAGVINILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNEEQVVNWANDSQYGLASSVWTKDVGRAHRVSARLQYGCTWVNTHFMLVSEMPHGGQKLSGYGKDMSLYGLEDYTVVRHVMVKH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"G6756-MONOMER" "orphan toxin OrtT" ["OrtT", "YdcX"] "MSLYQHMLVFYAVMAAIAFLITWFLSHDKKRIRFLSAFLVGATWPMSFPVALLFSLF" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6756-MONOMER" "orphan toxin OrtT" ["OrtT", "YdcX"] "MSLYQHMLVFYAVMAAIAFLITWFLSHDKKRIRFLSAFLVGATWPMSFPVALLFSLF" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6757-MONOMER" "DUF2526 domain-containing protein YdcY" ["YdcY"] "MSHLDEVIARVDAAIEESVIAHMNELLIALSDDAELSREDRYTQQQRLRTAIAHHGRKHKEDMEARHEQLTKGGTIL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6758-MONOMER" "putative inner membrane protein YdcZ" ["YdcZ"] "MNQSLTLAFLIAAGIGLVVQNTLMVRITQTSSTILIAMLLNSLVGIVLFVSILWFKQGMAGFGELVSSVRWWTLIPGLLGSFFVFASISGYQNVGAATTIAVLVASQLIGGLMLDIFRSHGVPLRALFGPICGAILLVVGAWLVARRSF" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6758-MONOMER" "putative transport protein YdcZ" ["YdcZ", "inner membrane protein"] "MNQSLTLAFLIAAGIGLVVQNTLMVRITQTSSTILIAMLLNSLVGIVLFVSILWFKQGMAGFGELVSSVRWWTLIPGLLGSFFVFASISGYQNVGAATTIAVLVASQLIGGLMLDIFRSHGVPLRALFGPICGAILLVVGAWLVARRSF" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6759-MONOMER" "L-amino acid N-acyltransferase" ["MnaT", "YncA"] "MSIRFARKADCAAIAEIYNHAVLYTAAIWNDQTVDADNRIAWFEARTLAGYPVLVSEENGVVTGYASFGDWRSFDGFRHTVEHSVYVHPDHQGKGLGRKLLSRLIDEARDCGKHVMVAGIESQNQASLHLHQSLGFVVTAQMPQVGTKFGRWLDLTFMQLQLDERTEPDAIG" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6760-MONOMER" "NADPH-dependent curcumin/dihydrocurcumin reductase" ["YncB", "CurA"] "MGQQKQRNRRWVLASRPHGAPVPENFRLEEDDVATPGEGQVLLRTVYLSLDPYMRGRMSDEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYDISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEKCRHATEVLGFDVCLDHHADDFAEQLAKACPKGIDIYYENVGGKVFDAVLPLLNTSARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKRIRLQGFIIAQDYGHRIHEFQREMGQWVKEDKIHYREEITDGLENAPQTFIGLLKGKNFGKVVIRVAGDD" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6761-MONOMER" "DNA-binding transcriptional dual regulator McbR" ["YncC", "McbR"] "MPGTGKMKHVSLTLQVENDLKHQLSIGALKPGARLITKNLAEQLGMSITPVREALLRLVSVNALSVAPAQAFTVPEVGKRQLDEINRIRYELELMAVALAVENLTPQDLAELQELLEKLQQAQEKGDMEQIINVNRLFRLAIYHRSNMPILCEMIEQLWVRMGPGLHYLYEAINPAELREHIENYHLLLAALKAKDKEGCRHCLAEIMQQNIAILYQQYNR" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6762-MONOMER" "pyrroloquinoline quinone outer membrane transporter" ["YncD", "PqqU"] "MKIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQVVSELDTPAAVSVVDGEEMRLATPRINLSESLTGVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPATMPDGQGQTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQQPPTIEASSYYGSFGSWRYGLKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDEASKLSLIFNSVDIKADDPGGLTKAEWKANPQQAPRAEQYDTRKTIKQTQAGLRYERSLSSRDDMSVMMYAGERETTQYQSIPMAPQLNPSHAGGVITLQRHYQGIDSRWTHRGELGVPVTFTTGLNYENMSENRKGYNNFRLNSGMPEYGQKGELRRDERNLMWNIDPYLQTQWQLSEKLSLDAGVRYSSVWFDSNDHYVTPGNGDDSGDASYHKWLPAGSLKYAMTDAWNIYLAAGRGFETPTINELSYRADGQSGMNLGLKPSTNDTIEIGSKTRIGDGLLSLALFQTDTDDEIVVDSSSGGRTTYKNAGKTRRQGAELAWDQRFAGDFRVNASWTWLDATYRSNVCNEQDCNGNRMPGIARNMGFASIGYVPEDGWYAGTEARYMGDIMADDENTAKAPSYTLVGLFTGYKYNYHNLTVDLFGRVDNLFDKEYVGSVIVNESNGRYYEPSPGRNYGVGMNIAWRFE" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 +"G6762-MONOMER" "pyrroloquinoline quinone outer membrane transporter" ["YncD", "PqqU"] "MKIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQVVSELDTPAAVSVVDGEEMRLATPRINLSESLTGVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPATMPDGQGQTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQQPPTIEASSYYGSFGSWRYGLKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDEASKLSLIFNSVDIKADDPGGLTKAEWKANPQQAPRAEQYDTRKTIKQTQAGLRYERSLSSRDDMSVMMYAGERETTQYQSIPMAPQLNPSHAGGVITLQRHYQGIDSRWTHRGELGVPVTFTTGLNYENMSENRKGYNNFRLNSGMPEYGQKGELRRDERNLMWNIDPYLQTQWQLSEKLSLDAGVRYSSVWFDSNDHYVTPGNGDDSGDASYHKWLPAGSLKYAMTDAWNIYLAAGRGFETPTINELSYRADGQSGMNLGLKPSTNDTIEIGSKTRIGDGLLSLALFQTDTDDEIVVDSSSGGRTTYKNAGKTRRQGAELAWDQRFAGDFRVNASWTWLDATYRSNVCNEQDCNGNRMPGIARNMGFASIGYVPEDGWYAGTEARYMGDIMADDENTAKAPSYTLVGLFTGYKYNYHNLTVDLFGRVDNLFDKEYVGSVIVNESNGRYYEPSPGRNYGVGMNIAWRFE" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 1 "G6763-MONOMER" "PQQ-like domain-containing protein YncE" ["YncE"] "MHLRHLFSSRLRGSLLLGSLLVVSSFSTQAAEEMLRKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQKSTKQQEATQPDDVIRIAL" ["CCO-PERI-BAC"] [] 0 [] {} 0 "G6765-MONOMER" "putative glutathione S-transferase YncG" ["YncG"] "MIKVYGVPGWGSTISELMLTLADIPYQFVDVSGFDHEGASRELLKTLNPLCQVPTLALENDEIMTETAAIALMVLDRRPDLAPPVGRAERQLFQRLLVWLVANVYPTFTFADYPERWAPDAPEQLKKNVIEYRKSLYIWLNSQLTAEPYAFGEQLTLVDCYLCTMRTWGPGHEWFQDNATNISAIADAVCQLPKLQEVLKRNEII" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6766-MONOMER" "DUF5445 domain-containing protein YncH" ["YncH"] "MVCFLIYITLLFIQRVYFISSEKKLTIHIVQMFQLLSQAFYNLKMFLMMDMLGVGDAININTNKNIRQVC" [] ["CCO-MEMBRANE"] 0 [] {} 0 @@ -2323,13 +2323,13 @@ "G6770-MONOMER" "arylamine N-acetyltransferase" ["NhoA", "YddI"] "MTPILNHYFARINWSGAAAVNIDTLRALHLKHNCTIPFENLDVLLPREIQLDNQSPEEKLVIARRGGYCFEQNGVFERVLRELGFNVRSLLGRVVLSNPPALPPRTHRLLLVELEEEKWIADVGFGGQTLTAPIRLVSDLVQTTPHGEYRLLQEGDDWVLQFNHHQHWQSMYRFDLCEQQQSDYVMGNFWSAHWPQSHFRHHLLMCRHLPDGGKLTLTNFHFTHYENGHAVEQRNLPDVASLYAVMQEQFGLGVDDAKHGFTVDELALVMAAFDTHPEAGK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6771-MONOMER" "uncharacterized protein YddJ" ["YddJ"] "MQLMLFNLFSPALKLNTGLAILSPGAFEVHSDGIDVDNELFHYPIKKAYTPYNIHTYKTEEVVNQMNIKVKNMTLDEINNTYCNNDYYNQAIREEPIDLLDRSFSSSSWPF" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6772-MONOMER" "leucine-rich repeat domain-containing protein YddK" ["YddK"] "MITDLILHNHPRMKTITLNDNHIAHLNAKNTTKLEYLNLSNNNLLPTNDIDQLISSKHLWHVLVNGINNDPLAQMQYWTAVRNIIDDTNEVTIDLSGLNLTTQPPGLQNFTSINLDNNQFTHFDATNYDRLVKLSLNSNALESINFPQGRNVSITHISMNNNALRNIDIDRLSSVTYFSAAHNQLEFVQLESCEWLQYLNLSHNQLTDIVAGNKNELLLLDLSHNKLTSLHNDLFPNLNTLLINNNLLSEIKIFYSNFCNVQTLNAANNQLKYINLDFLTYLPSIKSLRLDNNKITHIDTNNTSDIGTLFPIIKQSKT" [] ["CCO-EXTRACELLULAR"] 0 [] {} 0 -"G6773-MONOMER" "putative uncharacterized protein YddL" ["YddL", "putative truncated Porin_1 family protein YddL"] "MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYFTDDKRDDGDKTYARLGFKGETQINDQMIGFGHWEYDFKGYNDEANGSRGKNL" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"G6773-MONOMER" "putative uncharacterized protein YddL" ["YddL", "putative truncated Porin_1 family protein YddL"] "MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYFTDDKRDDGDKTYARLGFKGETQINDQMIGFGHWEYDFKGYNDEANGSRGKNL" [] ["CCO-OUTER-MEM"] 0 [] {} 0 "G6774-MONOMER" "DNA-binding transcriptional regulator YddM" ["YddM"] "MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6776-MONOMER" "biofilm-dependent modulation protein" ["YddX", "Bdm", "f92"] "MFTYYQAENSTAEPALVNAIEQGLRAQHGVVTEDDILMELTKWVEASDNDILSDIYQQTINYVVSGQHPTL" [] [] 0 [] {} 0 "G6782-MONOMER" null ["YddT", "VanX", "DdpX"] "MSDTTELVDLAVIFPDLEIELKYACADNITGKAIYQQARCLLHKDAITALAKSISIAQLSGLQLVIYDAYRPQQAQAMLWQACPDPQYVVDVTVGSNHSRGTAIDLTLRDEHGNILDMGAGFDEMHERSHAYHPSVPPAAQRNRLLLNAIMTGGGFVGISSEWWHFELPQAASYPLLADQFSCFISPGTQHVS" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 "G6783-MONOMER" "oxygen-sensing c-di-GMP phosphodiesterase DosP" ["PdeO", "YddU", "Dos", "DosP", "c-di-GMP phosphodiesterase, heme-regulated"] "MKLTDADNAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKVSAEGKVYYLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEASGMQPDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRTGEKIWIKASISPVYDVLAHLQNLVMTFSDITEERQIRQLEGNILAAMCSSPPFHEMGEIICRNIESVLNESHVSLFALRNGMPIHWASSSHGAEIQNAQSWSATIRQRDGAPAGILQIKTSSGAETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDKAVSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQFVLVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISYDLGKNRDYLLSTAHNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGELYGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPALSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPLKI" [] ["CCO-PM-BAC-NEG"] 0 [] {"PROTOHEME": 1} 1 "G6784-MONOMER" "diguanylate cyclase DosC" ["DgcO", "YddV", "DosC"] "MEMYFKRMKDEWTGLVEQADPPIRAKAAEIAVAHAHYLSIEFYRIVRIDPHAEEFLSNEQVERQLKSAMERWIINVLSAQVDDVERLIQIQHTVAEVHARIGIPVEIVEMGFRVLKKILYPVIFSSDYSAAEKLQVYHFSINSIDIAMEVMTRAFTFSDSSASKEDENYRIFSLLENAEEEKERQIASILSWEIDIIYKILLDSDLGSSLPLSQADFGLWFNHKGRHYFSGIAEVGHISRLIQDFDGIFNQTMRNTRNLNNRSLRVKFLLQIRNTVSQIITLLRELFEEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELWKASL" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"PROTOHEME": 1, "MG+2": 1} 1 -"G6785-MONOMER" "divisome localized glycosyl hydrolase" ["DigH", "YddW"] "MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSKPPATTQQSSQPMRGIWLATVSRLDWPPVSSVNISNPTSRARVQQQAMIDKLDHLQRLGINTVFFQVKPDGTALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWFNPYRVSVNTKPGTIRELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITSIVAEVVSRYPVDGVQFDDYFYTESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIAKVSHTIKSIKPGVEFGVSPAGVWRNRSHDPLGSDTRGAAAYDESYADTRRWVEQGLLDYIAPQIYWPFSRSAARYDVLAKWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMINGGVPELKKQLDLNDAVPEISGTILFREDYLNKPQTQQAVSYLQSRWGS" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM", "CCO-PERI-BAC"] 0 [] {} 0 +"G6785-MONOMER" "divisome localized glycosyl hydrolase" ["DigH", "YddW"] "MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSKPPATTQQSSQPMRGIWLATVSRLDWPPVSSVNISNPTSRARVQQQAMIDKLDHLQRLGINTVFFQVKPDGTALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWFNPYRVSVNTKPGTIRELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITSIVAEVVSRYPVDGVQFDDYFYTESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIAKVSHTIKSIKPGVEFGVSPAGVWRNRSHDPLGSDTRGAAAYDESYADTRRWVEQGLLDYIAPQIYWPFSRSAARYDVLAKWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMINGGVPELKKQLDLNDAVPEISGTILFREDYLNKPQTQQAVSYLQSRWGS" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM", "CCO-PERI-BAC"] 0 [] {} 0 "G6787-MONOMER" "putative anaerobic sulfatase maturation enzyme YdeM" ["YdeM"] "MHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIKQYIAASGNQVYFTWQGGEPTLAGLDFFRKVIHYQQRYAGQKRIFNALQTNGILLNNEWCAFLKEHEFLVGISIDGPQELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFNTLTVINNVNVHYPLEVYHFLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAYGKFMSTIFMQWVKNDVGEIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRIPAKCQQCAYKPICNGGCPKHRITKVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 3} 0 "G6788-MONOMER" "putative sulfatase YdeN" ["YdeN"] "MKSALKKSVVSTSISLILASGMAAFAAHAADDVKLKATKTNVAFSDFTPTEYSTKGKPNIIVLTMDDLGYGQLPFDKGSFDPKTMENREVVDTYKIGIDKAIEAAQKSTPTLLSLMDEGVRFTNGYVAHGVSGPSRAAIMTGRAPARFGVYSNTDAQDGIPLTETFLPELFQNHGYYTAAVGKWHLSKISNVPVPEDKQTRDYHDNFTTFSAEEWQPQNRGFDYFMGFHAAGTAYYNSPSLFKNRERVPAKGYISDQLTDEAIGVVDRAKTLDQPFMLYLAYNAPHLPNDNPAPDQYQKQFNTGSQTADNYYASVYSVDQGVKRILEQLKKNGQYDNTIILFTSDNGAVIDGPLPLNGAQKGYKSQTYPGGTHTPMFMWWKGKLQPGNYDKLISAMDFYPTALDAADISIPKDLKLDGVSLLPWLQDKKQGEPHKNLTWITSYSHWFDEENIPFWDNYHKFVRHQSDDYPHNPNTEDLSQFSYTVRNNDYSLVYTVENNQLGLYKLTDLQQKDNLAAANPQVVKEMQGVVREFIDSSQPPLSEVNQEKFNNIKKALSEAK" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {"CA+2": 1} 0 "G6789-MONOMER" "DNA-binding transcriptional dual regulator YdeO" ["YdeO"] "MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGNTMNALAI" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -2344,12 +2344,12 @@ "G6804-MONOMER" "3-hydroxy-2,4-pentadione 5-phosphate thiolase" ["LsrF", "YneB"] "MADLDDIKDGKDFRTDQPQKNIPFTLKGCGALDWGMQSRLSRIFNPKTGKTVMLAFDHGYFQGPTTGLERIDINIAPLFEHADVLMCTRGILRSVVPPATNRPVVLRASGANSILAELSNEAVALSMDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYYVEKGFERIVAGCPVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQAVVHHNETADRAYELYLSEKQ" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6805-MONOMER" "(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase" ["LsrG", "YneC", "phospho-AI-2 isomerase"] "MHVTLVEINVHEDKVDEFIEVFRQNHLGSVQEEGNLRFDVLQDPEVNSRFYIYEAYKDEDAVAFHKTTPHYKTCVAKLESLMTGPRKKRLFNGLMP" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6806-MONOMER" "trans-aconitate 2-methyltransferase" ["LsrE", "YneD", "Tam"] "MSDWNPSLYLHFSAERSRPAVELLARVPLENVEYVADLGCGPGNSTALLQQRWPAARITGIDSSPAMIAEARSALPDCQFVEADIRNWQPVQALDLIFANASLQWLPDHYELFPHLVSLLNPQGVLAVQMPDNWLEPTHVLMREVAWEQNYPDRGREPLAGVHAYYDILSEAGCEVDIWRTTYYHQMPSHQAIIDWVTATGLRPWLQDLTESEQQLFLKRYHQMLEEQYPLQENGQILLAFPRLFIVARRME" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 -"G6807-MONOMER" "PF01062 family inner membrane protein YneE" ["YneE"] "MIVRPQQHWLRRIFVWHGSVLSKISSRLLLNFLFSIAVIFMLPWYTHLGIKFTLAPFSILGVAIAIFLGFRNNAGYARYVEARKLWGQLMIASRSLLREVKTTLPDSASVREFARLQIAFAHCLRMTLRKQPQAEVLAHYLKTEDLQRVLASNSPANRILLIMGEWLAVQRRNGQLSDILFISLNDRLNDISAVLAGCERIAYTPIPFAYTLILHRTVYLFCIMLPFALVVDLHYMTPFISVLISYTFISLDCLAEELEDPFGTENNDLPLDAICNAIEIDLLQMNDEAEIPAKILPDRHYQLT" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6808-MONOMER" "putative diguanylate cyclase DgcF" ["DgcF", "YneF"] "MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 0 +"G6807-MONOMER" "PF01062 family inner membrane protein YneE" ["YneE"] "MIVRPQQHWLRRIFVWHGSVLSKISSRLLLNFLFSIAVIFMLPWYTHLGIKFTLAPFSILGVAIAIFLGFRNNAGYARYVEARKLWGQLMIASRSLLREVKTTLPDSASVREFARLQIAFAHCLRMTLRKQPQAEVLAHYLKTEDLQRVLASNSPANRILLIMGEWLAVQRRNGQLSDILFISLNDRLNDISAVLAGCERIAYTPIPFAYTLILHRTVYLFCIMLPFALVVDLHYMTPFISVLISYTFISLDCLAEELEDPFGTENNDLPLDAICNAIEIDLLQMNDEAEIPAKILPDRHYQLT" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6808-MONOMER" "putative diguanylate cyclase DgcF" ["DgcF", "YneF"] "MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 0 "G6809-MONOMER" "DUF4186 domain-containing protein YneG" ["YneG"] "MQSLDPLFARLSRSKFRSRFRLGMKERQYCLEKGAPVIEQHAADFVAKRLAPALPANDGKQTPMRGHPVFIAQHATATCCRGCLAKWHNIPQGVSLSEEQQRYIVAVIYHWLVVQMNQP" [] [] 0 [] {} 0 "G6810-MONOMER" "glutaminase 2" ["GlsB", "YneH"] "MAVAMDNAILENILRQVRPLIGQGKVADYIPALATVDGSRLGIAICTVDGQLFQAGDAQERFSIQSISKVLSLVVAMRHYSEEEIWQRVGKDPSGSPFNSLVQLEMEQGIPRNPFINAGALVVCDMLQGRLSAPRQRMLEVVRGLSGVSDISYDTVVARSEFEHSARNAAIAWLMKSFGNFHHDVTTVLQNYFHYCALKMSCVELARTFVFLANQGKAIHIDEPVVTPMQARQINALMATSGMYQNAGEFAWRVGLPAKSGVGGGIVAIVPHEMAIAVWSPELDDAGNSLAGIAVLEQLTKQLGRSVY" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "G6811-MONOMER" "succinate semialdehyde dehydrogenase (NAD(P)+) Sad" ["YneI", "Sad"] "MTITPATHAISINPATGEQLSVLPWAGADDIENALQLAAAGFRDWRETNIDYRAEKLRDIGKALRARSEEMAQMITREMGKPINQARAEVAKSANLCDWYAEHGPAMLKAEPTLVENQQAVIEYRPLGTILAIMPWNFPLWQVMRGAVPIILAGNGYLLKHAPNVMGCAQLIAQVFKDAGIPQGVYGWLNADNDGVSQMIKDSRIAAVTVTGSVRAGAAIGAQAGAALKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIIEEGIASAFTERFVAAAAALKMGDPRDEENALGPMARFDLRDELHHQVEKTLAQGARLLLGGEKMAGAGNYYPPTVLANVTPEMTAFREEMFGPVAAITIAKDAEHALELANDSEFGLSATIFTTDETQARQMAARLECGGVFINGYCASDARVAFGGVKKSGFGRELSHFGLHEFCNIQTVWKDRI" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G6812-MONOMER" "PtrR" ["YneJ", "PtrR"] "MDLTQLEMFNAVAEAGSITQAAAKVHRVPSNLTTRLRQLETELGVDLFIRENQRLRLSPAGHNFLRYSQQILALVDEARSVVAGDEPQGLFSLGSLESTAAVRIPATLAEFNRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPVTRASQVNGSNIYAFRANCSYRRHFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPLAEQWRWLTTWLVWRRGAKTRPLEAFIQLLDVPDSARQGYQ" [] ["CCO-CYTOSOL"] 0 [] {} 1 +"G6812-MONOMER" "putrescine utilization regulator PtrR" ["YneJ", "PtrR", "LysR-type transcriptional regulator"] "MDLTQLEMFNAVAEAGSITQAAAKVHRVPSNLTTRLRQLETELGVDLFIRENQRLRLSPAGHNFLRYSQQILALVDEARSVVAGDEPQGLFSLGSLESTAAVRIPATLAEFNRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPVTRASQVNGSNIYAFRANCSYRRHFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPLAEQWRWLTTWLVWRRGAKTRPLEAFIQLLDVPDSARQGYQ" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6813-MONOMER" "protein YneK" ["YneK"] "MVTPVSISNYISLPDDFPVRNIAPQVKEVLKDFIDALSTIICNEEWRTSLNINSATKKIFNNLDNLSYIQRTSFRGNDTLYNEKVQFKLTYPARNGRHKENIEFQVVINLSPIYLDNFRHDGEINIFCAPNPKPVTMGRVFQTGVERVLFLFLNDFIEQFPMINPGVPIKRAHTPHIEPLPSDHHTAADYLRQFDLLVLNFISRGNFVILPRLWNNSEVHRWFVNKDPNLITAILDITDSELKEDLLQSLMDSLGSNKHVLPEVCICFLSLLAEQESPHFQNLFLFFANMLLHYHQFMNPNESDLNDVLMPASLSDDKIIKHMARRTLKLFVKNETPPKVTHEDLVKNRPRSPVRPPIPATAKTPDLPERH" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6814-MONOMER" "DNA-binding transcriptional repressor RspR" ["RspR", "YdfH"] "MTVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIRPQRGSYVNKISMAQVRNGSFIRQAIECAVARRAASMITESQCYQLEQNLHQQRIAIERKQLDDFFELDDNFHQLLTQIADCQLAWDTIENLKATVDRVRYMSFDHVSPPEMLLRQHLDIFSALQKRDGDAVERAMTQHLQEISESVRQIRQENSDWFSEE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6815-MONOMER" "putative selenoprotein YdfZ" ["YdfZ"] "MTTYDRNRNAITTGSRVMVSGTGHTGKILSIDTEGLTAEQIRRGKTVVVEGCEEKLAPLDLIRLGMN" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -2378,13 +2378,13 @@ "G6839-MONOMER" "mandelate racemase/muconate lactonizing enzyme family protein RspA" ["RspA", "starvation-sensing protein RspA"] "MKIVKAEVFVTCPGRNFVTLKITTEDGITGLGDATLNGRELSVASYLQDHLCPQLIGRDAHRIEDIWQFFYKGAYWRRGPVTMSAISAVDMALWDIKAKAANMPLYQLLGGASREGVMVYCHTTGHSIDEALDDYARHQELGFKAIRVQCGIPGMKTTYGMSKGKGLAYEPATKGQWPEEQLWSTEKYLDFMPKLFDAVRNKFGFNEHLLHDMHHRLTPIEAARFGKSIEDYRMFWMEDPTPAENQECFRLIRQHTVTPIAVGEVFNSIWDCKQLIEEQLIDYIRTTLTHAGGITGMRRIADFASLYQVRTGSHGPSDLSPVCMAAALHFDLWVPNFGVQEYMGYSEQMLEVFPHNWTFDNGYMHPGDKPGLGIEFDEKLAAKYPYEPAYLPVARLEDGTLWNW" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6840-MONOMER" "putative transporter YnfA" ["YnfA"] "MIKTTLLFFATALCEIIGCFLPWLWLKRNASIWLLLPAGISLALFVWLLTLHPAASGRVYAAYGGVYVCTALMWLRVVDGVKLTLYDWTGALIALCGMLIIVAGWGRT" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6841-MONOMER" "DUF1283 domain-containing protein YnfB" ["YnfB"] "MKITLSKRIGLLAILLPCALALSTTVHAETNKLVIESGDSAQSRQHAAMEKEQWNDTRNLRQKVNKRTEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP" ["CCO-OUTER-MEM"] [] 0 [] {} 0 -"G6843-MONOMER" "PF06788 family lipoprotein YnfC" ["YnfC", "UPF0257 family lipoprotein YnfC"] "MKYKLLPCLLAIFLTGCDRTEVTLSFTPEMASFSNEFDFDPLRGPVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDSLELLDLENNTVVALVLDANYYRDAETLEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKSNDKTLSVSATPSTDPIKKLDYTAVTLLNNQRVGNVKQSCEYDSHANPVDCQLIIVDEGVKPAVERVYTIKNTIDYY" [] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"G6843-MONOMER" "PF06788 family lipoprotein YnfC" ["YnfC", "UPF0257 family lipoprotein YnfC"] "MKYKLLPCLLAIFLTGCDRTEVTLSFTPEMASFSNEFDFDPLRGPVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDSLELLDLENNTVVALVLDANYYRDAETLEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKSNDKTLSVSATPSTDPIKKLDYTAVTLLNNQRVGNVKQSCEYDSHANPVDCQLIIVDEGVKPAVERVYTIKNTIDYY" [] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6844-MONOMER" "DUF1161 domain-containing protein YnfD" ["YnfD"] "MKLSTCCAALLLALASPAVLAAPGSCERIQSDISQRIINNGVPESSFTLSIVPNDQVDQPDSQVVGHCANDTHKILYTRTTSGNVSAPAQSSQDGAPAEPQ" [] ["CCO-EXTRACELLULAR"] 0 [] {} 0 -"G6845-MONOMER" "putative selenate reductase YnfE" ["YnfE"] "MSKNERMVGISRRTLVKSTAIGSLALAAGGFSLPFTLRNAAAAVQQAREKVVWGACSVNCGSRCALRLHVKDNEVTWVETDNTGSDEYGNHQVRACLRGRSIRRRINHPDRLNYPMKRVGKRGEGKFERISWDEALDTIASSLKKTVEQYGNEAVYIQYSSGIVGGNMTRSSPSASAVKRLMNCYGGSLNQYGSYSTAQISCAMPYTYGSNDGNSTTDIENSKLVVMFGNNPAETRMSGGGITYLLEKAREKSNAKMIVIDPRYTDTAAGREDEWLPIRPGTDAALVAGIAWVLINENLVDQPFLDKYCVGYDEKTLPADAPKNGHYKAYILGEGDDKTAKTPQWASQITGIPEDRIIKLAREIGTAKPAYICQGWGPQRQANGELTARAIAMLPILTGNVGISGGNSGARESTYTITIERLPVLDNPVKTSISCFSWTDAIDHGPQMTAIRDGVRGKDKLDVPIKFIWNYAGNTLVNQHSDINKTHEILQDESKCEMIVVIENFMTSSAKYADILLPDLMTVEQEDIIPNDYAGNMGYLIFLQPVTSEKFERKPIYWILSEVAKRLGPDVYQKFTEGRTQEQWLQHLYAKMLAKDPALPSYDELKKMGIYKRKDPNGHFVAYKAFRDDPEANPLKTPSGKIEIYSSRLAEIARTWELEKDEVISPLPVYASTFEGWNSPERRTFPLQLFGFHYKSRTHSTYGNIDLLKAACRQEVWINPIDAQKRGIANGDMVRVFNHRGEVRLPAKVTPRILPGVSAMGQGAWHEANMSGDKIDHGGCVNTLTTLRPSPLAKGNPQHTNLVEIEKI" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {"CPD-7": 1, "CPD-15873": 1} 1 -"G6846-MONOMER" "putative selenate reductase YnfF" ["YnfF"] "MKIHTTEALMKAEISRRSLMKTSALGSLALASSAFTLPFSQMVRAAEAPVEEKAVWSSCTVNCGSRCLLRLHVKDDTVYWVESDTTGDDVYGNHQVRACLRGRSIRRRMNHPDRLKYPMKRVGKRGEGKFERISWDEALDTISDNLRRILKDYGNEAVHVLYGTGVDGGNITNSNVPYRLMNSCGGFLSRYGSYSTAQISAAMSYMFGANDGNSPDDIANTKLVVMFGNNPAETRMSGGGVTYYVEQARERSNARMIVIDPRYNDTAAGREDEWLPIRPGTDGALACAIAWVLITENMVDQPFLDKYCVGYDEKTLPANAPRNAHYKAYILGEGPDGIAKTPEWAAKITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTSRAIAMLSVLTGNVGINGGNSGVREGSWDLGVEWFPMLENPVKTQISVFTWTDAIDHGTEMTATRDGVRGKEKLDVPIKFLWCYASNTLINQHGDINHTHEVLQDDSKCEMIVGIDHFMTASAKYCDILLPDLMPTEQEDLISHESAGNMGYVILAQPATSAKFERKPIYWMLSEVAKRLGPDVYQTFTEGRSQHEWIKYLHAKTKERNPEMPDYEEMKTTGIFKKKCPEEHYVAFRAFREDPQANPLKTPSGKIEIYSERLAKIADTWELKKDEIIHPLPAYTPGFDGWDDPLRKTYPLQLTGFHYKARTHSSYGNIDVLQQACPQEVWINPIDAQARGIRHGDTVRVFNNNGEMLIAAKVTPRILPGVTAIGQGAWLKADMFGDRVDHGGSINILTSHRPSPLAKGNPSHSNLVQIEKV" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {"CPD-7": 1, "CPD-15873": 1} 1 +"G6845-MONOMER" "putative selenate reductase YnfE" ["YnfE"] "MSKNERMVGISRRTLVKSTAIGSLALAAGGFSLPFTLRNAAAAVQQAREKVVWGACSVNCGSRCALRLHVKDNEVTWVETDNTGSDEYGNHQVRACLRGRSIRRRINHPDRLNYPMKRVGKRGEGKFERISWDEALDTIASSLKKTVEQYGNEAVYIQYSSGIVGGNMTRSSPSASAVKRLMNCYGGSLNQYGSYSTAQISCAMPYTYGSNDGNSTTDIENSKLVVMFGNNPAETRMSGGGITYLLEKAREKSNAKMIVIDPRYTDTAAGREDEWLPIRPGTDAALVAGIAWVLINENLVDQPFLDKYCVGYDEKTLPADAPKNGHYKAYILGEGDDKTAKTPQWASQITGIPEDRIIKLAREIGTAKPAYICQGWGPQRQANGELTARAIAMLPILTGNVGISGGNSGARESTYTITIERLPVLDNPVKTSISCFSWTDAIDHGPQMTAIRDGVRGKDKLDVPIKFIWNYAGNTLVNQHSDINKTHEILQDESKCEMIVVIENFMTSSAKYADILLPDLMTVEQEDIIPNDYAGNMGYLIFLQPVTSEKFERKPIYWILSEVAKRLGPDVYQKFTEGRTQEQWLQHLYAKMLAKDPALPSYDELKKMGIYKRKDPNGHFVAYKAFRDDPEANPLKTPSGKIEIYSSRLAEIARTWELEKDEVISPLPVYASTFEGWNSPERRTFPLQLFGFHYKSRTHSTYGNIDLLKAACRQEVWINPIDAQKRGIANGDMVRVFNHRGEVRLPAKVTPRILPGVSAMGQGAWHEANMSGDKIDHGGCVNTLTTLRPSPLAKGNPQHTNLVEIEKI" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {"CPD-7": 1, "CPD-15873": 1} 1 +"G6846-MONOMER" "putative selenate reductase YnfF" ["YnfF"] "MKIHTTEALMKAEISRRSLMKTSALGSLALASSAFTLPFSQMVRAAEAPVEEKAVWSSCTVNCGSRCLLRLHVKDDTVYWVESDTTGDDVYGNHQVRACLRGRSIRRRMNHPDRLKYPMKRVGKRGEGKFERISWDEALDTISDNLRRILKDYGNEAVHVLYGTGVDGGNITNSNVPYRLMNSCGGFLSRYGSYSTAQISAAMSYMFGANDGNSPDDIANTKLVVMFGNNPAETRMSGGGVTYYVEQARERSNARMIVIDPRYNDTAAGREDEWLPIRPGTDGALACAIAWVLITENMVDQPFLDKYCVGYDEKTLPANAPRNAHYKAYILGEGPDGIAKTPEWAAKITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTSRAIAMLSVLTGNVGINGGNSGVREGSWDLGVEWFPMLENPVKTQISVFTWTDAIDHGTEMTATRDGVRGKEKLDVPIKFLWCYASNTLINQHGDINHTHEVLQDDSKCEMIVGIDHFMTASAKYCDILLPDLMPTEQEDLISHESAGNMGYVILAQPATSAKFERKPIYWMLSEVAKRLGPDVYQTFTEGRSQHEWIKYLHAKTKERNPEMPDYEEMKTTGIFKKKCPEEHYVAFRAFREDPQANPLKTPSGKIEIYSERLAKIADTWELKKDEIIHPLPAYTPGFDGWDDPLRKTYPLQLTGFHYKARTHSSYGNIDVLQQACPQEVWINPIDAQARGIRHGDTVRVFNNNGEMLIAAKVTPRILPGVTAIGQGAWLKADMFGDRVDHGGSINILTSHRPSPLAKGNPSHSNLVQIEKV" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {"CPD-7": 1, "CPD-15873": 1} 1 "G6847-MONOMER" "putative oxidoreductase YnfG" ["YnfG"] "MTTQYGFFIDSSRCTGCKTCELACKDFKDLGPEVSFRRIYEYAGGDWQEDNGVWHQNVFAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAEKGHMTKCDGCYSRVAEGKQPICVESCPLRALEFGPIEELRQKHGTLAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPEEV" [] [] 1 [] {"CPD-7": 4} 1 "G6848-MONOMER" "putative menaquinol dehydrogenase" ["YnfH"] "MGNGWHEWPLVIFTVLGQCVVGALIVSGIGWFAAKNDADRQRIVRGMFFLWLLMGVGFIASVMHLGSPLRAFNSLNRIGASGLSNEIAAGSIFFAVGGLWWLVAVIGKMPQALGKLWLLFSMALGVIFVWMMTCVYQIDTVPTWHNGYTTLAFFLTVLLSGPILAAAILRAARVTFNTTPFAIISVLALIACAGVIVLQGLSLASIHSSVQQASALVPDYASLQVWRVVLLCAGLGCWLCPLIRRREPHVAGLILGLILILGGEMIGRVLFYGLHMTVGMAIAG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"G6849-MONOMER" "redox enzyme maturation protein DmsD" ["DmsD", "YnfI"] "MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR" ["CCO-CYTOSOL"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 1 [] {} 0 +"G6849-MONOMER" "redox enzyme maturation protein DmsD" ["DmsD", "YnfI"] "MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 1 [] {} 0 "G6851-MONOMER" "dethiobiotin synthetase BidA" ["BidA", "YnfK"] "MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGSKETPEGLRNKDALVLQSVSTIELPYEAVNPIALSEEESSVAHSCPINYTLISNGLANLTEKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIANDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIRLAMLRSVLAVDRVTV" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "G6853-MONOMER" "putative DNA-binding transcriptional regulator YnfL" ["YnfL"] "MNIELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQALEQQIGARLLARTNRSVLLTAAGKQFLADSRQILSMVDDAAARAERLHQGEAGELRIGFTSSAPFIRAVSDTLSLFRRDYPDVHLQTREMNTREQIAPLIEGTLDMGLLRNTALPESLEHAVIVHEPLMAMIPHDHPLANNPNVTLAELAKEPFVFFDPHVGTGLYDDILGLMRRYHLTPVITQEVGEAMTIIGLVSAGLGVSILPASFKRVQLNEMRWVPIAEEDAVSEMWLVWPKHHEQSPAARNFRIHLLNALR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6855-MONOMER" "periplasmic chaperone Asr" ["Asr"] "MKKVLALVVAAAMGLSSAAFAAETTTTPAPTATTTKAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAKKHSHQQPAKPAAQPAA" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 @@ -2392,25 +2392,25 @@ "G6859-MONOMER" null ["YdgG", "TqsA"] "MAKPIITLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMARPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQTAGGQSIAVLLSDLNKE" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6860-MONOMER" "DUF1471 domain-containing protein YdgH" ["YdgH"] "MKLKNTLLASALLSAMAFSVNAATELTPEQAAAVKPFDRVVVTGRFNAIGEAVKAVSRRADKEGAASFYVVDTSDFGNSGNWRVVADLYKADAEKAEETSNRVINGVVELPKDQAVLIEPFDTVTVQGFYRSQPEVNDAITKAAKAKGAYSFYIVRQIDANQGGNQRITAFIYKKDAKKRIVQSPDVIPADSEAGRAALAAGGEAAKKVEIPGVATTASPSSEVGRFFETQSSKGGRYTVTLPDGTKVEELNKATAAMMVPFDSIKFSGNYGNMTEVSYQVAKRAAKKGAKYYHITRQWQERGNNLTVSADLYK" [] [] 0 [] {} 0 "G6862-MONOMER" "dihydromonapterin reductase" ["YdgB", "FolM"] "MGKTQPLPILITGGGRRIGLALAWHFINQKQPVIVSYRTHYPAIDGLINAGAQCIQADFSTNDGVMAFADEVLKSTHGLRAILHNASAWMAEKPGAPLADVLACMMQIHVNTPYLLNHALERLLRGHGHAASDIIHFTDYVVERGSDKHIAYAASKAALDNMTRSFARKLAPEVKVNSIAPSLILFNEHDDAEYRQQALNKSLMKTAPGEKEVIDLVDYLLTSCFVTGRSFPLDGGRHLR" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G6863-MONOMER" "GlpM family protein" ["YdgC"] "MGLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIFSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICWIKLH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6865-MONOMER" "DUF945 domain-containing protein YdgA" ["YdgA"] "MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQLKLTAPESNLEVSYQNYHRGVFSSQLQLLVKPIAGKENPWIKSGQSVIFNESVDHGPFPLAQLKKLNLIPSMASIQTTLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLKPLNYEQKDEKVAFSGGEFQLNADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLKTDGSSTLASFGERVGNQKLSLEKMTISVEGKELALLEGMEISGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYNAQTQALLAQPEIANNPELYQEKVTEAFFSALPLMLKGDPVITIAPLSWKNSQGESALNLSLFLKDPATTKEAPQTLAQEVDRSVKSLDAKLTIPVDMATEFMTQVAKLEGYQEDQAKKLAKQQVEGASAMGQMFRLTTLQDNTITTSLQYANGQITLNGQKMSLEDFVGMFAMPALNVPAVPAIPQQ" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 +"G6863-MONOMER" "GlpM family protein" ["YdgC"] "MGLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIFSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICWIKLH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6865-MONOMER" "DUF945 domain-containing protein YdgA" ["YdgA"] "MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQLKLTAPESNLEVSYQNYHRGVFSSQLQLLVKPIAGKENPWIKSGQSVIFNESVDHGPFPLAQLKKLNLIPSMASIQTTLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLKPLNYEQKDEKVAFSGGEFQLNADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLKTDGSSTLASFGERVGNQKLSLEKMTISVEGKELALLEGMEISGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYNAQTQALLAQPEIANNPELYQEKVTEAFFSALPLMLKGDPVITIAPLSWKNSQGESALNLSLFLKDPATTKEAPQTLAQEVDRSVKSLDAKLTIPVDMATEFMTQVAKLEGYQEDQAKKLAKQQVEGASAMGQMFRLTTLQDNTITTSLQYANGQITLNGQKMSLEDFVGMFAMPALNVPAVPAIPQQ" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "G6866-MONOMER" "outer membrane porin family protein UidC" ["GusC", "UidC"] "MRKIVAMAVICLTAASGLTSAYAAQLADDEAGLRIRLKNELRRADKPSAGAGRDIYAWVQGGLLDFNSGYYSNIIGVEGGAYYVYKLGARADMSTRWYLDGDKSFGFALGAVKIKPSENSLLKLGRFGTDYSYGSLPYRIPLMAGSSQRTLPTVSEGALGYWALTPNIDLWGMWRSRVFLWTDSTTGIRDEGVYNSQTGKYDKHRARSFLAASWHDDTSRYSLGASVQKDVSNQIQSILEKSIPLDPNYTLKGELLGFYAQLEGLSRNTSQPNETALVSGQLTWNAPWGSVFGSGGYLRHAMNGAVVDTDIGYPFSLSLDRNREGMQSWQLGVNYRLTPQFTLTFAPIVTRGYESSKRDVRIEGTGILGGMNYRVSEGPLQGMNFFLAADKGREKRDGSTLGDRLNYWDVKMSIQYDFMLK" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 "G6867-MONOMER" "DNA-binding transcriptional repressor UidR" ["GusR", "UidR"] "MMDNMQTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQDQERALARFREPIEGIHFVDYMVESIVSLTHEAFGQRALVVEIMAEGMRNPQVAAMLKNKHMTITEFVAQRMRDAQQKGEISPDINTAMTSRLLLDLTYGVLADIEAEDLAREASFAQGLRAMIGGILTAS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6868-MONOMER" "putative oxidoreductase YdgJ" ["YdgJ"] "MSDNIRVGLIGYGYASKTFHAPLIAGTPGQELAVISSSDETKVKADWPTVTVVSEPKHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSLGRVLSVFHNRRWDSDFLTLKGLLAEGVLGEVAYFESHFDRFRPQVRDRWREQGGPGSGIWYDLAPHLLDQAITLFGLPVSMTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIVHGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRDGVLTRVEGEERVEETLLTVPGNYPAYYAAIRDALNGDGENPVPASQAIQVMELIELGIESAKHRATLCLA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6869-MONOMER" "H-NS- and StpA-binding protein" ["YdgT", "Cnu"] "MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQVPKSVWHYVQ" [] ["CCO-BAC-NUCLEOID", "CCO-CYTOSOL"] 0 [] {} 0 -"G6870-MONOMER" "DUF2569 domain-containing inner membrane protein YdgK" ["RsxP", "YdgK"] "MTTTTPQRIGGWLLGPLAWLLVALLSTTLALLLYTAALSSPQTFQTLGGQALTTQILWGVSFITAIALWYYTLWLTIAFFKRRRCVPKHYIIWLLISVLLAVKAFAFSPVEDGIAVRQLLFTLLATALIVPYFKRSSRVKATFVNP" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6870-MONOMER" "DUF2569 domain-containing inner membrane protein YdgK" ["RsxP", "YdgK"] "MTTTTPQRIGGWLLGPLAWLLVALLSTTLALLLYTAALSSPQTFQTLGGQALTTQILWGVSFITAIALWYYTLWLTIAFFKRRRCVPKHYIIWLLISVLLAVKAFAFSPVEDGIAVRQLLFTLLATALIVPYFKRSSRVKATFVNP" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6871-MONOMER" "SoxR [2Fe-2S] reducing system protein RsxA" ["YdgL", "RsxA"] "MTDYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLATTFVMTLASICAWLIDTWILIPLNLIYLRTLAFILVIAVVVQFTEMVVRKTSPVLYRLLGIFLPLITTNCAVLGVALLNINLGHNFLQSALYGFSAAVGFSLVMVLFAAIRERLAVADVPAPFRGNAIALITAGLMSLAFMGFSGLVKL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"G6872-MONOMER" "SoxR [2Fe-2S] reducing system protein RsxB" ["YdgM", "RsxB"] "MNAIWIAVAAVSLLGLAFGAILGYASRRFAVEDDPVVEKIDEILPQSQCGQCGYPGCRPYAEAISCNGEKINRCAPGGEAVMLKIAELLNVEPQPLDGEAQEITPARMVAVIDENNCIGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQPVAETPDSWKWDLNTIPVRIIPVEHHA" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {"CPD-7": 3} 1 +"G6872-MONOMER" "SoxR [2Fe-2S] reducing system protein RsxB" ["YdgM", "RsxB"] "MNAIWIAVAAVSLLGLAFGAILGYASRRFAVEDDPVVEKIDEILPQSQCGQCGYPGCRPYAEAISCNGEKINRCAPGGEAVMLKIAELLNVEPQPLDGEAQEITPARMVAVIDENNCIGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQPVAETPDSWKWDLNTIPVRIIPVEHHA" [] ["CCO-PM-BAC-NEG"] 0 [] {"CPD-7": 3} 1 "G6873-MONOMER" "SoxR [2Fe-2S] reducing system protein RsxC" ["YdgN", "RsxC", "member of SoxR-reducing complex"] "MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIPRDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQGGGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSNDISLRVIPTKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKSAAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVADPRKTAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKREQQPANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAVPEEQVDPRKAAVAAAIARAQAKKAAQQKVVNED" [] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {"CPD-7": 2} 1 "G6874-MONOMER" "SoxR [2Fe-2S] reducing system protein RsxD" ["YdgO", "RsxD"] "MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTLVQILLASVSALLAEALVLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQVIFSGHTASGGDMNTLRLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGAGWQWVNLAWLAGGVWLLWQKAIRWHIPLSFLVTLALCAMLGWLFSPETLAAPQIHLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHRKG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"G6875-MONOMER" "SoxR [2Fe-2S] reducing system flavoprotein RsxG" ["YdgP", "RsxG"] "MLKTIRKHGITLALFAAGSTGLTAAINQMTKTTIAEQASLQQKALFDQVLPAERYNNALAQSCYLVTAPELGKGEHRVYIAKQDDKPVAAVLEATAPDGYSGAIQLLVGADFNGTVLGTRVTEHHETPGLGDKIELRLSDWITHFAGKKISGADDAHWAVKKDGGDFDQFTGATITPRAVVNAVKRAGLYAQTLPAQLSQLPACGE" ["CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 +"G6875-MONOMER" "SoxR [2Fe-2S] reducing system flavoprotein RsxG" ["YdgP", "RsxG"] "MLKTIRKHGITLALFAAGSTGLTAAINQMTKTTIAEQASLQQKALFDQVLPAERYNNALAQSCYLVTAPELGKGEHRVYIAKQDDKPVAAVLEATAPDGYSGAIQLLVGADFNGTVLGTRVTEHHETPGLGDKIELRLSDWITHFAGKKISGADDAHWAVKKDGGDFDQFTGATITPRAVVNAVKRAGLYAQTLPAQLSQLPACGE" ["CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "G6876-MONOMER" "SoxR [2Fe-2S] reducing system protein RsxE" ["YdgQ", "RsxE"] "MSEIKDVIVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLATTLVLTLTNLTISTLRHWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAFAAKKGPALSALDGFSIGMGATCAMFVLGSLREIIGNGTLFDGADALLGSWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAGKYLIDERMKKRRAEAAAERALPNGETGNV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "G6880-MONOMER" "anhydro-N-acetylmuramic acid kinase" ["YdhH", "AnmK"] "MKSGRFIGVMSGTSLDGVDVVLATIDEHRVAQLASLSWPIPVSLKQAVLDICQGQQLTLSQFGQLDTQLGQLFADAVNALLKEQNLQARDIVAIGCHGQTVWHEPTGVAPHTLQIGDNNQIVARTGITVVGDFRRRDIALGGQGAPLVPAFHHALLAHPTERRMVLNIGGIANLSLLIPGQPVGGYDTGPGNMLMDAWIWRQAGKPYDKDAEWARAGKVILPLLQNMLSDPYFSQPAPKSTGREYFNYGWLERHLRHFPGVDPRDVQATLAELTAVTISEQVLLSGGCERLMVCGGGSRNPLLMARLAALLPGTEVTTTDAVGISGDDMEALAFAWLAWRTLAGLPGNLPSVTGASQETVLGAIFPANP" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6881-MONOMER" "outer membrane lipoprotein SlyB" ["SlyB"] "MIKRVLVVSMVGLSLVGCVNNDTLSGDVYTASEAKQVQNVSYGTIVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTVGGGTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSPGQRVVLASNGSQVTVSPR" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 "G6882-MONOMER" "DNA-binding transcriptional dual regulator SlyA" ["SlyA"] "MESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLISEMEAVINKTRAEILHGISAEELEQLITLIAKLEHNIIELQAKG" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G6883-MONOMER" "DUF1656 domain-containing protein YdhI" ["YdhI"] "MKFMLNATGLPLQDLVFGASVYFPPFFKAFAFGFVIWLVVHRLLRGWIYAGDIWHPLLMDLSLFAICVCLALAILIAW" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6883-MONOMER" "DUF1656 domain-containing protein YdhI" ["YdhI"] "MKFMLNATGLPLQDLVFGASVYFPPFFKAFAFGFVIWLVVHRLLRGWIYAGDIWHPLLMDLSLFAICVCLALAILIAW" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6884-MONOMER" "putative membrane fusion protein YdhJ" ["YdhJ"] "MSIKTIKYFSTIIVAVVAVLAGWWLWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFISAEELDTANLNVKAMQASVDAAQATLKQAQWQLAQTEIRAPVSGWVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSIGRAIYDQSVESDSSLIPDVKPNVPWVRLAQRVPVRFALDKVPGDVTLVSGTTCSIAVGQ" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6885-MONOMER" "putative transporter YdhK" ["YdhK"] "MNASSWSLRNLPWFRATLAQWRYALRNTIAMCLALTVAYYLNLDEPYWAMTSAAVVSFPTVGGVISKSLGRIAGSLLGAIAALLLAGHTLNEPWFFLLSMSAWLGFCTWACAHFTNNVAYAFQLAGYTAAIIAFPMVNITEASQLWDIAQARVCEVIVGILCGGMMMMILPSSSDATALLTALKNMHARLLEHASLLWQPETTDAIRAAHEGVIGQILTMNLLRIQAFWSHYRFRQQNARLNALLHQQLRMTSVISSLRRMLLNWPSPPGATREILEQLLTALASSQTDVYTVARIIAPLRPTNVADYRHVAFWQRLRYFCRLYLQSSQELHRLQSGVDDHTRLPRTSGLARHTDNAEAMWSGLRTFCTLMMIGAWSIASQWDAGANALTLAAISCVLYSAVAAPFKSLSLLMRTLVLLSLFSFVVKFGLMVQISDLWQFLLFLFPLLATMQLLKLQMPKFAALWGQLIVFMGSFIAVTNPPVYDFADFLNDNLAKIVGVALAWLAFAILRPGSDARKSRRHIRALRRDFVDQLSRHPTLSESEFESLTYHHVSQLSNSQDALARRWLLRWGVVLLNCSHVVWQLRDWESRSDPLSRVRDNCISLLRGVMSERGVQQKSLAATLEELQRICDSLARHHQPAARELAAIVWRLYCSLSQLEQAPPQGTLAS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6885-MONOMER" "putative transporter YdhK" ["YdhK"] "MNASSWSLRNLPWFRATLAQWRYALRNTIAMCLALTVAYYLNLDEPYWAMTSAAVVSFPTVGGVISKSLGRIAGSLLGAIAALLLAGHTLNEPWFFLLSMSAWLGFCTWACAHFTNNVAYAFQLAGYTAAIIAFPMVNITEASQLWDIAQARVCEVIVGILCGGMMMMILPSSSDATALLTALKNMHARLLEHASLLWQPETTDAIRAAHEGVIGQILTMNLLRIQAFWSHYRFRQQNARLNALLHQQLRMTSVISSLRRMLLNWPSPPGATREILEQLLTALASSQTDVYTVARIIAPLRPTNVADYRHVAFWQRLRYFCRLYLQSSQELHRLQSGVDDHTRLPRTSGLARHTDNAEAMWSGLRTFCTLMMIGAWSIASQWDAGANALTLAAISCVLYSAVAAPFKSLSLLMRTLVLLSLFSFVVKFGLMVQISDLWQFLLFLFPLLATMQLLKLQMPKFAALWGQLIVFMGSFIAVTNPPVYDFADFLNDNLAKIVGVALAWLAFAILRPGSDARKSRRHIRALRRDFVDQLSRHPTLSESEFESLTYHHVSQLSNSQDALARRWLLRWGVVLLNCSHVVWQLRDWESRSDPLSRVRDNCISLLRGVMSERGVQQKSLAATLEELQRICDSLARHHQPAARELAAIVWRLYCSLSQLEQAPPQGTLAS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6886-MONOMER" "superoxide dismutase (Cu-Zn)" ["SodC", "bacteriocuprein"] "MKRFSLAILALVVATGAQAASEKVEMNLVTSQGVGQSIGSVTITETDKGLEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAESAGGHLDPQNTGKHEGPEGAGHLGDLPALVVNNDGKATDAVIAPRLKSLDEIKDKALMVHVGGDNMSDQPKPLGGGGERYACGVIK" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {"CU+2": 1, "ZN+2": 1} 0 "G6887-MONOMER" "putative oxidoreductase YdhF" ["YdhF"] "MVQRITIAPQGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDLGVTTVDHADIYGGYQCEAAFGEALKLAPHLRERMEIVSKCGIATTAREENVIGHYITDRDHIIKSAEQSLINLATDHLDLLLIHRPDPLMDADEVADAFKHLHQSGKVRHFGVSNFTPAQFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRVRPMAWSCLGGGRLFNDDYFQPLRDELAVVAEELNAGSIEQVVYAWVLRLPSQPLPIIGSGKIERVRAAVEAETLKMTRQQWFRIRKAALGYDVP" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6888-MONOMER" "DUF1289 domain-containing protein YdhL" ["YdhL"] "MAEQLEFFPVQSPCRGICQSDERGFCRGCFRSRDERFNWNKMSDGEKQEVLRLCRQRLMRKLRANKPASSDEPEQPSLF" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -2427,7 +2427,7 @@ "G6901-MONOMER" "putative oxidoreductase YdhV" ["YdhV"] "MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 0 "G6902-MONOMER" "putative 4Fe-4S ferredoxin-like protein YdhY" ["YdhY"] "MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 4} 0 "G6903-MONOMER" "fumarase D" ["FumD", "YdhZ"] "MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6904-MONOMER" "L,D-transpeptidase LdtE" ["YnhG", "LdtE"] "MKRASLLTLTLIGAFSAIQAAWAVDYPLPPTGSRLVGQNQTYTVQEGDKNLQAIARRFDTAAMLILEANNTIAPVPKPGTTITIPSQLLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTWTPTAGIRQRSLERGIKLPPVVPAGPNNPLGRYALRLAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIKALFSSVRTGTPVKVINEPVKYSVEPNGMRYVEVHRPLSAEEQQNVQTMPYTLPAGFTQFKDNKAVDQKLVDKALYRRAGYPVSVSSGATPAASNAPSVESAQNGEPEQGNMLRVTQ" [] ["CCO-EXTRACELLULAR", "CCO-PERI-BAC"] 0 [] {} 0 +"G6904-MONOMER" "L,D-transpeptidase LdtE" ["YnhG", "LdtE"] "MKRASLLTLTLIGAFSAIQAAWAVDYPLPPTGSRLVGQNQTYTVQEGDKNLQAIARRFDTAAMLILEANNTIAPVPKPGTTITIPSQLLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTWTPTAGIRQRSLERGIKLPPVVPAGPNNPLGRYALRLAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIKALFSSVRTGTPVKVINEPVKYSVEPNGMRYVEVHRPLSAEEQQNVQTMPYTLPAGFTQFKDNKAVDQKLVDKALYRRAGYPVSVSSGATPAASNAPSVESAQNGEPEQGNMLRVTQ" [] ["CCO-PERI-BAC"] 0 [] {} 0 "G6905-MONOMER" "sulfur carrier protein SufE" ["YnhA", "SufE", "sulfur acceptor for SufS cysteine desulfurase"] "MALLPDKEKLLRNFLRCANWEEKYLYIIELGQRLPELRDEDRSPQNSIQGCQSQVWIVMRQNAQGIIELQGDSDAAIVKGLIAVVFILYDQMTPQDIVNFDVRPWFEKMALTQHLTPSRSQGLEAMIRAIRAKAAALS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6906-MONOMER" "L-cysteine desulfurase" ["CsdB", "YnhB", "SufS"] "MIFSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLLG" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6907-MONOMER" "Fe-S cluster scaffold complex subunit SufD" ["YnhC", "SufD", "SufD component of SufBCD Fe-S cluster scaffold complex"] "MAGLPNSSNALQQWHHLFEAEGTKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDSVRLVFVDGRYVPALSDATEGSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQQVLARIGQRLPGGAR" [] [] 1 [] {} 1 @@ -2436,7 +2436,7 @@ "G6911-MONOMER" "uncharacterized protein YdiH" ["YdiH"] "MSTQLDPTQLAIEFLRRDQSNLSPAQYLKRLKQLELEFADLLTLSSAELKEEIYFAWRLGVH" [] [] 0 [] {} 0 "G6912-MONOMER" "1,4-dihydroxy-2-naphthoyl-CoA hydrolase" ["MenI", "YdiI"] "MIWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGRVRGVCKPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAIL" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G6913-MONOMER" "D-2-hydroxyglutarate dehydrogenase" ["YdiJ", "D2HGDH", "putative FAD-linked oxidoreductase YdiJ"] "MIPQISQAPGVVQLVLNFLQELEQQGFTGDTATSYADRLTMSTDNSIYQLLPDAVVFPRSTADVALIARLAAQERYSSLIFTPRGGGTGTNGQALNQGIIVDMSRHMNRIIEINPEEGWVRVEAGVIKDQLNQYLKPFGYFFAPELSTSNRATLGGMINTDASGQGSLVYGKTSDHVLGVRAVLLGGDILDTQPLPVELAETLGKSNTTIGRIYNTVYQRCRQQRQLIIDNFPKLNRFLTGYDLRHVFNDEMTEFDLTRILTGSEGTLAFITEARLDITRLPKVRRLVNVKYDSFDSALRNAPFMVEARALSVETVDSKVLNLAREDIVWHSVSELITDVPDQEMLGLNIVEFAGDDEALIDERVNALCARLDELIASHQAGVIGWQVCRELAGVERIYAMRKKAVGLLGNAKGAAKPIPFAEDTCVPPEHLADYIAEFRALLDSHGLSYGMFGHVDAGVLHVRPALDMCDPQQEILMKQISDDVVALTAKYGGLLWGEHGKGFRAEYSPAFFGEELFAELRKVKAAFDPHNRLNPGKICPPEGLDAPMMKVDAVKRGTFDRQIPIAVRQQWRGAMECNGNGLCFNFDARSPMCPSMKITQNRIHSPKGRATLVREWLRLLADRGVDPLKLEQELPESGVSLRTLIARTRNSWHANKGEYDFSHEVKEAMSGCLACKACSTQCPIKIDVPEFRSRFLQLYHTRYLRPLRDHLVATVESYAPLMARAPKTFNFFINQPLVRKLSEKHIGMVDLPLLSVPSLQQQMVGHRSANMTLEQLESLNAEQKARTVLVVQDPFTSYYDAQVVADFVRLVEKLGFQPVLLPFSPNGKAQHIKGFLNRFAKTAKKTADFLNRMAKLGMPMVGVDPALVLCYRDEYKLALGEERGEFNVLLANEWLASALESQPVATVSGESWYFFGHCTEVTALPGAPAQWAAIFARFGAKLENVSVGCCGMAGTYGHEAKNHENSLGIYELSWHQAMQRLPRNRCLATGYSCRSQVKRVEGTGVRHPVQALLEIIK" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G6914-MONOMER" "putative transporter YdiK" ["YdiK"] "MVNVRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTLDNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQPEEILEELGEIEKPNK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6914-MONOMER" "putative transporter YdiK" ["YdiK"] "MVNVRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTLDNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQPEEILEELGEIEKPNK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6915-MONOMER" "DUF1870 domain-containing protein YdiL" ["YdiL"] "MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERLC" [] [] 0 [] {} 0 "G6918-MONOMER" "putative acyl-CoA dehydrogenase YdiO" ["YdiO"] "MDFSLTEEQELLLASIRELITTNFPEEYFRTCDQNGTYPREFMRALADNGISMLGVPEEFGGIPADYVTQMLALMEVSKCGAPAFLITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYINGQKTFITGAKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKINPLHKIGWHMLSTCEVYLDNVEVEESDMVGEEGMGFLNVMYNFEMERLINAARSTGFAECAFEDAARYANQRIAFGKPIGHNQMIQEKLALMAIKIDNMRNMVLKVAWQADQHQSLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILKDYQNK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6919-MONOMER" "DNA-binding transcriptional regulator YdiP" ["YdiP"] "MYQRCFDNASETLFVAGKTPRLSRFAFSDDPKWESGHHVHDNETELIYVKKGVARFTIDSSLYVAHADDIVVIERGRLHAVASDVNDPATTCTCALYGFQFQGAEENQLLQPHSCPVIAAGQGKEVIKTLFNELSVILPQSKNSQTSSLWDAFAYTLAILYYENFKNAYRSEQGYIKKDVLIKDILFYLNNNYREKITLEQLSKKFRASVSYICHEFTKEYRISPINYVIQRRMTEAKWSLTNTELSQAEISWRVGYENVDHFAKLFLRHVGCSPSDYRRQFKNCFAEQEILSEFPQPVSLVG" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -2450,16 +2450,16 @@ "G6928-MONOMER" "acid-inducible putative outer membrane protein YdiY" ["YdiY"] "MKLLKTVPAIVMLAGGMFASLNAAADDSVFTVMDDPASAKKPFEGNLNAGYLAQSGNTKSSSLTADTTMTWYGHTTAWSLWGNASNTSSNDERSSEKYAAGGRSRFNLTDYDYLFGQASWLTDRYNGYRERDVLTAGYGRQFLNGPVHSFRFEFGPGVRYDKYTDNASETQPLGYASGAYAWQLTDNAKFTQGVSVFGAEDTTLNSESALNVAINEHFGLKVAYNVTWNSEPPESAPEHTDRRTTLSLGYSM" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 0 "G6929-MONOMER" "putative endoribonuclease YdiZ" ["YdiZ"] "MASGDLVRYVITVMLHEDTLTEINELNNYLTRDGFLLTMTDDEGNIHELGTNTFGLISTQSEEEIRELVSGLTQSATGKDPEITITTWEEWNSNRK" [] [] 0 [] {} 0 "G6930-MONOMER" "putative kinase YniA" ["YniA", "putative phosphotransferase/kinase"] "MWQAISRLLSEQLGEGEIELRNELPGGEVHAAWHLRYAGHDFFVKCDERELLPGFTAEADQLELLSRSKTVTVPKVWAVGADRDYSFLVMDYLPPRPLDAHSAFILGQQIARLHQWSDQPQFGLDFDNALSTTPQPNTWQRRWSTFFAEQRIGWQLELAAEKGIAFGNIDAIVEHIQQRLASHQPQPSLLHGDLWSGNCALGPDGPYIFDPACYWGDRECDLAMLPLHTEQPPQIYDGYQSVSPLPADFLERQPVYQLYTLLNRARLFGGQHLVIAQQSLDRLLAA" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6931-MONOMER" "uncharacterized protein YniB" ["YniB"] "MTYQQAGRIAVLKRILGWVIFIPALISTLISLLKFMNTRQENKEGINAVMLDFTHVMIDMMQANTPFLNLFWYNSPTPNFNGGVNVMFWVIFILIFVGLALQDSGARMSRQARFLREGVEDQLILEKAKGEEGLTREQIESRIVVPHHTIFLQFFSLYILPVICIAAGYVFFSLLGFI" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6931-MONOMER" "uncharacterized protein YniB" ["YniB"] "MTYQQAGRIAVLKRILGWVIFIPALISTLISLLKFMNTRQENKEGINAVMLDFTHVMIDMMQANTPFLNLFWYNSPTPNFNGGVNVMFWVIFILIFVGLALQDSGARMSRQARFLREGVEDQLILEKAKGEEGLTREQIESRIVVPHHTIFLQFFSLYILPVICIAAGYVFFSLLGFI" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6932-MONOMER" "hexitol phosphatase B" ["HxpB", "YniC", "2-deoxyglucose-6-phosphate phosphatase", "HAD1"] "MSTPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVIARAISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLADVKLSSLTELTAKDLLG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 -"G6933-MONOMER" "inner membrane protein YdjM" ["YdjM", "putative inner membrane protein regulated by LexA"] "MTAEGHLLFSIACAVFAKNAELTPVLAQGDWWHIVPSAILTCLLPDIDHPKSFLGQRLKWISKPIARAFGHRGFTHSLLAVFALLATFYLKVPEGWFIPADALQGMVLGYLSHILADMLTPAGVPLLWPCRWRFRLPILVPQKGNQLERFICMALFVWSVWMPHSLPENSAVRWSSQMINTLQIQFHRLIKHQVEY" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6933-MONOMER" "inner membrane protein YdjM" ["YdjM", "putative inner membrane protein regulated by LexA"] "MTAEGHLLFSIACAVFAKNAELTPVLAQGDWWHIVPSAILTCLLPDIDHPKSFLGQRLKWISKPIARAFGHRGFTHSLLAVFALLATFYLKVPEGWFIPADALQGMVLGYLSHILADMLTPAGVPLLWPCRWRFRLPILVPQKGNQLERFICMALFVWSVWMPHSLPENSAVRWSSQMINTLQIQFHRLIKHQVEY" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6934-MONOMER" "cystine/sulfocysteine:cation symporter" ["TcyP", "YdjN"] "MNFPLIANIVVFVVLLFALAQTRHKQWSLAKKVLVGLVMGVVFGLALHTIYGSDSQVLKDSVQWFNIVGNGYVQLLQMIVMPLVFASILSAVARLHNASQLGKISFLTIGTLLFTTLIAALVGVLVTNLFGLTAEGLVQGGAETARLNAIESNYVGKVSDLSVPQLVLSFIPKNPFADLTGANPTSIISVVIFAAFLGVAALKLLKDDAPKGERVLAAIDTLQSWVMKLVRLVMQLTPYGVLALMTKVVAGSNLQDIIKLGSFVVASYLGLLIMFAVHGILLGINGVSPLKYFRKVWPVLTFAFTSRSSAASIPLNVEAQTRRLGVPESIASFAASFGATIGQNGCAGLYPAMLAVMVAPTVGINPLDPMWIATLVGIVTVSSAGVAGVGGGATFAALIVLPAMGLPVTLVALLISVEPLIDMGRTALNVSGSMTAGTLTSQWLKQTDKAILDSEDDAELAHH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6935-MONOMER" "protein YdjO" ["YdjO"] "MFSTNLIQSNYGDLNIKSLAFDSFKERLQSTMTALTFFISTGQCDCDEIAESNFNYMIAYMSNINYDASKPGAPALSFDTYLQDNVKYRVIINNLYGSEIRIRGINKDFIGMDVTSVFRPEKMTNLISIKNRLVIHYLRTIYYEQNYIHPVGSIFAAIQKNESLLKFPSIISMLNINLLFNPLNLPGMGSGVLEDIMSIPDSSLRKRLGYEVLSFSLQAHSLSQECIDKLDIFFADDLFKYESVCIAAMEHLKSKATAPIQNGPLPA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6936-MONOMER" "cell division modulator" ["YdjP", "CedA"] "MKKPLRQQNRQIISYVPRTEPAPPEHAIKMDSFRDVWMLRGKYVAFVLMGESFLRSPAFTVPESAQRWANQIRQEGEVTE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6937-MONOMER" "excinuclease Cho" ["YdjQ", "Cho", "sosD", "endonuclease of nucleotide excision repair"] "MVRRLTSPRLEFEAAAIYEYPEHLRSFLNDLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEKRVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWPWQGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGYKILCKPLLSGNYEITELDPANDQRAS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6938-MONOMER" "HutD family protein Ves" ["Ves", "YdjR"] "MEYFDMRKMSVNLWRNAAGETREICTFPPAKRDFYWRASIASIAANGEFSLFPGMERIVTLLEGGEMLLESADRFNHTLKPFQPFAFAADQVVKAKLTAGQMSMDFNIMTRLDVCKAKVRIAERTFTTFGSRGGVVFVINGAWQLGDKLLTTDQGACWFDGRHTLRLLQPQGKLLFSEINWLAGHSPDQVQ" [] [] 0 [] {} 0 "G6939-MONOMER" "ATP-independent periplasmic chaperone" ["Spy"] "MRKLTALFVASTLALGAANLAHAADTTTAAPADAKPMMHHKGKFGPHQDMMFKDLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIIASDTFDKVKAEAQIAKMEEQRKANMLAHMETQNKIYNILTPEQKKQFNANFEKRLTERPAAKGKMPATAE" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 -"G6945-MONOMER" "DedA family protein YdjX" ["YdjX"] "MNAERKFLFACLIFALVIYAIHAFGLFDLLTDLPHLQTLIRQSGFFGYSLYILLFIIATLLLLPGSILVIAGGIVFGPLLGTLLSLIAATLASSCSFLLARWLGRDLLLKYVGHSNTFQAIEKGIARNGIDFLILTRLIPLFPYNIQNYAYGLTTIAFWPYTLISALTTLPGIVIYTVMASDLANEGITLRFILQLCLAGLALFILVQLAKLYARHKHVDLSASRRSPLTHPKNEG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6945-MONOMER" "DedA family protein YdjX" ["YdjX"] "MNAERKFLFACLIFALVIYAIHAFGLFDLLTDLPHLQTLIRQSGFFGYSLYILLFIIATLLLLPGSILVIAGGIVFGPLLGTLLSLIAATLASSCSFLLARWLGRDLLLKYVGHSNTFQAIEKGIARNGIDFLILTRLIPLFPYNIQNYAYGLTTIAFWPYTLISALTTLPGIVIYTVMASDLANEGITLRFILQLCLAGLALFILVQLAKLYARHKHVDLSASRRSPLTHPKNEG" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6946-MONOMER" "4Fe-4S ferredoxin-type domain-containing protein YdjY" ["YdjY"] "MLQHYSVSWKKGLAALCLLAVAGLSGCDQQENAAAKVEYDGLSNSQPLRVDANNHTVTMLVQINGRFLTDDTRHGIVFKDGSNGHKSLFMGYATPKAFYEALKEAGGTPGENMTMDNKETTHVTGSKLDISVNWQGAAKAYSFDEVIVDSNGKKLDMRFGGNLTAAEEKKTGCLVCLDSCPVGIVSNATYTYGAVEKRGEVKFKGNASVLPADNTLATVTFKIAE" ["CCO-CYTOSOL"] [] 0 [] {} 0 "G6947-MONOMER" "DedA family protein YdjZ" ["YdjZ"] "MMMMQSRKIWYYRITLIILLFAMLLAWALLPGVHEFINRSVAAFAAVDQQGIERFIQSYGALAAVVSFLLMILQAIAAPLPAFLITFANASLFGAFWGGLLSWTSSMAGAALCFFIARVMGREVVEKLTGKTVLDSMDGFFTRYGKHTILVCRLLPFVPFDPISYAAGLTSIRFRSFFIATGLGQLPATIVYSWAGSMLTGGTFWFVTGLFILFALTVVIFMAKKIWLERQKRNA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6948-MONOMER" "AhpD-like domain-containing protein YnjA" ["YnjA"] "MGLPPLSKIPLILRPQAWLHRRHYGEVLSPIRWWGRIPFIFYLVSMFVGWLERKRSPLDPVVRSLVSARIAQMCLCEFCVDITSMKVAERTGSSDKLLAVADWRQSPLFSDEERLALEYAEAASVTPPTVDDALRTRLAAHFDAQALTELTALIGLQNLSARFNSAMDIPAQGLCRIPEKRS" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -2468,7 +2468,7 @@ "G6953-MONOMER" "CDP-alcohol phosphatidyltransferase domain-containing protein YnjF" ["YnjF"] "MLDRHLHPRIKPLLHQCVRVLDKPGITPDGLTLVGFAIGVLALPFLALGWYLAALVVILLNRLLDGLDGALARRRELTDAGGFLDISLDFLFYALVPFGFILAAPEQNALAGGWLLFAFIGTGSSFLAFAALAAKHQIDNPGYAHKSFYYLGGLTEGTETILLFVLGCLFPAWFAWFAWIFGALCWMTTFTRVWSGYLTLKSLQRQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6954-MONOMER" "5-hydroxy-CTP diphosphatase" ["YnjG", "NudG", "Orf135"] "MKMIEVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQREVSGRIIHLHAWHVPDFHGTLQAHEHQALVWCSPEEALQYPLAPADIPLLEAFMALRAARPAD" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6955-MONOMER" "DUF1496 domain-containing protein YnjH" ["YnjH"] "MSRALFAVVLAFPLIALANPHYRPDVEVNVPPEVFSSGGQSAQPCTQCCVYQDQNYSEGAVIKAEGILLQCQRDDKTLSTNPLVWRRVKP" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6956-MONOMER" "DUF1266 domain-containing protein YnjI" ["YnjI"] "MKKVLLQNHPGSEKYSFNGWEIFNSNFERMIKENKAMLLCKWGFYLTCVVAVMFVFAAITSNGLNERGLITAGCSFLYLLIMMGLIVRAGFKAKKEQLHYYQAKGIEPLSIEKLQALQLIAPYRFYHKQWSETLEFWPRKPEPGKDTFQYHVLPFDSIDIISKRRESLEDQWGIEDSESYCALMEHFLSGDHGANTFKANMEEAPEQVIALLNKFAVFPSDYISDCANHSSGKSSAKLIWAAELSWMISISSTAFQNGTIEEELAWHYIMLASRKAHELFESEEDYQKNSQMGFLYWHICCYRRKLTDAELEACYRYDKQFWEHYSKKCRWPIRNVPWGASSVKYS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6956-MONOMER" "DUF1266 domain-containing protein YnjI" ["YnjI"] "MKKVLLQNHPGSEKYSFNGWEIFNSNFERMIKENKAMLLCKWGFYLTCVVAVMFVFAAITSNGLNERGLITAGCSFLYLLIMMGLIVRAGFKAKKEQLHYYQAKGIEPLSIEKLQALQLIAPYRFYHKQWSETLEFWPRKPEPGKDTFQYHVLPFDSIDIISKRRESLEDQWGIEDSESYCALMEHFLSGDHGANTFKANMEEAPEQVIALLNKFAVFPSDYISDCANHSSGKSSAKLIWAAELSWMISISSTAFQNGTIEEELAWHYIMLASRKAHELFESEEDYQKNSQMGFLYWHICCYRRKLTDAELEACYRYDKQFWEHYSKKCRWPIRNVPWGASSVKYS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6957-MONOMER" "putative DNA-binding transcriptional regulator YdjF" ["YdjF"] "MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAMLTENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLLTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEIIRRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWIAFCKDNNIQLVW" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6958-MONOMER" "NADH-dependent methylglyoxal reductase" ["YdjG"] "MKKIPLGTTDITLSRMGLGTWAIGGGPAWNGDLDRQICIDTILEAHRCGINLIDTAPGYNFGNSEVIVGQALKKLPREQVVVETKCGIVWERKGSLFNKVGDRQLYKNLSPESIREEVAASLQRLGIDYIDIYMTHWQSVPPFFTPIAETVAVLNELKSEGKIRAIGAANVDADHIREYLQYGELDIIQAKYSILDRAMENELLPLCRDNGIVVQVYSPLEQGLLTGTITRDYVPGGARANKVWFQRENMLKVIDMLEQWQPLCARYQCTIPTLALAWILKQSDLISILSGATAPEQVRENVAALNINLSDADATLMREMAEALER" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6959-MONOMER" "L-glycero-L-galacto-octuluronate kinase" ["YdjH"] "MDNLDVICIGAAIVDIPLQPVSKNIFDVDSYPLERIAMTTGGDAINEATIISRLGHRTALMSRIGKDAAGQFILDHCRKENIDIQSLKQDVSIDTSINVGLVTEDGERTFVTNRNGSLWKLNIDDVDFARFSQAKLLSLASIFNSPLLDGKALTEIFTQAKARQMIICADMIKPRLNETLDDICEALSYVDYLFPNFAEAKLLTGKETLDEIADCFLACGVKTVVIKTGKDGCFIKRGDMTMKVPAVAGITAIDTIGAGDNFASGFIAALLEGKNLRECARFANATAAISVLSVGATTGVKNRKLVEQLLEEYEG" [] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -2478,14 +2478,14 @@ "G6964-MONOMER" "DUF1315 domain-containing protein YeaC" ["YeaC"] "MNLDDIINSMMPEVYQRLSTAVELGKWPDGVALTEEQKENCLQLVMLWQARHNIEAQHMTIDTNGQMVMKSKQQLKEDFGISAKPIAMFK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6966-MONOMER" "putative aldose 1-epimerase YeaD" ["YzzQ", "YeaD"] "MIKKIFALPVIEQISPVLSRRKLDELDLIVVDHPQVKASFALQGAHLLSWKPAGEEEVLWLSNNTPFKNGVAIRGGVPVCWPWFGPAAQQGLPAHGFARNLPWTLKSHHEDADGVALTFELTQSEETKKFWPHDFTLLAHFRVGKTCEIDLESHGEFETTSALHTYFNVGDIAKVSVSGLGDRFIDKVNDAKENVLTDGIQTFPDRTDRVYLNPQDCSVINDEALNRIIAVGHQHHLNVVGWNPGPALSISMGDMPDDGYKTFVCVETAYASETQKVTKEKPAHLAQSIRVAKR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6967-MONOMER" "methylglyoxal reductase YeaE" ["YeaE"] "MQQKMIQFSGDVSLPAVGQGTWYMGEDASQRKTEVAALRAGIELGLTLIDTAEMYADGGAEKVVGEALTGLREKVFLVSKVYPWNAGGQKAINACEASLRRLNTDYLDLYLLHWSGSFAFEETVAAMEKLIAQGKIRRWGVSNLDYADMQELWQLPGGNQCATNQVLYHLGSRGIEYDLLPWCQQQQMPVMAYSPLAQAGRLRNGLLKNAVVNEIAHAHNISAAQVLLAWVISHQGVMAIPKAATIAHVQQNAAVLEVELSSAELAMLDKAYPAPKGKTALDMV" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6968-MONOMER" "MltA-interacting protein" ["YeaF", "MipA", "scaffolding protein that interacts with murein polymerase and murein hydrolase"] "MTKLKLLALGVLIATSAGVAHAEGKFSLGAGVGVVEHPYKDYDTDVYPVPVINYEGDNFWFRGLGGGYYLWNDATDKLSITAYWSPLYFKAKDSGDHQMRHLDDRKSTMMAGLSYAHFTQYGYLRTTLAGDTLDNSNGIVWDMAWLYRYTNGGLTVTPGIGVQWNSENQNEYYYGVSRKESARSGLRGYNPNDSWSPYLELSASYNFLGDWSVYGTARYTRLSDEVTDSPMVDKSWTGLISTGITYKF" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"G6968-MONOMER" "MltA-interacting protein" ["YeaF", "MipA", "scaffolding protein that interacts with murein polymerase and murein hydrolase"] "MTKLKLLALGVLIATSAGVAHAEGKFSLGAGVGVVEHPYKDYDTDVYPVPVINYEGDNFWFRGLGGGYYLWNDATDKLSITAYWSPLYFKAKDSGDHQMRHLDDRKSTMMAGLSYAHFTQYGYLRTTLAGDTLDNSNGIVWDMAWLYRYTNGGLTVTPGIGVQWNSENQNEYYYGVSRKESARSGLRGYNPNDSWSPYLELSASYNFLGDWSVYGTARYTRLSDEVTDSPMVDKSWTGLISTGITYKF" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 0 "G6969-MONOMER" "protein kinase YeaG" ["YeaG"] "MNIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGISNPKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVISFNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCEWYLRVRKSS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6970-MONOMER" "DUF444 domain-containing protein YeaH" ["YeaH"] "MTWFIDRRLNGKNKSMVNRQRFLRRYKAQIKQSISEAINKRSVTDVDSGESVSIPTEDISEPMFHQGRGGLRHRVHPGNDHFVQNDRIERPQGGGGGSGSGQGQASQDGEGQDEFVFQISKDEYLDLLFEDLALPNLKQNQQRQLTEYKTHRAGYTANGVPANISVVRSLQNSLARRTAMTAGKRRELHALEENLAIISNSEPAQLLEEERLRKEIAELRAKIERVPFIDTFDLRYKNYEKRPDPSSQAVMFCLMDVSGSMDQSTKDMAKRFYILLYLFLSRTYKNVEVVYIRHHTQAKEVDEHEFFYSQETGGTIVSSALKLMDEVVKERYNPAQWNIYAAQASDGDNWADDSPLCHEILAKKLLPVVRYYSYIEITRRAHQTLWREYEHLQSTFDNFAMQHIRDQDDIYPVFRELFHKQNATAKG" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6971-MONOMER" "putative c-di-GMP binding protein CdgI" ["CdgI", "YeaI"] "MIQSTRISMGLFFKYFLSLTKIDPGQNYISLPSIKSSTHIALLFMVSMGTQKLKAQSFFIFSLLLTLILFCITTLYNENTNVKLIPQMNYLMVVVALFFLNAVIFLFMLMKYFTNKQILPTLILSLAFLSGLIYLVETIVIIHKPINGSTLIQTKSNDVSIFYIFRQLSFICLTSLALFCYGKDNILDNNKKKTGILLLALIPFLVFPLLAHNLSSYNADYSLYVVDYCPDNHTATWGINYTKILVCLWAFLLFFIIMRTRLASELWPLIALLCLASLCCNLLLLTLDEYNYTIWYISRGIEVSSKLFVVSFLIYNIFQELQLSSKLAVHDVLTNIYNRRYFFNSVESLLSRPVVKDFCVMLVDINQFKRINAQWGHRVGDKVLVSIVDIIQQSIRPDDILARLEGEVFGLLFTELNSAQAKIIAERMRKNVELLTGFSNRYDVPEQMTISIGTVFSTGDTRNISLVMTEADKALREAKSEGGNKVIIHHI" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 0 -"G6972-MONOMER" "diguanylate cyclase DgcJ" ["DgcJ", "YeaJ"] "MKLHHRMLRHFIAASVIVLTSSFLIFELVASDRAMSAYLRYIVQKADSSFLYDKYQNQSIAAHVMRALAAEQSEVSPEQRRAICEAFESANNTHGLNLTAHKYPGLRGTLQTASTDCDTIVEAAALLPAFDQAVEGNRHQDDYGSGLGMAEEKFHYYLDLNDRYVYFYEPVNVEYFAMNNWSFLQSGSIGIDRKDIEKVFTGRTVLSSIYQDQRTKQNVMSLLTPVYVAGQLKGIVLLDINKNNLRNIFYTHDRPLLWRFLNVTLTDTDSGRDIIINQSEDNLFQYVSYVHDLPGGIRVSLSIDILYFITSSWKSVLFWILTALILLNMVRMHFRLYQNVSRENISDAMTGLYNRKILTPELEQRLQKLVQSGSSVMFIAIDMDKLKQINDTLGHQEGDLAITLLAQAIKQSIRKSDYAIRLGGDEFCIILVDSTPQIAAQLPERIEKRLQHIAPQKEIGFSSGIYAMKENDTLHDAYKASDERLYVNKQNKNSRS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 0 +"G6971-MONOMER" "putative c-di-GMP binding protein CdgI" ["CdgI", "YeaI"] "MIQSTRISMGLFFKYFLSLTKIDPGQNYISLPSIKSSTHIALLFMVSMGTQKLKAQSFFIFSLLLTLILFCITTLYNENTNVKLIPQMNYLMVVVALFFLNAVIFLFMLMKYFTNKQILPTLILSLAFLSGLIYLVETIVIIHKPINGSTLIQTKSNDVSIFYIFRQLSFICLTSLALFCYGKDNILDNNKKKTGILLLALIPFLVFPLLAHNLSSYNADYSLYVVDYCPDNHTATWGINYTKILVCLWAFLLFFIIMRTRLASELWPLIALLCLASLCCNLLLLTLDEYNYTIWYISRGIEVSSKLFVVSFLIYNIFQELQLSSKLAVHDVLTNIYNRRYFFNSVESLLSRPVVKDFCVMLVDINQFKRINAQWGHRVGDKVLVSIVDIIQQSIRPDDILARLEGEVFGLLFTELNSAQAKIIAERMRKNVELLTGFSNRYDVPEQMTISIGTVFSTGDTRNISLVMTEADKALREAKSEGGNKVIIHHI" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 0 +"G6972-MONOMER" "diguanylate cyclase DgcJ" ["DgcJ", "YeaJ"] "MKLHHRMLRHFIAASVIVLTSSFLIFELVASDRAMSAYLRYIVQKADSSFLYDKYQNQSIAAHVMRALAAEQSEVSPEQRRAICEAFESANNTHGLNLTAHKYPGLRGTLQTASTDCDTIVEAAALLPAFDQAVEGNRHQDDYGSGLGMAEEKFHYYLDLNDRYVYFYEPVNVEYFAMNNWSFLQSGSIGIDRKDIEKVFTGRTVLSSIYQDQRTKQNVMSLLTPVYVAGQLKGIVLLDINKNNLRNIFYTHDRPLLWRFLNVTLTDTDSGRDIIINQSEDNLFQYVSYVHDLPGGIRVSLSIDILYFITSSWKSVLFWILTALILLNMVRMHFRLYQNVSRENISDAMTGLYNRKILTPELEQRLQKLVQSGSSVMFIAIDMDKLKQINDTLGHQEGDLAITLLAQAIKQSIRKSDYAIRLGGDEFCIILVDSTPQIAAQLPERIEKRLQHIAPQKEIGFSSGIYAMKENDTLHDAYKASDERLYVNKQNKNSRS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 0 "G6973-MONOMER" "mischarged aminoacyl-tRNA deacylase" ["YeaK", "ProXp-y", "ProXp-ST1"] "MTEMAKGSVTHQRLIALLSQEGADFRVVTHEAVGKCEAVSEIRGTALGQGAKALVCKVKGNGVNQHVLAILAADQQADLSQLASHIGGLRASLASPAEVDELTGCVFGAIPPFSFHPKLKLVADPLLFERFDEIAFNAGMLDKSVILKTADYLRIAQPELVNFRRTA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6974-MONOMER" "protein YoaI" ["YoaI"] "MNDQMFVETLIITSSFFAIAVVLVLSVLLIERTG" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 -"G6975-MONOMER" "DUF441 domain-containing inner membrane protein YeaL" ["YeaL"] "MFDVTLLILLGLAALGFISHNTTVAVSILVLIIVRVTPLSTFFPWIEKQGLSIGIIILTIGVMAPIASGTLPPSTLIHSFLNWKSLVAIAVGVIVSWLGGRGVTLMGSQPQLVAGLLVGTVLGVALFRGVPVGPLIAAGLVSLIVGKQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6975-MONOMER" "DUF441 domain-containing inner membrane protein YeaL" ["YeaL"] "MFDVTLLILLGLAALGFISHNTTVAVSILVLIIVRVTPLSTFFPWIEKQGLSIGIIILTIGVMAPIASGTLPPSTLIHSFLNWKSLVAIAVGVIVSWLGGRGVTLMGSQPQLVAGLLVGTVLGVALFRGVPVGPLIAAGLVSLIVGKQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G6976-MONOMER" "DNA-binding transcriptional repressor NimR" ["NimR", "YeaM"] "MMHRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALWMVPPQYAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPTTCCTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHPKIRTMVEMMAKGPVEWGALGQWAGFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAFITMFKKGLGQTPGRYIARLTTVSPQSAKPDPRQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G6978-MONOMER" "DUF488 domain-containing protein YeaO" ["YeaO"] "MNIQCKRVYDPAEQSDGYRILVDRLWPRGIKKTDLALDEWDKEITPSTELRKAFHGEVVDYATFREQYLAELAQHEQEGKRLADIAKKQPLTLLYSAKNTTQNHALVLADWLRSL" [] [] 0 [] {} 0 "G6979-MONOMER" "DUF333 domain-containing lipoprotein YoaF" ["YoaF"] "MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQKGGTLIPVQTAQGVSNNCKLPGGETIDEWALWRRDHPAGEK" [] [] 0 [] {} 0 @@ -2498,30 +2498,30 @@ "G6986-MONOMER" "D-malate/3-isopropylmalate dehydrogenase (decarboxylating)" ["YeaU", "TtuC", "DmlA"] "MMKTMRIAAIPGDGIGKEVLPEGIRVLQAAAERWGFALSFEQMEWASCEYYSHHGKMMPDDWHEQLSRFDAIYFGAVGWPDTVPDHISLWGSLLKFRREFDQYVNLRPVRLFPGVPCPLAGKQPGDIDFYVVRENTEGEYSSLGGRVNEGTEHEVVIQESVFTRRGVDRILRYAFELAQSRPRKTLTSATKSNGLAISMPYWDERVEAMAENYPEIRWDKQHIDILCARFVMQPERFDVVVASNLFGDILSDLGPACTGTIGIAPSANLNPERTFPSLFEPVHGSAPDIYGKNIANPIATIWAGAMMLDFLGNGDERFQQAHNGILAAIEEVIAHGPKTPDMKGNATTPQVADAICKIILR" [] ["CCO-CYTOSOL"] 0 [] {"MN+2": 1} 0 "G6988-MONOMER" "carnitine monooxygenase subunit YeaW" ["YeaW", "2Fe-2S cluster-containing protein"] "MSNLSPDFVLPENFCANPQEAWTIPARFYTDQNAFEHEKENVFAKSWICVAHSSELANANDYVTREIIGESIVLVRGRDKVLRAFYNVCPHRGHQLLSGEGKAKNVITCPYHAWAFKLDGNLAHARNCENVANFDSDKAQLVPVRLEEYAGFVFINMDPNATSVEDQLPGLGAKVLEACPEVHDLKLAARFTTRTPANWKNIVDNYLECYHCGPAHPGFSDSVQVDRYWHTMHGNWTLQYGFAKPSEQSFKFEEGTDAAFHGFWLWPCTMLNVTPIKGMMTVIYEFPVDSETTLQNYDIYFTNEELTDEQKSLIEWYRDVFRPEDLRLVESVQKGLKSRGYRGQGRIMADSSGSGISEHGIAHFHNLLAQVFKD" [] ["CCO-CYTOSOL"] 0 [] {"CPD-6": 1, "FE+2": 1} 1 "G6989-MONOMER" "carnitine monooxygenase subunit YeaX" ["YeaX"] "MSDYQMFEVQVSQVEPLTEQVKRFTLVATDGKPLPAFTGGSHVIVQMSDGDNQYSNAYSLLSSPHDTSCYQIAVRLEENSRGGSRFLHQQVKVGDRLTISTPNNLFALIPSARKHLFIAGGIGITPFLSHMAELQHSDVDWQLHYCSRNPESCAFRDELVQHPQAEKVHLHHSSTGTRLELARLLADIEPGTHVYTCGPEALIEAVRSEAARLDIAADTLHFEQFAIEDKTGDAFTLVLARSGKEFVVPEEMTILQVIENNKAAKVECLCREGVCGTCETAILEGEADHRDQYFSDEERASQQSMLICCSRAKGKRLVLDL" [] ["CCO-CYTOSOL"] 0 [] {"CPD-6": 1} 1 -"G6990-MONOMER" "Slp family lipoprotein YeaY" ["YeaY"] "MAVQKNVIKGILAGTFALMLSGCVTVPDAIKGSSPTPQQDLVRVMSAPQLYVGQEARFGGKVVAVQNQQGKTRLEIATVPLDSGARPTLGEPSRGRIYADVNGFLDPVDFRGQLVTVVGPITGAVDGKIGNTPYKFMVMQVTGYKRWHLTQQVIMPPQPIDPWFYGGRGWPYGYGGWGWYNPGPARVQTVVTE" [] ["CCO-OUTER-MEM", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"G6990-MONOMER" "Slp family lipoprotein YeaY" ["YeaY"] "MAVQKNVIKGILAGTFALMLSGCVTVPDAIKGSSPTPQQDLVRVMSAPQLYVGQEARFGGKVVAVQNQQGKTRLEIATVPLDSGARPTLGEPSRGRIYADVNGFLDPVDFRGQLVTVVGPITGAVDGKIGNTPYKFMVMQVTGYKRWHLTQQVIMPPQPIDPWFYGGRGWPYGYGGWGWYNPGPARVQTVVTE" [] ["CCO-OUTER-MEM", "CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6991-MONOMER" "N6-L-threonylcarbamoyladenine synthase, TsaB subunit" ["TsaB", "YeaZ", "tRNA adenosine(37) threonylcarbamoyltransferase complex, dimerization subunit"] "MRILAIDTATEACSVALWNDGTVNAHFELCPREHTQRILPMVQDILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGAELPMIGVSTLMTMAQGAWRKNGATRVLAAIDARMGEVYWAEYQRDENGIWHGEETEAVLKPEIVHERMQQLSGEWVTVGTGWQAWPDLGKESGLVLRDGEVLLPAAEDMLPIACQMFAEGKTVAVEHAEPVYLRNNVAWKKLPGKE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "G6992-MONOMER" "ATP-dependent DNA helicase YoaA" ["YoaA"] "MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 0 "G6993-MONOMER" "RutC family protein YoaB" ["YoaB"] "MTIVRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLAQIDAVLEKQGSNKSSILDATIFLADKNDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNPKYKVEIKIVAAV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G6994-MONOMER" "DUF1889 domain-containing protein YoaC" ["YoaC"] "MPAVIDKALDFIGAMDVSAPTPSSMNESTAKGIFKYLKELGVPASAADITARADQEGWNPGFTEKMVGWAKKMETGERSVIKNPEYFSTYMQEELKALV" [] [] 0 [] {} 0 "G6995-MONOMER" "UFP0181 family protein YoaH" ["YoaH"] "MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRANHSGERIVARFEDEDE" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G6996-MONOMER" "putative cyclic di-GMP phosphodiesterase PdeD" ["PdeD", "YoaD"] "MQKAQRIIKTYRRNRMIVCTICALVTLASTLSVRFISQRNLNQQRVVQFANHAVEELDKVLLPLQAGSEVLLPLIGLPCSVAHLPLRKQAAKLQTVRSIGLVQDGTLYCSSIFGYRNVPVVDILAELPAPQPLLRLTIDRALIKGSPVLIQWTPAAGSSNAGVMEMINIDLLTAMLLEPQLPQISSASLTVDKRHLLYGNGLVDSLPQPEDNENYQVSSQRFPFTINVNGPGATALAWHYLPTQLPLAVLLSLLVGYIAWLATAYRMSFSREINLGLAQHEFELFCQPLLNARSQQCIGVEILLRWNNPRQGWISPDVFIPIAEEHHLIVPLTRYVMAETIRQRHVFPMSSQFHVGINVAPSHFRRGVLIKDLNQYWFSAHPIQQLILEITERDALLDVDYRIARELHRKNVKLAIDDFGTGNSSFSWLETLRPDVLKIDKSFTAAIGSDAVNSTVTDIIIALGQRLNIELVAEGVETQEQAKYLRRHGVHILQGYLYAQPMPLRDFPKWLAGSQPPPARHNGHITPIMPLR" [] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6996-MONOMER" "putative cyclic di-GMP phosphodiesterase PdeD" ["PdeD", "YoaD"] "MQKAQRIIKTYRRNRMIVCTICALVTLASTLSVRFISQRNLNQQRVVQFANHAVEELDKVLLPLQAGSEVLLPLIGLPCSVAHLPLRKQAAKLQTVRSIGLVQDGTLYCSSIFGYRNVPVVDILAELPAPQPLLRLTIDRALIKGSPVLIQWTPAAGSSNAGVMEMINIDLLTAMLLEPQLPQISSASLTVDKRHLLYGNGLVDSLPQPEDNENYQVSSQRFPFTINVNGPGATALAWHYLPTQLPLAVLLSLLVGYIAWLATAYRMSFSREINLGLAQHEFELFCQPLLNARSQQCIGVEILLRWNNPRQGWISPDVFIPIAEEHHLIVPLTRYVMAETIRQRHVFPMSSQFHVGINVAPSHFRRGVLIKDLNQYWFSAHPIQQLILEITERDALLDVDYRIARELHRKNVKLAIDDFGTGNSSFSWLETLRPDVLKIDKSFTAAIGSDAVNSTVTDIIIALGQRLNIELVAEGVETQEQAKYLRRHGVHILQGYLYAQPMPLRDFPKWLAGSQPPPARHNGHITPIMPLR" [] ["CCO-PERI-BAC", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G6997-MONOMER" "TerC family inner membrane protein YoaE" ["YoaE"] "MEFLMDPSIWAGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRDKARLLGLSLALIMRLGLLSLISWMVTLTKPLFTVMDFSFSGRDLIMLFGGIFLLFKATTELHERLENRDHDSGHGKGYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAAVVIAMAVMLLASKPLTRFVNQHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAIGFSIIIEVFNQIARRNFIRHQSTLPLRARTADAILRLMGGKRQANVQHDADNPMPMPIPEGAFAEEERYMINGVLTLASRSLRGIMTPRGEISWVDANLGVDEIREQLLSSPHSLFPVCRGELDEIIGIVRAKELLVALEEGVDVAAIASASPAIIVPETLDPINLLGVLRRARGSFVIVTNEFGVVQGLVTPLDVLEAIAGEFPDADETPEIITDGDGWLVKGGTDLHALQQALDVEHLADDDDIATVAGLVISANGHIPRVGDVIDVGPLHITIIEANDYRVDLVRIVKEQPAHDEDE" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6998-MONOMER" "DUF986 domain-containing inner membrane protein YobD" ["YobD"] "MTITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGRIDSVIFVGLIVILIYNNVTNHGALITTWLLSALALMGFYIFWIRVPKIIFKQKGFFFANVWIEYSRIKAMNLSEDGVLVMQLEQRRLLIRVRNIDDLEKIYKLLVSTQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G6999-MONOMER" null ["MntP", "YebN"] "MNITATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFGAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHGFWLLVTTAIATSLDAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQILWTHFHG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6998-MONOMER" "DUF986 domain-containing inner membrane protein YobD" ["YobD"] "MTITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGRIDSVIFVGLIVILIYNNVTNHGALITTWLLSALALMGFYIFWIRVPKIIFKQKGFFFANVWIEYSRIKAMNLSEDGVLVMQLEQRRLLIRVRNIDDLEKIYKLLVSTQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G6999-MONOMER" null ["MntP", "YebN"] "MNITATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFGAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHGFWLLVTTAIATSLDAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQILWTHFHG" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7000-MONOMER" "DUF2527 domain-containing protein YobF" ["YobF", "small protein involved in stress responses"] "MCGIFSKEVLSKHVDVEYRFSAEPYIGASCSNVSVLSMLCLRAKKTI" [] ["CCO-MEMBRANE"] 0 [] {} 0 -"G7001-MONOMER" "uncharacterized protein YebO" ["YebO"] "MNEVVNSGVMNIASLVVSVVVLLIGLILWFFINRASSRTNEQIELLEALLDQQKRQNALLRRLCEANEPEKADKKTVESQKSVEDEDIIRLVAER" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 -"G7002-MONOMER" "PhoQ kinase inhibitor" ["YobG", "MgrB"] "MKKFRWVVLVVVVLACLLLWAQVFNMMCDQDVQFFSGICAINQFIPW" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7001-MONOMER" "uncharacterized protein YebO" ["YebO"] "MNEVVNSGVMNIASLVVSVVVLLIGLILWFFINRASSRTNEQIELLEALLDQQKRQNALLRRLCEANEPEKADKKTVESQKSVEDEDIIRLVAER" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7002-MONOMER" "PhoQ kinase inhibitor" ["YobG", "MgrB"] "MKKFRWVVLVVVVLACLLLWAQVFNMMCDQDVQFFSGICAINQFIPW" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7003-MONOMER" "DNA-binding transcriptional repressor KdgR" ["YebP", "KdgR"] "MANADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLFELGARALQNVDLIRSADIQMRELSRLTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDRDEVKQILEGVEYKRSTERTITSTEALLPVLDQVREQGYGEDNEEQEEGLRCIAVPVFDRFGVVIAGLSISFPTLRFSEERLQEYVAMLHTAARKISAQMGYHDYPF" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G7005-MONOMER" "free methionine-(R)-sulfoxide reductase" ["MsrC", "YebR", "fRMsr"] "MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"G7006-MONOMER" "intermembrane transport protein LetA" ["LetA", "YebS"] "MALNTPQITPTKKITVRAIGEELPRGDYQRCPQCDMLFSLPEINSHQSAYCPRCQAKIRDGRDWSLTRLAAMAFTMLLLMPFAWGEPLLHIWLLGIRIDANVMQGIWQMTKQGDAITGSMVFFCVIGAPLILVTSIAYLWFGNRLGMNLRPVLLMLERLKEWVMLDIYLVGIGVASIKVQDYAHIQAGVGLFSFVALVILTTVTLSHLNVEELWERFYPQRPATRRDEKLRVCLGCHFTGYPDQRGRCPRCHIPLRLRRRHSLQKCWAALLASIVLLLPANLLPISIIYLNGGRQEDTILSGIMSLASSNIAVAGIVFIASILVPFTKVIVMFTLLLSIHFKCQQGLRTRILLLRMVTWIGRWSMLDLFVISLTMSLINRDQILAFTMGPAAFYFGAAVILTILAVEWLDSRLLWDAHESGNARFDD" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7007-MONOMER" "lipophilic envelope spanning tunnel" ["LetB", "YebT"] "MSQETPASTTEAQIKNKRRISPFWLLPFIALMIASWLIWDSYQDRGNTVTIDFMSADGIVPGRTPVRYQGVEVGTVQDISLSDDLRKIEVKVSIKSDMKDALREETQFWLVTPKASLAGVSGLDALVGGNYIGMMPGKGKEQDHFVALDTQPKYRLDNGDLMIHLQAPDLGSLNSGSLVYFRKIPVGKVYDYAINPNKQGVVIDVLIERRFTDLVKKGSRFWNVSGVDANVSISGAKVKLESLAALVNGAIAFDSPEESKPAEAEDTFGLYEDLAHSQRGVIIKLELPSGAGLTADSTPLMYQGLEVGQLTKLDLNPGGKVTGEMTVDPSVVTLLRENTRIELRNPKLSLSDANLSALLTGKTFELVPGDGEPRKEFVVVPGEKALLHEPDVLTLTLTAPESYGIDAGQPLILHGVQVGQVIDRKLTSKGVTFTVAIEPQHRELVKGDSKFVVNSRVDVKVGLDGVEFLGASASEWINGGIRILPGDKGEMKASYPLYANLEKALENSLSDLPTTTVSLSAETLPDVQAGSVVLYRKFEVGEVITVRPRANAFDIDLHIKPEYRNLLTSNSVFWAEGGAKVQLNGSGLTVQASPLSRALKGAISFDNLSGASASQRKGDKRILYASETAARAVGGQITLHAFDAGKLAVGMPIRYLGIDIGQIQTLDLITARNEVQAKAVLYPEYVQTFARGGTRFSVVTPQISAAGVEHLDTILQPYINVEPGRGNPRRDFELQEATITDSRYLDGLSIIVEAPEAGSLGIGTPVLFRGLEVGTVTGMTLGTLSDRVMIAMRISKRYQHLVRNNSVFWLASGYSLDFGLTGGVVKTGTFNQFIRGGIAFATPPGTPLAPKAQEGKHFLLQESEPKEWREWGTALPK" ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 +"G7006-MONOMER" "intermembrane transport protein LetA" ["LetA", "YebS"] "MALNTPQITPTKKITVRAIGEELPRGDYQRCPQCDMLFSLPEINSHQSAYCPRCQAKIRDGRDWSLTRLAAMAFTMLLLMPFAWGEPLLHIWLLGIRIDANVMQGIWQMTKQGDAITGSMVFFCVIGAPLILVTSIAYLWFGNRLGMNLRPVLLMLERLKEWVMLDIYLVGIGVASIKVQDYAHIQAGVGLFSFVALVILTTVTLSHLNVEELWERFYPQRPATRRDEKLRVCLGCHFTGYPDQRGRCPRCHIPLRLRRRHSLQKCWAALLASIVLLLPANLLPISIIYLNGGRQEDTILSGIMSLASSNIAVAGIVFIASILVPFTKVIVMFTLLLSIHFKCQQGLRTRILLLRMVTWIGRWSMLDLFVISLTMSLINRDQILAFTMGPAAFYFGAAVILTILAVEWLDSRLLWDAHESGNARFDD" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7007-MONOMER" "lipophilic envelope spanning tunnel" ["LetB", "YebT"] "MSQETPASTTEAQIKNKRRISPFWLLPFIALMIASWLIWDSYQDRGNTVTIDFMSADGIVPGRTPVRYQGVEVGTVQDISLSDDLRKIEVKVSIKSDMKDALREETQFWLVTPKASLAGVSGLDALVGGNYIGMMPGKGKEQDHFVALDTQPKYRLDNGDLMIHLQAPDLGSLNSGSLVYFRKIPVGKVYDYAINPNKQGVVIDVLIERRFTDLVKKGSRFWNVSGVDANVSISGAKVKLESLAALVNGAIAFDSPEESKPAEAEDTFGLYEDLAHSQRGVIIKLELPSGAGLTADSTPLMYQGLEVGQLTKLDLNPGGKVTGEMTVDPSVVTLLRENTRIELRNPKLSLSDANLSALLTGKTFELVPGDGEPRKEFVVVPGEKALLHEPDVLTLTLTAPESYGIDAGQPLILHGVQVGQVIDRKLTSKGVTFTVAIEPQHRELVKGDSKFVVNSRVDVKVGLDGVEFLGASASEWINGGIRILPGDKGEMKASYPLYANLEKALENSLSDLPTTTVSLSAETLPDVQAGSVVLYRKFEVGEVITVRPRANAFDIDLHIKPEYRNLLTSNSVFWAEGGAKVQLNGSGLTVQASPLSRALKGAISFDNLSGASASQRKGDKRILYASETAARAVGGQITLHAFDAGKLAVGMPIRYLGIDIGQIQTLDLITARNEVQAKAVLYPEYVQTFARGGTRFSVVTPQISAAGVEHLDTILQPYINVEPGRGNPRRDFELQEATITDSRYLDGLSIIVEAPEAGSLGIGTPVLFRGLEVGTVTGMTLGTLSDRVMIAMRISKRYQHLVRNNSVFWLASGYSLDFGLTGGVVKTGTFNQFIRGGIAFATPPGTPLAPKAQEGKHFLLQESEPKEWREWGTALPK" ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "G7008-MONOMER" "16S rRNA m5C1407 methyltransferase" ["YebU", "RsmF", "ribosomal RNA small subunit methyltransferase F"] "MAQHTVYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFPGANKALTEEGFLHVFPQIYDCEGFFVARLRKTQAIPALPAPKYKVGNFPFSPVKDREAGQIRQAATGVGLNWDENLRLWQRDKELWLFPVGIEALIGKVRFSRLGIKLAETHNKGYRWQHEAVIALASPDNMNAFELTPQEAEEWYRGRDVYPQAAPVADDVLVTFQHQPIGLAKRIGSRLKNSYPRELVRDGKLFTGNA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7009-MONOMER" "DUF1480 domain-containing protein YebV" ["YebV"] "MKTSVRIGAFEIDDGELHGESPGDRTLTIPCKSDPDLCMQLDAWDAETSIPALLNGEHSVLYRTRYDQQSDAWIMRLA" [] [] 0 [] {} 0 "G7010-MONOMER" "DUF1482 domain-containing protein YebW" ["YebW"] "MFALVLFVCYLDGGCEDIVVDVYNTEQQCLYSMSDQRIRQGGCFPIEDFIDGFWRPAQEYGDF" [] ["CCO-MEMBRANE"] 0 [] {} 0 "G7011-MONOMER" "phosphoprotein phosphatase 1" ["PrpA", "YebX", "PphA"] "MKQPAPVYQRIAGHQWRHIWLSGDIHGCLEQLRRKLWHCRFDPWRDLLISVGDVIDRGPQSLRCLQLLEQHWVCAVRGNHEQMAMDALASQQMSLWLMNGGDWFIALADNQQKQAKTALEKCQHLPFILEVHSRTGKHVIAHADYPDDVYEWQKDVDLHQVLWSRSRLGERQKGQGITGADHFWFGHTPLRHRVDIGNLHYIDTGAVFGGELTLVQLQ" [] ["CCO-CYTOSOL"] 0 [] {"MN+2": 2} 0 "G7012-MONOMER" "DUF2511 domain-containing protein YebY" ["YebY"] "MMKKSILAFLLLTSSAAALAAPQVITVSRFEVGKDKWAFNREEVMLTCRPGNALYVINPSTLVQYPLNDIAQKEVASGKTNAQPISVIQIDDPNNPGEKMSLAPFIERAEKLC" ["CCO-PERI-BAC"] [] 0 [] {} 0 "G7013-MONOMER" "CopD family protein" ["YebZ"] "MLAFTWIALRFIHFTSLMLVFGFAMYGAWLAPLTIRRLLAKRFLRLQQHAAVWSLISATAMLAVQGGLMGTGWTDVFSPNIWQAVLQTQFGGIWLWQIVLALVTLIVALMQPRNMPRLLFMLTTAQFILLAGVGHATLNEGVTAKIHQTNHAIHLICAAAWFGGLLPVLWCMQLIKGRWRHQAIQALMRFSWCGHFAVIGVLASGVLNALLITGFPPTLTTYWGQLLLLKAILVMIMVVIALANRYVLVPRMRQDEDRAAPWFVWMTKLEWAIGAVVLVIISLLATLEPF" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7014-MONOMER" "copper-binding protein" ["YobA"] "MASTARSLRYALAILTTSLVTPSVWAHAHLTHQYPAANAQVTAAPQAITLNFSEGVETGFSGAKITGPKNENIKTLPAKRNEQDQKQLIVPLADSLKPGTYTVDWHVVSVDGHKTKGHYTFSVK" ["CCO-PERI-BAC"] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {"CU+2": 1} 0 +"G7014-MONOMER" "copper-binding protein" ["YobA"] "MASTARSLRYALAILTTSLVTPSVWAHAHLTHQYPAANAQVTAAPQAITLNFSEGVETGFSGAKITGPKNENIKTLPAKRNEQDQKQLIVPLADSLKPGTYTVDWHVVSVDGHKTKGHYTFSVK" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {"CU+2": 1} 0 "G7015-MONOMER" "putative carbon-nitrogen hydrolase family protein YobB" ["YobB"] "MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPSLSLLGCDYSRRALPAPPDLSLLDPLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPWRKTPGIYHQSHGACLGRRSRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARRLQFFSHQYSIAVLMANARGNSALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "G7016-MONOMER" "exonuclease X" ["YobC", "ExoX"] "MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7019-MONOMER" "MAPEG family inner membrane protein YecN" ["YecN"] "MVSALYAVLSALLLMKFSFDVVRLRMQYRVAYGDGGFSELQSAIRIHGNAVEYIPIAIVLMLFMEMNGAETWMVHICGIVLLAGRLMHYYGFHHRLFRWRRSGMSATWCALLLMVLANLWYMPWELVFSLR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -2546,30 +2546,30 @@ "G7045-MONOMER" "protein DsrB" ["DsrB"] "MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNEAGHQDGIFVEKAE" [] [] 0 [] {} 0 "G7046-MONOMER" "stress-induced protein" ["YodD"] "MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQNDSEHVSVDGREYHTWRELADAFELDIHDFSVSEVNR" [] [] 0 [] {} 0 "G7048-MONOMER" "putative mannosyl-3-phosphoglycerate phosphatase" ["YedP", "HAD19"] "MFSIQQPLLVFSDLDGTLLDSHSYDWQPAAPWLTRLREANVPVILCSSKTSAEMLYLQKTLGLQGLPLIAENGAVIQLAEQWQEIDGFPRIISGISHGEISLVLNTLREKEHFKFTTFDDVDDATIAEWTGLSRSQAALTQLHEASVTLIWRDSDERMAQFTARLNELGLQFMQGARFWHVLDASAGKDQAANWIIATYQQLSGKRPTTLGLGDGPNDAPLLEVMDYAVIVKGLNREGVHLHDEDPARVWRTQREGPEGWREGLDHFFSAR" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 -"G7049-MONOMER" "diguanylate cyclase DgcQ" ["DgcQ", "YedQ"] "MQHETKMENQSWLKKLARRLGPGHVVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHLENVANALDKHLQYNVDKLIFLRNGMREALVAPLDFTSLRDAVTEFEQHRDEHAWKIELNRRRTLPVNGVSDALVSEGNLLSRENESLDNEITAALEVGYLLRLAHNSSSMVEQAMYVSRAGFYVSTQPTLFTRNVPTRYYGYVTQPWFIGHSQRENRHRAVRWFTSQPEHASNTEPQVTVSVPVDSNNYWYGVLGMSIPVRTMQQFLRNAIDKNLDGEYQLYDSKLRFLTSSNPDHPTGNIFDPRELALLAQAMEHDTRGGIRMDSRYVSWERLDHFDGVLVRVHTLSEGVRGDFGSISIALTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRVFASDNA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 0 +"G7049-MONOMER" "diguanylate cyclase DgcQ" ["DgcQ", "YedQ"] "MQHETKMENQSWLKKLARRLGPGHVVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHLENVANALDKHLQYNVDKLIFLRNGMREALVAPLDFTSLRDAVTEFEQHRDEHAWKIELNRRRTLPVNGVSDALVSEGNLLSRENESLDNEITAALEVGYLLRLAHNSSSMVEQAMYVSRAGFYVSTQPTLFTRNVPTRYYGYVTQPWFIGHSQRENRHRAVRWFTSQPEHASNTEPQVTVSVPVDSNNYWYGVLGMSIPVRTMQQFLRNAIDKNLDGEYQLYDSKLRFLTSSNPDHPTGNIFDPRELALLAQAMEHDTRGGIRMDSRYVSWERLDHFDGVLVRVHTLSEGVRGDFGSISIALTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRVFASDNA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 0 "G7050-MONOMER" "protein YodC" ["YodC"] "MSFMVSEEVTVKEGGPRMIVTGYSSGMVECRWYDGYGVKREAFHETELVPGEGSRSAEEV" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7051-MONOMER" "cell division protein DrpB" ["DrpB", "YedR"] "MEYGSTKMEERLSRSPGGKLALWAFYTWCGYFVWAMARYIWVMSRIPDAPVSGFESDLGSTAGKWLGALVGFLFMALVGALLGSIAWYTRPRPARSRRYE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7052-MONOMER" "putative outer membrane protein YedS, N-terminal fragment" ["YedS", "YedT", "YedS_1"] "MKRKVLAMLVPALLVAGAANAAEVYNKDGNKLDLYGKVVGLHYFSDDSGSDGDMSYARIGFKGETQIADQFTGYGQWEFNIGANGPESDKGNTATRLAFAGLGFGQNGTFDYGRNYGVVYDVEAWTDMLPEFGGDTYAGADNFMNGRANGVATYRNNGFFG*VDGLNFALQYQGNNESGGPFGQEGSGSGDGRSLSKENGDGFGMSTSYDFDFGLSLGAAYQTLIVQIVRLELV*MIVTIATEMLVVKPLKHGLLVQNMMLIMCI*QLCTLKLAI*PHMVVASLIMVNQDQPSLTKPKTLKLLLSISSTLACARPSLTCNLKVRI*AVGLMTATATHVTPIKIWLNTLILVRPTTSTKTCPPMLITKSTCWTTTMTSTKQTASLPMISLLWA*STS" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"G7051-MONOMER" "cell division protein DrpB" ["DrpB", "YedR"] "MEYGSTKMEERLSRSPGGKLALWAFYTWCGYFVWAMARYIWVMSRIPDAPVSGFESDLGSTAGKWLGALVGFLFMALVGALLGSIAWYTRPRPARSRRYE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7052-MONOMER" "putative outer membrane protein YedS, N-terminal fragment" ["YedS", "YedT", "YedS_1"] "MKRKVLAMLVPALLVAGAANAAEVYNKDGNKLDLYGKVVGLHYFSDDSGSDGDMSYARIGFKGETQIADQFTGYGQWEFNIGANGPESDKGNTATRLAFAGLGFGQNGTFDYGRNYGVVYDVEAWTDMLPEFGGDTYAGADNFMNGRANGVATYRNNGFFG*VDGLNFALQYQGNNESGGPFGQEGSGSGDGRSLSKENGDGFGMSTSYDFDFGLSLGAAYQTLIVQIVRLELV*MIVTIATEMLVVKPLKHGLLVQNMMLIMCI*QLCTLKLAI*PHMVVASLIMVNQDQPSLTKPKTLKLLLSISSTLACARPSLTCNLKVRI*AVGLMTATATHVTPIKIWLNTLILVRPTTSTKTCPPMLITKSTCWTTTMTSTKQTASLPMISLLWA*STS" [] [] 0 [] {} 0 "G7055-MONOMER" "protein/nucleic acid deglycase 1" ["YzzC", "YedU", "HchA", "Hsp31", "glyoxalase III", "Maillard deglycase 1"] "MTVQTSKNPQVDIAEDNAFFPSEYSLSQYTSPVSDLDGVDYPKPYRGKHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAYAG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"ZN+2": 1} 1 "G7056-MONOMER" "sensor histidine kinase HprS" ["HprS", "YedV"] "MKRLSITVRLTLLFILLLSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHGDSINKIVNRTNVSDGMLNNIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKINSIIICIVAIVLCSVLSPLLIRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQFADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARADKNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVNAIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLNKHNVFRITLPQRN" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "G7057-MONOMER" "DNA-binding transcriptional dual regulator HprR" ["YedW"] "MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7058-MONOMER" "hydroxyisourate hydrolase / transthyretin-related protein" ["HiuH", "YedX"] "MLKRYLVLSVATAAFSLPSLVNAAQQNILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYFKKQNLESFFPEIPVEFHINKVNEHYHVPLLLSQYGYSTYRGS" [] ["CCO-PERI-BAC"] 0 [] {} 1 "G7059-MONOMER" "protein-L-methionine sulfoxide reductase catalytic subunit MsrP" ["YedY", "MsrP", "periplasmic protein-L-methionine sulfoxide reductase catalytic subunit"] "MKKNQFLKESDVTAESVFFMKRRQVLKALGISATALSLPHAAHADLLSWFKGNDRPPAPAGKALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYAAQVASLYRGLDLRENF" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {"Molybdenum": 1, "CPD-8123": 1} 1 -"G7060-MONOMER" "membrane-bound flavocytochrome MsrQ" ["YedZ", "MsrQ", "periplasmic protein-L-methionine sulfoxide reductase heme binding subunit"] "MRLTAKQVTWLKVCLHLAGLLPFLWLVWAINHGGLGADPVKDIQHFTGRTALKFLLATLLITPLARYAKQPLLIRTRRLLGLWCFAWATLHLTSYALLELGVNNLALLGKELITRPYLTLGIISWVILLALAFTSTQAMQRKLGKHWQQLHNFVYLVAILAPIHYLWSVKIISPQPLIYAGLAVLLLALRYKKLRSLFNRLRKQVHNKLSV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"G7060-MONOMER" "membrane-bound flavocytochrome MsrQ" ["YedZ", "MsrQ", "periplasmic protein-L-methionine sulfoxide reductase heme binding subunit"] "MRLTAKQVTWLKVCLHLAGLLPFLWLVWAINHGGLGADPVKDIQHFTGRTALKFLLATLLITPLARYAKQPLLIRTRRLLGLWCFAWATLHLTSYALLELGVNNLALLGKELITRPYLTLGIISWVILLALAFTSTQAMQRKLGKHWQQLHNFVYLVAILAPIHYLWSVKIISPQPLIYAGLAVLLLALRYKKLRSLFNRLRKQVHNKLSV" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "G7061-MONOMER" "metal-binding protein ZinT" ["YodA", "ZinT", "cadmium-induced cadmium binding protein"] "MAIRLYKLAVALGVFIVSAPAFSHGHHSHGKPLTEVEQKAANGVFDDANVQNRTLSDWDGVWQSVYPLLQSGKLDPVFQKKADADKTKTFAEIKDYYHKGYATDIEMIGIEDGIVEFHRNNETTSCKYDYDGYKILTYKSGKKGVRYLFECKDPESKAPKYIQFSDHIIAPRKSSHFHIFMGNDSQQSLLNEMENWPTYYPYQLSSEEVVEEMMSH" ["CCO-CYTOSOL", "CCO-PERI-BAC"] ["CCO-PERI-BAC", "CCO-CYTOSOL"] 0 [] {"ZN+2": 2} 0 -"G7062-MONOMER" "putative cytochrome b561 YodB" ["YodB"] "MNRFSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLLMRETHYNAGIFVWVLMFSRLIIKHRYSDPSIVPPPPAWQMKAASLMHIMLYITFLALPLLGIALMAYSGKSWSFLGFNVSPFVTPNSEIKALIKNIHETWANIGYFLIAAHAGAALFHHYIQKDNTLLRMMPRRK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"PROTOHEME": 1} 0 +"G7062-MONOMER" "putative cytochrome b561 YodB" ["YodB"] "MNRFSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLLMRETHYNAGIFVWVLMFSRLIIKHRYSDPSIVPPPPAWQMKAASLMHIMLYITFLALPLLGIALMAYSGKSWSFLGFNVSPFVTPNSEIKALIKNIHETWANIGYFLIAAHAGAALFHHYIQKDNTLLRMMPRRK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7063-MONOMER" "Mlc titration factor" ["YeeI", "MtfA"] "MIKWPWKVQESAHQTALPWQEALSIPLLTCLTEQEQSKLVTLAERFLQQKRLVPLQGFELDSLRSCRIALLFCLPVLELGLEWLDGFHEVLIYPAPFVVDDEWEDDIGLVHNQRIVQSGQSWQQGPIVLNWLDIQDSFDASGFNLIIHEVAHKLDTRNGDRASGVPFIPLREVAGWEHDLHAAMNNIQEEIELVGENAASIDAYAASDPAECFAVLSEYFFSAPELFAPRFPSLWQRFCQFYQQDPLQRLHHANDTDSFSATNVH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G7064-MONOMER" "inverse autotransporter adhesin" ["YeeJ"] "MGIKLRRLTAGICLITQLAFPMAAAAQGVVNAATQQPVPAQIAIANANTVPYTLGALESAQSVAERFGISVAELRKLNQFRTFARGFDNVRQGDELDVPAQVSEKKLTPPPGNSSDNLEQQIASTSQQIGSLLAEDMNSEQAANMARGWASSQASGAMTDWLSRFGTARITLGVDEDFSLKNSQFDFLHPWYETPDNLFFSQHTLHRTDERTQINNGLGWRHFTPTWMSGINFFFDHDLSRYHSRAGIGAEYWRDYLKLSSNGYLRLTNWRSAPELDNDYEARPANGWDVRAESWLPAWPHLGGKLVYEQYYGDEVALFDKDDRQSNPHAITAGLNYTPFPLMTFSAEQRQGKQGENDTRFAVDFTWQPGSAMQKQLDPNEVAARRSLAGSRYDLVDRNNNIVLEYRKKELVRLTLTDPVTGKSGEVKSLVSSLQTKYALKGYNVEATALEAAGGKVVTTGKDILVTLPAYRFTSTPETDNTWPIEVTAEDVKGNLSNREQSMVVVQAPTLSQKDSSVSLSTQTLNADSHSTATLTFIAHDAAGNPVVGLVLSTRHEGVQDITLSDWKDNGDGSYTQILTTGAMSGTLTLMPQLNGVDAAKAPAVVNIISVSSSRTHSSIKIDKDRYLSGNPIEVTVELRDENDKPVKEQKQQLNNAVSIDNVKPGVTTDWKETADGVYKATYTAYTKGSGLTAKLLMQNWNEDLHTAGFIIDANPQSAKIATLSASNNGVLANENAANTVSVNVADEGSNPINDHTVTFAVLSGSATSFNNQNTAKTDVNGLATFDLKSSKQEDNTVEVTLENGVKQTLIVSFVGDSSTAQVDLQKSKNEVVADGNDSVTMTATVRDAKGNLLNDVMVTFNVNSAEAKLSQTEVNSHDGIATATLTSLKNGDYRVTASVSSGSQANQQVNFIGDQSTAALTLSVPSGDITVTNTAPQYMTATLQDKNGNPLKDKEITFSVPNDVASKFSISNGGKGMTDSNGVAIASLTGTLAGTHMIMARLANSNVSDAQPMTFVADKDRAVVVLQTSKAEIIGNGVDETTLTATVKDPSNHPVAGITVNFTMPQDVAANFTLENNGIAITQANGEAHVTLKGKKAGTHTVTATLGNNNTSDSQPVTFVADKASAQVVLQISKDEITGNGVDSATLTATVKDQFDNEVNNLPVTFSSASSGLTLTPGVSNTNESGIAQATLAGVAFGEKTVTASLANNGASDNKTVHFIGDTAAAKIIELAPVPDSIIAGTPQNSSGSVITATVVDNNGFPVKGVTVNFTSNAATAEMTNGGQAVTNEQGKATVTYTNTRSSIESGARPDTVEASLENGSSTLSTSINVNADASTAHLTLLQALFDTVSAGETTSLYIEVKDNYGNGVPQQEVTLSVSPSEGVTPSNNAIYTTNHDGNFYASFTATKAGVYQLTATLENGDSMQQTVTYVPNVANAEITLAASKDPVIADNNDLTTLTATVADTEGNAIANTEVTFTLPEDVKANFTLSDGGKVITDAEGKAKVTLKGTKAGAHTVTASMTGGKSEQLVVNFIADTLTAQVNLNVTEDNFIANNVGMTRLQATVTDGNGNPLANEAVTFTLPADVSASFTLGQGGSAITDINGKAEVTLSGTKSGTYPVTVSVNNYGVSDTKQVTLIADAGTAKLASLTSVYSFVVSTTEGATMTASVTDANGNPVEGIKVNFRGTSVTLSSTSVETDDRGFAEILVTSTEVGLKTVSASLADKPTEVISRLLNASADVNSATITSLEIPEGQVMVAQDVAVKAHVNDQFGNPVAHQPVTFSAEPSSQMIISQNTVSTNTQGVAEVTMTPERNGSYMVKASLPNGASLEKQLEAIDEKLTLTASSPLIGVYAPTGATLTATLTSANGTPVEGQVINFSVTPEGATLSGGKVRTNSSGQAPVVLTSNKVGTYTVTASFHNGVTIQTQTTVKVTGNSSTAHVASFIADPSTIAATNTDLSTLKATVEDGSGNLIEGLTVYFALKSGSATLTSLTAVTDQNGIATTSVKGAMTGSVTVSAVTTAGGMQTVDITLVAGPADTSQSVLKSNRSSLKGDYTDSAELRLVLHDISGNPIKVSEGMEFVQSGTNVPYIKISAIDYSLNINGDYKATVTGGGEGIATLIPVLNGVHQAGLSTTIQFTRAEDKIMSGTVSVNGTDLPTTTFPSQGFTGAYYQLNNDNFAPGKTAADYEFSSSASWVDVDATGKVTFKNVGSNSERITATPKSGGPSYVYEIRVKSWWVNAGEAFMIYSLAENFCSSNGYTLPRANYLNHCSSRGIGSLYSEWGDMGHYTTDAGFQSNMYWSSSPANSSEQYVVSLATGDQSVFEKLGFAYATCYKNL" [] ["CCO-OUTER-MEM"] 0 [] {} 0 "G7066-MONOMER" "putative glycosyltransferase, N-terminal fragment" ["YeeK", "YeeL_1", "YeeL"] "MFLASLLRRIAFSYYDYKAYNFNIEKTDFVVIHIPDQIGDAMAIFPVIRALELHKIKHLLIVTSTINLEVFNALKLEQTKLTLVTMTMQDHATLKEIKDLAKNITQQYGTPDLCIEGMRKKNLKTMLFISQLKAKTNFQVVGITMNCFSPLCKNASSMDQKLRAPVPMTWAFMMREAGFPAVRPIYELPLSEDVLDEVREEMRSLGSYIAFNLEGSSQERTFSLSIAENLIAKI*SETDIPIVIVHGPKGEDKARALVDCYNNVYRLSLPPSIKRSAAIIKDAYIAITPDTSILHMASAYNTPVVAIYADYKTRWPAMADVSESVVVGQKIDNISLDEFAKALKSVLARI" [] [] 0 [] {} 0 "G7068-MONOMER" "putative transcriptional regulator YeeN" ["YeeN"] "MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNTSLKFVIERAKQAQVPKHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSNVNRTIANVRTIFNKKGGNIGAAGSVSYMFDNTGVIVFKGTDPDHIFEILLEAEVDVRDVTEEEGNIVIYTEPTDLHKGIAALKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDALEDDDDVQKVYHNVANL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G7071-MONOMER" "DNA-binding transcriptional activator Cbl" ["Cbl"] "MNFQQLKIIREAARQDYNLTEVANMLFTSQSGVSRHIRELEDELGIEIFVRRGKRLLGMTEPGKALLVIAERILNEASNVRRLADLFTNDTSGVLTIATTHTQARYSLPEVIKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLVAFPWFRWHHSLLVPHDHPLTQISPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALGLGIGLVAEQSSGEQEEENLIRLDTRHLFDANTVWLGLKRGQLQRNYVWRFLELCNAGLSVEDIKRQVMESSEEEIDYQI" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7072-MONOMER" "DNA-binding transcriptional dual regulator Nac" ["Nac"] "MNFRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGELNQQLLIRTKRGVTPTDAGKILYTHARAILRQCEQAQLAVHNVGQALSGQVSIGFAPGTAASSITMPLLQAVRAEFPEIVIYLHENSGAVLNEKLINHQLDMAVIYEHSPVAGVSSQALLKEDLFLVGTQDCPGQSVDVNAIAQMNLFLPSDYSAIRLRVDEAFSLRRLTAKVIGEIESIATLTAAIASGMGVAVLPESAARSLCGAVNGWMSRITTPSMSLSLSLNLPARANLSPQAQAVKELLMSVISSPVMEKRQWQLVS" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7073-MONOMER" "L,D-transpeptidase LdtA" ["LdtA", "YzzT", "YeeG", "ErfK"] "MRRVNILCSFALLFASHTSLAVTYPLPPEGSRLVGQSFTVTVPDHNTQPLETFAAQYGQGLSNMLEANPGADVFLPKSGSQLTIPQQLILPDTVRKGIVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRREYAKRGESLPAFVPAGPDNPMGLYAIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKYLFDNVPVGTRVQIIDQPVKYTTEPDGSNWLEVHEPLSRNRAEYESDRKVPLPVTPSLRAFINGQEVDVNRANAALQRRSGMPVQISSGSRQMF" [] ["CCO-EXTRACELLULAR", "CCO-PERI-BAC"] 0 [] {} 0 +"G7073-MONOMER" "L,D-transpeptidase LdtA" ["LdtA", "YzzT", "YeeG", "ErfK"] "MRRVNILCSFALLFASHTSLAVTYPLPPEGSRLVGQSFTVTVPDHNTQPLETFAAQYGQGLSNMLEANPGADVFLPKSGSQLTIPQQLILPDTVRKGIVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRREYAKRGESLPAFVPAGPDNPMGLYAIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKYLFDNVPVGTRVQIIDQPVKYTTEPDGSNWLEVHEPLSRNRAEYESDRKVPLPVTPSLRAFINGQEVDVNRANAALQRRSGMPVQISSGSRQMF" [] ["CCO-PERI-BAC"] 0 [] {} 0 "G7074-MONOMER" "CP4-44 prophage; IS5 transposase and trans-activator" ["InsH6", "Trs5-6", "Yi52_6"] "MSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMVEVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRAKVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRADQMIRQWERSH" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7075-MONOMER" "CP4-44 prophage; TonB-dependent receptor plug domain-containing protein YoeA" ["YoeE", "YoeA", "YoeA_1"] "MLYNIPCRIYILSTLSLCISGIVSTATATSSETKISNEETLVVTTNRSASNLWESPATIQVIDQQTLQNSTNASIADNLQDIPGVEITDNSLAGRKQIRIRGEASSRVLILIDGQEVTYQRAGDNYGVGLLIDESALERVEVVKGPYSVLYGSQAIGGIVNFITKKG" [] ["CCO-MEMBRANE"] 0 [] {} 0 "G7079-MONOMER" "CP4-44 prophage; putative GTP-binding protein" ["YeeP"] "MVTQADKTEPCHEWDMAGIQPSPAQAQNIREKTEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRSQAREQFTGAVDRIFDTAESVCIASVARTVLRAVRDTVVSVARAVWNWIFF" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7080-MONOMER" "CP4-44 prophage; self recognizing antigen 43 (Ag43) autotransporter" ["Agn", "YeeQ", "YzzX", "Flu", "Ag43"] "MKRHLNTCYRLVWNHMTGAFVVASELARARGKRGGVAVALSLAAVTSLPVLAADIVVHPGETVNGGTLANHDNQIVFGTTNGMTISTGLEYGPDNEANTGGQWVQDGGTANKTTVTSGGLQRVNPGGSVSDTVISAGGGQSLQGRAVNTTLNGGEQWMHEGAIATGTVINDKGWQVVKPGTVATDTVVNTGAEGGPDAENGDTGQFVRGDAVRTTINKNGRQIVRAEGTANTTVVYAGGDQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKNGGVAGNTTVNQKGRLQVDAGGTATNVTLKQGGALVTSTAATVTGINRLGAFSVVEGKADNVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGSLTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEEGAFVQGNRLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQAMDYDRIVAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLMRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLWADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVSELPVNWWVQPSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAHSVSGSSAEGYNGQATLNVTF" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-EXTRACELLULAR", "CCO-OUTER-MEM"] 0 [] {} 0 -"G7081-MONOMER" "CP4-44 prophage; inner membrane protein YeeR" ["YeeR"] "MLQIVGALILLIAGFAILRLLFRALISTASALAGLILLCLFGPALLAGYITERITRLFHIRWLAGVFLTIAGMIISFMWGLDGKHIALEAHTFDSVKFILTTALAGGLLAVPLQIKNIQQNGITPEDISKEINGYYCCFYTAFFLMACSACAPLIALQYDISPSLMWWGGLLYWLAALVTLLWAASQIQALKKLTCAISQTLEEQPVLNSKSWLTSLQNDYSLPDSLTERIWLTLISQRISRGELREFELADGNWLLNNAWYERNMAGFNEQLKENLSFTPDELKTLFRNRLNLSPEANDDFLDRCLDGGDWYPFSEGRRFVSFHHVDELRICASCGLTEVHHAPENHKPDPEWYCSSLCRETETLCQEIYERPYNSFISDATANGLILMKLPETWSTNEKMFASGGQGHGFAAERGNHIVDRVRLKNARILGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNGPMQLEVPRDQYAGAVETMRNKIREGKVEER" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7080-MONOMER" "CP4-44 prophage; self recognizing antigen 43 (Ag43) autotransporter" ["Agn", "YeeQ", "YzzX", "Flu", "Ag43"] "MKRHLNTCYRLVWNHMTGAFVVASELARARGKRGGVAVALSLAAVTSLPVLAADIVVHPGETVNGGTLANHDNQIVFGTTNGMTISTGLEYGPDNEANTGGQWVQDGGTANKTTVTSGGLQRVNPGGSVSDTVISAGGGQSLQGRAVNTTLNGGEQWMHEGAIATGTVINDKGWQVVKPGTVATDTVVNTGAEGGPDAENGDTGQFVRGDAVRTTINKNGRQIVRAEGTANTTVVYAGGDQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKNGGVAGNTTVNQKGRLQVDAGGTATNVTLKQGGALVTSTAATVTGINRLGAFSVVEGKADNVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGSLTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALKLTGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATLKVKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEEGAFVQGNRLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQAMDYDRIVAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLMRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLWADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVSELPVNWWVQPSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAHSVSGSSAEGYNGQATLNVTF" ["CCO-OUTER-MEM"] ["CCO-PERI-BAC", "CCO-EXTRACELLULAR", "CCO-OUTER-MEM"] 0 [] {} 0 +"G7081-MONOMER" "CP4-44 prophage; inner membrane protein YeeR" ["YeeR"] "MLQIVGALILLIAGFAILRLLFRALISTASALAGLILLCLFGPALLAGYITERITRLFHIRWLAGVFLTIAGMIISFMWGLDGKHIALEAHTFDSVKFILTTALAGGLLAVPLQIKNIQQNGITPEDISKEINGYYCCFYTAFFLMACSACAPLIALQYDISPSLMWWGGLLYWLAALVTLLWAASQIQALKKLTCAISQTLEEQPVLNSKSWLTSLQNDYSLPDSLTERIWLTLISQRISRGELREFELADGNWLLNNAWYERNMAGFNEQLKENLSFTPDELKTLFRNRLNLSPEANDDFLDRCLDGGDWYPFSEGRRFVSFHHVDELRICASCGLTEVHHAPENHKPDPEWYCSSLCRETETLCQEIYERPYNSFISDATANGLILMKLPETWSTNEKMFASGGQGHGFAAERGNHIVDRVRLKNARILGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNGPMQLEVPRDQYAGAVETMRNKIREGKVEER" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7082-MONOMER" "CP4-44 prophage; RadC-like JAB domain-containing protein YeeS" ["YeeS"] "MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 "G7083-MONOMER" "CP4-44 prophage; DUF987 domain-containing protein YeeT" ["YeeT"] "MKIITRGEAMRIHQQHPTSRLFPFCTGKYRWHGSAEAYTGREVQDIPGVLAVFAERRKDSFGPYVRLMSVTLN" [] [] 0 [] {} 0 "G7084-MONOMER" "CP4-44 prophage; cytoskeleton bundling-enhancing antitoxin CbeA" ["CbeA", "YeeU", "CP4-44 prophage; antitoxin of the CbtA-CbeA toxin-antitoxin system"] "MSDTLPGTTLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCKADTLSSCDYVYLAVYPTPEMKN" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 @@ -2584,16 +2584,16 @@ "G7095-MONOMER" "putative colanic acid biosynthesis glycosyl transferase WcaL" ["YefL", "WcaL", "orf19"] "MKVGFFLLKFPLSSETFVLNQITAFIDMGFEVEILALQKGDTQNTHAAWTKYNLAARTRWLQDEPTGKVAKLRHRASQTLRGIHRKNTWQALNLKRYGAESRNLILSAICGQVATPFRADVFIAHFGPAGVTAAKLRELGVIRGKIATIFHGIDISSREVLNHYTPEYQQLFRRGDLMLPISDLWAGRLQKMGCPREKIAVSRMGVDMTRFSPRPVKAPATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEADKSGWLVPENDARALAQRLAAFSQLDTDELAPVVKRAREKVEHDFNQQVINRELASLLQAL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7096-MONOMER" "colanic acid biosynthesis pyruvyl transferase WcaK" ["WcaK", "orf18"] "MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVLRRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCTFMAKKPLFMIGHSVGPFQDEQFNQLANYVFGHCDALILRESVSFDLMKRSNITTAKVEHGVDTAWLVDHHTEDFTASYAVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRILDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHISDPARYHVVMDELNDLEMGKILGACELTVGTRLHSAIISMNFATPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPALNARLSEAVSRERQTGMQMVQSVLERIGEVK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7097-MONOMER" null ["Wzx", "WzxC", "colanic acid flippase"] "MSLREKTISGAKWSAIATVIIIGLGLVQMTVLARIIDNHQFGLLTVSLVIIALADTLSDFGIANSIIQRKEISHLELTTLYWLNVGLGIVVCVAVFLLSDLIGDVLNNPDLAPLIKTLSLAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTCTVVSAHFWPLAMTAILGYLVNSAVRTLLFGYFGRKIYRPGLHFSLASVAPNLRFGAWLTADSIINYLNTNLSTLVLARILGAGVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPALLGLMVVSNNFVPLVFGEKWNSIIPVLQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAIVIGGQMAGAIGVTLGFLLVQIINTILSYFVMIKPVLGSSYRQYILSLWLPFYLSLPTLVVSYALGIVLKGQLALGMLLAVQIATGVLAFVVMIVLSRHPLVVEVKRQFCRSEKMKMLLRAG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7098-MONOMER" "UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase" ["WcaJ", "undecaprenyl-phosphate glucose phosphotransferase"] "MTNLKKRERAKTNASLISMVQRFSDITIMFAGLWLVCEVSGLSFLYMHLLVALITLVVFQMLGGITDFYRSWRGVRAATEFALLLQNWTLSVIFSAGLVAFNNDFDTQLKIWLAWYALTSIGLVVCRSCIRIGAGWLRNHGYNKRMVAVAGDLAAGQMLMESFRNQPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMQMCDGARVKKLVHQLADTTCSVLLIPDVFTFNILHSRLEEMNGVPVVPLYDTPLSGVNRLLKRAEDIVLATLILLLISPVLCCIALAVKLSSPGPVIFRQTRYGMDGKPIKVWKFRSMKVMENDKVVTQATQNDPRVTKVGNFLRRTSLDELPQFINVLTGGMSIVGPRPHAVAHNEQYRQLIEGYMLRHKVKPGITGWAQINGWRGETDTLEKMEKRVEFDLEYIREWSVWFDIKIVFLTVFKGFVNKAAY" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7098-MONOMER" "UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase" ["WcaJ", "undecaprenyl-phosphate glucose phosphotransferase"] "MTNLKKRERAKTNASLISMVQRFSDITIMFAGLWLVCEVSGLSFLYMHLLVALITLVVFQMLGGITDFYRSWRGVRAATEFALLLQNWTLSVIFSAGLVAFNNDFDTQLKIWLAWYALTSIGLVVCRSCIRIGAGWLRNHGYNKRMVAVAGDLAAGQMLMESFRNQPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMQMCDGARVKKLVHQLADTTCSVLLIPDVFTFNILHSRLEEMNGVPVVPLYDTPLSGVNRLLKRAEDIVLATLILLLISPVLCCIALAVKLSSPGPVIFRQTRYGMDGKPIKVWKFRSMKVMENDKVVTQATQNDPRVTKVGNFLRRTSLDELPQFINVLTGGMSIVGPRPHAVAHNEQYRQLIEGYMLRHKVKPGITGWAQINGWRGETDTLEKMEKRVEFDLEYIREWSVWFDIKIVFLTVFKGFVNKAAY" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7099-MONOMER" "colanic acid biosynthesis acetyltransferase WcaF" ["WcaF"] "MQDLSGFSVPKGFRGGNAIKVQLWWAVQATIFAWSPQVLYRWRAFLLRLFGAKIGKNVVIRPSVKITYPWKLTLGDYAWVGDDVNLYTLGEITIGAHSVISQKSYLCTGSHDHASQHFTINATPIVIGEKCWLATDVFVAPGVTIGDGTVVGARSSVFKSLPANVVCRGNPAVVIRERVETE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7100-MONOMER" null ["WcaE", "colanic acid biosynthesis fucosyltransferase WcaE"] "MLLSIITVAFRNLEGIVKTHASLAHLAQVEDISFEWIVVDGGSNDGTREYLENLNGIFNLRFVSEPDNGIYDAMNKGIAMAQGKFALFLNSGDIFHQNAANFVRKLKMQKDNVMITGDALLDFGDGHKIKRSAKPGWYIYHSLPASHQAIFFPVSGLKKWRYDLEYKVSSDYALAAKMYKAGYAFKKLNGLVSEFSMGGVSTTNNMELCADAKKVQRQILHVPGFWAELSWHLRQRTTSKTKALYNKV" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7101-MONOMER" "colanic acid polymerase" ["WcaD"] "MSTSIRICSYLLLPLIYLLVNVKIAQLGESFPITIVTFLPVLLLLFLERISVKKLMIALGIGAGLTAFNYLFGQSLDASKYVTSTMLFVYIVIIIGMVWSIRFKTISPHNHRKILRFFYLVVGLVVALAAVEMAQIILTGGSSIMESISKYLIYSNSYVLNFIKFGGKRTTALYFEPAFFALALISIWLSIKQFGIKTPKTDAMILAGIILSGSFSGVMTFILFYLLEWAFQYLNKEAIKKKLPLALISLAVFLVGVVIAFPYISTRLGDLGTEGSSSYYRIVGPLVMVGYSLTHIDGVVRFGSLYEYVASFGIFNGADVGKTIDNGLYLLIIYFSWFAVFLSLWYMGKVIKMMINAFGDNRNFRVQLYLFTPVSLFFTGSIFSPEYAFLIVCPFILRKALNITR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7101-MONOMER" "colanic acid polymerase" ["WcaD"] "MSTSIRICSYLLLPLIYLLVNVKIAQLGESFPITIVTFLPVLLLLFLERISVKKLMIALGIGAGLTAFNYLFGQSLDASKYVTSTMLFVYIVIIIGMVWSIRFKTISPHNHRKILRFFYLVVGLVVALAAVEMAQIILTGGSSIMESISKYLIYSNSYVLNFIKFGGKRTTALYFEPAFFALALISIWLSIKQFGIKTPKTDAMILAGIILSGSFSGVMTFILFYLLEWAFQYLNKEAIKKKLPLALISLAVFLVGVVIAFPYISTRLGDLGTEGSSSYYRIVGPLVMVGYSLTHIDGVVRFGSLYEYVASFGIFNGADVGKTIDNGLYLLIIYFSWFAVFLSLWYMGKVIKMMINAFGDNRNFRVQLYLFTPVSLFFTGSIFSPEYAFLIVCPFILRKALNITR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7102-MONOMER" "colanic acid biosynthesis galactosyltransferase WcaC" ["WcaC"] "MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFGNFNELYRTITRTAGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCPTLNNYPPVKIDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIINNGIDMATEAILADLPPVRETQGKPKIAVVAHDLRYDGKTNQQLVREMMALGDKIELHTFGKFSPFTAGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVLQKSGGKTVSEEEVLQLVQLSKPEIAQAIFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7103-MONOMER" "colanic acid biosynthesis acetyltransferase WcaB" ["WcaB"] "MLEDLRANSWSLRPCCMVLAYRVAHFCSVWRKKNVLNNLWAAPLLVLYRIITECFFGYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITLGNNVTVGAGSVVLDSVPDNALVVGEKARVKVIK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7104-MONOMER" null ["WcaA"] "MKNNPLISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALNDPRITYIHNDINSGACAVRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLYANDYVCQGEVYSQPASLPLYPKSPYSRRLFYKRNIIGNQVFTWAWRFKECLFDTELKAAQDYDIFLRMVVEYGEPWKVEEATQILHINHGEMQITSSPKKFSGYFHFYRKHKDKFDRASKKYQLFTLYQIRNKRMTWRTLLTLLSVRNGKRLADGIRGR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7105-MONOMER" "protein-tyrosine kinase Wzc" ["Wzc"] "MTEKVKQHAAPVTGSDEIDIGRLVGTVIEARWWVIGITTVFALCAVVYTFFATPIYSADALVQIEQNSGNSLVQDIGSALANKPPASDAEIQLIRSRLVLGKTVDDLDLDIAVSKNTFPIFGAGWDRLMGRQNETVKVTTFNRPKEMADQVFTLNVLDNKNYTLSSDGGFSARGQAGQMLKKEGVTLMVEAIHASPGSEFTVTKYSTLGMINQLQNSLTVTENGKDAGVLSLTYTGEDREQIRDILNSIARNYQEQNIERKSAEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKVHPAYRTLLEKRQALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKEQELKITEASTVGDVRIVDPAITQPGVLKPKKGLIILGAIILGLMLSIVGVLLRSLFNRGIESPQVLEEHGISVYASIPLSEWQKARDSVKTIKGIKRYKQSQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRASAYQDYGYYEYEYKSDAK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "G7106-MONOMER" null ["Wzb"] "MFNNILVVCVGNICRSPTAERLLQRYHPELKVESAGLGALVGKGADPTAISVAAEHQLSLEGHCARQISRRLCRNYDLILTMEKRHIERLCEMAPEMRGKVMLFGHWDNECEIPDPYRKSRETFAAVYTLLERSARQWAQALNAEQV" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7107-MONOMER" "outer membrane polysaccharide export protein Wza" ["Wza"] "MMKSKMKLMPLLVSVTLISGCTVLPGSNMSTMGKDVIKQQDADFDLDKMVNVYPLTPRLIDQLRPRPNVARPNMTLESEIANYQYRVGPGDVLNVTVWDHPELTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVHVVGKTLAEIRSDITGRLATYIADPQVDVNIAAFRSQKAYISGQVNKSGQQAITNVPLTILDAINAAGGLTDTADWRNVVLTHNGREERISLQALMQNGDLNQNRLLYPGDILYVPRNDDLKVFVMGEVKKQSTLKMDFSGMTLTEALGNAEGIDMTTSNASGIFVIRPLKGEGGRNGKIANIYQLDMSDATSLVMATEFRLQPYDVVYVTTAPVSRWNRLINQLLPTISGVRYMTDTASDIHNW" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 +"G7107-MONOMER" "outer membrane polysaccharide export protein Wza" ["Wza"] "MMKSKMKLMPLLVSVTLISGCTVLPGSNMSTMGKDVIKQQDADFDLDKMVNVYPLTPRLIDQLRPRPNVARPNMTLESEIANYQYRVGPGDVLNVTVWDHPELTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVHVVGKTLAEIRSDITGRLATYIADPQVDVNIAAFRSQKAYISGQVNKSGQQAITNVPLTILDAINAAGGLTDTADWRNVVLTHNGREERISLQALMQNGDLNQNRLLYPGDILYVPRNDDLKVFVMGEVKKQSTLKMDFSGMTLTEALGNAEGIDMTTSNASGIFVIRPLKGEGGRNGKIANIYQLDMSDATSLVMATEFRLQPYDVVYVTTAPVSRWNRLINQLLPTISGVRYMTDTASDIHNW" [] ["CCO-OUTER-MEM"] 0 [] {} 1 "G7108-MONOMER" "inner membrane protein YegH" ["YegH"] "MEWIADPSIWAGLITLIVIELVLGIDNLVFIAILAEKLPPKQRDRARVTGLLLAMLMRLLLLASISWLVTLTQPLFSFRSFTFSARDLIMLFGGFFLLFKATMELNERLEGKDSNNPTQRKGAKFWGVVTQIVVLDAIFSLDSVITAVGMVDHLLVMMAAVVIAISLMLMASKPLTQFVNSHPTIVILCLSFLLMIGFSLVAEGFGFVIPKGYLYAAIGFSVMIEALNQLAIFNRRRFLSANQTLRQRTTEAVMRLLSGQKEDAELDAETASMLVDHGNQQIFNPQERRMIERVLNLNQRTVSSIMTSRHDIEHIDLNAPEEEIRQLLERNQHTRLVVTDGDDAEDLLGVVHVIDLLQQSLRGEPLNLRVLIRQPLVFPETLPLLPALEQFRNARTHFAFVVDEFGSVEGIVTLSDVTETIAGNLPNEVEEIDARHDIQKNADGSWTANGHMPLEDLVQYVPLPLDEKREYHTIAGLLMEYLQRIPKPGEEVQVGDYLLKTLQVESHRVQKVQIIPLRKDGEMEYEV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7109-MONOMER" "putative serine/threonine-protein kinase YegI" ["YegI"] "MKTNIKVFTSTGELTTLGRELGKGGEGAVYDIEEFVDSVAKIYHTPPPALKQDKLAFMAATADAQLLNYVAWPQATLHGGRGGKVIGFMMPKVSGKEPIHMIYSPAHRRQSYPHCAWDFLLYVARNIASSFATVHEHGHVVGDVNQNSFMVGRDSKVVLIDSDSFQINANGTLHLCEVGVSHFTPPELQTLPSFVGFERTENHDNFGLALLIFHVLFGGRHPYSGVPLISDAGNALETDITHFRYAYASDNQRRGLKPPPRSIPLSMLPSDVEAMFQQAFTESGVATGRPTAKAWVAALDSLRQQLKKCIVSAMHVYPAHLTDCPWCALDNQGVIYFIDLGEEVITTGGNFVLAKVWAMVMASVAPPALQLPLPDHFQPTGRPLPLGLLRREYIILLEIALSALSLLLCGLQAEPRYIILVPVLAAIWIIGSLTSKAYKAEVQQRREAFNRAKMDYDHLVRQIQQVGGLEGFIAKRTMLEKMKDEILGLPEEEKRALAALHDTARERQKQKFLEGFFIDVASIPGVGPARKAALRSFGIETAADVTRRGVKQVKGFGDHLTQAVIDWKASCERRFVFRPNEAITPADRQAVMAKMTAKRHRLESALTVGATELQRFRLHAPARTMPLMEPLRQAAEKLAQAQADLSRC" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7110-MONOMER" "DUF2314 domain-containing protein YegJ" ["YegJ"] "MKKILLMLSLLFFTTAGFSEVSDTLVTGGYDKQAMSDAIKHARKETDKFIEVMNKKDADTFAVKAPITDHGRTEHFWLTDVTYSNGMFIGVISNDPGIVTNVEYGQEWKIKKEDISDWMYTRGDKIYGGYTIDPLLVTYPKEEADELRAKLVR" [] [] 0 [] {} 0 @@ -2604,21 +2604,21 @@ "G7119-MONOMER" "prophage P2 late control protein OgrK" ["OgrK"] "MFHCPLCQHAAHARTSRYITDTTKERYHQCQNVNCSATFITYESVQRYIVKPGEVHVVRPHPLPSGQQIMWM" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7120-MONOMER" "phage protein D" ["YegZ", "putative protein fragment"] "MRVAEFSISLATGRADIYTETPVKVSGFKRVIDEQDWTITKVTHFLNNSGFTTSLELEVRLSDVGYETEDNE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7122-MONOMER" "uncharacterized protein YegR" ["YegR"] "MKKIAAISLISIFIMSGCAVHNDETSIGKFGLAYKSNIQRKLDNQYYTEAEASLARGRISGAENIVKNDATHFCVTQGKKMQIVELKTEGVGLHGVARLTFKCGE" [] [] 0 [] {} 0 -"G7123-MONOMER" "lipid kinase YegS" ["YegS"] "MAEFPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFATSVGIPEALDKALKLAIAGDAIAIDMAQVNKQTCFINMATGGFGTRITTETPEKLKAALGSVSYIIHGLMRMDTLQPDRCEIRGENFHWQGDALVIGIGNGRQAGGGQQLCPNALINDGLLQLRIFTGDEILPALVSTLKSDEDNPNIIEGASSWFDIQAPHDITFNLDGEPLSGQNFHIEILPAALRCRLPPDCPLLR" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 +"G7123-MONOMER" "lipid kinase YegS" ["YegS"] "MAEFPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFATSVGIPEALDKALKLAIAGDAIAIDMAQVNKQTCFINMATGGFGTRITTETPEKLKAALGSVSYIIHGLMRMDTLQPDRCEIRGENFHWQGDALVIGIGNGRQAGGGQQLCPNALINDGLLQLRIFTGDEILPALVSTLKSDEDNPNIIEGASSWFDIQAPHDITFNLDGEPLSGQNFHIEILPAALRCRLPPDCPLLR" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "G7126-MONOMER" "IS3 element protein InsF" ["Tra5-5", "InsF1"] "MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQFRQHCDSVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASRKFSPVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSMSAKGCCYDNACVESFFHSLKVECIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGGLSPEQFENKNLA" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7128-MONOMER" "putative tagatose-1,6-bisphosphate aldolase 2 chaperone" ["GatZ"] "MKTLIARHKAGEHIGICSVCSAHPLVIEAALAFDRNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVFTIADKVGFARERIILGGDHLGPNCWQQENADAAMEKSVELVKEYVRAGFSKIHLDASMSCAGDPIPLAPETVAERAAVLCFAAESVATDCQREQLSYVIGTEVPVPGGEASAIQSVHITHVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEAQPLAQWIENTRMVYEAHSTDYQTRTAYWELVRDHFAILKVGPALTFALREAIFALAQIEQELIAPENRSGCLAVIEEVMLDEPQYWKKYYRTGFNDSLLDIRYSLSDRIRYYWPHSRIKNSVETMMVNLEGVDIPLGMISQYLPKQFERIQSGELSAIPHQLIMDKIYDVLRAYRYGCAE" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"G7128-MONOMER" "putative tagatose-1,6-bisphosphate aldolase 2 chaperone" ["GatZ"] "MKTLIARHKAGEHIGICSVCSAHPLVIEAALAFDRNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVFTIADKVGFARERIILGGDHLGPNCWQQENADAAMEKSVELVKEYVRAGFSKIHLDASMSCAGDPIPLAPETVAERAAVLCFAAESVATDCQREQLSYVIGTEVPVPGGEASAIQSVHITHVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEAQPLAQWIENTRMVYEAHSTDYQTRTAYWELVRDHFAILKVGPALTFALREAIFALAQIEQELIAPENRSGCLAVIEEVMLDEPQYWKKYYRTGFNDSLLDIRYSLSDRIRYYWPHSRIKNSVETMMVNLEGVDIPLGMISQYLPKQFERIQSGELSAIPHQLIMDKIYDVLRAYRYGCAE" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "G7131-MONOMER" "putative ADP-ribosylglycohydrolase YegU" ["YegU"] "MKTERILGALYGQALGDAMGMPSELWPRSRVKAHFGWIDRFLPGPKENNAACYFNRAEFTDDTSMALCLADALLEREGKIDPDLIGRNILDWALRFDAFNKNVLGPTSKIALNAIRDGKPVAELENNGVTNGAAMRVSPLGCLLPARDVDSFIDDVALASSPTHKSDLAVAGAVVIAWAISRAIDGESWSAIVDSLPSIARHAQQKRITTFSASLAARLEIALKIVRNADGTESASEQLYQVVGAGTSTIESVPCAIALVELAQTDPNRCAVLCANLGGDTDTIGAMATAICGALHGVNAIDPALKAELDAVNQLDFNRYATALAKYRQQREAV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7132-MONOMER" "putative sugar kinase YegV" ["YegV"] "MSGARLHTLLPELTTRQSVMVVGAAVIDVIADAYALPWRGCDIELKQQSVNVGGCALNIAVALKRLGIEAGNALPLGQGVWAEMIRNRMAKEGLISLIDNAEGDNGWCLALVEPDGERTFMSFSGVENQWNRQWLARLTVAPGSLLYFSGYQLASPCGELLVEWLEELQDVTPFIDFGPRIGDIPDALLARIMACRPLVSLNRQEAEIAAERFALSAEITTLGKQWQEKFAAPLIVRLDKEGAWYFSNDASGCIPAFPTQVVDTIGAGDSHAGGVLAGLASGLPLADAVLLGNAVASWVVGHRGGDCAPTREELLLAHKNV" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7133-MONOMER" "putative DNA-binding transcriptional regulator YegW" ["YegW"] "MEQAHTQLIAQLNERILAADNTPLYIKFAETVKNAVRSGVLEHGNILPGERDLSQLTGVSRITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARGFSQQVVLRGKKPDTLWVNKRVVKCPEEVAQQLAVEAGSDVFLLKRIRYVDEEAVSIEESWVPAHLIHDVDAIGISLYDYFRSQHIYPQRTRSRVSARMPDAEFQSHIQLDSKIPVLVIKQVALDQQQRPIEYSISHCRSDLYVFVCEE" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"G7133-MONOMER" "DNA-binding transcriptional regulator GgaR" ["GgaR", "YegW"] "MEQAHTQLIAQLNERILAADNTPLYIKFAETVKNAVRSGVLEHGNILPGERDLSQLTGVSRITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARGFSQQVVLRGKKPDTLWVNKRVVKCPEEVAQQLAVEAGSDVFLLKRIRYVDEEAVSIEESWVPAHLIHDVDAIGISLYDYFRSQHIYPQRTRSRVSARMPDAEFQSHIQLDSKIPVLVIKQVALDQQQRPIEYSISHCRSDLYVFVCEE" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7134-MONOMER" "putative glycosyl hydrolase YegX" ["YegX"] "MQLRITSRKKLTSLLCALGLISIVAIYPRQTVNFFYSTAVQITDYIHFYGYRPVKSFAIRIPASYTIHGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRGAYHYFSPSVSASVQARLFLQTVDFSQGDFPAVLDVEERGKLSAKELRKRVSQWLKMVEKSTGKKPIIYSGAVFYHTNLAGYFNEYPWWVAHYYQRRPDNDGMAWRFWQHSDRGQVDGINGPVDFNVFNGTVEELQAFVDGIKETP" [] [] 0 [] {} 0 "G7137-MONOMER" "DNA-binding transcriptional repressor RcnR" ["YohL", "RcnR"] "MSHTIRDKQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAAIRGAVNGLMREVIKGHLTEHIVHQGDELKREEDLDVVLKVLDSYIK" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G7138-MONOMER" "Ni2+/Co2+ exporter" ["YohM", "RcnA"] "MTEFTTLLQQGNAWFFIPSAILLGALHGLEPGHSKTMMAAFIIAIKGTIKQAVMLGLAATISHTAVVWLIAFGGMVISKRFTAQSAEPWLQLISAVIIISTAFWMFWRTWRGERNWLENMHGHDYEHHHHDHEHHHDHGHHHHHEHGEYQDAHARAHANDIKRRFDGREVTNWQILLFGLTGGLIPCPAAITVLLICIQLKALTLGATLVVSFSIGLALTLVTVGVGAAISVQQVAKRWSGFNTLAKRAPYFSSLLIGLVGVYMGVHGFMGIMR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7139-MONOMER" "periplasmic protein involved in nickel/cobalt export" ["RcnB", "YohN"] "MTIKNKMLLGALLLVTSAAWAAPATAGSTNTSGISKYELSSFIADFKHFKPGDTVPEMYRTDEYNIKQWQLRNLPAPDAGTHWTYMGGAYVLISDTDGKIIKAYDGEIFYHR" ["CCO-CYTOSOL", "CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 +"G7138-MONOMER" "Ni2+/Co2+ exporter" ["YohM", "RcnA"] "MTEFTTLLQQGNAWFFIPSAILLGALHGLEPGHSKTMMAAFIIAIKGTIKQAVMLGLAATISHTAVVWLIAFGGMVISKRFTAQSAEPWLQLISAVIIISTAFWMFWRTWRGERNWLENMHGHDYEHHHHDHEHHHDHGHHHHHEHGEYQDAHARAHANDIKRRFDGREVTNWQILLFGLTGGLIPCPAAITVLLICIQLKALTLGATLVVSFSIGLALTLVTVGVGAAISVQQVAKRWSGFNTLAKRAPYFSSLLIGLVGVYMGVHGFMGIMR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7139-MONOMER" "periplasmic protein involved in Ni/Co export" ["RcnB", "YohN", "periplasmic protein involved in nickel/cobalt export"] "MTIKNKMLLGALLLVTSAAWAAPATAGSTNTSGISKYELSSFIADFKHFKPGDTVPEMYRTDEYNIKQWQLRNLPAPDAGTHWTYMGGAYVLISDTDGKIIKAYDGEIFYHR" ["CCO-CYTOSOL", "CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 "G7144-MONOMER" "DUF2542 domain-containing protein YeiS" ["YeiS"] "MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVYVWRAKNPGLFFAYMVAYIGFGILSIGMIVYLIFYR" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7145-MONOMER" "dihydropyrimidine dehydrogenase (NAD+) subunit PreT" ["PreT", "YeiT"] "MPQQNYLDELTPAFTSLLAIKEASRCLLCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAAETIRENNALGAVCARVCPTEKLCQSGCTRAGVDAPIDIGRLQRFVTDFEQQTGMEIYQPGTKTLGKVAIIGAGPAGLQASVTLTNQGYDVTIYEKEAHPGGWLRNGIPQFRLPQSVLDAEIARIEKMGVTIKCNNEVGNTLTLEQLKAENRAVLVTVGLSSGSGLPLFEHSDVEIAVDFLQRARQAQGDISIPQSALIIGGGDVAMDVASTLKVLGCQAVTCVAREELDEFPASEKEFTSARELGVSIIDGFTPVAVEGNKVTFKHVRLSGELTMAADKIILAVGQHARLDAFAELEPQRNTIKTQNYQTRDPQVFAAGDIVEGDKTVVYAVKTGKEAAEAIHHYLEGACSC" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G7146-MONOMER" "lipid A-core phosphotransferase" ["YeiU", "LpxT"] "MIKNLPQIVLLNIVGLALFLSWYIPVNHGFWLPIDADIFYFFNQKLVESKAFLWLVALTNNRAFDGCSLLAMGMLMLSFWLKENAPGRRRIVIIGLVMLLTAVVLNQLGQALIPVKRASPTLTFTDINRVSELLSVPTKDASRDSFPGDHGMMLLIFSAFMWRYFGKVAGLIALIIFVVFAFPRVMIGAHWFTDIIVGSMTVILIGLPWVLLTPLSDRLITFFDKSLPGKNKHFQNK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7147-MONOMER" "peptidoglycan endopeptidase/peptidoglycan L,D-carboxypeptidase" ["YeiV", "Spr"] "MVKSQPILRYILRGIPAIAVAVLLSACSANNTAKNMHPETRAVGSETSSLQASQDEFENLVRNVDVKSRIMDQYADWKGVRYRLGGSTKKGIDCSGFVQRTFREQFGLELPRSTYEQQEMGKSVSRSNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHASTSSGVIISSMNEPYWKKRYNEARRVLSRS" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 -"G7148-MONOMER" "putative c-di-GMP phosphodiesterase PdeN" ["PdeN", "Rtn"] "MFIRAPNFGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYDTLITDVQKYLDTYFADLKSTTDRLQPLTLDTCQQANPELTARAAFSMNVRTFVLVKDKKTFCSSATGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSGVFAALNLNLTPSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIAGIPLTVRLYADDWTWNDVWYAFLLGGMSGTVVGLLCYYLMSVRMRPGREIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELEKVLPVGVKFGINIAPDHLHSESFKADIQKLLTSLPAHHFQIVLEITERDMLKEQEATQLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLDDFVRWLKKPYTPQW" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7146-MONOMER" "lipid A-core phosphotransferase" ["YeiU", "LpxT"] "MIKNLPQIVLLNIVGLALFLSWYIPVNHGFWLPIDADIFYFFNQKLVESKAFLWLVALTNNRAFDGCSLLAMGMLMLSFWLKENAPGRRRIVIIGLVMLLTAVVLNQLGQALIPVKRASPTLTFTDINRVSELLSVPTKDASRDSFPGDHGMMLLIFSAFMWRYFGKVAGLIALIIFVVFAFPRVMIGAHWFTDIIVGSMTVILIGLPWVLLTPLSDRLITFFDKSLPGKNKHFQNK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7147-MONOMER" "peptidoglycan endopeptidase/peptidoglycan L,D-carboxypeptidase" ["YeiV", "Spr"] "MVKSQPILRYILRGIPAIAVAVLLSACSANNTAKNMHPETRAVGSETSSLQASQDEFENLVRNVDVKSRIMDQYADWKGVRYRLGGSTKKGIDCSGFVQRTFREQFGLELPRSTYEQQEMGKSVSRSNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHASTSSGVIISSMNEPYWKKRYNEARRVLSRS" [] ["CCO-OUTER-MEM"] 0 [] {} 0 +"G7148-MONOMER" "putative c-di-GMP phosphodiesterase PdeN" ["PdeN", "Rtn"] "MFIRAPNFGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYDTLITDVQKYLDTYFADLKSTTDRLQPLTLDTCQQANPELTARAAFSMNVRTFVLVKDKKTFCSSATGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSGVFAALNLNLTPSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIAGIPLTVRLYADDWTWNDVWYAFLLGGMSGTVVGLLCYYLMSVRMRPGREIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELEKVLPVGVKFGINIAPDHLHSESFKADIQKLLTSLPAHHFQIVLEITERDMLKEQEATQLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLDDFVRWLKKPYTPQW" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7152-MONOMER" "DUF2135 domain-containing protein YfaP" ["YfaP"] "MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPIHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW" [] [] 0 [] {} 0 "G7153-MONOMER" "tandem DUF2300 domain-containing protein YfaQ" ["YfaQ"] "MNWRRIVWLLALVTLPTLAEETPLQLVLRGAQHDQLYQLSSSGVTKVSALPDSLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTAVNPGVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMTAWTQDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQAETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD" [] [] 0 [] {} 0 "G7155-MONOMER" "putative macroglobulin family protein, N-terminal fragment" ["YfaR", "YfaS_1", "YfaS"] "MDTQRFQSQFHWHLSFKFSGAIAACLSLSLVGTGLANADDSLPSSNYAPPAGGTFFLLADSSFSSSEEAKVRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVKQFRYPLWQAKPFEPQQGVKLEGASSNFISPQPGNIYIPLGQQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGKELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDDSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVIGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVAGGYELRLAYRNQVYSSSFRVANYIKPHFEIGLALAKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDASGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTAHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQAIGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDTRDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQTAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEDWRWVGQGVPDILSFGDELSPQNVQVR*REPAKMAQQSNIPVTVERQLYRLIPGEEEMSFILQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAAKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAAGSEWTGMQVK" [] [] 0 [] {} 0 @@ -2627,17 +2627,17 @@ "G7160-MONOMER" "L-rhamnonate dehydratase" ["RhmD", "YfaW"] "MTLPKIKQVRAWFTGGATAEKGAGGGDYHDQGANHWIDDHIATPMSKYRDYEQSRQSFGINVLGTLVVEVEAENGQTGFAVSTAGEMGCFIVEKHLNRFIEGKCVSDIKLIHDQMLSATLYYSGSGGLVMNTISCVDLALWDLFGKVVGLPVYKLLGGAVRDEIQFYATGARPDLAKEMGFIGGKMPTHWGPHDGDAGIRKDAAMVADMREKCGEDFWLMLDCWMSQDVNYATKLAHACAPYNLKWIEECLPPQQYESYRELKRNAPVGMMVTSGEHHGTLQSFRTLSETGIDIMQPDVGWCGGLTTLVEIAAIAKSRGQLVVPHGSSVYSHHAVITFTNTPFSEFLMTSPDCSTMRPQFDPILLNEPVPVNGRIHKSVLDKPGFGVELNRDCNLKRPYSH" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "G7161-MONOMER" "putative DNA-binding transcriptional regulator YfaX" ["YfaX"] "MLESSKVPALTRAIDILNLIARIGPCSAATIIDTLGIPKSTAYLLLNELRRQRFLSLDHQENFCLWTRLVELSGHALSKMDLRELARPRLTQLMDTTGLLCHLGIIDNGSAYYILKVESSATISVRSHEGKSLSLYRSGIGKCLLAWQPAAVQQSIIEGLVWEQATPTTITHPQQLHEELARIRRQGWSYDNGEDYADVRCVAAPVFNANNELTAAISVVGTRLQINEEYRDYLAGKAIACARDISRLLGWKSPFDLQAS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7162-MONOMER" "IPR008135 CinA family protein YfaY" ["YfaY"] "MLKVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDDLVTILRERSQHADVLIVNGGLGPTSDDLSALAAATAKGEGLVLHEAWLKEMERYFHERGRVMAPSNRKQAELPASAEFINNPVGTACGFAVQLNRCLMFFTPGVPSEFKVMVEHEILPRLRERFSLPQPPVCLRLTTFGRSESDLAQSLDTLQLPPGVTMGYRSSMPIIELKLTGPASEQQAMEKLWLDVKRVAGQSVIFEGTEGLPAQISRELQNRQFSLTLSEQFTGGLLALQLSRAGAPLLACEVVPSQEETLAQTAHWITERRANHFAGLALAVSGFENEHLNFALATPDGTFALRVRFSTTRYSLAIRQEVCAMMALNMLRRWLNGQDIASEHGWIEVVESMTLSV" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7163-MONOMER" "putative porin YfaZ" ["YfaZ"] "MKKIALAGLAGMLLVSASVNAMSISGQAGKEYTNIGVGFGTETTGLALSGNWTHNDDDGDVAGVGLGLNLPLGPLMATVGGKGVYTNPNYGDEGYAAAVGGGLQWKIGNSFRLFGEYYYSPDSLSSGIQSYEEANAGARYTIMRPVSIEAGYRYLNLSGKDGNRDNAVADGPYVGVNASF" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"G7163-MONOMER" "putative porin YfaZ" ["YfaZ"] "MKKIALAGLAGMLLVSASVNAMSISGQAGKEYTNIGVGFGTETTGLALSGNWTHNDDDGDVAGVGLGLNLPLGPLMATVGGKGVYTNPNYGDEGYAAAVGGGLQWKIGNSFRLFGEYYYSPDSLSSGIQSYEEANAGARYTIMRPVSIEAGYRYLNLSGKDGNRDNAVADGPYVGVNASF" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 0 "G7164-MONOMER" "pyrimidine deoxynucleotide diphosphatase NudI" ["YfaO", "NudI", "Orf141", "pyrimidine deoxynucleoside triphosphate pyrophosphohydrolase"] "MRQRTIVCPLIQNDGAYLLCKMADDRGVFPGQWAISGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFSDDIRTKTYADGRKEEIYMIYLIFDCVSANREVKINEEFQDYAWVKPEDLVHYDLNVATRKTLRLKGLL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7165-MONOMER" "putative lipopolysaccharide core heptose(II)-phosphate phosphatase" ["PmrG", "PagH", "Ais"] "MLAFCRSSLKSKKYIIILLALAAIAGLGTHAAWSSNGLPRIDNKTLARLAQQHPVVVLFRHAERCDRSTNQCLSDKTGITVKGTQDARELGNAFSADIPDFDLYSSNTVRTIQSATWFSAGKKLTVDKRLLQCGNEIYSAIKDLQSKAPDKNIVIFTHNHCLTYIAKDKRDATFKPDYLDGLVMHVEKGKVYLDGEFVNH" [] ["CCO-PERI-BAC"] 0 [] {} 0 "G7166-MONOMER" null ["YfbE", "PmrH", "ArnB"] "MAEGKAMSEFLPFSRPAMGVEELAAVKEVLESGWITTGPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALKIGKGDEVITPSLTWVSTLNMISLLGATPVMVDVDRDTLMVTPEAIESAITPRTKAIIPVHYAGAPADIDAIRAIGERYGIAVIEDAAHAVGTYYKGRHIGAKGTAIFSFHAIKNITCAEGGLIVTDNENLARQLRMLKFHGLGVDAYDRQTWGRAPQAEVLTPGYKYNLTDINAAIALTQLVKLEHLNTRRREIAQQYQQALAALPFQPLSLPAWPHVHAWHLFIIRVDEQRCGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTTADADHVITALQQLAGQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7167-MONOMER" null ["YfbF", "PmrF", "ArnC"] "MFEIHPVKKVSVVIPVYNEQESLPELIRRTTTACESLGKEYEILLIDDGSSDNSAHMLVEASQAENSHIVSILLNRNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYGCMLRAYRRHIVDAMLHCHERSTFIPILANIFARRAIEIPVHHAEREFGESKYSFMRLINLMYDLVTCLTTTPLRMLSLLGSIIAIGGFSIAVLLVILRLTFGPQWAAEGVFMLFAVLFTFIGAQFIGMGLLGEYIGRIYTDVRARPRYFVQQVIRPSSKENE" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"G7167-MONOMER" null ["YfbF", "PmrF", "ArnC"] "MFEIHPVKKVSVVIPVYNEQESLPELIRRTTTACESLGKEYEILLIDDGSSDNSAHMLVEASQAENSHIVSILLNRNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYGCMLRAYRRHIVDAMLHCHERSTFIPILANIFARRAIEIPVHHAEREFGESKYSFMRLINLMYDLVTCLTTTPLRMLSLLGSIIAIGGFSIAVLLVILRLTFGPQWAAEGVFMLFAVLFTFIGAQFIGMGLLGEYIGRIYTDVRARPRYFVQQVIRPSSKENE" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7168-MONOMER" "fused UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronate dehydrogenase" ["ArnA", "YfbG", "PmrI"] "MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQGSRLNSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLTDKPS" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7169-MONOMER" "putative 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD" ["YfbH", "PmrJ", "ArnD"] "MTKVGLRIDVDTFRGTREGVPRLLEILSKHNIQASIFFSVGPDNMGRHLWRLVKPQFLWKMLRSNAASLYGWDILLAGTAWPGKEIGHANADIIREAAKHHEVGLHAWDHHAWQARSGNWDRQTMIDDIARGLRTLEEIIGQPVTCSAAAGWRADQKVIEAKEAFHLRYNSDCRGAMPFRPLLESGNPGTAQIPVTLPTWDEVIGRDVKAEDFNGWLLNRILRDKGTPVYTIHAEVEGCAYQHNFVDLLKRAAQEGVTFCPLSELLSETLPLGQVVRGNIAGREGWLGCQQIAGSR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7170-MONOMER" null ["YfbI", "ArnT", "PmrK"] "MKSVRYLIGLFAFIACYYLLPISTRLLWQPDETRYAEISREMLASGDWIVPHLLGLRYFEKPIAGYWINSIGQWLFGANNFGVRAGVIFATLLTAALVTWFTLRLWRDKRLALLATVIYLSLFIVYAIGTYAVLDPFIAFWLVAGMCSFWLAMQAQTWKGKSAGFLLLGITCGMGVMTKGFLALAVPVLSVLPWVATQKRWKDLFIYGWLAVISCVLTVLPWGLAIAQREPNFWHYFFWVEHIQRFALDDAQHRAPFWYYVPVIIAGSLPWLGLLPGALYTGWKNRKHSATVYLLSWTIMPLLFFSVAKGKLPTYILSCFASLAMLMAHYALLAAKNNPLALRINGWINIAFGVTGIIATFVVSPWGPMNTPVWQTFESYKVFCAWSIFSLWAFFGWYTLTNVEKTWPFAALCPLGLALLVGFSIPDRVMEGKHPQFFVEMTQESLQPSRYILTDSVGVAAGLAWSLQRDDIIMYRQTGELKYGLNYPDAKGRFVSGDEFANWLNQHRQEGIITLVLSVDRDEDINSLAIPPADAIDRQERLVLIQYRPK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7171-MONOMER" "undecaprenyl-phosphate-α-L-Ara4N flippase - ArnF subunit" ["YfbJ"] "MGLMWGLFSVIIASVAQLSLGFAASHLPPMTHLWDFIAALLAFGLDARILLLGLLGYLLSVFCWYKTLHKLALSKAYALLSMSYVLVWIASMVLPGWEGTFSLKALLGVACIMSGLMLIFLPTTKQRY" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "G7172-MONOMER" "signal transduction protein PmrD" ["PmrD", "polymyxin B resistance protein"] "MEWLVKKSCCNKQDNRHVLMLCDAGGAIKMIAEVKSDFAVKVGDLLSPLQNALYCINREKLHTVKVLSASSYSPDEWERQCKVAGKTQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7173-MONOMER" "tail-anchored inner membrane protein ElaB" ["YfbD", "ElaB"] "MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQGIGVGAAVGLVLGLLLARR" ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7173-MONOMER" "tail-anchored inner membrane protein ElaB" ["YfbD", "ElaB"] "MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQGIGVGAAVGLVLGLLLARR" ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7174-MONOMER" "putative acetyltransferase ElaA" ["YfbC", "ElaA"] "MIEWQDLHHSELSVSQLYALLQLRCAVFVVEQNCPYQDIDGDDLTGDNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLETCTHHWPDKPVYLGAQAHLQNFYQSFGFIPVTEVYEEDGIPHIGMAREVIQA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7175-MONOMER" "ribonuclease BN" ["Rnz", "EcoZ", "ZipD", "ElaC", "Rbn"] "MELIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDAALDLAKGVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSIFPATELANDFTVFNV" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 2} 1 "G7176-MONOMER" "protease ElaD" ["ElaD", "deubiquitinase"] "MMVTVVSNYCQLSQTQLSQTFAEKFTVTEELLQSLKKTALSGDEESIELLHNIALGYDKFGKEAEDILYHIVRTPTNETLSIIRLIKNACLKLYNLAHIATNSPLKSHDSDDLLFKKLFSPSKLMTIIGDEIPLISEKQSLSKVLLNDENNELSDGTNFWDKNRQLTTDEIACYLQKIAANAKNTQVNYPTGLYVPYSTRTHLEDALNENIKSDPSWPNEVQLFPINTGGHWILVSLQKIVNKKNNKLQIKCVIFNSLRALGYDKENSLKRVINSFNSELMGEMSNNNIKVHLNEPEIIFLHADLQQYLSQSCGAFVCMAAQEVIEQRESNSDSAPYTLLKNHADRFKKYSAEEQYEIDFQHRLANRNCYLDKYGDANINHYYRNLEIKHSQPKNRASGKRVS" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -2652,7 +2652,7 @@ "G7186-MONOMER" "putative transporter YfbS" ["YfbS"] "MNGELIWVLSLLAVAIVLFATGRVRMDAVALFVIVAFALSGTLTVPEVFSGFSDPNVVLIAALFIIGDGLVRTGVATVMGTWLVKVAGNSEIKMLVLLMLTVAGLGAFMSSTGVVAIFIPVVLSVAMRMQTSPSRLMMPLSFAGLISGMMTLVATPPNLVVNSELLREGYHGFSFFSVTPIGLVVLVLGILYMLVMRFMLKGDTQTPQREGWTRRTFRDLIREYRLTGRARRLAIRPGSPMIGQRLDDLKLRERYGANVIGVERWRRFRRVIVNVNGVSEFRARDVLLIDMSAADVDLRQFCSEQLLEPMVLRGEYFSDQALDVGMAEISLIPESELIGKSVREIGFRTRYGLNVVGLKRNGVALEGSLADEPLLLGDIILVVGNWKLIGMLAKQGRDFVALNLPEEVSEASPAHSQAPHAIFCLVLMVALMLTDEIPNPVAAIIACLLMGKFRCIDAESAYKSIHWPSIILIVGMMPFAVALQKTGGVALAVKGLMDIGGGYGPHMMLGCLFVLSAVIGLFISNTATAVLMAPIALAAAKTMGVSPYPFAMVVAMAASAAFMTPVSSPVNTLVLGPGNYSFSDFVKLGVPFTIIVMAVCVVMIPMLFPF" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7187-MONOMER" "hexitol phosphatase A" ["HxpA", "YfbT", "sugar phosphatase YfbT", "HAD2"] "MRCKGFLFDLDGTLVDSLPAVERAWSNWARRHGLAPEEVLAFIHGKQAITSLRHFMAGKSEADIAAEFTRLEHIEATETEGITALPGAIALLSHLNKAGIPWAIVTSGSMPVARARHKIAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVVVEDAPAGVLSGLAAGCHVIAVNAPADTPRLNEVDLVLHSLEQITVTKQPNGDVIIQ" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "G7188-MONOMER" "PF03887 family protein YfbU" ["YfbU", "UPF0304 family protein YfbU"] "MEMTNAQRLILSNQYKMMTMLDPANAERYRRLQTIIERGYGLQMRELDREFGELKEETCRTIIDIMEMYHALHVSWSNLQDQQSIDERRVTFLGFDAATEARYLGYVRFMVNVEGRYTHFDAGTHGFNAQTPMWEKYQRMLNVWHACPRQYHLSANEINQIINA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"G7189-MONOMER" "PF04217 family membrane protein YfbV" ["YfbV", "protein involved in regulation of chromosome structure"] "MSTPDNRSVNFFSLFRRGQHYSKTWPLEKRLAPVFVENRVIKMTRYAIRFMPPIAVFTLCWQIALGGQLGPAVATALFALSLPMQGLWWLGKRSVTPLPPAILNWFYEVRGKLQESGQVLAPVEGKPDYQALADTLKRAFKQLDKTFLDDL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7189-MONOMER" "PF04217 family membrane protein YfbV" ["YfbV", "protein involved in regulation of chromosome structure"] "MSTPDNRSVNFFSLFRRGQHYSKTWPLEKRLAPVFVENRVIKMTRYAIRFMPPIAVFTLCWQIALGGQLGPAVATALFALSLPMQGLWWLGKRSVTPLPPAILNWFYEVRGKLQESGQVLAPVEGKPDYQALADTLKRAFKQLDKTFLDDL" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7190-MONOMER" "putative transporter YfcC" ["YfcC"] "MSAITESKPTRRWAMPDTLVIIFFVAILTSLATWVVPVGMFDSQEVQYQVDGQTKTRKVVDPHSFRILTNEAGEPEYHRVQLFTTGDERPGLMNFPFEGLTSGSKYGTAVGIIMFMLVIGGAFGIVMRTGTIDNGILALIRHTRGNEILFIPALFILFSLGGAVFGMGEEAVAFAIIIAPLMVRLGYDSITTVLVTYIATQIGFASSWMNPFCVVVAQGIAGVPVLSGSGLRIVVWVIATLIGLIFTMVYASRVKKNPLLSRVHESDRFFREKQADVEQRPFTFGDWLVLIVLTAVMVWVIWGVIVNAWFIPEIASQFFTMGLVIGIIGVVFRLNGMTVNTMASSFTEGARMMIAPALLVGFAKGILLLVGNGEAGDASVLNTILNSIANAISGLDNAVAAWFMLLFQAVFNFFVTSGSGQAALTMPLLAPLGDLVGVNRQVTVLAFQFGDGFSHIIYPTSASLMATLGVCRVDFRNWLKVGATLLGLLFIMSSVVVIGAQLMGYH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7191-MONOMER" "putative Nudix hydrolase YfcD" ["YfcD"] "MEQRRLASTEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMKRNAKNEAVETETAE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "G7192-MONOMER" "phosphodiesterase YfcE" ["YfcE"] "MMKLMFASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVAERLNEVAHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHLFGPENLPALNQNDVLVYGHTHLPVAEQRGEIFHFNPGSVSIPKGGNPASYGMLDNDVLSVIALNDQSIIAQVAINP" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MN+2": 2} 1 @@ -2680,8 +2680,8 @@ "G7217-MONOMER" "inner membrane protein YfdC" ["YfdC"] "MDNDKIDQHSDEIEVESEEKERGKKIEIDEDRLPSRAMAIHEHIRQDGEKELERDAMALLWSAIAAGLSMGASLLAKGIFQVELEGVPGSFLLENLGYTFGFIIVIMARQQLFTENTVTAVLPVMQKPTMSNVGLLIRLWGVVLLGNILGTGIAAWAFEYMPIFNEETRDAFVKIGMDVMKNTPSEMFANAIISGWLIATMVWMFPAAGAAKIVVIILMTWLIALGDTTHIVVGSVEILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMSHAQIRNDMSNKRKAEARQKAERAENIKKNYKNPA" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7218-MONOMER" "CPS-53 (KpLE1) prophage; prophage CPS-53 integrase" ["IntC", "YfdB", "IntS"] "MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7219-MONOMER" "CPS-53 (KpLE1) prophage; putative bactoprenol-linked glucose translocase" ["GtrA", "YfdG", "gtrAEC"] "MLKLFAKYTSIGVLNTLIHWVVFGVCIYVAHTNQALANFAGFVVAVSFSFFANAKFTFKASTTTMRYMLYVGFMGTLSATVGWAADRCALPPMITLVTFSAISLVCGFVYSKFIVFRDAK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7220-MONOMER" "CPS-53 (KpLE1) prophage; bactoprenol glucosyl transferase" ["GtrB", "YfdH"] "MKISLVVPVFNEEEAIPIFYKTVREFEELKSYEVEIVFINDGSKDATESIINALAVSDPLVVPLSFTRNFGKEPALFAGLDHATGDAIIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRLKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRDVVENIKLMPERNLFMKGILSWVGGKTDIVEYVRAERIAGDTKFNGWKLWNLALEGITSFSTFPLRIWTYIGLVVASVAFIYGAWMILDTIIFGNAVRGYPSLLVSILFLGGIQMIGIGVLGEYIGRTYIETKKRPKYIIKRVKK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7221-MONOMER" "CPS-53 (KpLE1) prophage; serotype-specific glucosyl transferase YfdI" ["GtrS", "YfdI", "GtrIV", "GtrIVEC"] "MNKAIKVSLYISFVLIICALSKNIMMLNTSDFGRAIKPLIEDIPAFTYDLPLLYKLKGHIDSIDSYEYISSYSYILYTYVLFISIFTEYLDARVLSLFLKVIYIYSLYAIFTSYIKTERYVTLFTFFILAFLMCSSSTLSMFASFYQEQIVIIFLPFLVYSLTCKNNKSMLLLFFSLLIISTAKNQFILTPLIVYSYYIFFDRHKLIIKSVICVVCLLASIFAISYSKGVVELNKYHATYFGSYLYMKNNGYKMPSYVDDKCVGLDAWGNKFDISFGATPTEVGTECFESHKDETFSNALFLLVSKPSTIFKLPFDDGVMSQYKENYFHVYKKLHVIYGESNILTTITNIKDNIFKNIRFISLLLFFIASIFIRNNKIKASLFVVSLFGISQFYVSFFGEGYRDLSKHLFGMYFSFDLCLYITVVFLIYKIIQRNQDNSDVKH" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7220-MONOMER" "CPS-53 (KpLE1) prophage; bactoprenol glucosyl transferase" ["GtrB", "YfdH"] "MKISLVVPVFNEEEAIPIFYKTVREFEELKSYEVEIVFINDGSKDATESIINALAVSDPLVVPLSFTRNFGKEPALFAGLDHATGDAIIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRLKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRDVVENIKLMPERNLFMKGILSWVGGKTDIVEYVRAERIAGDTKFNGWKLWNLALEGITSFSTFPLRIWTYIGLVVASVAFIYGAWMILDTIIFGNAVRGYPSLLVSILFLGGIQMIGIGVLGEYIGRTYIETKKRPKYIIKRVKK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7221-MONOMER" "CPS-53 (KpLE1) prophage; serotype-specific glucosyl transferase YfdI" ["GtrS", "YfdI", "GtrIV", "GtrIVEC"] "MNKAIKVSLYISFVLIICALSKNIMMLNTSDFGRAIKPLIEDIPAFTYDLPLLYKLKGHIDSIDSYEYISSYSYILYTYVLFISIFTEYLDARVLSLFLKVIYIYSLYAIFTSYIKTERYVTLFTFFILAFLMCSSSTLSMFASFYQEQIVIIFLPFLVYSLTCKNNKSMLLLFFSLLIISTAKNQFILTPLIVYSYYIFFDRHKLIIKSVICVVCLLASIFAISYSKGVVELNKYHATYFGSYLYMKNNGYKMPSYVDDKCVGLDAWGNKFDISFGATPTEVGTECFESHKDETFSNALFLLVSKPSTIFKLPFDDGVMSQYKENYFHVYKKLHVIYGESNILTTITNIKDNIFKNIRFISLLLFFIASIFIRNNKIKASLFVVSLFGISQFYVSFFGEGYRDLSKHLFGMYFSFDLCLYITVVFLIYKIIQRNQDNSDVKH" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7223-MONOMER" "CPS-53 (KpLE1) prophage; putative tail fiber assembly protein YfdK" ["YfdK"] "MNYIYSATTNSFYPLEMKEDYTQAGSWPDDAVEVDEQVYIEFSGLPPKGKIRIAGENGFPAWSEIPPPTHEEQIAAAELKKQQLINQANDYMNSKQWAGKAAIGRLKGEELAQYNLWLDYLDALELVDTSSAPDIEWPTPPAVQAR" [] [] 0 [] {} 0 "G7224-MONOMER" "CPS-53 (KpLE1) prophage; putative uncharacterized protein YfdL" ["YfdL"] "MLQEELCSVVEASGASLEKGRHDQLLTALRALLLSRKNPFGDIKLDGTVQKALENLGLGEAAKRNVGTGANQIPDMGSFMLSASVPGYQKLPSGLIIQWGPIDVPLTSQDTVTYFPIAFPNRCLRVFATQDYTPGSANVGYIACAGYNQDPVKFISRAGVPGIGASFFALGC" [] ["CCO-MEMBRANE"] 0 [] {} 0 "G7225-MONOMER" "CPS-53 (KpLE1) prophage; putative methyltransferase YfdM" ["YzyB", "YfdM"] "MSNKYCQALVELRNKPAHELKEVGDQWRTPDNIFWGINTLFGPFVLDLFTDGDNAKCAAYYTAEDNALAHDWSERLAELKGAAFGNPPYPW" [] [] 0 [] {} 0 @@ -2692,13 +2692,13 @@ "G7230-MONOMER" "CPS-53 (KpLE1) prophage; 5'-deoxynucleotidase" ["YfdR"] "MSFIKTFSGKHFYYDKINKDDIVINDIAVSLSNICRFAGHLSHFYSVAQHAVLCSQLVPQEFAFEALMHDATEAYCQDIPAPLKRLLPDYKRMEEKIDAVIREKYGLPPVMSTPVKYADLIMLATERRDLGLDDGSFWPVLEGIPATEMFNVIPLAPGHAYGMFMERFNDLSELRKCA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7231-MONOMER" "CPS-53 (KpLE1) prophage; protein YfdS" ["YfdS"] "MRMNVFEMEGFLRGKCVPRDLKVNETNAEYLVRKFDALEAKCAALENKIIPVSAELPPANESVLLFDANGEGWLIGWRSLWYTWGQKETGEWQWTFQVGDLENVNITHWAVMPKAPEAGA" [] [] 0 [] {} 0 "G7232-MONOMER" "CPS-53 (KpLE1) prophage; protein YfdT" ["YfdT"] "MTTFTNKELIKEIKERISSLEVRDDIERRAYEIALVSLEVEPDEREAYELFMEKRFGDLVDRRRAKNGDNEYMAWDMTLGWIIWQQRAGIHFSTMSQQEVK" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7233-MONOMER" "tripartite efflux pump membrane fusion protein EmrK" ["EmrK"] "MEQINSNKKHSNRRKYFSLLAVVLFIAFSGAYAYWSMELEDMISTDDAYVTGNADPISAQVSGSVTVVNHKDTNYVRQGDILVSLDKTDATIALNKAKNNLANIVRQTNKLYLQDKQYSAEVASARIQYQQSLEDYNRRVPLAKQGVISKETLEHTKDTLISSKAALNAAIQAYKANKALVMNTPLNRQPQVVEAADATKEAWLALKRTDIKSPVTGYIAQRSVQVGETVSPGQSLMAVVPARQMWVNANFKETQLTDVRIGQSVNIISDLYGENVVFHGRVTGINMGTGNAFSLLPAQNATGNWIKIVQRVPVEVSLDPKELMEHPLRIGLSMTATIDTKNEDIAEMPELASTVTSMPAYTSKALVIDTSPIEKEISNIISHNGQL" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 +"G7233-MONOMER" "tripartite efflux pump membrane fusion protein EmrK" ["EmrK"] "MEQINSNKKHSNRRKYFSLLAVVLFIAFSGAYAYWSMELEDMISTDDAYVTGNADPISAQVSGSVTVVNHKDTNYVRQGDILVSLDKTDATIALNKAKNNLANIVRQTNKLYLQDKQYSAEVASARIQYQQSLEDYNRRVPLAKQGVISKETLEHTKDTLISSKAALNAAIQAYKANKALVMNTPLNRQPQVVEAADATKEAWLALKRTDIKSPVTGYIAQRSVQVGETVSPGQSLMAVVPARQMWVNANFKETQLTDVRIGQSVNIISDLYGENVVFHGRVTGINMGTGNAFSLLPAQNATGNWIKIVQRVPVEVSLDPKELMEHPLRIGLSMTATIDTKNEDIAEMPELASTVTSMPAYTSKALVIDTSPIEKEISNIISHNGQL" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "G7234-MONOMER" "acetyl-CoA:oxalate CoA-transferase" ["YfdE"] "MTNNESKGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHGDDTRTFGPYVDGQSLYYSFINHGKESVVLDLKNDHDKSIFINMLKQADVLAENFRPGTMEKLGFSWETLQEINPRLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYPDAPPVRVGTSLADLCGGVYLFSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMAYIATGKSPQRLGNRHPYMAPFDVFNTQDKPITICCGNDKLFSALCQALELTELVNDPRFSSNILRVQNQAILKQYIERTLKTQAAEVWLARIHEVGVPVAPLLSVAEAIKLPQTQARNMLIEAGGIMMPGNPIKISGCADPHVMPGAATLDQHGEQIRQEFSS" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7236-MONOMER" "oxalyl-CoA decarboxylase" ["YfdU", "Oxc"] "MSDQLQMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATMEKDEALTTIVKVENPSPALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTHPLSAAAARSFALANADVVMLVGARLNWLLAHGKKGWAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELKQNTFTTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLRENQDIYLVNEGANTLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVTSGSPVVAIEGDSAFGFSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAPSPTDLLHHARYDKLMDAFRGVGYNVTTTDELRHALTTGIQSRKPTIINVVIDPAAGTESGHITKLNPKQVAGN" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "G7237-MONOMER" "formyl-CoA transferase" ["YfdW", "Frc"] "MSTPLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSIKGFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPPLVSAAALGDSNTGMHLLIGLLAALLHREKTGRGQRVTMSMQDAVLNLCRVKLRDQQRLDKLGYLEEYPQYPNGTFGDAVPRGGNAGGGGQPGWILKCKGWETDPNAYIYFTIQEQNWENTCKAIGKPEWITDPAYSTAHARQPHIFDIFAEIEKYTVTIDKHEAVAYLTQFDIPCAPVLSMKEISLDPSLRQSGSVVEVEQPLRGKYLTVGCPMKFSAFTPDIKAAPLLGEHTAAVLQELGYSDDEIAAMKQNHAI" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7238-MONOMER" "protein YfdX" ["YfdX"] "MKRLIMATMVTAILASSTVWAADNAPVAAQQQTQQVQQTQKTAAAAERISEQGLYAMRDVQVARLALFHGDPEKAKELTNEASALLSDDSTEWAKFAKPGKKTNLNDDQYIVINASVGISESYVATPEKEAAIKIANEKMAKGDKKGAMEELRLAGVGVMENQYLMPLKQTRNALADAQKLLDKKQYYEANLALKGAEDGIIVDSEALFVN" [] ["CCO-PERI-BAC"] 0 [] {} 0 -"G7239-MONOMER" "colanic acid synthesis putative lipoprotein YpdI" ["YpdI"] "MKVNLILFSLFLLVSIMACNVFAFSISGGGSERSYKETEKTSAMTTTHSTKLQPSQAILFKMREDAPPLNLTEEMPPPFPTKANYLIHPVR" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 0 -"G7240-MONOMER" "DUF2545 domain-containing protein YfdY" ["YfdY"] "MINLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYYFTMWLTGGNELVTGIFMFLAPACGLMIRFMVGYGRR" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7239-MONOMER" "colanic acid synthesis putative lipoprotein YpdI" ["YpdI"] "MKVNLILFSLFLLVSIMACNVFAFSISGGGSERSYKETEKTSAMTTTHSTKLQPSQAILFKMREDAPPLNLTEEMPPPFPTKANYLIHPVR" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 +"G7240-MONOMER" "DUF2545 domain-containing protein YfdY" ["YfdY"] "MINLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYYFTMWLTGGNELVTGIFMFLAPACGLMIRFMVGYGRR" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7242-MONOMER" "glutamate—pyruvate aminotransferase AlaC" ["YfdZ", "AlaC"] "MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCTVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVEIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDVAVEFFTLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRADGLLPASSKHIHENAE" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7243-MONOMER" "sensor histidine kinase PyrS" ["YpdA", "PyrS"] "MHEIFNMLLAVFDRAALMLICLFFLIRIRLFRELLHKSAHSPKELLAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMSGGILFGPWVGIITGVIAGIHRYLIDIGGVTAIPCFITSILAGCISGWINLKIPKAQRWRVGILGGMLCETLTMILVIVWAPTTALGIDIVSKIGIPMILGSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLPLFRHVNSESLRKVCEIIRDDIHADAVAITNTDHVLAYVGVGEHNYQNGDDFISPTTRQAMNYGKIIIKNNDEAHRTPEIHSMLVIPLWEKGVVTGTLKIYYCHAHQITSSLQEMAVGLSQIISTQLEVSRAEQLREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNIELKDDEQIDIKKELYQIKDYIAIEQARFGDKLTVIYDIDEEVNCCIPSLLIQPLVENAIVHGIQPCKGKGVVTISVAECGNRVRIAVRDTGHGIDPKVIERVEANEMPGNKIGLLNVHHRVKLLYGEGLHIRRLEPGTEIAFYIPNQRTPVASQATLLL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7244-MONOMER" "DNA-binding transcriptional activator PyrR" ["YpdB"] "MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRITGMLQKLEAAWQQQQTSSTPAATVTRENDTINLVKDERIIVTPINDIYYAEAHEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYILRLKDLDFEVPVSRSKVKEFRQLMHL" [] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -2706,7 +2706,7 @@ "G7246-MONOMER" "putative PTS multiphosphoryl transfer protein FryA" ["FryA", "YpdD", "TTP", "triphosphoryl transfer protein"] "MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEITFINHRQNAKADAKSSLALIGTGTLFNDSCSLNISGSDEEQARRVLEEYIQVRFIDSDSVQPTQAELTAHPLPRSLSRLNPDLLYGNVLASGVGVGTLTLLQSDSLDSYRAIPASAQDSTRLEHSLATLAEQLNQQLRERDGESKTILSAHLSLIQDDEFAGNIRRLMTEQHQGLGAAIISNMEQVCAKLSASASDYLRERVSDIRDISEQLLHITWPELKPRNKLVLEKPTILVAEDLTPSQFLSLDLKNLAGMILEKTGRTSHTLILARASAIPVLSGLPLDAIARYAGQPAVLDAQCGVLAINPNDAVSGYYQVAQTLADKRQKQQAQAAAQLAYSRDNKRIDIAANIGTALEAPGAFANGAEGVGLFRTEMLYMDRDSAPDEQEQFEAYQQVLLAAGDKPIIFRTMDIGGDKSIPYLNIPQEENPFLGYRAVRIYPEFAGLFRTQLRAILRAASFGNAQLMIPMVHSLDQILWVKGEIQKAIVELKRDGLRHAETITLGIMVEVPSVCYIIDHFCDEVDFFSIGSNDMTQYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVTTAHQRGKWVGICGELGGESRYLPLLLGLGLDELSMSSPRIPAVKSQLRQLDSEACRELARQACECRSAQEIEALLTAFTPEEDVRPLLALENIFVDQDFSNKEQAIQFLCGNLGVNGRTEHPFELEEDVWQREEIVTTGVGFGVAIPHTKSQWIRHSSISIARLAKPIGWQSEMGEVELVIMLTLGANEGMNHVKVFSQLARKLVNKNFRQSLFAAQDAQSILTLLETELTF" [] ["CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "G7247-MONOMER" "aminopeptidase YpdE" ["YpdE", "broad-specificity exoaminopeptidase"] "MDLSLLKALSEADAIASSEQEVRQILLEEADRLQKEVRFDGLGSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLDGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMGKAFDDRLGCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPMLVLSDKSLIAPPKLTAWVETVAAEIGVPLQADMFSNGGTDGGAVHLTGTGVPTVVMGPATRHGHCAASIADCRDILQMQQLLSALIQRLTRETVVQLTDFR" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "G7248-MONOMER" "aminopeptidase YpdF" ["YpdF"] "MTLLASLRDWLKAQQLDAVLLSSRQNKQPHLGISTGSGYVVISRESAHILVDSRYYVEVEARAQGYQLHLLDATNTLTTIVNQIIADEQLQTLGFEGQQVSWETAHRWQSELNAKLVSATPDVLRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKASFDTIVASGWRGALPHGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHLLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDYFGHNTGHAIGIEVHEDPRFSPRDTTTLQPGMLLTVEPGIYLPGQGGVRIEDVVLVTPQGAEVLYAMPKTVLLTGEA" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G7250-MONOMER" "putative PTS enzyme IIB component FryB" ["YpdH", "FryB", "Enzyme IIBFry", "EIIBFry"] "MSKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAVTPEDNERFESRDVYEITLQDAIKNAAGIIKEIEEMIASEQQ" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 +"G7250-MONOMER" "putative PTS enzyme IIB component FryB" ["YpdH", "FryB", "Enzyme IIBFry", "EIIBFry"] "MSKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAVTPEDNERFESRDVYEITLQDAIKNAAGIIKEIEEMIASEQQ" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7251-MONOMER" "putative transport protein YfeO" ["YfeO"] "MLHPRARTMLLLSLPAVAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLWIIGVLTLTGIAVGLVIRFSQGHAGPDPACEPLIGAPVPPSALPGLIVALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLPRVNRMEWTILASAGTIGALFGTPVAAALIFSQTLNGSSEVPLWDRLFAPLMAAAAGALTTGLFFHPHFSLPIAHYGQMEMTDILSGAIVAAIAIAAGMVAVWCLPRLHAMMHQMKNPVLVLGIGGFILGILGVIGGPVSLFKGLDEMQQMVANQAFSTSDYFLLAVIKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHEHVPAVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPNTTLLPLLCIVMLPAWLLLAGKPMMMVNRPKQQPPHDNV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7252-MONOMER" "DUF2502 domain-containing protein YpeC" ["YpeC"] "MFRSLFLAAALMAFTPLAANAGEITLLPSIKLQIGDRDHYGNYWDGGHWRDRDYWHRNYEWRKNRWWRHDNGYHRGWDKRKAYERGYREGWRDRDDHRGKGRGHGHRH" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7255-MONOMER" "putative IS186/IS421 transposase" ["InsL3"] "MNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLLRLGLAYGPGGMSLREVTAWAQLHDVATLSDVALLKRLRNAADWFGILAAQTLAVRAAVTGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELTDSRDAERLDRFAQTADEIRIADRGFGSRPECIRSLAFGEADYIVRVHWRGLRWLTAEGMRFDMMGFLRGLDCGKNGETTVMIGNSGNKKAGAPFPARLIAVSLPPEKALISKTRLLSENRRKGRVVQAETLEAAGHVLLLTSLPEDEYSAEQVADCYRLRWQIELAFKRLKSLLHLDALRAKEPELAKAWIFANLLAAFLIDDIIQPSLDFPPRSAGSEKKN" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -2717,10 +2717,10 @@ "G7261-MONOMER" "PF05406 family protein YfeS" ["YfeS"] "MKKRFIYHDEKSNKFWWIDYEGDSLAVNYGKVGSIGKFQTKEFDNEEQCLKEASKLIAAKMKKGYQEDPKFNFMDRYYFDDEEIGLHVKTSHPNFQCHFTDPLYMCCWDEESPFGSDEGADALNVLENSLRKEPDLDCADFPQMLIETMWGMKYIAMDSILEEDVRAQLLVDEMSTIQSNMITYATAFGQIKVMGKISHKLKKMGLNALARHQLTAKILQWGDGQDSPILQKMIDDLTAFPHEN" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7262-MONOMER" "DNA-binding transcriptional dual regulator MurR" ["YfeT", "MurR"] "MLYLTKISNAGSEFTENEQKIADFLQANVSELQSVSSRQMAKQLGISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNATALHLHSSITSDDSLEVIARKLNREKELALEQTCALLDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLTDSPLRRLAHFTLDTVSGETEWRSSSMSTRTAQNSVTDLLFVGLVQLNDVESLKMIQRSSELTQRLK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7263-MONOMER" "N-acetylmuramic acid 6-phosphate etherase" ["YfeU", "MurQ"] "MQFEKMITEGSNTASAEIDRVSTLEMCRIINDEDKTVPLAVERVLPDIAAAIDVIHAQVSGGGRLIYLGAGTSGRLGILDASECPPTYGVKPGLVVGLIAGGEYAIQHAVEGAEDSREGGVNDLKNINLTAQDVVVGIAASGRTPYVIAGLEYARQLGCRTVGISCNPGSAVSTTAEFAITPIVGAEVVTGSSRMKAGTAQKLVLNMLSTGLMIKSGKVFGNLMVDVVATNEKLHVRQVNIVKNATGCSAEQAEAALIACERNCKTAIVMVLKNLDAAEAKKRLDQHGGFIRQVLDKE" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G7265-MONOMER" "penicillin binding protein 4B" ["YfeW", "PBP4B"] "MKRTMLYLSLLAVSCSVSAAKYPVLTESSPEKAGFNVERLNQMDRWISQQVDVGYPSVNLLIIKDNQIVYRKAWGAAKKYDGSVLMEQPVKATTGTLYDLASNTKMYATNFALQKLMSEGKLHPDDRIAKYIPGFADSPNDTIKGKNTLRISDLLHHSGGFPADPQYPNKAVAGALYSQDKGQTLEMIKRTPLEYQPGSKHIYSDVDYMLLGFIVESVTGQPLDRYVEESIYRPLGLTHTVFNPLLKGFKPQQIAATELNGNTRDGVIHFPNIRTSTLWGQVHDEKAFYSMGGVSGHAGLFSNTGDIAVLMQTMLNGGGYGDVQLFNAETVKMFTTSSKEDATFGLGWRVNGNATMTPTFGTLASPQTYGHTGWTGTVTVIDPVNHMTIVMLSNKPHSPVADPQKNPNMFESGQLPIATYGWVVDQVYAALKQK" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 +"G7265-MONOMER" "penicillin binding protein 4B" ["YfeW", "PBP4B"] "MKRTMLYLSLLAVSCSVSAAKYPVLTESSPEKAGFNVERLNQMDRWISQQVDVGYPSVNLLIIKDNQIVYRKAWGAAKKYDGSVLMEQPVKATTGTLYDLASNTKMYATNFALQKLMSEGKLHPDDRIAKYIPGFADSPNDTIKGKNTLRISDLLHHSGGFPADPQYPNKAVAGALYSQDKGQTLEMIKRTPLEYQPGSKHIYSDVDYMLLGFIVESVTGQPLDRYVEESIYRPLGLTHTVFNPLLKGFKPQQIAATELNGNTRDGVIHFPNIRTSTLWGQVHDEKAFYSMGGVSGHAGLFSNTGDIAVLMQTMLNGGGYGDVQLFNAETVKMFTTSSKEDATFGLGWRVNGNATMTPTFGTLASPQTYGHTGWTGTVTVIDPVNHMTIVMLSNKPHSPVADPQKNPNMFESGQLPIATYGWVVDQVYAALKQK" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 "G7266-MONOMER" "porphyrinogen peroxidase" ["YfeX", "dye-decolorizing peroxidase"] "MSQVQSGILPEHCRAAIWIEANVKGEVDALRAASKTFADKLATFEAKFPDAHLGAVVAFGNNTWRALSGGVGAEELKDFPGYGKGLAPTTQFDVLIHILSLRHDVNFSVAQAAMEAFGDCIEVKEEIHGFRWVEERDLSGFVDGTENPAGEETRREVAVIKDGVDAGGSYVFVQRWEHNLKQLNRMSVHDQEMVIGRTKEANEEIDGDERPETSHLTRVDLKEDGKGLKIVRQSLPYGTASGTHGLYFCAYCARLHNIEQQLLSMFGDTDGKRDAMLRFTKPVTGGYYFAPSLDKLMAL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"PROTOHEME": 1} 0 "G7267-MONOMER" "DUF1131 domain-containing lipoprotein YfeY" ["YfeY"] "MKSLRLMLCAMPLMLTGCSTMSSVNWSAANPWNWFGSSTKVSEQGVGELTASTPLQEQAIADALDGDYRLRSGMKTANGNVVRFFEVMKGDNVAMVINGDQGTISRIDVLDSDIPADTGVKIGTPFSDLYSKAFGNCQKADGDDNRAVECKAEGSQHISYQFSGEWRGPEGLMPSDDTLKNWKVSKIIWRR" [] [] 0 [] {} 0 -"G7268-MONOMER" "putative inner membrane protein" ["YfeZ"] "MKSTEFHPVHYDAHGRLRLPLLFWLVLLLQARTWVLFVIAGASREQGTALLNLFYPDHDNFWLGLIPGIPAVLAFLLSGRRATFPRTWRVLYFLLLLAQVVLLCWQPWLWLNGESVSGIGLALVVADIVALIWLLTNRRLRACFYEVKE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7268-MONOMER" "putative inner membrane protein" ["YfeZ"] "MKSTEFHPVHYDAHGRLRLPLLFWLVLLLQARTWVLFVIAGASREQGTALLNLFYPDHDNFWLGLIPGIPAVLAFLLSGRRATFPRTWRVLYFLLLLAQVVLLCWQPWLWLNGESVSGIGLALVVADIVALIWLLTNRRLRACFYEVKE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7269-MONOMER" "putative acetyltransferase YpeA" ["YpeA", "putative acyltransferase with acyl-CoA N-acyltransferase domain"] "MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSLFLVAEVNGDVVGTVMGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDMVLGMYERLGYEHADVLSLGKRLIEDEEY" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7270-MONOMER" "putative structural protein, ethanolamine utilization microcompartment" ["YffI", "EutK"] "MINALGLLEVDGMVAAIDAADAMLKAANVRLLSHEVLDPGRLTLVVEGDLAACRAALDAGCAAAMRTGRVISRKEIGRPDDDTQWLVTGFNRQPKQPVREPDAPVIVAESADELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKRSSRYRLKPH" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7271-MONOMER" "putative structural protein, ethanolamine utilization microcompartment" ["YffJ", "EutL"] "MPALDLIRPSVTAMRVIASVNADFARELKLPPHIRSLGLISADSDDVTYIAADEATKQAMVEVVYGRSLYAGAAHGPSPTAGEVLIMLGGPNPAEVRAGLDAMIAHIENGAAFQWANDAQDTAFLAHVVSRTGSYLSSTAGITLGDPMAYLVAPPLEATYGIDAALKSADVQLATYVPPPSETNYSAAFLTGSQAACKAACNAFTDAVLEIARNPIQRA" [] [] 0 [] {"ZN+2": 1} 1 @@ -2751,42 +2751,42 @@ "G7298-MONOMER" "uncharacterized protein YpfJ" ["YpfJ"] "MRWQGRRESDNVEDRRNSSGGPSMGGPGFRLPSGKGGLILLIVVLVAGYYGVDLTGLMTGQPVSQQQSTRSISPNEDEAAKFTSVILATTEDTWGQQFEKMGKTYQQPKLVMYRGMTRTGCGAGQSIMGPFYCPADGTVYIDLSFYDDMKDKLGADGDFAQGYVIAHEVGHHVQKLLGIEPKVRQLQQNATQAEVNRLSVRMELQADCFAGVWGHSMQQQGVLETGDLEEALNAAQAIGDDRLQQQSQGRVVPDSFTHGTSQQRYSWFKRGFDSGDPAQCNTFGKSI" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7307-MONOMER" "putative hydrogenase 4 assembly protein" ["HyfJ"] "MTEECGEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIVQEPAIYLMARKIA" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "G7308-MONOMER" "DNA-binding transcriptional activator HyfR" ["HyfR"] "MAMSDEAMFAPPQGITIEAVNGMLAERLAQKHGKASLLRAFIPLPPPFSPVQLIELHVLKSNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7310-MONOMER" "putative transporter YfgO" ["YfgO", "PerM"] "MLEMLMQWYRRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQSIGCSRRWATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRSRMLTMGDSVVKISLASLVGLLTIAVYLVLVPLMVFFLLKDKEQMLNAVRRVLPRNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDGQIAQE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7310-MONOMER" "putative transporter YfgO" ["YfgO", "PerM"] "MLEMLMQWYRRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQSIGCSRRWATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRSRMLTMGDSVVKISLASLVGLLTIAVYLVLVPLMVFFLLKDKEQMLNAVRRVLPRNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDGQIAQE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7311-MONOMER" "β-barrel assembly-enhancing protease" ["BepA", "YfgC"] "MFRQLKKNLVATLIAAMTIGQVAPAFADSADTLPDMGTSAGSTLSIGQEMQMGDYYVRQLRGSAPLINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINNDEINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRSAPLTWVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSGFDPQAMPTFLEKLLDQARYSSRPPEILLTHPLPESRLADARNRANQMRPMVVQSSEDFYLAKARTLGMYNSGRNQLTSDLLDEWAKGNVRQQRAAQYGRALQAMEANKYDEARKTLQPLLAAEPGNAWYLDLATDIDLGQNKANEAINRLKNARDLRTNPVLQLNLANAYLQGGQPQEAANILNRYTFNNKDDSNGWDLLAQAEAALNNRDQELAARAEGYALAGRLDQAISLLSSASSQVKLGSLQQARYDARIDQLRQLQERFKPYTKM" ["CCO-MEMBRANE"] ["CCO-PERI-BAC", "CCO-MEMBRANE"] 0 [] {"ZN+2": 1} 0 "G7312-MONOMER" "putative oxidoreductase YfgD" ["YfgD"] "MTKQVKIYHNPRCSKSRETLNLLKENGVEPEVVLYLETPADAATLRDLLKILGMNSARELMRQKEDLYKELNLADSSLSEEALIQAMVDNPKLMERPIVVANGKARIGRPPEQVLEIVG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7313-MONOMER" "inibitor of reinitiation of DNA replication" ["IdaB", "Hda", "YfgE", "regulator of DnaA that prevents premature reinitiation of DNA replication"] "MNTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILKL" ["CCO-CYTOSOL", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL", "CCO-MEMBRANE"] 0 [] {} 1 -"G7314-MONOMER" "cyclic di-GMP phosphodiesterase PdeF" ["PdeF", "YfgF"] "MKLNATYIKIRDKWWGLPLFLPSLILPIFAHINTFAHISSGEVFLFYLPLALMISMMMFFSWAALPGIALGIFVRKYAELGFYETLSLTANFIIIIILCWGGYRVFTPRRNNVSHGDTRLISQRIFWQIVFPATLFLILFQFAAFVGLLASRENLVGVMPFNLGTLINYQALLVGNLIGVPLCYFIIRVVRNPFYLRSYYSQLKQQVDAKVTKKEFALWLLALGALLLLLCMPLNEKSTIFSTNYTLSLLLPLMMWGAMRYGYKLISLLWAVVLMISIHSYQNYIPIYPGYTTQLTITSSSYLVFSFIVNYMAVLATRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDAPWSALCYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQERITALDSHLKQFRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAPENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGDVYHEILLRMKGENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAHRFAINLSPTSVCQARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTGYASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMLVVAEYVENEEIREAVLSLGIDYMQGYLIGKPQPLIDTLNEIEPIRESA" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"G7315-MONOMER" "nickel/cobalt stress response protein YfgG" ["YfgG"] "MSQATSMRKRHRFNSRMTRIVLLISFIFFFGRFIYSSVGAWQHHQSKKEAQQSTLSVESPVQR" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 -"G7316-MONOMER" "lipoprotein YfgH" ["YfgH"] "MMKFKKCLLPVAMLASFTLAGCQSNADDHAADVYQTDQLNTKQETKTVNIISILPAKVAVDNSQNKRNAQAFGALIGAVAGGVIGHNVGSGSNSGTTAGAVGGGAVGAAAGSMVNDKTLVEGVSLTYKEGTKVYTSTQVGKECQFTTGLAVVITTTYNETRIQPNTKCPEKS" ["CCO-OUTER-MEM"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"G7313-MONOMER" "inibitor of reinitiation of DNA replication" ["IdaB", "Hda", "YfgE", "regulator of DnaA that prevents premature reinitiation of DNA replication"] "MNTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILKL" ["CCO-CYTOSOL", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 +"G7314-MONOMER" "cyclic di-GMP phosphodiesterase PdeF" ["PdeF", "YfgF"] "MKLNATYIKIRDKWWGLPLFLPSLILPIFAHINTFAHISSGEVFLFYLPLALMISMMMFFSWAALPGIALGIFVRKYAELGFYETLSLTANFIIIIILCWGGYRVFTPRRNNVSHGDTRLISQRIFWQIVFPATLFLILFQFAAFVGLLASRENLVGVMPFNLGTLINYQALLVGNLIGVPLCYFIIRVVRNPFYLRSYYSQLKQQVDAKVTKKEFALWLLALGALLLLLCMPLNEKSTIFSTNYTLSLLLPLMMWGAMRYGYKLISLLWAVVLMISIHSYQNYIPIYPGYTTQLTITSSSYLVFSFIVNYMAVLATRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDAPWSALCYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQERITALDSHLKQFRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAPENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGDVYHEILLRMKGENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAHRFAINLSPTSVCQARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTGYASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMLVVAEYVENEEIREAVLSLGIDYMQGYLIGKPQPLIDTLNEIEPIRESA" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"G7315-MONOMER" "Ni/Co stress response protein YfgG" ["YfgG", "nickel/cobalt stress response protein YfgG"] "MSQATSMRKRHRFNSRMTRIVLLISFIFFFGRFIYSSVGAWQHHQSKKEAQQSTLSVESPVQR" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7316-MONOMER" "lipoprotein YfgH" ["YfgH"] "MMKFKKCLLPVAMLASFTLAGCQSNADDHAADVYQTDQLNTKQETKTVNIISILPAKVAVDNSQNKRNAQAFGALIGAVAGGVIGHNVGSGSNSGTTAGAVGGGAVGAAAGSMVNDKTLVEGVSLTYKEGTKVYTSTQVGKECQFTTGLAVVITTTYNETRIQPNTKCPEKS" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7317-MONOMER" "nalidixic acid resistance protein YfgI" ["YfgI", "conserved protein, involved in DNA damage response"] "MKKVFLCAILASLSYPAIASSLQDQLSAVAEAEQQGKNEEQRQHDEWVAERNREIQQEKQRRANAQAAANKRAATAAANKKARQDKLDAEASADKKRDQSYEDELRSLEIQKQKLALAKEEARVKRENEFIDQELKHKAAQTDVVQSEADANRNMTEGGRDLMKSVGKAEENKSDSWFN" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7318-MONOMER" "zinc ribbon domain-containing protein YfgJ" ["YfgJ"] "MELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGHGLISKKRVEFVLA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7319-MONOMER" "50S ribosomal subunit stability factor" ["Der", "YfgK", "EngA"] "MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQEEVDEDAEYWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANKRNTLTPTQMRKRKRLMKHIKKNK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7320-MONOMER" "outer membrane protein assembly factor BamB" ["YfgL"] "MQLRKLLLPGLLSVTLLSGCSLFNSEEDVVKMSPLPTVENQFTPTTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSITR" ["CCO-MEMBRANE", "CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 -"G7321-MONOMER" "ancillary SecYEG translocon subunit" ["YfgM"] "MEIYENENDQVEAVKRFFAENGKALAVGVILGVGALIGWRYWNSHQVDSARSASLAYQNAVTAVSEGKPDSIPAAEKFAAENKNTYGALASLELAQQFVDKNELEKAAAQLQQGLADTSDENLKAVINLRLARVQVQLKQADAALKTLDTIKGEGWAAIVADLRGEALLSKGDKQGARSAWEAGVKSDVTPALSEMMQMKINNLSI" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"G7320-MONOMER" "outer membrane protein assembly factor BamB" ["YfgL"] "MQLRKLLLPGLLSVTLLSGCSLFNSEEDVVKMSPLPTVENQFTPTTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSITR" ["CCO-MEMBRANE", "CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 1 +"G7321-MONOMER" "ancillary SecYEG translocon subunit" ["YfgM"] "MEIYENENDQVEAVKRFFAENGKALAVGVILGVGALIGWRYWNSHQVDSARSASLAYQNAVTAVSEGKPDSIPAAEKFAAENKNTYGALASLELAQQFVDKNELEKAAAQLQQGLADTSDENLKAVINLRLARVQVQLKQADAALKTLDTIKGEGWAAIVADLRGEALLSKGDKQGARSAWEAGVKSDVTPALSEMMQMKINNLSI" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7322-MONOMER" "peptidoglycan glycosyltransferase PbpC" ["YfgN", "PbpC", "PBP1C"] "MPRLLTKRGCWITLAAAPFLLFLAAWGADKLWPLPLHEVNPARVVVAQDGTPLWRFADADGIWRYPVTIEDVSPRYLEALINYEDRWFWKHPGVNPFSVARAAWQDLTSGRVISGGSTLTMQVARLLDPHPKTFGGKIRQLWRALQLEWHLSKREILTLYLNRAPFGGTLQGIGAASWAYLGKSPANLSYSEAAMLAVLPQAPSRLRPDRWPERAEAARNKVLERMAVQGVWSREQVKESREEPIWLAPRQMPQLAPLFSRMMLGKSKSDKITTTLDAGLQRRLEELAQNWKGRLPPRSSLAMIVVDHTDMRVRGWVGSVDLNDDSRFGHVDMVNSIRSPGSVLKPFVYGLALDEGLIHPASLLQDVPRRTGDYRPGNFDSGFHGPISMSEALVRSLNLPAVQVLEAYGPKRFAAKLRNVGLPLYLPNGAAPNLSLILGGAGAKLEDMAAAYTAFARHGKAGKLRLQPDDPLLERPLMSSGAAWIIRRIMADEAQPLPDSALPRVAPLAWKTGTSYGYRDAWAIGVNARYVIGIWTGRPDGTPVVGQFGFASAVPLLNQVNNILLSRSANLPEDPRPNSVTRGVICWPGGQSLPEGDGNCRRRLATWLLDGSQPPTLLLPEQEGINGIRFPIWLDENGKRVAADCPQARQEMINVWPLPLEPWLPASERRAVRLPPASTSCPPYGHDAQLPLQLTGVRDGAIIKRLPGAAEATLPLQSSGGAGERWWFLNGEPLTERGRNVTLHLTDKGDYQLLVMDDVGQIATVKFVMQ" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7323-MONOMER" "α2-macroglobulin" ["YfhM", "ECAM"] "MKKLRVAACMLMLALAGCDNNDNAPTAVKKDAPSEVTKAASSENASSAKLSVPERQKLAQQSAGKVLTLLDLSEVQLDGAATLVLTFSIPLDPDQDFSRVIHVVDKKSGKVDGAWELSDNLKELRLRHLEPKRDLIVTIGKEVKALNNATFSKDYEKTITTRDIQPSVGFASRGSLLPGKVVEGLPVMALNVNNVDVNFFRVKPESLPAFISQWEYRNSLANWQSDKLLQMADLVYTGRFDLNPARNTREKLLLPLGDIKPLQQAGVYLAVMNQAGRYDYSNPATLFTLSDIGVSAHRYHNRLDIFTQSLENGAAQQGIEVSLLNEKGQTLTQATSDAQGHVQLENDKNAALLLARKDGQTTLLDLKLPALDLAEFNIAGAPGYSKQFFMFGPRDLYRPGETVILNGLLRDADGKALPNQPIKLDVIKPDGQVLRSVVSQPENGLYHFTWPLDSNAATGMWHIRANTGDNQYRMWDFHVEDFMPERMALNLTGEKTPLTPKDEVKFSVVGYYLYGAPANGNTLQGQLFLRPLREAVSALPGFEFGDIAAENLSRTLDEVQLTLDDKGRGEVSTESQWKETHSPLQVIFQGSLLESGGRPVTRRAEQAIWPADALPGIRPQFASKSVYDYRTDSTVKQPIVDEGSNAAFDIVYSDAQGVKKAVSGLQVRLIRERRDYYWNWSEDEGWQSQFDQKDLIENEQTLDLKADETGKVSFPVEWGAYRLEVKAPNEAVSSVRFWAGYSWQDNSDGSGAVRPDRVTLKLDKASYRPGDTIKLHIAAPTAGKGYAMVESSEGPLWWQEIDVRAQGLDLTIPVDKTWNRHDLYLSTLVVRPGDKSRSATPKRAVGVLHLPLGDENRRLDLALETPAKMRPNQPLTVKIKASTKNGEKPKQVNVLVSAVDSGVLNITDYVTPDPWQAFFGQKRYGADIYDIYGQVIEGQGRLAALRFGGDGDELKRGGKPPVNHVNIVVQQALPVTLNEQGEGSVTLPIGDFNGELRVMAQAWTADDFGSNESKVIVAAPVIAELNMPRFMASGDTSRLTLDITNLTDKPQKLNVALTASGLLELVSDSPAAVELAPGVRTTLFIPVRALPGYGDGEIQATISGLALPGETVADQHKQWKIGVRPAFPAQTVNYGTALQPGETWAIPADGLQNFSPVTLEGQLLLSGKPPLNIARYIKELKAYPYGCLEQTASGLFPSLYTNAAQLQALGIKGDSDEKRRASVDIGISRLLQMQRDNGGFALWDKNGDEEYWLTAYVMDFLVRAGEQGYSVPTDAINRGNERLLRYLQDPGMMSIPYADNLKASKFAVQSYAALVLARQQKAPLGALREIWEHRADAASGLPLLQLGVALKTMGDATRGEEAIALALKTPRNSDERIWLGDYGSSLRDNALMLSLLEENKLLPDEQYTLLNTLSQQAFGERWLSTQESNALFLAARTIQDLPGKWQAQTSFSAEQLTGEKAQNSNLNSDQLVTLQVSNSGDQPLWLRMDASGYPQSAPLPANNVLQIERHILGTDGKSKSLDSLRSGDLVLVWLQVKASNSVPDALVVDLLPAGLELENQNLANGSASLEQSGGEVQNLLNQMQQASIKHIEFRDDRFVAAVAVDEYQPVTLVYLARAVTPGTYQVPQPMVESMYVPQWRATGAAEDLLIVRP" [] ["CCO-EXTRACELLULAR", "CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7324-MONOMER" "scaffold protein for iron-sulfur cluster assembly" ["NifU", "YfhN", "IscU"] "MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKREAK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 +"G7323-MONOMER" "α2-macroglobulin" ["YfhM", "ECAM"] "MKKLRVAACMLMLALAGCDNNDNAPTAVKKDAPSEVTKAASSENASSAKLSVPERQKLAQQSAGKVLTLLDLSEVQLDGAATLVLTFSIPLDPDQDFSRVIHVVDKKSGKVDGAWELSDNLKELRLRHLEPKRDLIVTIGKEVKALNNATFSKDYEKTITTRDIQPSVGFASRGSLLPGKVVEGLPVMALNVNNVDVNFFRVKPESLPAFISQWEYRNSLANWQSDKLLQMADLVYTGRFDLNPARNTREKLLLPLGDIKPLQQAGVYLAVMNQAGRYDYSNPATLFTLSDIGVSAHRYHNRLDIFTQSLENGAAQQGIEVSLLNEKGQTLTQATSDAQGHVQLENDKNAALLLARKDGQTTLLDLKLPALDLAEFNIAGAPGYSKQFFMFGPRDLYRPGETVILNGLLRDADGKALPNQPIKLDVIKPDGQVLRSVVSQPENGLYHFTWPLDSNAATGMWHIRANTGDNQYRMWDFHVEDFMPERMALNLTGEKTPLTPKDEVKFSVVGYYLYGAPANGNTLQGQLFLRPLREAVSALPGFEFGDIAAENLSRTLDEVQLTLDDKGRGEVSTESQWKETHSPLQVIFQGSLLESGGRPVTRRAEQAIWPADALPGIRPQFASKSVYDYRTDSTVKQPIVDEGSNAAFDIVYSDAQGVKKAVSGLQVRLIRERRDYYWNWSEDEGWQSQFDQKDLIENEQTLDLKADETGKVSFPVEWGAYRLEVKAPNEAVSSVRFWAGYSWQDNSDGSGAVRPDRVTLKLDKASYRPGDTIKLHIAAPTAGKGYAMVESSEGPLWWQEIDVRAQGLDLTIPVDKTWNRHDLYLSTLVVRPGDKSRSATPKRAVGVLHLPLGDENRRLDLALETPAKMRPNQPLTVKIKASTKNGEKPKQVNVLVSAVDSGVLNITDYVTPDPWQAFFGQKRYGADIYDIYGQVIEGQGRLAALRFGGDGDELKRGGKPPVNHVNIVVQQALPVTLNEQGEGSVTLPIGDFNGELRVMAQAWTADDFGSNESKVIVAAPVIAELNMPRFMASGDTSRLTLDITNLTDKPQKLNVALTASGLLELVSDSPAAVELAPGVRTTLFIPVRALPGYGDGEIQATISGLALPGETVADQHKQWKIGVRPAFPAQTVNYGTALQPGETWAIPADGLQNFSPVTLEGQLLLSGKPPLNIARYIKELKAYPYGCLEQTASGLFPSLYTNAAQLQALGIKGDSDEKRRASVDIGISRLLQMQRDNGGFALWDKNGDEEYWLTAYVMDFLVRAGEQGYSVPTDAINRGNERLLRYLQDPGMMSIPYADNLKASKFAVQSYAALVLARQQKAPLGALREIWEHRADAASGLPLLQLGVALKTMGDATRGEEAIALALKTPRNSDERIWLGDYGSSLRDNALMLSLLEENKLLPDEQYTLLNTLSQQAFGERWLSTQESNALFLAARTIQDLPGKWQAQTSFSAEQLTGEKAQNSNLNSDQLVTLQVSNSGDQPLWLRMDASGYPQSAPLPANNVLQIERHILGTDGKSKSLDSLRSGDLVLVWLQVKASNSVPDALVVDLLPAGLELENQNLANGSASLEQSGGEVQNLLNQMQQASIKHIEFRDDRFVAAVAVDEYQPVTLVYLARAVTPGTYQVPQPMVESMYVPQWRATGAAEDLLIVRP" [] ["CCO-EXTRACELLULAR", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7324-MONOMER" "scaffold protein for [Fe-S] cluster assembly" ["NifU", "YfhN", "IscU", "scaffold protein for iron-sulfur cluster assembly"] "MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKREAK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "G7325-MONOMER" "cysteine desulfurase IscS" ["NuvC", "YzzO", "YfhO", "IscS"] "MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"CPD-6": 1} 1 "G7326-MONOMER" "DNA-binding transcriptional dual regulator IscR" ["IscR", "YfhP"] "MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQGGDKCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRTRTQDAIDVKLRA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"CPD-6": 1} 1 "G7327-MONOMER" "tRNA Cm32/Um32 methyltransferase" ["YfhQ", "TrmJ", "TrMet(Xm32)"] "MLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNAHIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQNKGNKAE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "G7328-MONOMER" "putative peptidase" ["YfhR"] "MALPVNKRVPKILFILFVVAFCVYLVPRVAINFFYYPDDKIYGPDPWSAESVEFTAKDGTRLQGWFIPSSTGPADNAIATIIHAHGNAGNMSAHWPLVSWLPERNFNVFMFDYRGFGKSKGTPSQAGLLDDTQSAINVVRHRSDVNPQRLVLFGQSIGGANILDVIGRGDREGIRAVILDSTFASYATIANQMIPGSGYLLDESYSGENYIASVSPIPLLLIHGKADHVIPWQHSEKLYSLAKEPKRLILIPDGEHIDAFSDRHGDVYREQMVDFILSALNPQN" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7329-MONOMER" "stationary phase-inducible protein CsiE" ["CsiE"] "MMPTLAPPSVLSAPQRRCQILLTLFQPGLTATMATFSELNGVDDDIASLDISETGREILRYHQLTLTTGYDGSYRVEGTVLNQRLCLFHWLRRGFRLCPSFITSQFTPALKSELKRRGIARNFYDDTNLQALVNLCSRRLQKRFESRDIHFLCLYLQYCLLQHHAGITPQFNPLQRRWAESCLEFQVAQEIGRHWQRRALQPVPPDEPLFMALLFSMLRVPDPLRDAHQRDRQLRQSIKRLVNHFRELGNVRFYDEQGLCDQLYTHLAQALNRSLFAIGIDNTLPEEFARLYPRLVRTTRAALAGFESEYGVHLSDEESGLVAVIFGAWLMQENDLHEKQIILLTGNDSEREAQIEQQLRELTLLPLNIKHMSVKAFLQTGAPRGAALIIAPYTMPLPLFSPPLIYTDLTLTTHQQEQIRKMLESA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7331-MONOMER" "DNA-binding transcriptional dual regulator HcaR" ["PhdR", "HcaR", "YfhT"] "MELRHLRYFVAVAQALNFTRAAEKLHTSQPSLSSQIRDLENCVGVPLLVRDKRKVALTAAGECFLQDALAILEQAENAKLRARKIVQEDRQLTIGFVPSAEVNLLPKVLPMFRLRQPDTLIELVSLITTQQEEKIRRGELDVGLMRHPVYSPEIDYLELFDEPLVVVLPVDHPLAHEKEITAAQLDGVNFVSTDPVYSGSLAPIVKAWFAQENSQPNIVQVATNILVTMNLVGMGLGVTLIPGYMNNFNTGQVVFRPIAGNVPSIALLMAWKKGEMKPALRDFIAIVQERLASVTA" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G7337-MONOMER" "putative inner membrane protein" ["YphA"] "MNTLRYFDFGAARPVLLLIARIAVVLIFIIFGFPKMMGFDGTVQYMASLGAPMPMLAAIIAVVMEVPAAILIVLGFFTRPLAVLFIFYTLGTAVIGHHYWDMTGDAVGPNMINFWKNVSIAGAFLLLAITGPGAISLDRR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7337-MONOMER" "putative inner membrane protein" ["YphA"] "MNTLRYFDFGAARPVLLLIARIAVVLIFIIFGFPKMMGFDGTVQYMASLGAPMPMLAAIIAVVMEVPAAILIVLGFFTRPLAVLFIFYTLGTAVIGHHYWDMTGDAVGPNMINFWKNVSIAGAFLLLAITGPGAISLDRR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7338-MONOMER" "putative aldose 1-epimerase YphB" ["YphB", "putative sulfoquinovose mutarotase YphB"] "MTIYTLSHGSLKLDVSDQGGVIEGFWRDTTPLLRPGKKSGVATDASCFPLVPFANRVSGNRFVWQGREYQLQPNVEWDAHYLHGDGWLGEWQCVSHSDDSLCLVYEHRSGVYHYRVSQAFHLTADTLTVTLSVTNQGAETLPFGTGWHPYFPLSPQTRIQAQASGYWLEREQWLAGEFCEQLPQELDFNQPAPLPRQWVNNGFAGWNGQARIEQPQEGYAIIMETTPPAPCYFIFVSDPAFDKGYAFDFFCLEPMSHAPDDHHRPEGGDLIALAPGESTTSEMSLRVEWL" [] [] 0 [] {} 0 "G7342-MONOMER" "putative ABC transporter periplasmic binding protein YphF" ["YphF"] "MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHVDGLP" [] ["CCO-PERI-BAC"] 0 [] {} 1 -"G7343-MONOMER" "DUF5107 domain-containing protein YphG" ["YphG"] "MTPVKVWQERVEIPTYETGPQDIHPMFLENRVYQGSSGAVYPYGVTDTLSEQKTLKSWQAVWLENDYIKVMILPELGGRVHRAWDKVKQRDFVYHNEVIKPALVGLLGPWISGGIEFNWPQHHRPTTFMPVDFTLEAHEDGAQTVWVGETEPMHGLQVMTGFTLRPDRAALEIASRVYNGNATPRHFLWWANPAVKGGEGHQSVFPPDVTAVFDHGKRAVSAFPIATGTYYKVDYSAGVDISRYKNVPVPTSYMAEKSQYDFVGAWCHDEDGGLLHVANHHIAPGKKQWSWGHSEFGQAWDKSLTDNNGPYIELMTGIFADNQPDFTWLDAYEEKRFEQYFLPYHSLGMVQNASRDAVIKLQRSKRGIEWGLYAISPLNGYRLAIREIGKCNALLDDAVALMPATAIQGVLHGINPERLTIELSDADGNIVLSYQEHQPQALPLPDVAKAPLAAQDITSTDEAWFIGQHLEQYHHASRSPFDYYLRGVALDPLDYRCNLALAMLEYNRADFPQAVAYATQALKRAHALNKNPQCGQASLIRASAYERQGQYQQAEEDFWRAVWSGNSKAGGYYGLARLAARNGNFDAGLDFCQQSLRACPTNQEVLCLHNLLLVLSGRQDNARVQREKLLRDYPLNATLWWLNWFDGRSESALAQWRGLCQGRDVNALMTAGQLINWGMPTLAAEMLNALDCQRTLPLYLQASLLPKAERGELVAKAIDVFPQFVRFPNTLEEVAALESIEECWFARHLLACFYYNKRSYNKAIAFWQRCVEMSPEFADGWRGLAIHAWNKQHDYELAARYLDNAYQLAPQDARLLFERDLLDKLSGATPEKRLARLENNLEIALKRDDMTAELLNLWHLTGQADKAADILATRKFHPWEGGEGKVTSQFILNQLLRAWQHLDARQPQQACELLHAALHYPENLSEGRLPGQTDNDIWFWQAICANAQGDETEATRCLRLAATGDRTINIHSYYNDQPVDYLFWQGMALRLLGEQQTAQQLFSEMKQWAQEMAKTSIEADFFAVSQPDLLSLYGDLQQQHKEKCLMVAMLASAGLGEVAQYESARAELTAINPAWPKAALFTTVMPFIFNRVH" [] ["CCO-OUTER-MEM", "CCO-CYTOSOL"] 0 [] {} 0 +"G7343-MONOMER" "DUF5107 domain-containing protein YphG" ["YphG"] "MTPVKVWQERVEIPTYETGPQDIHPMFLENRVYQGSSGAVYPYGVTDTLSEQKTLKSWQAVWLENDYIKVMILPELGGRVHRAWDKVKQRDFVYHNEVIKPALVGLLGPWISGGIEFNWPQHHRPTTFMPVDFTLEAHEDGAQTVWVGETEPMHGLQVMTGFTLRPDRAALEIASRVYNGNATPRHFLWWANPAVKGGEGHQSVFPPDVTAVFDHGKRAVSAFPIATGTYYKVDYSAGVDISRYKNVPVPTSYMAEKSQYDFVGAWCHDEDGGLLHVANHHIAPGKKQWSWGHSEFGQAWDKSLTDNNGPYIELMTGIFADNQPDFTWLDAYEEKRFEQYFLPYHSLGMVQNASRDAVIKLQRSKRGIEWGLYAISPLNGYRLAIREIGKCNALLDDAVALMPATAIQGVLHGINPERLTIELSDADGNIVLSYQEHQPQALPLPDVAKAPLAAQDITSTDEAWFIGQHLEQYHHASRSPFDYYLRGVALDPLDYRCNLALAMLEYNRADFPQAVAYATQALKRAHALNKNPQCGQASLIRASAYERQGQYQQAEEDFWRAVWSGNSKAGGYYGLARLAARNGNFDAGLDFCQQSLRACPTNQEVLCLHNLLLVLSGRQDNARVQREKLLRDYPLNATLWWLNWFDGRSESALAQWRGLCQGRDVNALMTAGQLINWGMPTLAAEMLNALDCQRTLPLYLQASLLPKAERGELVAKAIDVFPQFVRFPNTLEEVAALESIEECWFARHLLACFYYNKRSYNKAIAFWQRCVEMSPEFADGWRGLAIHAWNKQHDYELAARYLDNAYQLAPQDARLLFERDLLDKLSGATPEKRLARLENNLEIALKRDDMTAELLNLWHLTGQADKAADILATRKFHPWEGGEGKVTSQFILNQLLRAWQHLDARQPQQACELLHAALHYPENLSEGRLPGQTDNDIWFWQAICANAQGDETEATRCLRLAATGDRTINIHSYYNDQPVDYLFWQGMALRLLGEQQTAQQLFSEMKQWAQEMAKTSIEADFFAVSQPDLLSLYGDLQQQHKEKCLMVAMLASAGLGEVAQYESARAELTAINPAWPKAALFTTVMPFIFNRVH" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7344-MONOMER" "putative DNA-binding transcriptional regulator, NAGC-like" ["YphH"] "MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7345-MONOMER" "histidine kinase GlrK" ["QseE", "GlrK", "YfhZ", "YfhK"] "MKRWPVFPRSLRQLVMLAFLLILLPLLVLAWQAWQSLNALSDQAALVNRTTLIDARRSEAMTNAALEMERSYRQYCVLDDPTLAKVYQSQRKRYSEMLDAHAGVLPDDKLYQALRQDLHNLAQLQCNNSGPDAAAAARLEAFASANTEMVQATRTVVFSRGQQLQREIAERGQYFGWQSLVLFLVSLVMVLLFTRMIIGPVKNIERMINRLGEGRSLGNSVSFSGPSELRSVGQRILWLSERLSWLESQRHQFLRHLSHELKTPLASMREGTELLADQVVGPLTPEQKEVVSILDSSSRNLQKLIEQLLDYNRKQADSAVELENVELAPLVETVVSAHSLPARAKMMHTDVDLKATACLAEPMLLMSVLDNLYSNAVHYGAESGNICLRSSLHGARVYIDVINTGTPIPQEERAMIFEPFFQGSHQRKGAVKGSGLGLSIARDCIRRMQGELYLVDESGQDVCFRIELPSSKNTK" [] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 1 "G7346-MONOMER" "putative 4Fe-4S cluster-containing protein YfhL" ["YfhL"] "MALLITKKCINCDMCEPECPNEAISMGDHIYEINSDKCTECVGHYETPTCQKVCPIPNTIVKDPAHVETEEQLWDKFVLMHHADKI" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 2} 0 -"G7347-MONOMER" "protein RseC" ["RseC", "SoxR and σE factor regulatory protein RseC"] "MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"G7347-MONOMER" "regulatory protein RseC" ["RseC", "SoxR and σE factor regulatory protein RseC"] "MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "G7348-MONOMER" "anti-sigma factor stabilizing protein RseB" ["RseB"] "MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFGAAQ" ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "G7349-MONOMER" "tRNA 3-amino-3-carboxypropyltransferase" ["TuaA", "TapT", "YfiP", "tRNA aminocarboxypropyltransferase", "DTW domain-containing protein YfiP"] "MTENAVLQLRAERIARATRPFLARGNRVRRCQRCLLPEKLCLCSTITPAQAKSRFCLLMFDTEPMKPSNTGRLIADILPDTVAFQWSRTEPSQDLLELVQNPDYQPMVVFPASYADEQREVIFTPPAGKPPLFIMLDGTWPEARKMFRKSPYLDNLPVISVDLSRLSAYRLREAQAEGQYCTAEVAIALLDMAGDTGAAAGLGEHFTRFKTRYLAGKTQHLGSITAEQLESV" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 "G7350-MONOMER" "peptidyl-lysine N-acetyltransferase" ["PatZ", "Pka", "YfiQ"] "MSQRGLEALLRPKSIAVIGASMKPNRAGYLMMRNLLAGGFNGPVLPVTPAWKAVLGVLAWPDIASLPFTPDLAVLCTNASRNLALLEELGEKGCKTCIILSAPASQHEDLRACALRHNMRLLGPNSLGLLAPWQGLNASFSPVPIKRGKLAFISQSAAVSNTILDWAQQRKMGFSYFIALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFVSAARSASRNKPILVIKSGRSPAAQRLLNTTAGMDPAWDAAIQRAGLLRVQDTHELFSAVETLSHMRPLRGDRLMIISNGAAPAALALDALWSRNGKLATLSEETCQKLRDALPEHVAISNPLDLRDDASSEHYIKTLDILLHSQDFDALMVIHSPSAAAPATESAQVLIEAVKHHPRSKYVSLLTNWCGEHSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRRNQKQLRETPALPSNLTSNTAEAHLLLQQAIAEGATSLDTHEVQPILQAYGMNTLPTWIASDSTEAVHIAEQIGYPVALKLRSPDIPHKSEVQGVMLYLRTANEVQQAANAIFDRVKMAWPQARVHGLLVQSMANRAGAQELRVVVEHDPVFGPLIMLGEGGVEWRPEDQAVVALPPLNMNLARYLVIQGIKSKKIRARSALRPLDVAGLSQLLVQVSNLIVDCPEIQRLDIHPLLASGSEFTALDVTLDISPFEGDNESRLAVRPYPHQLEEWVELKNGERCLFRPILPEDEPQLQQFISRVTKEDLYYRYFSEINEFTHEDLANMTQIDYDREMAFVAVRRIDQTEEILGVTRAISDPDNIDAEFAVLVRSDLKGLGLGRRLMEKLITYTRDHGLQRLNGITMPNNRGMVALARKLGFNVDIQLEEGIVGLTLNLAQREES" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 -"G7352-MONOMER" "outer membrane protein assembly factor BamD" ["EcfD", "YfiO"] "MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT" ["CCO-MEMBRANE", "CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 +"G7352-MONOMER" "outer membrane protein assembly factor BamD" ["EcfD", "YfiO"] "MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT" ["CCO-MEMBRANE", "CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 1 "G7354-MONOMER" "DUF4154 domain-containing protein YfiR" ["YfiR", "putative periplasmic protein involved in swarming motility"] "MRFSHRLFLLLILLLTGAPILAQEPSDVAKNVRMMVSGIVSYTRWPALSGPPKLCIFSSSRFSTALQENAATSLPYLPVIIHTQQEAMISGCNGFYFGNESPTFQMELTEQYPSKALLLIAEQNTECIIGSAFCLIIHNNDVRFAVNLDALSRSGVKVNPDVLMLARKKNDG" [] ["CCO-PERI-BAC", "CCO-CYTOSOL"] 0 [] {} 0 -"G7355-MONOMER" "cytochrome c assembly family protein" ["YpjD"] "MPVFALLALVAYSVSLALIVPGLLQKNGGWRRMAIISAVIALVCHAIALEARILPDGDSGQNLSLLNVGSLVSLMICTVMTIVASRNRGWLLLPIVYAFALINLALATFMPNEYITHLEATPGMLVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKLAFNQEMPPLMSIERKMFHITQIGVVLLTLTLCTGLFYMHNLFSMENIDKAVLSIVAWFVYIVLLWGHYHEGWRGRRVVWFNVAGAVILTLAYFGSRIVQQLIS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7356-MONOMER" "UPF0053 family inner membrane protein YfjD" ["YfjD", "YpjE"] "MEHISTTTLIIILIIMVVISAYFSGSETGMMTLNRYRLRHMAKQGNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNAITRMLMRMMGIKTDIVVSGSLSKEELRTIVHESRSQISRRNQDMLLSVLDLEKMTVDDIMVPRSEIIGIDINDDWKSILRQLSHSPHGRIVLYRDSLDDAISMLRVREAWRLMSEKKEFTKETMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGTRVRIGEYDIDILDVQDNMIKQVKVFPVKPLRESVAE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7355-MONOMER" "cytochrome c assembly family protein" ["YpjD"] "MPVFALLALVAYSVSLALIVPGLLQKNGGWRRMAIISAVIALVCHAIALEARILPDGDSGQNLSLLNVGSLVSLMICTVMTIVASRNRGWLLLPIVYAFALINLALATFMPNEYITHLEATPGMLVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKLAFNQEMPPLMSIERKMFHITQIGVVLLTLTLCTGLFYMHNLFSMENIDKAVLSIVAWFVYIVLLWGHYHEGWRGRRVVWFNVAGAVILTLAYFGSRIVQQLIS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7356-MONOMER" "UPF0053 family inner membrane protein YfjD" ["YfjD", "YpjE"] "MEHISTTTLIIILIIMVVISAYFSGSETGMMTLNRYRLRHMAKQGNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNAITRMLMRMMGIKTDIVVSGSLSKEELRTIVHESRSQISRRNQDMLLSVLDLEKMTVDDIMVPRSEIIGIDINDDWKSILRQLSHSPHGRIVLYRDSLDDAISMLRVREAWRLMSEKKEFTKETMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGTRVRIGEYDIDILDVQDNMIKQVKVFPVKPLRESVAE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7357-MONOMER" "putative component of the Rsx system" ["RatB", "YfjF"] "MPGKIAVEVAYALPEKQYLQRVTLQEGATVEEAIRASGLLELRTDIDLTKNKVGIYSRPAKLSDSVHDGDRVEIYRPLIADPKELRRQRAEKSANK" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL"] 0 [] {} 0 "G7358-MONOMER" "ribosome association toxin RatA" ["RatA", "YfjG", "50S ribosomal subunit-binding toxin of a putative toxin-antitoxin pair"] "MILFVGFLLMEIVMPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRILESTPGQMTAAVDVSKAGISKTFTTRNQLTSNQSILMNLVDGPFKKLIGGWKFTPLSQEACRIEFHLDFEFTNKLIELAFGRVFKELAANMVQAFTVRAKEVYSAR" [] ["CCO-MEMBRANE"] 0 [] {} 0 "G7359-MONOMER" "CP4-57 prophage; uncharacterized protein YfjH" ["YfjH"] "MGIFKAKNPCTKNTIFTTSNTLIYGGFMISLNDFYEQICRKRRDLAYHMSECEWAVDTDVLEEDHPEIRIELGRMREQFWSSEKIGTRVRLYSCDVPWETRHHTVNGQLEIKEEYTELYDPAQECWKNLSSNLTKETFLPLVIEPFSINDIFKAHLMFASISFFWGKSIMSENENVAFKAFHRAAELFDKCIGMTWFNISVCNQKKLSEVRRSAGKKGGKSKAEVYHIIQLKLVELINDSVPNDGWKNKVVAVNELIEPLWDFIQMSEFEINNQNKKYRVATMSQDALVDTILNQWSLKNEDVKQAFDSAVRRKKRSK" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -2801,34 +2801,34 @@ "G7368-MONOMER" "CP4-57 prophage; DUF932 domain-containing protein YfjQ" ["YfjQ"] "MTRLASRFGAANLIRRDRPLTREELFRVVPSVFSEDKHESRSERYTYIPTISLLDSLQREGFQPFFACQTRVRDPRRREHTKHMLRLRREGQITGKQVPEIILLNSHDGTSSYQMLPGMFRAVCQNGLVCGESFGEVRVPHKGDVVSQVIEGAYEVLGIFERVEEKRDAMQSLLLPPPVQQALAKAALTYRFGEDHQPVTESQILSPRRWQDESNDLWTTYQRIQENLIKGGLSGRNAKGGRTHTRAVRGIDGDVKLNRALWVMAETLLTQLQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7369-MONOMER" "CP4-57 prophage; putative DNA-binding transcriptional regulator YfjR" ["YfjR"] "MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7370-MONOMER" "CP4-57 prophage; uncharacterized protein YpjK" ["YpjK", "CP4-57 prophage; putative inner membrane protein"] "MPVIAIIAIVIIVIILNKTGVSDSLTALTLATVAALLTGGGAAGAASVALTPFVGVPVGIFVGIYVFAKVVRLISGKK" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 -"G7371-MONOMER" "CP4-57 prophage; inner membrane lipoprotein YfjS" ["YfjS"] "MKRKTLPLLALVATSLFLSACDDRSDDLKAISKFKDLTPPRFSDVVSRQDDVSEEWSQVGFSSGLTLQVLRTRESPDGCEGGSYYYLVDMEEKTVQPLMNALCIADNIKLEYHEVTDPYTKEKYFEYSHDGKLMGRLLIPSNPDNRE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"G7371-MONOMER" "CP4-57 prophage; inner membrane lipoprotein YfjS" ["YfjS"] "MKRKTLPLLALVATSLFLSACDDRSDDLKAISKFKDLTPPRFSDVVSRQDDVSEEWSQVGFSSGLTLQVLRTRESPDGCEGGSYYYLVDMEEKTVQPLMNALCIADNIKLEYHEVTDPYTKEKYFEYSHDGKLMGRLLIPSNPDNRE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7372-MONOMER" "CP4-57 prophage; uncharacterized protein YfjT" ["YfjT"] "MKIRSLSRFVLASTMFASFTASAVPGLWQQGYGQGNAEYSVTDASGKMFTINCTGNPDQNGIYQHSVFLILAGDKTVSSHDDSTGITVVMDHKQYAIPSTLGWRNGDNAWFSFIMDIRKARQFDVYVNDQKVGSFNPDVRNAQKVLPTLADCTND" [] [] 0 [] {} 0 "G7373-MONOMER" "CP4-57 prophage; putative arsenate reductase-like protein YfjU" ["YfjU"] "MSNITIYHNPACGTSRNTLEMLHNNGNEPTIINYLDMPPTRDELIKLISDIFSDKIIECIREQCHLMPALSLNVIGHVDIRSIHSYLFNFNEKVSPSHGFIKNG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7376-MONOMER" "CP4-57 prophage; putative arsenite transporter" ["YpjL", "YfjV", "YpjM"] "MALFTWKVLLGAAVDALFANDGAALILTPIVIAMLIALGSARARHWPLSWLQDLLQIRPACRSLFLTW*ISSRRTSSV*ALRSTPPL*SPWMRQRLRPR*LCCISSFAELFRQRIKFRC*RRLPVRSRIWQPSGRAGLSCYCCLSVSSFWSRRESWSVR*RPLAQQCCLWWRKEVIRSTPEKSCAVRHGRSLFSHWACTSWSMACAMQGSRSTCLAC*ICWQTRGYGQRRSAPAS*RHFSHQ**TICRRC*LVRCRLTGVRRLASSKRQ*FMPM*LAVI*ARKSPRLAVWQLCCGCMCLPRKI*QSLGDITSVPALS*LCRCCLSLWPRWRGGSLSL" [] [] 0 [] {} 0 -"G7377-MONOMER" "CP4-57 prophage; uncharacterized protein YfjW" ["YfjW", "CP4-57 prophage; putative inner membrane protein"] "MAFVSEREIVRKIFSKKIDFTILAFFYISSIFFLLCSGVLFQYFTAAFTKGNCYECSMKLDYIKQFYFSLETAWYLISAVAVFIASVFIQHRIKAYLTLLAITWIVLTITDVALIHALDNIAMNNILLNILYNLFGAILLSLFMCLSNSLLFHLNKIKHIPMILSAMIPLVSAIIIAILITAVIYLLFARQAVEIEMDISEGSDIAYVGVKDNEESFGFLNDKKTDTPTYLDVIKNGSLIYNDTQGLSGADIYIVSGCYALPDLLRNVPLDAKKSFLNVKKLEITQKLPMMGFIQGESADVMPKAASRLSLSKQDDKFMLASSVTDSQIKFKSNNAQLMVAFAFMPITTNGILHDYTYDIIINDKKYKIENHVAPLSRLDKNKKMKCEYQQISDLTNTYNINANYLTGFLLVLKPDDIINYNNSPSVLLKTDFAFYKKTYQKLDKIYDDISNGKLSSLRATGISQFSINGKHLSLRPESEIIISEGSLYGLVNKSKKIKIYGTADLVFVDNKIMNLRKITYLQSKLEIFGSSIMDILKYIFGLGLLAISIKFIHSYFKNDVNENLFL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7378-MONOMER" "CP4-57 prophage; putative antirestriction protein YfjX" ["YfjX"] "MTTQTQYDLVPANGSEFELSVTQVPDEQHIRFWPQHFGTIPQWITLEPRIFAWMDRFCDEYCGGIWSFYTLSNGGAFMAPDADGDDKWHLLNGMNGNGAEMSAEAAGIAVCLIEYSHHACLTECDAMTEHYYRLRDYALQHPESSAIMRIID" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7379-MONOMER" "CP4-57 prophage; RadC-like JAB domain-containing protein YfjY" ["YfjY"] "MMEQSLIPQTPVLPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLKLKMAGLEREEFMMLYLNQQNQLIAHETLFAGSISSTEVHPREVVKRALYFNAAAVILAHNHPSGDTTPSQADKTITQRLVQALQLVDIRVPDHLIVGGRQIYSFAEHGLL" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 -"G7380-MONOMER" "CP4-57 prophage; putative antitoxin of the YpjF-YfjZ toxin-antitoxin system" ["YfjZ"] "MSNTTWGLQRDITPRLGARLVQEGNQLHYLADRASITGKFSDAECPKLDVVFPHFISQIESMLTTGELNPRHAQCVTLYHNGFTCEADTLGSCGYVYIAVYPTQR" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7381-MONOMER" "CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system" ["YpjF"] "MNTLPATISQAAKPCLSPVAVWQMLLTRLLEQHYGLTLNDTPFSDETVIKEHIDAGITLADAVNFLVEKYELVRIDHRGFSWQQQSPYISVVDILRARRSTGLLKTNVK" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7382-MONOMER" "adhesin-like autotransporter YpjA" ["YpjA"] "MNRTSPYYCRRSVLSLLISALIYAPPGMAAFTTNVIGVVNDETVDGNQKVDERGTTNNTHIINHGQQNVHGGVSNGSLIESGGYQDIGSHNNFVGQANNTTINGGRQSIHDGGISTGTTIESGNQDVYKGGISNGTTIKGGASRVEGGSANGILIDGGSQIVKVQGHADGTTINKSGSQDVVQGSLATNTTINGGRQYVEQSTVETTTIKNGGEQRVYESRALDTTIEGGTQSLNSKSTAKNTHIYSGGTQIVDNTSTSDVIEVYSGGVLDVRGGTATNVTQHDGAILKTNTNGTTVSGTNSEGAFSIHNHVADNVLLENGGHLDINAYGSANKTIIKDKGTMSVLTNAKADATRIDNGGVMDVAGNATNTIINGGTQNINNYGIATGTNINSGTQNIKSGGKADTTIISSGSRQVVEKDGTAIGSNISAGGSLIVYTGGIAHGVNQETGSALVANTGAGTDIEGYNKLSHFTITGGEANYVVLENTGELTVVAKTSAKNTTIDTGGKLIVQKEAKTDSTRLNNGGVLEVQDGGEAKHVEQQSGGALIASTTSGTLIEGTNSYGDAFYIRNSEAKNVVLENAGSLTVVTGSRAVDTIINANGKMDVYGKDVGTVLNSAGTQTIYASATSDKANIKGGKQTVYGLATEANIESGEQIVDGGSTEKTHINGGTQTVQNYGKAINTDIVSGLQQIMANGTAEGSIINGGSQVVNEGGLAENSVLNDGGTLDVREKGSATGIQQSSQGALVATTRATRVTGTRADGVAFSIEQGAANNILLANGGVLTVESDTSSDKTQVNMGGREIVKTKATATGTTLTGGEQIVEGVANETTINDGGIQTVSANGEAIKTKINEGGTLTVNDNGKATDIVQNSGAALQTSTANGIEISGTHQYGTFSISGNLATNMLLENGGNLLVLAGTEARDSTVGKGGAMQNLGQDSATKVNSGGQYTLGRSKDEFQALARAEDLQVAGGTAIVYAGTLADASVSGATGSLSLMTPRDNVTPVKLEGAVRITDSATLTLGNGVDTTLADLTAASRGSVWLNSNNSCAGTSNCEYRVNSLLLNDGDVYLSAQTAAPATTNGIYNTLTTNELSGSGNFYLHTNVAGSRGDQLVVNNNATGNFKIFVQDTGVSPQSDDAMTLVKTGGGDASFTLGNTGGFVDLGTYEYVLKSDGNSNWNLTNDVKPNPDPIPNPKPDPKPDPKPDPNPKPDPTPDPTPTPVPEKRITPSTAAVLNMAATLPLVFDAELNSIRERLNIMKASPHNNNVWGATYNTRNNVTTDAGAGFEQTLTGMTVGIDSRNDIPEGITTLGAFMGYSHSHIGFDRGGHGSVGSYSLGGYASWEHESGFYLDGVVKLNRFKSNVAGKMSSGGAANGSYHSNGLGGHIETGMRFTDGNWNLTPYASLTGFTADNPEYHLSNGMKSKSVDTRSIYRELGATLSYNMRLGNGMEVEPWLKAAVRKEFVDDNRVKVNSDGNFVNYLSGRRGIYQAGIKASFSSTLSGHLGVGYSHSAGVESPWNAVAGVNWSF" [] ["CCO-OUTER-MEM", "CCO-MEMBRANE", "CCO-EXTRACELLULAR"] 0 [] {} 0 +"G7377-MONOMER" "CP4-57 prophage; uncharacterized protein YfjW" ["YfjW", "CP4-57 prophage; putative inner membrane protein"] "MAFVSEREIVRKIFSKKIDFTILAFFYISSIFFLLCSGVLFQYFTAAFTKGNCYECSMKLDYIKQFYFSLETAWYLISAVAVFIASVFIQHRIKAYLTLLAITWIVLTITDVALIHALDNIAMNNILLNILYNLFGAILLSLFMCLSNSLLFHLNKIKHIPMILSAMIPLVSAIIIAILITAVIYLLFARQAVEIEMDISEGSDIAYVGVKDNEESFGFLNDKKTDTPTYLDVIKNGSLIYNDTQGLSGADIYIVSGCYALPDLLRNVPLDAKKSFLNVKKLEITQKLPMMGFIQGESADVMPKAASRLSLSKQDDKFMLASSVTDSQIKFKSNNAQLMVAFAFMPITTNGILHDYTYDIIINDKKYKIENHVAPLSRLDKNKKMKCEYQQISDLTNTYNINANYLTGFLLVLKPDDIINYNNSPSVLLKTDFAFYKKTYQKLDKIYDDISNGKLSSLRATGISQFSINGKHLSLRPESEIIISEGSLYGLVNKSKKIKIYGTADLVFVDNKIMNLRKITYLQSKLEIFGSSIMDILKYIFGLGLLAISIKFIHSYFKNDVNENLFL" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7378-MONOMER" "CP4-57 prophage; putative antirestriction protein" ["LfgA", "YfjX"] "MTTQTQYDLVPANGSEFELSVTQVPDEQHIRFWPQHFGTIPQWITLEPRIFAWMDRFCDEYCGGIWSFYTLSNGGAFMAPDADGDDKWHLLNGMNGNGAEMSAEAAGIAVCLIEYSHHACLTECDAMTEHYYRLRDYALQHPESSAIMRIID" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"G7379-MONOMER" "CP4-57 prophage protease" ["LfgB", "YfjY", "CP4-57 prophage; RadC-like JAB domain-containing protein YfjY", "putative zinc protease"] "MMEQSLIPQTPVLPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLKLKMAGLEREEFMMLYLNQQNQLIAHETLFAGSISSTEVHPREVVKRALYFNAAAVILAHNHPSGDTTPSQADKTITQRLVQALQLVDIRVPDHLIVGGRQIYSFAEHGLL" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 +"G7380-MONOMER" "CP4-57 prophage; putative antitoxin of the YpjF-YfjZ toxin-antitoxin system" ["LfgD", "YfjZ"] "MSNTTWGLQRDITPRLGARLVQEGNQLHYLADRASITGKFSDAECPKLDVVFPHFISQIESMLTTGELNPRHAQCVTLYHNGFTCEADTLGSCGYVYIAVYPTQR" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"G7381-MONOMER" "CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system" ["LfgE", "YpjF"] "MNTLPATISQAAKPCLSPVAVWQMLLTRLLEQHYGLTLNDTPFSDETVIKEHIDAGITLADAVNFLVEKYELVRIDHRGFSWQQQSPYISVVDILRARRSTGLLKTNVK" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"G7382-MONOMER" "adhesin-like autotransporter YpjA" ["YpjA"] "MNRTSPYYCRRSVLSLLISALIYAPPGMAAFTTNVIGVVNDETVDGNQKVDERGTTNNTHIINHGQQNVHGGVSNGSLIESGGYQDIGSHNNFVGQANNTTINGGRQSIHDGGISTGTTIESGNQDVYKGGISNGTTIKGGASRVEGGSANGILIDGGSQIVKVQGHADGTTINKSGSQDVVQGSLATNTTINGGRQYVEQSTVETTTIKNGGEQRVYESRALDTTIEGGTQSLNSKSTAKNTHIYSGGTQIVDNTSTSDVIEVYSGGVLDVRGGTATNVTQHDGAILKTNTNGTTVSGTNSEGAFSIHNHVADNVLLENGGHLDINAYGSANKTIIKDKGTMSVLTNAKADATRIDNGGVMDVAGNATNTIINGGTQNINNYGIATGTNINSGTQNIKSGGKADTTIISSGSRQVVEKDGTAIGSNISAGGSLIVYTGGIAHGVNQETGSALVANTGAGTDIEGYNKLSHFTITGGEANYVVLENTGELTVVAKTSAKNTTIDTGGKLIVQKEAKTDSTRLNNGGVLEVQDGGEAKHVEQQSGGALIASTTSGTLIEGTNSYGDAFYIRNSEAKNVVLENAGSLTVVTGSRAVDTIINANGKMDVYGKDVGTVLNSAGTQTIYASATSDKANIKGGKQTVYGLATEANIESGEQIVDGGSTEKTHINGGTQTVQNYGKAINTDIVSGLQQIMANGTAEGSIINGGSQVVNEGGLAENSVLNDGGTLDVREKGSATGIQQSSQGALVATTRATRVTGTRADGVAFSIEQGAANNILLANGGVLTVESDTSSDKTQVNMGGREIVKTKATATGTTLTGGEQIVEGVANETTINDGGIQTVSANGEAIKTKINEGGTLTVNDNGKATDIVQNSGAALQTSTANGIEISGTHQYGTFSISGNLATNMLLENGGNLLVLAGTEARDSTVGKGGAMQNLGQDSATKVNSGGQYTLGRSKDEFQALARAEDLQVAGGTAIVYAGTLADASVSGATGSLSLMTPRDNVTPVKLEGAVRITDSATLTLGNGVDTTLADLTAASRGSVWLNSNNSCAGTSNCEYRVNSLLLNDGDVYLSAQTAAPATTNGIYNTLTTNELSGSGNFYLHTNVAGSRGDQLVVNNNATGNFKIFVQDTGVSPQSDDAMTLVKTGGGDASFTLGNTGGFVDLGTYEYVLKSDGNSNWNLTNDVKPNPDPIPNPKPDPKPDPKPDPNPKPDPTPDPTPTPVPEKRITPSTAAVLNMAATLPLVFDAELNSIRERLNIMKASPHNNNVWGATYNTRNNVTTDAGAGFEQTLTGMTVGIDSRNDIPEGITTLGAFMGYSHSHIGFDRGGHGSVGSYSLGGYASWEHESGFYLDGVVKLNRFKSNVAGKMSSGGAANGSYHSNGLGGHIETGMRFTDGNWNLTPYASLTGFTADNPEYHLSNGMKSKSVDTRSIYRELGATLSYNMRLGNGMEVEPWLKAAVRKEFVDDNRVKVNSDGNFVNYLSGRRGIYQAGIKASFSSTLSGHLGVGYSHSAGVESPWNAVAGVNWSF" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM", "CCO-EXTRACELLULAR"] 0 [] {} 0 "G7383-MONOMER" "putative invertase fragment" ["YpjG", "PinH"] "MRGRRSGLKKLVRTSSAGNALLVCKLNRLGRSMWHLVVLLEELCERGINFRALAQSIFAQQWGDECCKSKTICDLKVIV" [] ["CCO-MEMBRANE"] 0 [] {} 0 "G7384-MONOMER" "DUF5508 domain-containing protein YpjB" ["YpjB"] "MESRNSYENKIDEISSLSESKEHPIDIQEKKDAFVNEFKGVLFDKNTRSSELLFNFYECCYKFLPRAQPQDKIDSYNSALQAFSIFCSSTLTHNNIGFDFKLFPEVKLSGEHLETVFKYKNGDDVREIAKINITLQKEEGGLYNLRGLDFKGCFFSGQNFSNYDIQYVNWGTSLFDVDTPCIFNAPAYNKSNEKSLKPVSENGLSGVLTDRNNKIKLITGVAPFDDILFMDDDFDDSSSEDDPVENSPVVTSPVVSSSKSSFQ" [] ["CCO-OUTER-MEM"] 0 [] {} 0 "G7385-MONOMER" "DUF5507 domain-containing protein YpjC" ["YpjC"] "MLVSKSNGFNASAVLGSGSYNENKSSKHMELLAHSILKLICKEAASETYRGALETLQKMMSECIYQEGNAFVIMGAGEQLKRIKYEVGENNLKVFNVHFNNNHELVSSGEPDVICLSKQVWENLLIKLKLENNENVFSETKKLSNKNNADQFFECAKRNE" [] [] 0 [] {} 0 -"G7389-MONOMER" "putative uncharacterized protein YgaQ" [] "MFSIKPGPRNLPIDNPTLLSWNITDGDLNSKLNTLEYLNCITNIINSCGVYPQGLKDREIISTFHAEKVINDLLKNDYKISLSPDTTYRELNKAAQRSITAPDRIGERKT*VYQRDTMIERGDNSGVYQYGRAEHFTHIISDKPSPKDKYVAYAINIPDYELAADVYNINVTSPSGQQETFKILINLEHLRQTLERKSLTAVQKSQCEIITPKKPGEAILHAFNATYQQIRENMSEFARCHYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMGDLQDFIALVKDAKKFGIDIIPDYTFNFMGIGGSGKNDLDYPSADIRAKISKDIEGGIPGY*QGQVLIPFIKDPVTKERKQIHPEDIHLTAKDFEASKDNISKDEWENLHALKEKRLNGMPKTTPKSDQVIMLQNQYVREMRKYGVRGLRYDAAKHSKHEQIERSITPPLKNYNERLHNTNLFNPKYHKKAVMNYMEYLVTCQLDEQQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGDLQTLASKPGSTISSIPSERRILININHDFPNNGNLFNDFLFNHQQDEQLAMAYIAALPFSRPLVYWDGQVLKSTTEIKNYDGSTRVGGEA*LNKGCSTYQQLYNEFHALYIDKAGIWSAFEGVSATKNVLAFSRGDSVNINHSPHDGLVIINKGNEEVEGTWPNKLQPGIYKNMGSNSVNIIINNTRKIIPPGKVFTLRGGTLNINIPGRSALLLGKTGEPPNYLYL" [] ["CCO-EXTRACELLULAR"] 0 [] {} 0 +"G7389-MONOMER" "putative uncharacterized protein YgaQ" [] "MFSIKPGPRNLPIDNPTLLSWNITDGDLNSKLNTLEYLNCITNIINSCGVYPQGLKDREIISTFHAEKVINDLLKNDYKISLSPDTTYRELNKAAQRSITAPDRIGERKT*VYQRDTMIERGDNSGVYQYGRAEHFTHIISDKPSPKDKYVAYAINIPDYELAADVYNINVTSPSGQQETFKILINLEHLRQTLERKSLTAVQKSQCEIITPKKPGEAILHAFNATYQQIRENMSEFARCHYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMGDLQDFIALVKDAKKFGIDIIPDYTFNFMGIGGSGKNDLDYPSADIRAKISKDIEGGIPGY*QGQVLIPFIKDPVTKERKQIHPEDIHLTAKDFEASKDNISKDEWENLHALKEKRLNGMPKTTPKSDQVIMLQNQYVREMRKYGVRGLRYDAAKHSKHEQIERSITPPLKNYNERLHNTNLFNPKYHKKAVMNYMEYLVTCQLDEQQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGDLQTLASKPGSTISSIPSERRILININHDFPNNGNLFNDFLFNHQQDEQLAMAYIAALPFSRPLVYWDGQVLKSTTEIKNYDGSTRVGGEA*LNKGCSTYQQLYNEFHALYIDKAGIWSAFEGVSATKNVLAFSRGDSVNINHSPHDGLVIINKGNEEVEGTWPNKLQPGIYKNMGSNSVNIIINNTRKIIPPGKVFTLRGGTLNINIPGRSALLLGKTGEPPNYLYL" [] [] 0 [] {} 0 "G7394-MONOMER" "glutarate dioxygenase GlaH" ["GlaH", "YgaT", "CsiD"] "MNALTAVQNNAVDSGQDYSGFTLTPSAQSPRLLELTFTEQTTKQFLEQVAEWPVQALEYKSFLRFRVAKILDDLCANQLQPLLLKTLLNRAEGALLINAVGVDDVKQADEMVKLATAVAHLIGRSNFDAMSGQYYARFVVKNVDNSDSYLRQPHRVMELHNDGTYVEEITDYVLMMKIDEQNMQGGNSLLLHLDDWEHLDNYFRHPLARRPMRFAAPPSKNVSKDVFHPVFDVDQQGRPVMRYIDQFVQPKDFEEGVWLSELSDAIETSKGILSVPVPVGKFLLINNLFWLHGRDRFTPHPDLRRELMRQRGYFAYASNHYQTHQ" [] ["CCO-CYTOSOL"] 0 [] {"FE+2": 1} 1 "G7395-MONOMER" "K+ binding protein" ["Kbp", "YzzM", "YgaU"] "MGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLNKTGIPDADKVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGIASVDDQVKTATPATASQFYTVKSGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIPEE" [] ["CCO-CYTOSOL"] 1 [] {} 0 "G7396-MONOMER" "Pmp3 family protein YqaE" ["YqaE"] "MGFWRIVITIILPPLGVLLGKGFGWAFIINILLTLLGYIPGLIHAFWVQTRD" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7397-MONOMER" "putative DNA-binding transcriptional regulator YgaV" ["YgaV"] "MTELAQLQASAEQAAALLKAMSHPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLKNVYCP" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7398-MONOMER" "thiosulfate sulfurtransferase YgaP" ["YgaP"] "MALTTISPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLSVLEQSGLPAKLRHEQIIFHCQAGKRTSNNADKLAAIAAPAEIFLLEDGIDGWKKAGLPVAVNKSQPLPLMRQVQIAAGGLILIGVVLGYTVNSGFFLLSGFVGAGLLFAGISGFCGMARLLDKMPWNQRA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 -"G7399-MONOMER" null ["YgaW", "AlaE"] "MFSPQSRLRHAVADTFAMVVYCSVVNMCIEVFLSGMSFEQSFYSRLVAIPVNILIAWPYGMYRDLFMRAARKVSPSGWIKNLADILAYVTFQSPVYVAILLVVGADWHQIMAAVSSNIVVSMLMGAVYGYFLDYCRRLFKVSRYQQVKA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"G7398-MONOMER" "thiosulfate sulfurtransferase YgaP" ["YgaP"] "MALTTISPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLSVLEQSGLPAKLRHEQIIFHCQAGKRTSNNADKLAAIAAPAEIFLLEDGIDGWKKAGLPVAVNKSQPLPLMRQVQIAAGGLILIGVVLGYTVNSGFFLLSGFVGAGLLFAGISGFCGMARLLDKMPWNQRA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"G7399-MONOMER" "L-alanine exporter" ["YgaW", "AlaE"] "MFSPQSRLRHAVADTFAMVVYCSVVNMCIEVFLSGMSFEQSFYSRLVAIPVNILIAWPYGMYRDLFMRAARKVSPSGWIKNLADILAYVTFQSPVYVAILLVVGADWHQIMAAVSSNIVVSMLMGAVYGYFLDYCRRLFKVSRYQQVKA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "G7401-MONOMER" "glutaredoxin-like protein NrdH" ["YgaN", "NrdH"] "MRITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRAQGFRQLPVVIAGDLSWSGFRPDMINRLHPAPHAASA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7402-MONOMER" "dimanganese-tyrosyl radical cofactor maintenance flavodoxin NrdI" ["YgaO", "NrdI", "flavodoxin involved in dimanganese-tyrosyl radical cofactor maintenance for ribonucleotide reductase", "flavodoxin NrdI"] "MSQLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIENVRKGVTEFWQRQPQNA" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7405-MONOMER" "L-valine exporter, YgaZ component" ["YgaZ", "YgaZ L-valine LIV-E exporter"] "MESPTPQPAPGSATFMEGCKDSLPIVISYIPVAFAFGLNATRLGFSPLESVFFSCIIYAGASQFVITAMLAAGSSLWIAALTVMAMDVRHVLYGPSLRSRIIQRLQKSKTALWAFGLTDEVFAAATAKLVRNNRRWSENWMIGIAFSSWSSWVFGTVIGAFSGSGLLQGYPAVEAALGFMLPALFMSFLLASFQRKQSLCVTAALVGALAGVTLFSIPVAILAGIVCGCLTALIQAFWQGAPDEL" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"G7405-MONOMER" "L-valine exporter, YgaZ component" ["YgaZ", "YgaZ L-valine LIV-E exporter"] "MESPTPQPAPGSATFMEGCKDSLPIVISYIPVAFAFGLNATRLGFSPLESVFFSCIIYAGASQFVITAMLAAGSSLWIAALTVMAMDVRHVLYGPSLRSRIIQRLQKSKTALWAFGLTDEVFAAATAKLVRNNRRWSENWMIGIAFSSWSSWVFGTVIGAFSGSGLLQGYPAVEAALGFMLPALFMSFLLASFQRKQSLCVTAALVGALAGVTLFSIPVAILAGIVCGCLTALIQAFWQGAPDEL" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "G7406-MONOMER" "L-valine exporter, YgaH component" ["YgaH"] "MSYEVLLLGLLVGVANYCFRYLPLRLRVGNARPTKRGAVGILLDTIGIASICALLVVSTAPEVMHDTRRFVPTLVGFAVLGASFYKTRSIIIPTLLSALAYGLAWKVMAII" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 -"G7407-MONOMER" "DedA family protein YqaA" ["YqaA"] "MSEALSLFSLFASSFLSATLLPGNSEVVLVAMLLSGISHPWVLVLTATMGNSLGGLTNVILGRFFPLRKTSRWQEKATGWLKRYGAVTLLLSWMPVVGDLLCLLAGWMRISWGPVIFFLCLGKALRYVAVAAATVQGMMWWH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7407-MONOMER" "DedA family protein YqaA" ["YqaA"] "MSEALSLFSLFASSFLSATLLPGNSEVVLVAMLLSGISHPWVLVLTATMGNSLGGLTNVILGRFFPLRKTSRWQEKATGWLKRYGAVTLLLSWMPVVGDLLCLLAGWMRISWGPVIFFLCLGKALRYVAVAAATVQGMMWWH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7408-MONOMER" "fructose-1-phosphate phosphatase YqaB" ["YqaB", "HAD6", "fructose-1-phosphatase"] "MYERYAGLIFDMDGTILDTEPTHRKAWREVLGHYGLQYDIQAMIALNGSPTWRIAQAIIELNQADLDPHALAREKTEAVRSMLLDSVEPLPLVDVVKSWHGRRPMAVGTGSESAIAEALLAHLGLRHYFDAVVAADHVKHHKPAPDTFLLCAQRMGVQPTQCVVFEDADFGIQAARAAGMDAVDVRLL" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "G7409-MONOMER" "NMN aminohydrolase" ["PncC", "YgaD"] "MTDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAGSSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSEPVVVEMAIGALKAARADYAVSISGIAGPDGGSEEKPVGTVWFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQFLQNT" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G7410-MONOMER" "membrane-bound lytic murein transglycosylase B" ["MltB", "Slt", "Slt35"] "MFKRRYVTLLPLFVLLAACSSKPKPTETDTTTGTPSGGFLLEPQHNVMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTTSVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAGAMGYGQFMPSSYKQYAVDFSGDGHINLWDPVDAIGSVANYFKAHGWVKGDQVAVMANGQAPGLPNGFKTKYSISQLAAAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYTITRYNHSTHYAMAVWQLGQAVALARVQ" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"G7410-MONOMER" "membrane-bound lytic murein transglycosylase B" ["MltB", "Slt", "Slt35"] "MFKRRYVTLLPLFVLLAACSSKPKPTETDTTTGTPSGGFLLEPQHNVMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTTSVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAGAMGYGQFMPSSYKQYAVDFSGDGHINLWDPVDAIGSVANYFKAHGWVKGDQVAVMANGQAPGLPNGFKTKYSISQLAAAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYTITRYNHSTHYAMAVWQLGQAVALARVQ" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 0 "G7413-MONOMER" "anaerobic nitric oxide reductase flavorubredoxin" ["YgaK", "YgaI", "YgaJ", "NorV", "FlRd", "flavorubredoxin"] "MSIVVKNNIHWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIREEKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYCTANAIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTGDAVLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNLPVDMIATSHGVVWRDNPTQIVELYLKWAADYQEDRITIFYDTMSNNTRMMADAIAQGIAETDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGTSTMNNVMMPKIAGLVEEMTGLRFRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDQDALKLCREHGREIARQWALAPLPQSTVNTVVKEETSATTTADLGPRMQCSVCQWIYDPAKGEPMQDVAPGTPWSEVPDNFLCPECSLGKDVFEELASEAK" [] ["CCO-CYTOSOL"] 0 [] {"FE+2": 3} 1 "G7414-MONOMER" "hydrogenase 3 maturation protease" ["HycI", "HycE processing protein"] "MTDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPENDIVAIRELRPTRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLKEDIGEVIFLGIQPDIVGFYYPMTQPIKDAVETVYQRLEGWEGNGGFAQLAVEEE" [] ["CCO-CYTOSOL"] 1 [] {"NI+2": 1} 0 "G7415-MONOMER" "phosphoprotein phosphatase 2" ["YgbH", "PrpB", "PphB"] "MPSTRYQKINAHHYRHIWVVGDIHGEYQLLQSRLHQLSFFPKIDLLISVGDNIDRGPESLDVLRLLNQPWFTSVKGNHEAMALEAFETGDGNMWLASGGDWFFDLNDSEQQEAIDLLLKFHHLPHIIEITNDNIKYAIAHADYPGSEYLFGKEIAESELLWPVDRVQKSLNGELQQINGADYFIFGHMMFDNIQTFANQIYIDTGSPNSGRLSFYKIK" [] ["CCO-CYTOSOL"] 0 [] {"MN+2": 2} 0 @@ -2839,7 +2839,7 @@ "G7420-MONOMER" "putative 2-oxo-tetronate isomerase YgbM" ["YgbM"] "MPRFAANLSMMFTEVPFIERFAAARKAGFDAVEFLFPYNYSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEAHADIDLALEYALALNCEQVHVMAGVVPAGEDAERYRAVFIDNIRYAADRFAPHGKRILVEALSPGVKPHYLFSSQYQALAIVEEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGKYAHVQIAGLPDRHEPDDGEINYPWLFRLFDEVGYQGWIGCEYKPRGLTEEGLGWFDAWR" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "G7422-MONOMER" "tRNA pseudouridine13 synthase" ["YgbO", "TruD"] "MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G7423-MONOMER" "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase" ["YgbP", "IspD", "4-diphosphocytidyl-2C-methyl-D-erythritol synthase"] "MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 -"G7424-MONOMER" "cell division protein FtsB" ["FtsB", "YgbQ", "essential cell division protein FtsB"] "MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 +"G7424-MONOMER" "cell division protein FtsB" ["FtsB", "YgbQ", "essential cell division protein FtsB"] "MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "G7425-MONOMER" "multifunctional nuclease Cas1" ["YgbT", "Cas1"] "MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "G7426-MONOMER" "pre-CRISPR RNA endonuclease" ["YgcH", "CasE", "Cas6e", "crRNA endonuclease"] "MYLSKVIIARAWSRDLYQLHQGLWHLFPNRPDAARDFLFHVEKRNTPEGCHVLLQSAQMPVSTAVATVIKTKQVEFQLQVGVPLYFRLRANPIKTILDNQKRLDSKGNIKRCRVPLIKEAEQIAWLQRKLGNAARVEDVHPISERPQYFSGDGKSGKIQTVCFEGVLTINDAPALIDLVQQGIGPAKSMGCGLLSLAPL" [] [] 1 [] {} 1 "G7427-MONOMER" "type I-E CRISPR system Cascade subunit CasD" ["YgcI", "CasD", "Cas5e", "Cascade subunit D"] "MRSYLILRLAGPMQAWGQPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQALSESVQFAVRCDELILDDRRVSVTGLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTVALWLTPHATMVISELEKAVLKPRYTPYLGRRSCPLTHPLFLGTCQASDPQKALLNYEPVGGDIYSEESVTGHHLKFTARDEPMITLPRQFASREWYVIKGGMDVSQ" [] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -2856,14 +2856,14 @@ "G7440-MONOMER" "putative deoxygluconate dehydrogenase" ["YgcW"] "MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVGITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7442-MONOMER" "putative sugar kinase YgcE" ["YgcE"] "MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDNMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7443-MONOMER" "putative 7-carboxy-7-deazaguanine synthase QueE" ["QueE", "YgcF", "putative CDG synthase"] "MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1, "MG+2": 1} 0 -"G7444-MONOMER" "TPM domain-containing protein YgcG" ["YgcG"] "MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIVVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAKGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7444-MONOMER" "TPM domain-containing protein YgcG" ["YgcG"] "MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIVVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAKGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7446-MONOMER" "glucarate dehydratase-related protein" ["GudX", "YgcY", "GlucDRP"] "MATQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTDNAGHTGIGEAPGGDVIYQTLVDAIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGAWTFELRVNAVAALEAALLDLLGKALNVPVCELLGPGKQREAITVLGYLFYIGDRTKTDLPYVENTPGNHEWYQLRHQKAMNSEAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDTVRALKKRFPDARITVDPNGAWLLDEAISLCKGLNDVLTYAEDPCGAEQGFSGREVMAEFRRATGLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLTWGCHSNNHFDISLAMFTHVGAAAPGNPTAIDTHWIWQEGDCRLTQNPLEIKNGKIAVPDAPGLGVELDWEQVQKAHEAYKRLPGGARNDAGPMQYLIPGWTFDRKRPVFGRH" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 -"G7448-MONOMER" "putative flavodoxin YqcA" ["YqcA"] "MAEIGIFVGTMYGNSLLVAEEAEAILTAQGHKATVFEDPELSDWLPYQDKYVLVVTSTTGQGDLPDSIVPLFQGIKDSLGFQPNLRYGVIALGDSSYVNFCNGGKQFDALLQEQSAQRVGEMLLIDASENPEPETESNPWVEQWGTLLS" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"G7448-MONOMER" "putative flavodoxin YqcA" ["YqcA"] "MAEIGIFVGTMYGNSLLVAEEAEAILTAQGHKATVFEDPELSDWLPYQDKYVLVVTSTTGQGDLPDSIVPLFQGIKDSLGFQPNLRYGVIALGDSSYVNFCNGGKQFDALLQEQSAQRVGEMLLIDASENPEPETESNPWVEQWGTLLS" [] [] 0 [] {} 0 "G7449-MONOMER" "tRNA pseudouridine65 synthase" ["TruC", "YqcB"] "MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLLPENERVEFSAPSGQDGEISS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G7450-MONOMER" "DUF446 domain-containing protein YqcC" ["YqcC"] "MTTHDRVRLQLQALEALLREHQHWRNDEPQPHQFNSTQPFFMDTMEPLEWLQWVLIPRMHDLLDNKQPLPGAFAVAPYYEMALATDHPQRALILAELEKLDALFADDAS" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7451-MONOMER" "SecY-interacting protein" ["Ydr", "Syd"] "MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPLL" ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 +"G7451-MONOMER" "SecY-interacting protein" ["Ydr", "Syd"] "MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPLL" ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "G7452-MONOMER" "7-cyano-7-deazaguanine reductase" ["YqcD", "QueF"] "MSSYANHQALAGLTLGKSTDYRDTYDASLLQGVPRSLNRDPLGLKADNLPFHGTDIWTLYELSWLNAKGLPQVAVGHVELDYTSVNLIESKSFKLYLNSFNQTRFNNWDEVRQTLERDLSTCAQGKISVALYRLDELEGQPIGHFNGTCIDDQDITIDNYEFTTDYLENATCGEKVVEETLVSHLLKSNCLITHQPDWGSLQIQYRGRQIDREKLLRYLVSFRHHNEFHEQCVERIFNDLLRFCQPEKLSVYARYTRRGGLDINPWRSNSDFVPSTTRLVRQ" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"G7453-MONOMER" "DUF903 domain-containing lipoprotein YgdI" ["YgdI"] "MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTDNDTGMISYKDANGNKQQINRTDVKEMVELDQ" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 0 +"G7453-MONOMER" "DUF903 domain-containing lipoprotein YgdI" ["YgdI"] "MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTDNDTGMISYKDANGNKQQINRTDVKEMVELDQ" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 "G7454-MONOMER" "cysteine sulfinate desulfinase" ["YgdJ", "CsdA"] "MNVFNPAQFRAQFPALQDAGVYLDSAATALKPEAVVEATQQFYSLSAGNVHRSQFAEAQRLTARYEAAREKVAQLLNAPDDKTIVWTRGTTESINMVAQCYARPRLQPGDEIIVSVAEHHANLVPWLMVAQQTGAKVVKLPLNAQRLPDVDLLPELITPRSRILALGQMSNVTGGCPDLARAITFAHSAGMVVMVDGAQGAVHFPADVQQLDIDFYAFSGHKLYGPTGIGVLYGKSELLEAMSPWLGGGKMVHEVSFDGFTTQSAPWKLEAGTPNVAGVIGLSAALEWLADYDINQAESWSRSLATLAEDALAKRPGFRSFRCQDSSLLAFDFAGVHHSDMVTLLAEYGIALRAGQHCAQPLLAELGVTGTLRASFAPYNTKSDVDALVNAVDRALELLVD" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7455-MONOMER" "sulfur acceptor protein CsdE" ["YgdK", "CsdE", "CSD sulfur transfer protein CsdE"] "MTNPQFAGHPFGTTVTAETLRNTFAPLTQWEDKYRQLIMLGKQLPALPDELKAQAKEIAGCENRVWLGYTVAENGKMHFFGDSEGRIVRGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSASRSQGLNALSEAIIAATKQV" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7456-MONOMER" "tRNA threonylcarbamoyladenosine dehydratase" ["TcdA", "CsdL", "YgdL", "CSD sulfur transfer protein"] "MSVVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFVTPDNVAQYMSVGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQSDGTVCAMKATAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKMMAKAARQG" [] ["CCO-CYTOSOL", "CCO-MEMBRANE"] 0 [] {} 1 @@ -2871,7 +2871,7 @@ "G7458-MONOMER" "N-acetylmuramoyl-L-alanine amidase C" ["YgdN", "AmiC"] "MSGSNTAISRRRLLQGAGAMWLLSVSQVSLAAVSQVVAVRVWPASSYTRVTVESNRQLKYKQFALSNPERVVVDIEDVNLNSVLKGMAAQIRADDPFIKSARVGQFDPQTVRMVFELKQNVKPQLFALAPVAGFKERLVMDLYPANAQDMQDPLLALLEDYNKGDLEKQVPPAQSGPQPGKAGRDRPIVIMLDPGHGGEDSGAVGKYKTREKDVVLQIARRLRSLIEKEGNMKVYMTRNEDIFIPLQVRVAKAQKQRADLFVSIHADAFTSRQPSGSSVFALSTKGATSTAAKYLAQTQNASDLIGGVSKSGDRYVDHTMFDMVQSLTIADSLKFGKAVLNKLGKINKLHKNQVEQAGFAVLKAPDIPSILVETAFISNVEEERKLKTATFQQEVAESILAGIKAYFADGATLARRG" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {"ZN+2": 1} 0 "G7459-MONOMER" "RNA pyrophosphohydrolase" ["NudH", "YgdP", "RppH"] "MIDDDGYRPNVGIVICNRQGQVMWARRFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMSLQENTPKPQNASAYRRKRG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7460-MONOMER" "PF03741 family inner membrane protein YgdQ" ["YgdQ", "UPF0053 inner membrane protein YgdQ"] "MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQRAHARRLGLAGAMVMRLALLASIAWVTRLTNPLFTIFSQEISARDLILLLGGLFLIWKASKEIHESIEGEEEGLKTRVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAAVVIAVGVMMFAARSIGDFVERHPSVKMLALSFLILVGFTLILESFDIHVPKGYIYFAMFFSIAVESLNLIRNKKNPL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7461-MONOMER" "DUF903 domain-containing lipoprotein YgdR" ["YgdR"] "MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 0 +"G7461-MONOMER" "DUF903 domain-containing lipoprotein YgdR" ["YgdR"] "MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 "G7462-MONOMER" "putative NADP(H)-dependent aldo-keto reductase Tas" ["YgdS", "Tas"] "MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLHLELSEDVLAEIEAVHQVYTYPAP" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G7463-MONOMER" "5-dehydro-4-deoxy-D-glucuronate isomerase" ["YqeE", "KduI", "5-keto 4-deoxyuronate isomerase"] "MDVRQSIHSAHAKTLDTQGLRNEFLVEKVFVADEYTMVYSHIDRIIVGGIMPITKTVSVGGEVGKQLGVSYFLERRELGVINIGGAGTITVDGQCYEIGHRDALYVGKGAKEVVFASIDTGTPAKFYYNCAPAHTTYPTKKVTPDEVSPVTLGDNLTSNRRTINKYFVPDVLETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYFYFNMDDDACVFHMMGQPQETRHIVMHNEQAVISPSWSIHSGVGTKAYTFIWGMVGENQVFDDMDHVAVKDLR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 "G7464-MONOMER" "putative acyltransferase" ["YqeF"] "MKDVVIVGALRTPIGCFRGALAGHSAVELGSLVVKALIERTGVPAYAVDEVILGQVLTAGAGQNPARQSAIKGGLPNSVSAITINDVCGSGLKALHLATQAIQCGEADIVIAGGQENMSRAPHVLTDSRTGAQLGNSQLVDSLVHDGLWDAFNDYHIGVTAENLAREYGISRQLQDAYALSSQQKARAAIDAGRFKDEIVPVMTQSNGQTLVVDTDEQPRTDASAEGLARLNPSFDSLGSVTAGNASSINDGAAAVMMMSEAKARALNLPVLARIRAFASVGVDPALMGIAPVYATRRCLERVGWQLAEVDLIEANEAFAAQALSVGKMLEWDERRVNVNGGAIALGHPIGASGCRILVSLVHEMVKRNARKGLATLCIGGGQGVALTIERDE" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -2883,18 +2883,18 @@ "G7471-MONOMER" "TPR repeat-containing putative chaperone YgeG" ["YgeG"] "MSTETIEIFNNSDEWANQLKHALSKGENLALLHGLTPDILDRIYAYAFDYHEKGNITDAEIYYKFLCIYAFENHEYLKDFASVCQPKKKYQQAYDLYKLSYNYFPYDDYSVIYRMGQCQIGAKNIDNAMQCFYHIINNCEDDSVKSKAQAYIELLNDNSEDNG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7472-MONOMER" "putative transcriptional regulator YgeH" ["YgeH"] "MDLENKFSYHFLEGLTLTEDGILTQGNEQVYIPQKELGVLIVLLESAGHVVLKDMIIESVWKNIIVSDESLTRCIYSLRCIFEKIGYDRCIETIYRKGYRFSGQVFKTKINEDNTSDYSIAIFPFTTSLNTLDPLILNQELVQIISNKKIDGLYTYPMAATNFCNDHISQNSFLSRFKPDYFVTGRINQNNAVNTLYIELIDAKNLFLIASNHLPVDELHNTSQFIIDNILQTVHKPERSVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESESHRVIIDNILKLKQLTRICMR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G7473-MONOMER" "protein YgeI" ["YgeI"] "MTNPIGINNLSQSSNIANATGDEVVSLDKHINTSATDTDQIQAFIVSTWMAPFQNDMYSEDNPISPYYKIEW" [] [] 0 [] {} 0 -"G7474-MONOMER" "transglycosylase domain-containing protein Pbl" ["YgeJ", "Pbl"] "MRSPKVKFLTIFTFCIFITKMSFASNSCSNEAGTMFRIEPNLIKAIALVESNLKKDSIGKNRDKNNNIKSLDYWLMQINQMHIPLLKKRGIIKDERDLLDNPCLNIKIGTEILYNHFSRCGVTWQCLGTYNAGFAMDNQKKRQQYAPKYILYIPGLMN*TIVRLQQ" [] ["CCO-PERI-BAC"] 0 [] {} 0 +"G7474-MONOMER" "transglycosylase domain-containing protein Pbl" ["YgeJ", "Pbl"] "MRSPKVKFLTIFTFCIFITKMSFASNSCSNEAGTMFRIEPNLIKAIALVESNLKKDSIGKNRDKNNNIKSLDYWLMQINQMHIPLLKKRGIIKDERDLLDNPCLNIKIGTEILYNHFSRCGVTWQCLGTYNAGFAMDNQKKRQQYAPKYILYIPGLMN*TIVRLQQ" [] [] 0 [] {} 0 "G7475-MONOMER" "putative DNA-binding transcriptional regulator YgeK" ["YgeK"] "MGAELVKWVKSHKIDAHIITFVAKMPYIDSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMDCEKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMGVCTI" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7476-MONOMER" "protein YgeL" ["YgeL"] "MGKIKIVVSDQQPFMIDGIIGFLGHYPDLYEVVGGYKDLKKAIAECNKSTA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7478-MONOMER" "putative type III secretion system protein YgeN" ["YgeM", "YgeN"] "MRKKIEMSLIKSPANGVVIKRKISDGLKEIVSLKEKILLETTAKIQSIEEKREEKFIQGYYDGYTKGIIDEMDNFIPLISLLCSELEKKE*T**TI*RVYC*NLQKKLMFLSKFLKVG*QNYHQYQVL*ISIYLPVSKISLLK*SHILSTNQYGMSILHFMMISVLCFLPINLLLNLVRRNLWIIVSNI*LIIIVSPLTRLTKSANKPDII*LKKCLKHILWI*IILFWQALRT" [] [] 0 [] {} 0 "G7479-MONOMER" "putative uncharacterized protein YgeO" ["YgeO", "ORF_f141"] "MNNWNLLPLICLLSGCHFYRERFAERGFFYKVPDVLRDYLSAIPLEINEKARYKPGIANYHNIITCGFSTLLPYIRQQPLAMQQRFNLLFPDFVDHIQSPLPLASTLLERITFYAKKNRDELDKISCKWCCD" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7480-MONOMER" "IS2 element protein" ["InsD1"] "MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7482-MONOMER" "protein YgeP" ["YgeP"] "MTSGLERLSNLLSKKDSVFVSDLLREAKVNELDETLSTTRLNHLIDKGYERITLQLDLGGESPGYLEKDKHYREADAALLNVIYPTNLSKINTRRKEQV" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7483-MONOMER" "putative lipoprotein YgeQ" ["YgeQ"] "MKGKSALTLLLAGIFSCGTCQATGAEVTSESVFNILNSTGAATDKSYLSLNPDKYPNYRLLIHSAKLQNEIKSHYTKDEIQGLLTLTENTRKLTLTEKPWGTFILASTFEDDKTAAETHYDAVWLRDSLWGYMALVSDQGNSVAAKKVLLTLWDYMSTPDQIKRMQDVISNPKRLDGIPVQMNAVHIRFDSNSPVMADVQEEGKPQLWNHKQNDALGLYLDLLIQAINTGTINAEDWQKGDRLKSVALLIAYLDKANFYVMEDS" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7484-MONOMER" "amidase activator" ["ActS", "YgeR"] "MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQKLKLGGAKSSSITRKSTAKSTTKTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYAAGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLRYLPPQGSKPKC" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] 0 [] {} 0 +"G7483-MONOMER" "putative lipoprotein YgeQ" ["YgeQ"] "MKGKSALTLLLAGIFSCGTCQATGAEVTSESVFNILNSTGAATDKSYLSLNPDKYPNYRLLIHSAKLQNEIKSHYTKDEIQGLLTLTENTRKLTLTEKPWGTFILASTFEDDKTAAETHYDAVWLRDSLWGYMALVSDQGNSVAAKKVLLTLWDYMSTPDQIKRMQDVISNPKRLDGIPVQMNAVHIRFDSNSPVMADVQEEGKPQLWNHKQNDALGLYLDLLIQAINTGTINAEDWQKGDRLKSVALLIAYLDKANFYVMEDS" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7484-MONOMER" "amidase activator" ["ActS", "YgeR"] "MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQKLKLGGAKSSSITRKSTAKSTTKTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYAAGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLRYLPPQGSKPKC" [] ["CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] 0 [] {} 0 "G7485-MONOMER" "putative xanthine dehydrogenase molybdenum-binding subunit XdhA" ["YgeS", "XdhA"] "MRVDAIAKVTGRARYTDDYVMAGMCYAKYVRSPIAHGYAVSINDEQARSLPGVLAIFTWEDVPDIPFATAGHAWTLDENKRDTADRALLTRHVRHHGDAVAIVVARDELTAEKAAQLVSIEWQELPVITTPEAALAEDAAPIHNGGNLLKQSTMSTGNVQQTIDAADYQVQGHYQTPVIQHCHMESVTSLAWMEDDSRITIVSSTQIPHIVRRVVGQALDIPWSCVRVIKPFVGGGFGNKQDVLEEPMAAFLTSKLGGIPVKVSLSREECFLATRTRHAFTIDGQMGVNRDGTLKGYSLDVLSNTGAYASHGHSIASAGGNKVAYLYPRCAYAYSSKTCYTNLPSAGAMRGYGAPQVVFAVESMLDDAATALGIDPVEIRLRNAAREGDANPLTGKRIYSAGLPECLEKGRKIFEWEKRRAECQNQQGNLRRGVGVACFSYTSNTWPVGVEIAGARLLMNQDGTINVQSGATEIGQGADTVFSQMVAETVGVPVSDVRVISTQDTDVTPFDPGAFASRQSYVAAPALRSAALLLKEKIIAHAAVMLHQSAMNLTLIKGHIVLVERPEEPLMSLKDLAMDAFYHPERGGQLSAESSIKTTTNPPAFGCTFVDLTVDIALCKVTINRILNVHDSGHILNPLLAEGQVHGGMGMGIGWALFEEMIIDAKSGVVRNPNLLDYKMPTMPDLPQLESAFVEINEPQSAYGHKSLGEPPIIPVAAAIRNAVKMATGVAINTLPLTPKRLYEEFHLAGLI" [] ["CCO-CYTOSOL"] 0 [] {"CPD-8123": 1} 1 "G7486-MONOMER" "putative xanthine dehydrogenase FAD-binding subunit XdhB" ["XdhB", "YgeT"] "MFDFASYHRAATLADAINLLADNPQAKLLAGGTDVLIQLHHHNDRYRHIVDIHNLAELRGITLAEDGSLRIGSATTFTQLIEDPITQRHLPALCAAATSIAGPQIRNVATYGGNICNGATSADSATPTLIYDAKLEIHSPRGVRFVPINGFHTGPGKVSLEHDEILVAFHFPPQPKEHAGSAHFKYAMRDAMDISTIGCAAHCRLDNGNFSELRLAFGVAAPTPIRCQHAEQTAQNAPLNLQTLEAISESVLQDVAPRSSWRASKEFRLHLIQTMTKKVISEAVAAAGGKLQ" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G7487-MONOMER" "putative xanthine dehydrogenase iron-sulfur-binding subunit XdhC" ["YgeU", "XdhC"] "MNHSETITIECTINGMPFQLHAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEAKGGKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAKPREKPLTITEIRRGLAGNLCRCTGYQMIVNTVLDCEKTK" [] ["CCO-CYTOSOL"] 0 [] {"CPD-6": 1} 1 +"G7487-MONOMER" "putative xanthine dehydrogenase [Fe-S]-binding subunit XdhC" ["YgeU", "XdhC", "putative xanthine dehydrogenase iron-sulfur-binding subunit XdhC"] "MNHSETITIECTINGMPFQLHAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEAKGGKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAKPREKPLTITEIRRGLAGNLCRCTGYQMIVNTVLDCEKTK" [] ["CCO-CYTOSOL"] 0 [] {"CPD-6": 1} 1 "G7488-MONOMER" "putative σ54-dependent transcriptional regulator YgeV" ["YgeV"] "MELATTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLNT" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7489-MONOMER" "putative carbamoyltransferase YgeW" ["YgeW"] "MMKTVNELIKDINSLTSHLHEKDFLLTWEQTPDELKQVLDVAAALKALRAENISTKVFNSGLGISVFRDNSTRTRFSYASALNLLGLAQQDLDEGKSQIAHGETVRETANMISFCADAIGIRDDMYLGAGNAYMREVGAALDDGYKQGVLPQRPALVNLQCDIDHPTQSMADLAWLREHFGSLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEAFKDADIVYPKSWAPYKVMEERTELLRANDHEGLKALEKQCLAQNAQHKDWHCTEEMMELTRDGEALYMHCLPADISGVSCKEGEVTEGVFEKYRIATYKEASWKPYIIAAMILSRKYAKPGALLEQLLKEAQERVK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7490-MONOMER" "2,3-diaminopropionate ammonia-lyase" ["YgeX"] "MSVFSLKIDIADNKFFNGETSPLFSQSQAKLARQFHQKIAGYRPTPLCALDDLANLFGVKKILVKDESKRFGLNAFKMLGGAYAIAQLLCEKYHLDIETLSFEHLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDDTVRLTMQHAQQHGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGDMATIMAGLACGEPNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGESGAVGLGVLAAVHYHPQRQSLMEKLALNKDAVVLVISTEGDTDVKHYREVVWEGKHAVAP" [] ["CCO-CYTOSOL"] 1 [] {} 1 @@ -2912,7 +2912,7 @@ "G7504-MONOMER" "guanine/hypoxanthine transporter GhxQ" ["GhxQ", "YgfR", "YgfQ"] "MSGDILQTPDAPKPQGALDNYFKITARGSTVRQEVLAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGFGSLLMGLWANLPMAIGCAISLTAFTAFSLVLGQQISVPVALGAVFLMGVIFTAISVTGVRTWILRNLPMGIAHGTGIGIGLFLLLIAANGVGMVIKNPIEGLPVALGAFTSFPVMMSLLGLAVIFGLEKCRVPGGILLVIIAISIIGLIFDPAVKYHGLVAMPSLTGEDGKSLIFSLDIMGALQPTVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDNQIINGGKALTSDSVSSIFSGLVGAAPAAVYIESAAGTAAGGKTGLTATVVGALFLLILFLSPLSFLIPGYATAPALMYVGLLMLSNVSKLDFNDFIDAMAGLVCAVFIVLTCNIVTGIMLGFVTLVVGRVFAREWQKLNIGTVIITAALVAFYAGGWAI" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 "G7505-MONOMER" "putative electron transport protein YgfS" ["YgfS", "putative oxidoreductase, 4Fe-4S ferredoxin-type subunit"] "MKSLIIVNPADCIGCRTCEVACVVAHPSEQELNADVFLPRLKVQRLDSISAPVMCHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGDTRQQIVKCDLCEQREEGPACVESCPTQALQLLTERELRRVRQQRIVASGENPL" [] ["CCO-PM-BAC-NEG"] 0 [] {"CPD-7": 4} 0 "G7506-MONOMER" "putative oxidoreductase YgfT" ["YgfT", "fused putative oxidoreductase, Fe-S subunit and nucleotide-binding subunit"] "MNKFIAAEAAECIGCHACEIACAVAHNQENWPLSHSDFRPRIHVVGKGQAANPVACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDKGLQQIKVARQRKTAAGKASSDAQPSRSAALLPVNSRKGADKISASERKTHFGEIYCGLDPQQATYESDRCVYCAEKANCNWHCPLHNAIPDYIRLVQEGKIIEAAELCHQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFSDLTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFDTKAS" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 5} 0 -"G7509-MONOMER" "protein YgfX" ["CptA", "YgfX", "toxin of the CptA-CptB toxin-antitoxin system"] "MVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMVLLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQEWSIVKAPWMIKSGMMLRLRSDGGKRQHLWLAADSMDEAEWRDLRRILLQQETQR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7509-MONOMER" "protein YgfX" ["CptA", "YgfX", "toxin of the CptA-CptB toxin-antitoxin system"] "MVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMVLLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQEWSIVKAPWMIKSGMMLRLRSDGGKRQHLWLAADSMDEAEWRDLRRILLQQETQR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7510-MONOMER" "FAD assembly factor" ["SdhE", "YgfY", "CptB", "antitoxin of the CptA-CptB toxin-antitoxin system"] "MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRNRERGPVAI" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7511-MONOMER" "folate-binding protein YgfZ" ["YzzW", "YgfZ"] "MAFTPFPPRQPTASARLPLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDGDGFAWIERRSVREPQLTELKKYAVFSKVTIAPDDERVLLGVAGFQARAALANLFSELPSKEKQVVKEGATTLLWFEHPAERFLIVTDEATANMLTDKLRGEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGANKRALWLLAGSASRLPEAGEDLELKMGENWRRTGTVLAAVKLEDGQVVVQVVMNNDMEPDSIFRVRDDANTLHIEPLPYSLEE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "G7512-MONOMER" "transmembrane homeostasis protein A" ["YqfA", "TrhA"] "MVQKPLIKQGYSLAEEIANSVSHGIGLVFGIVGLVLLLVQAVDLNASATAITSYSLYGGSMILLFLASTLYHAIPHQRAKMWLKKFDHCAIYLLIAGTYTPFLLVGLDSPLARGLMIVIWSLALLGILFKLTIAHRFKILSLVTYLAMGWLSLVVIYEMAVKLAAGSVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSVCHFLAIYLYIGQA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -2935,17 +2935,17 @@ "G7530-MONOMER" "dITP/XTP pyrophosphatase" ["YggV", "RdgB"] "MQKVVLATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAILKARHAAKVTALPAIADDSGLAVDVLGGAPGIYSARYSGEDATDQKNLQKLLETMKDVPDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTAAELTREEKSAISHRGQALKLLLDALRNG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "G7531-MONOMER" "heme chaperone HemW" ["HemW", "YggW"] "MVKLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLDNDVAYAQGREVKTIFIGGGTPSLLSGPAMQTLLDGVRARLPLAADAEITMEANPGTVEADRFVDYQRAGVNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSFNLDLMHGLPDQSLEEALGDLRQAIELNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAYAKPGYQCQHNLNYWRFGDYIGIGCGAHGKVTFPDGRILRTTKTRHPRGFMQGRYLESQRDVEATDKPFEFFMNRFRLLEAAPRVEFIAYTGLCEDVIRPQLDEAIAQGYLTECADYWQITEHGKLFLNSLLELFLAE" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 1 "G7532-MONOMER" "putative Fe2+-trafficking protein" ["YggX", "protein that protects iron-sulfur proteins against oxidative damage"] "MSRTIFCTFLQREAEGQDFQLYPGELGKRIYNEISKEAWAQWQHKQTMLINEKKLNMMNAEHRKLLEQEMVNFLFEGKEVHIEGYTPEDKK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 -"G7533-MONOMER" "membrane-bound lytic murein transglycosylase C" ["YggZ", "MltC"] "MKKYLALALIAPLLISCSTTKKGDTYNEAWVKDTNGFDILMGQFAHNIENIWGFKEVVIAGPKDYVKYTDQYQTRSHINFDDGTITIETIAGTEPAAHLRRAIIKTLLMGDDPSSVDLYSDVDDITISKEPFLYGQVVDNTGQPIRWEGRASNFADYLLKNRLKSRSNGLRIIYSVTINMVPNHLDKRAHKYLGMVRQASRKYGVDESLILAIMQTESSFNPYAVSRSDALGLMQVVQHTAGKDVFRSQGKSGTPSRSFLFDPASNIDTGTAYLAMLNNVYLGGIDNPTSRRYAVITAYNGGAGSVLRVFSNDKIQAANIINTMTPGDVYQTLTTRHPSAESRRYLYKVNTAQKSYRRR" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 -"G7534-MONOMER" "DUF554 domain-containing protein YqgA" ["YqgA"] "MVIGPFINASAVLLGGVLGALLSQRLPERIRVSMTSIFGLASLGIGILLVVKCANLPAMVLATLLGALIGEICLLEKGVNTAVAKAQNLFRHSRKKPAHESFIQNYVAIIVLFCASGTGIFGAMNEGMTGDPSILIAKSFLDFFTAMIFACSLGIAVSVISIPLLIIQLTLAWAAALILPLTTPSMMADFSAVGGLLLLATGLRICGIKMFPVVNMLPALLLAMPLSAAWTAWFA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7535-MONOMER" "putative type II secretion system M-type protein YghD" ["EcfC", "YghD"] "MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSVGYYVLIWQPLSERIEQQETILQQLVAMNTRLKNAAPDIIAARKSATTTPAQVSRVISDSASAHSVVIRRIADRGENIQVWIEPVVFNDLLKWLNALDEKYALRVTQIDVSAAEKPGMVNVQRLEFGRG" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7536-MONOMER" "putative type II secretion system L-type protein YghE" ["EcfB", "YghE"] "MIHQQHMRNIAQWLQENGITRATVAPDWMSIPCGFMACDAQRVICRIDECRGWSAGLALAPVMFRAQLNEQDLPLSLTVVGIAPEKLSAWAGADAERLTVTALPAITTYGEPEGNLLTGPWQPRVSYRKQWARWRVMILPILLILVALAVERGVTLWSVSEQVAQSRTQAEEQFLTLFPEQKRIVNLRSQVTMALKKYRPQADDTRLLAELSAIASTLKSASLSDIEMRGFTFDQKRQILHLQLRAANFASFDKLRSVLATDYVVQQDALQKEGDAVSGGVTLRRK" [] ["CCO-MEMBRANE", "CCO-CW-BAC-NEG", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7537-MONOMER" "putative type II secretion system C-type protein YghF" ["EcfA", "YghF"] "MARVVFRDARIYLIQWLTKIRHTLNQRQSLNTDKEHLRKIARGMFWLMLLIISAKMAHSLWRYISFSAEYTAVSQPVNKPSRVDAKTFDKNDVQLISQQNWFGKYQPVAAQVKQPEPVPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGETLGSHNAVIEEINRDHVMLRYQGKIERLSLAEEERSTVAVTNKKAVSDEAKQAVAEPAVSVPVEIPAAVRQALAKDPQKIFNYIQLTPVRKEGIVGYAAKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIALRYRLFCPPYWKKS" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7538-MONOMER" "lipoprotein YghG" ["YghG", "GspSβ"] "MSIKQMPGRVLISLLLSVTGLLSGCASHNENASLLAKKQAQNISQNLPIKSAGYTLVLAQSSGTTVKMTIISEAGTQTTQTPDAFLTSYQRQMCADPTVKLMITEGINYSITINDTRTGNQYQRKLDRTTCGIVKA" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"G7533-MONOMER" "membrane-bound lytic murein transglycosylase C" ["YggZ", "MltC"] "MKKYLALALIAPLLISCSTTKKGDTYNEAWVKDTNGFDILMGQFAHNIENIWGFKEVVIAGPKDYVKYTDQYQTRSHINFDDGTITIETIAGTEPAAHLRRAIIKTLLMGDDPSSVDLYSDVDDITISKEPFLYGQVVDNTGQPIRWEGRASNFADYLLKNRLKSRSNGLRIIYSVTINMVPNHLDKRAHKYLGMVRQASRKYGVDESLILAIMQTESSFNPYAVSRSDALGLMQVVQHTAGKDVFRSQGKSGTPSRSFLFDPASNIDTGTAYLAMLNNVYLGGIDNPTSRRYAVITAYNGGAGSVLRVFSNDKIQAANIINTMTPGDVYQTLTTRHPSAESRRYLYKVNTAQKSYRRR" [] ["CCO-OUTER-MEM"] 0 [] {} 0 +"G7534-MONOMER" "DUF554 domain-containing protein YqgA" ["YqgA"] "MVIGPFINASAVLLGGVLGALLSQRLPERIRVSMTSIFGLASLGIGILLVVKCANLPAMVLATLLGALIGEICLLEKGVNTAVAKAQNLFRHSRKKPAHESFIQNYVAIIVLFCASGTGIFGAMNEGMTGDPSILIAKSFLDFFTAMIFACSLGIAVSVISIPLLIIQLTLAWAAALILPLTTPSMMADFSAVGGLLLLATGLRICGIKMFPVVNMLPALLLAMPLSAAWTAWFA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7535-MONOMER" "putative type II secretion system M-type protein YghD" ["EcfC", "YghD"] "MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSVGYYVLIWQPLSERIEQQETILQQLVAMNTRLKNAAPDIIAARKSATTTPAQVSRVISDSASAHSVVIRRIADRGENIQVWIEPVVFNDLLKWLNALDEKYALRVTQIDVSAAEKPGMVNVQRLEFGRG" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7536-MONOMER" "putative type II secretion system L-type protein YghE" ["EcfB", "YghE"] "MIHQQHMRNIAQWLQENGITRATVAPDWMSIPCGFMACDAQRVICRIDECRGWSAGLALAPVMFRAQLNEQDLPLSLTVVGIAPEKLSAWAGADAERLTVTALPAITTYGEPEGNLLTGPWQPRVSYRKQWARWRVMILPILLILVALAVERGVTLWSVSEQVAQSRTQAEEQFLTLFPEQKRIVNLRSQVTMALKKYRPQADDTRLLAELSAIASTLKSASLSDIEMRGFTFDQKRQILHLQLRAANFASFDKLRSVLATDYVVQQDALQKEGDAVSGGVTLRRK" [] ["CCO-CW-BAC-NEG", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7537-MONOMER" "putative type II secretion system C-type protein YghF" ["EcfA", "YghF"] "MARVVFRDARIYLIQWLTKIRHTLNQRQSLNTDKEHLRKIARGMFWLMLLIISAKMAHSLWRYISFSAEYTAVSQPVNKPSRVDAKTFDKNDVQLISQQNWFGKYQPVAAQVKQPEPVPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGETLGSHNAVIEEINRDHVMLRYQGKIERLSLAEEERSTVAVTNKKAVSDEAKQAVAEPAVSVPVEIPAAVRQALAKDPQKIFNYIQLTPVRKEGIVGYAAKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIALRYRLFCPPYWKKS" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7538-MONOMER" "outer membrane pilotin" ["YghG", "GspSβ"] "MSIKQMPGRVLISLLLSVTGLLSGCASHNENASLLAKKQAQNISQNLPIKSAGYTLVLAQSSGTTVKMTIISEAGTQTTQTPDAFLTSYQRQMCADPTVKLMITEGINYSITINDTRTGNQYQRKLDRTTCGIVKA" [] ["CCO-OUTER-MEM"] 0 [] {} 0 "G7539-MONOMER" "prepilin peptidase" ["YghH", "PppA"] "MLFDVFQQYPTAMPVLATVGGLIIGSFLNVVIWRYPIMLRQQMAEFHGEMSSAQSKISLALPRSHCPHCQQTIRIRDNIPLFSWLMLKGRCRDCQAKISKRYPLVELLTALAFLLASLVWPESGWGLAVMILSAWLIAASVIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFITFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVGALSLPNVALIASCCGLIYAVITKRGSTTLPFGPCLSLGGIATLYLQALF" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7541-MONOMER" "putative lipoprotein YghJ" ["SslE", "YghJ"] "MNKKFKYKKSLLAAILSATLLAGCDGGGSGSSSDTPPVDSGTGSLPEVKPDPTPNPEPTPEPTPDPEPTPEPIPDPEPTPEPEPEPVPTKTGYLTLGGSQRVTGATCNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVSFSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQIDLAPEEFKKLVNEEVENNAATDKAPSTHTSPVVPVTTPGTKPDLNASFVSANAEQFYQYQPTEIILSEGRLVDSQGYGVAGVNYYTNSGRGVTGENGEFSFSWGETISFGIDTFELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINEIINLSLSNGATLGEGEQVVNLPNEFIEQFNTGQAKEIDTAICAKTDGCNEARWFSLTTRNVNDGQIQGVINKLWGVDTNYKSVSKFHVFHDSTNFYGSTGNARGQAVVNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFISLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYLSDDKWKPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQEMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSNLKEESASGFVRLLDAAGLSMALNKSVVNNDPQGYPNRVRQQRATGIWVYERYPAVDGALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDGKQETRYAFIDEADHKTEDSLKAAKEKIFAAFPGLKECTNPAYHYEVNCLEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSADLKKSLVDNNMIYGDGSSKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGAVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANVPVTVTVALADDLTGREKHEVALNRPPRVTKTYSLDASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGVVKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTFASSMNDFYGRDSEDGKHRMFTYKNLPGHKHRFTNDVQISIGDAHSGYPVMNSSFSPNSTTLPTTPLNDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEYLEESNNQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWNLFQLMHRKARGDEVSNDKFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANAYQLPGASEMSFEGGVSQSAYNTLASLDLPKPEQGPETINQVTEHKMSAE" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"G7541-MONOMER" "putative mayloidogenic protein" ["SslE", "YghJ", "lipoprotein"] "MNKKFKYKKSLLAAILSATLLAGCDGGGSGSSSDTPPVDSGTGSLPEVKPDPTPNPEPTPEPTPDPEPTPEPIPDPEPTPEPEPEPVPTKTGYLTLGGSQRVTGATCNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVSFSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQIDLAPEEFKKLVNEEVENNAATDKAPSTHTSPVVPVTTPGTKPDLNASFVSANAEQFYQYQPTEIILSEGRLVDSQGYGVAGVNYYTNSGRGVTGENGEFSFSWGETISFGIDTFELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINEIINLSLSNGATLGEGEQVVNLPNEFIEQFNTGQAKEIDTAICAKTDGCNEARWFSLTTRNVNDGQIQGVINKLWGVDTNYKSVSKFHVFHDSTNFYGSTGNARGQAVVNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFISLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYLSDDKWKPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQEMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSNLKEESASGFVRLLDAAGLSMALNKSVVNNDPQGYPNRVRQQRATGIWVYERYPAVDGALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDGKQETRYAFIDEADHKTEDSLKAAKEKIFAAFPGLKECTNPAYHYEVNCLEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSADLKKSLVDNNMIYGDGSSKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGAVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANVPVTVTVALADDLTGREKHEVALNRPPRVTKTYSLDASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGVVKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTFASSMNDFYGRDSEDGKHRMFTYKNLPGHKHRFTNDVQISIGDAHSGYPVMNSSFSPNSTTLPTTPLNDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEYLEESNNQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWNLFQLMHRKARGDEVSNDKFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANAYQLPGASEMSFEGGVSQSAYNTLASLDLPKPEQGPETINQVTEHKMSAE" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7543-MONOMER" "putative heme-binding protein GlcG" ["YghC", "GlcG", "conserved protein GlcG"] "MKTKVILSQQMASAIIAAGQEEAQKNNWSVSIAVADDGGHLLALSRMDDCAPIAAYISQEKARTAALGRRETKGYEEMVNNGRTAFVTAPLLTSLEGGVPVVVDGQIIGAVGVSGLTGAQDAQVAKAAAAVLAK" [] ["CCO-MEMBRANE"] 0 [] {} 0 -"G7544-MONOMER" "glycolate dehydrogenase, putative FAD-binding subunit" ["Gox", "YghL", "GlcE"] "MLRECDYSQALLEQVNQAISDKTPLVIQGSNSKAFLGRPVTGQTLDVRCHRGIVNYDPTELVITARVGTPLVTIEAALESAGQMLPCEPPHYGEEATWGGMVACGLAGPRRPWSGSVRDFVLGTRIITGAGKHLRFGGEVMKNVAGYDLSRLMVGSYGCLGVLTEISMKVLPRPRASLSLRREISLQEAMSEIAEWQLQPLPISGLCYFDNALWIRLEGGEGSVKAARELLGGEEVAGQFWQQLREQQLPFFSLPGTLWRISLPSDAPMMDLPGEQLIDWGGALRWLKSTAEDNQIHRIARNAGGHATRFSAGDGGFAPLSAPLFRYHQQLKQQLDPCGVFNPGRMYAEL" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"G7545-MONOMER" "glycolate dehydrogenase, putative FAD-linked subunit" ["YghM", "Gox", "GlcD"] "MSILYEERLDGALPDVDRTSVLMALREHVPGLEILHTDEEIIPYECDGLSAYRTRPLLVVLPKQMEQVTAILAVCHRLRVPVVTRGAGTGLSGGALPLEKGVLLVMARFKEILDINPVGRRARVQPGVRNLAISQAVAPHNLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKIEVQTLDGEALTLGSDALDSPGFDLLALFTGSEGMLGVTTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIANGIIPGGLEMMDNLSIRAAEDFIHAGYPVDAEAILLCELDGVESDVQEDCERVNDILLKAGATDVRLAQDEAERVRFWAGRKNAFPAVGRISPDYYCMDGTIPRRALPGVLEGIARLSQQYDLRVANVFHAGDGNMHPLILFDANEPGEFARAEELGGKILELCVEVGGSISGEHGIGREKINQMCAQFNSDEITTFHAVKAAFDPDGLLNPGKNIPTLHRCAEFGAMHVHHGHLPFPELERF" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 +"G7544-MONOMER" "glycolate dehydrogenase, predicted FAD-binding subunit" ["Gox", "YghL", "GlcE"] "MLRECDYSQALLEQVNQAISDKTPLVIQGSNSKAFLGRPVTGQTLDVRCHRGIVNYDPTELVITARVGTPLVTIEAALESAGQMLPCEPPHYGEEATWGGMVACGLAGPRRPWSGSVRDFVLGTRIITGAGKHLRFGGEVMKNVAGYDLSRLMVGSYGCLGVLTEISMKVLPRPRASLSLRREISLQEAMSEIAEWQLQPLPISGLCYFDNALWIRLEGGEGSVKAARELLGGEEVAGQFWQQLREQQLPFFSLPGTLWRISLPSDAPMMDLPGEQLIDWGGALRWLKSTAEDNQIHRIARNAGGHATRFSAGDGGFAPLSAPLFRYHQQLKQQLDPCGVFNPGRMYAEL" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"G7545-MONOMER" "glycolate dehydrogenase, predicted FAD-linked subunit" ["YghM", "Gox", "GlcD"] "MSILYEERLDGALPDVDRTSVLMALREHVPGLEILHTDEEIIPYECDGLSAYRTRPLLVVLPKQMEQVTAILAVCHRLRVPVVTRGAGTGLSGGALPLEKGVLLVMARFKEILDINPVGRRARVQPGVRNLAISQAVAPHNLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKIEVQTLDGEALTLGSDALDSPGFDLLALFTGSEGMLGVTTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIANGIIPGGLEMMDNLSIRAAEDFIHAGYPVDAEAILLCELDGVESDVQEDCERVNDILLKAGATDVRLAQDEAERVRFWAGRKNAFPAVGRISPDYYCMDGTIPRRALPGVLEGIARLSQQYDLRVANVFHAGDGNMHPLILFDANEPGEFARAEELGGKILELCVEVGGSISGEHGIGREKINQMCAQFNSDEITTFHAVKAAFDPDGLLNPGKNIPTLHRCAEFGAMHVHHGHLPFPELERF" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 "G7546-MONOMER" "DNA-binding transcriptional dual regulator GlcC" ["YghN", "GlcC"] "MKDERRPICEVVAESIERLIIDGVLKVGQPLPSERRLCEKLGFSRSALREGLTVLRGRGIIETAQGRDSRVARLNRVQDTSPLIHLFSTQPRTLYDLLDVRALLEGESARLAATLGTQADFVVITRCYEKMLAASENNKEISLIEHAQLDHAFHLAICQASHNQVLVFTLQSLTDLMFNSVFASVNNLYHRPQQKKQIDRQHARIYNAVLQRLPHVAQRAARDHVRTVKKNLHDIELEGHHLIRSAVPLEMNLS" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7547-MONOMER" "putative DNA-binding transcriptional regulator YghO" ["YghO"] "MMNPVLWLQMTNMISYQGLVRTFLNKNDLKAFIAFPSSLYPDDPNWIPPLFIERNEHLSAKNPGTDHIIWQAWVAKKAGQIVGRITAQIDTLHRERYGKDTGHFGMIDAIDDPQVFAALFGAAEAWLKSQGASKISGPFSLNINQESGLLIEGFDTPPCAMMPHGKPWYAAHIEQLGYHKGIDLLAWWMQRTDLTFSPALKKLMDQVRKKVTIRCINRQRFAEEMQILREIFNSGWQHNWGFVPFTEHEFATMGDQLKYLVPDDMIYIAEIDSAPCAFIVGLPNINEAIADLNGSLFPFGWAKLLWRLKVSGVRTARVPLMGVRDEYQFSRIGPVIALLLIEALRDPFARRKIDALEMSWILETNTGMNNMLERIGAEPYKRYRLYEKQI" [] [] 0 [] {} 0 "G7549-MONOMER" "putative transport protein YghQ" ["YghQ"] "MAGFNIKHWFADGAFRTIIRNSAWLGSSNVVSALLGLLALSCAGKGMTPAMFGVLVIVQSYAKSISDFIKFQTWQLVVQYGTPALTNNNPQQFRNVVSFSFSLDIVSGAVAIVGGIALLPFLSHSLGLDDQSFWLAALYCTLIPSMASSTPTGILRAVDRFDLIAVQQATKPFLRAAGSVVAWYFDFGFAGFVIAWYVSNLVGGTMYWWFAARELRRRNIHNAFKLNLFESARYIKGAWSFVWSTNIAHSIWSARNSCSTVLVGIVLGPAAAGLFKIAMTFFDAAGTPAGLLGKSFYPEVMRLDPRTTRPWLLGVKSGLLAGGIGILVALAVLIVGKPLISLVFGVKYLEAYDLI" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -2956,18 +2956,18 @@ "G7555-MONOMER" "DUF2623 domain-containing protein YghW" ["YghW"] "MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMYEKTGDRQLSAWEAGILTRRYGLDKEMVMDFFRENNSCSTLRFFMAGYRLEN" [] [] 0 [] {} 0 "G7557-MONOMER" "putative hydrolase fragment" ["YghY", "ORF_f141", "YghX"] "MTITLTGKSRNVSSSTLRRSAVGGMTALALFDLLKPNYALATQVEFTDPEIVAEYITYPSPNGHGEVRGYLVKPAKMSGKTPAVVVVHENRGLNPYIEDVARRVAKAGYIALAPDGLSSVGGYPGNDDKGRELQQQVDPTN**MISLPQLSLCNAIRKRQAKWVLPDFAMAVAYRTRRLSRIRNWPARCRFMVVRHPLPMWRRLKRLYYSTSRNWTPESTRAGLLTRRR*KPIIRFMRRISIRGLITDSIMIPRPVMTNLPPILPGKGH*NGSINIS" [] [] 0 [] {} 0 "G7558-MONOMER" "L-glyceraldehyde 3-phosphate reductase" ["Gpr", "MgrA", "YghZ", "AKR14A1"] "MVWLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKELAQIDQHIADGELNLWQASSDK" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7559-MONOMER" "UPF0114 family protein YqhA" ["YqhA"] "MERFLENAMYASRWLLAPVYFGLSLALVALALKFFQEIIHVLPNIFSMAESDLILVLLSLVDMTLVGGLLVMVMFSGYENFVSQLDISENKEKLNWLGKMDATSLKNKVAASIVAISSIHLLRVFMDAKNVPDNKLMWYVIIHLTFVLSAFVMGYLDRLTRHNH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7559-MONOMER" "UPF0114 family protein YqhA" ["YqhA"] "MERFLENAMYASRWLLAPVYFGLSLALVALALKFFQEIIHVLPNIFSMAESDLILVLLSLVDMTLVGGLLVMVMFSGYENFVSQLDISENKEKLNWLGKMDATSLKNKVAASIVAISSIHLLRVFMDAKNVPDNKLMWYVIIHLTFVLSAFVMGYLDRLTRHNH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7563-MONOMER" "DNA-binding transcriptional activator YqhC" ["YqhC"] "MLQNCAQSNCRIIPKKLRDMKREEICRLLADKVNKLKNKENSLSGLLPDVRLLYGETPFARTPVMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTVPLPFECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEHFQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILGKQIIREILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRAMQGN" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7564-MONOMER" "NADPH-dependent aldehyde reductase YqhD" ["YqhD"] "MNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIQDRFAEGILLTLIEDGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAAR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 "G7566-MONOMER" "DUF3828 domain-containing protein YqhG" ["YqhF", "YqhG"] "MKIILLFLAALASFTVHAQPPSQTVEQTVRHIYQNYKSDATAPYFGETGERAITSARIQQALTLNDNLTLPGNIGWLDYDPVCDCQDFGDLVLESVAITQTDADHADAVVRFRIFKDDKEKTTQTLKMVAENGRWVIDDIVSNHGSVLQAVNSENEKTLAALASLQKEQPEAFVAELFEHIADYSWPWTWVVSDSYRQAVNAFYKTTFKTANNPDEDMQIERQFIYDNPICFGEESLFSRVDEIRVLEKTADSARIHVRFTLTNGNNEEQELVLQRREGKWEIADFIRPNSGSLLKQIEAKTAARLKQ" [] [] 0 [] {} 0 "G7567-MONOMER" "lipoprotein YqhH" ["YqhH"] "MKTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQDYFDCLRCLRMYAE" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 "G7568-MONOMER" "radical SAM superfamily protein YgiQ" ["YgiR", "YgiQ"] "MSSISLIQPDRDLFSWPQYWAACFGPAPFLPMSREEMDQLGWDSCDIILVTGDAYVDHPSFGMAICGRMLEAQGFRVGIIAQPDWSSKDDFMRLGKPNLFFGVTAGNMDSMINRYTADRRLRHDDAYTPDNVAGKRPDRATLVYTQRCKEAWKDVPVILGGIEASLRRTAHYDYWSDTVRRSVLVDSKADMLMFGNGERPLVEVAHRLAMGEPISEIRDVRNTAIIVKEALPGWSGVDSTRLDTPGKIDPIPHPYGEDLPCADNKPVAPKKQEAKAVTVQPPRPKPWEKTYVLLPSFEKVKGDKVLYAHASRILHHETNPGCARALMQKHGDRYVWINPPAIPLSTEEMDSVFALPYKRVPHPAYGNARIPAYEMIRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANMYMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYDIAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGKEQYLIPYFISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLAKIGYKSEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLVPAPTIEEMREARRQNRNTRPALTKHTPMATQRQTPATAKKASSTQSRPVNAGAKKRPKAAVGR" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 0 -"G7571-MONOMER" "antitoxin of the MqsRA toxin-antitoxin system / DNA-binding transcriptional repressor MqsA" ["MqsA", "YgiT"] "MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKEESDAFMAQVKAFRASVNAETVAPEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPSTIKLLRVLDKHPELLNEIR" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 +"G7571-MONOMER" "antitoxin of the MqsRA TA system / DNA-binding transcriptional repressor MqsA" ["MqsA", "YgiT", "antitoxin of the MqsRA toxin-antitoxin system"] "MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKEESDAFMAQVKAFRASVNAETVAPEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPSTIKLLRVLDKHPELLNEIR" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 "G7572-MONOMER" "mRNA interferase toxin MqsR" ["YgiU", "MqsR", "mRNA interferase / toxin of the MqsR-MqsA toxin-antitoxin system"] "MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTTYSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKEK" [] [] 0 [] {} 1 "G7573-MONOMER" "DNA-binding transcriptional repressor YgiV" ["YgiV"] "MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7574-MONOMER" "BOF family protein YgiW" ["VisP", "YgiW", "stress-induced protein"] "MKKFAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKVNP" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 "G7575-MONOMER" "DNA-binding transcriptional activator QseB" ["YgiX", "QseB", "QseB response regulator"] "MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7577-MONOMER" "DUF2645 domain-containing inner membrane protein YgiZ" ["YgiZ"] "MLKQKIKTIFEALLYIMLTYWLIDSFFAFNKYDWMLESGGNICSIPSVSGEDRILQAMIAAFFLLTPLIILILRKLFMREMFEFWVYVFSLGICLVCGWWLFWGRFIFCY" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7577-MONOMER" "DUF2645 domain-containing inner membrane protein YgiZ" ["YgiZ"] "MLKQKIKTIFEALLYIMLTYWLIDSFFAFNKYDWMLESGGNICSIPSVSGEDRILQAMIAAFFLLTPLIILILRKLFMREMFEFWVYVFSLGICLVCGWWLFWGRFIFCY" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7578-MONOMER" "esterase YqiA" ["YzzI", "YqiA"] "MSTLLYLHGFNSSPRSAKASLLKNWLAEHHPDVEMIIPQLPPYPSDAAELLESIVLEHGGDSLGIVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDYLGQNENPYTGQQYVLESRHIYDLKVMQIDPLEAPDLIWLLQQTGDEVLDYRQAVAYYASCRQTVIEGGNHAFTGFEDYFNPIVDFLGLHHL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7579-MONOMER" "cAMP phosphodiesterase" ["CpdA", "Icc"] "MESLLTLPLAGEARVRILQITDTHLFAQKHEALLGVNTWESYQAVLEAIRPHQHEFDLIVATGDLAQDQSSAAYQHFAEGIASFRAPCVWLPGNHDFQPAMYSALQDAGISPAKRVFIGEQWQILLLDSQVFGVPHGELSEFQLEWLERKLADAPERHTLLLLHHHPLPAGCSWLDQHSLRNAGELDTVLAKFPHVKYLLCGHIHQELDLDWNGRRLLATPSTCVQFKPHCSNFTLDTIAPGWRTLELHADGTLTTEVHRLADTRFQPDTASEGY" [] ["CCO-CYTOSOL"] 0 [] {"FE+2": 2} 0 "G7580-MONOMER" "DUF1249 domain-containing protein YqiB" ["YzzH", "YqiB"] "MKRYTPDFPEMMRLCEMNFSQLRRLLPRNDAPGETVSYQVANAQYRLTIVESTRYTTLVTIEQTAPAISYWSLPSMTVRLYHDAMVAEVCSSQQIFRFKARYDYPNKKLHQRDEKHQINQFLADWLRYCLAHGAMAIPVY" [] [] 0 [] {} 0 @@ -2975,10 +2975,10 @@ "G7585-MONOMER" "putative outer membrane usher protein YqiG" [] "MYKKLKLTTISELIKNIYCSLSVIIIGCASAYAVEFNKDLIEAEDRENVNLSQFETDGQLPVGKYSLSTLINNKRTPIHLDLQWVLIDNQTAVCVTPEQLTLLGFTDEFIEKTQQNLIDGCYPIEKEKQITTYLDKGKMQLSISAPQAWLKYKDANWTPPELWNHGIAGAFLDYNLYASHYAPHQGDNSQNISSYGQAGVNLGAWRLRTDYQYDQSFNNGKSQATNLDFPRIYLFRPIPAMNAKLTIGQYDTESSIFDSFHFSGISLKSDENMLPPDLRGYAPQITGVAQTNAKVTVSQNNRIIYQENVPPGPFAITNLFNTLQGQLDVKVEEEDGRVTQWQVASNSIPYLTRKGQIRYTTAMGKPTSVGGDSLQQPFFWTGEFSWGWLNNVSLYGGSVLTNRDYQSLAAGVGFNLNSLGSLSFDVTRSDAQLHNQDKETGYSYRANYSKRFESTGSQLTFAGYRFSDKNFVTMNEYINDTNHYTNYQNEKESYIVTFNQYLESLRLNTYVSLARNTYWDASSNVNYSLSLSRDFDIGPLKNVSTSLTFSRINWEEDNQDQLYLNISIPWGTSRTLSYGMQRNQDNEISHTASWYDSSDRNNSWSVSASGDNDEFKDMKASLRASYQHNTENGRLYLSGTSQRDSYYSLNASWNGSFTATRHGAAFHDYSGSADSRFMIDADGTEDIPLNNKRAVTNRYGIGVIPSVSSYITTSLSVDTRNLPENVDIENSVITTTLTEGAIGYAKLDTRKGYQIIGVIRLADGSHPPLGISVKDETSHKELGLVADGGFVYLNGIQDDNKLALRWGDKSCFIQPPNSSNLTTGTAILPCISQN" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 "G7586-MONOMER" "putative fimbrial chaperone YqiH" ["YqiH"] "MRYLNTKNIIAAGVLLSCMSSIAWGAIIPDRTRIIMNESDKGEALKLTNQSKNLPYLAQTWIEDTKGNKSRDFIVTVPPMVRLNPSEQIQIRMITQEKIAQLPKDRETLFYFNVREIPPKTDKKNVMQVTMQHALKLFWRPKAIELEDDGVMTYEKVEIIRRNDGSIRFNNKMPYHVTLGYIGTNGVTMLPQTQSLMVTPFSYANTQFKNVPSTFQVGYINDFGGLSFYEINCPVVNNICNISVANRDQ" [] ["CCO-PERI-BAC"] 0 [] {} 0 "G7587-MONOMER" "putative fimbrial protein YqiI" ["YqiI"] "MRYLLIVITFFMGFSSLPAWAMDCYAEHEGGNTVVIGYVPRISIPSDGKKGDKIWQSSEYFMNVFCNNALPGPSPGEEYPSAWANIMMLLASGQDFYNQNSYTFGVTYNGVDYDSTSPLPIAAPVCIDIKGAGTFGNGYKKPAVCSGGPEPQLSVTFPVRVQLYIKLAKNANKVNKKLVLPDEYIALEFKGMSGAGAIEVDKNLTFRIRGLNNIHVLDCFVNVDLEPADGVVDFGKINSRTIKNTSVSETFSVVMTKDPGAACTEQFNILGSFFTTDILSDYSHLDIGNGLLLKIFHNDGTATEFNRFSQFASFSSSSAPSVTAPFRAELSANPAETVVEGPFSKDVILKITYN" [] ["CCO-PILUS", "CCO-EXTRACELLULAR"] 0 [] {} 0 -"G7588-MONOMER" "DUF1449 domain-containing inner membrane protein YqiJ" ["YqiJ"] "MILFADYNTPYLFAISFVLLIGLLEIFALICGHMLSGALDAHLDHYDSITTGHISQALHYLNIGRLPALVVLCLLAGFFGLIGILLQHACIMVWQSPLSNLFVVPVSLLFTIIAVHYTGKIVAPWIPRDHSSAITEEEYIGSMALITGHQATSGNPCEGKLTDQFGQIHYLLLEPEEGKIFTKGDKVLIICRLSATRYLAENNPWPQIL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7588-MONOMER" "DUF1449 domain-containing inner membrane protein YqiJ" ["YqiJ"] "MILFADYNTPYLFAISFVLLIGLLEIFALICGHMLSGALDAHLDHYDSITTGHISQALHYLNIGRLPALVVLCLLAGFFGLIGILLQHACIMVWQSPLSNLFVVPVSLLFTIIAVHYTGKIVAPWIPRDHSSAITEEEYIGSMALITGHQATSGNPCEGKLTDQFGQIHYLLLEPEEGKIFTKGDKVLIICRLSATRYLAENNPWPQIL" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7589-MONOMER" "flotillin family inner membrane protein YqiK" ["YqiK"] "MDDIVNSVPSWMFTAIIAVCILFIIGIIFARLYRRASAEQAFVRTGLGGQKVVMSGGAIVMPIFHEIIPINMNTLKLEVSRSTIDSLITKDRMRVDVVVAFFVRVKPSVEGIATAAQTLGQRTLSPEDLRMLVEDKFVDALRATAAQMTMHELQDTRENFVQGVQNTVAEDLSKNGLELESVSLTNFNQTSKEHFNPNNAFDAEGLTKLTQETERRRRERNEVEQDVEVAVREKNRDALSRKLEIEQQEAFMTLEQEQQVKTRTAEQNARIAAFEAERRREAEQTRILAERQIQETEIDREQAVRSRKVEAEREVRIKEIEQQQVTEIANQTKSIAIAAKSEQQSQAEARANLALAEAVSAQQNVETTRQTAEADRAKQVALIAAAQDAETKAVELTVRAKAEKEAAEMQAAAIVELAEATRKKGLAEAEAQRALNDAINVLSDEQTSLKFKLALLQALPAVIEKSVEPMKSIDGIKIIQVDGLNRGGAAGDANTGNVGGGNLAEQALSAALSYRTQAPLIDSLLNEIGVSGGSLAALTSPLTSTTPVEEKAE" ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7590-MONOMER" "fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase" ["HldE", "YqiF", "RfaE", "GmhC", "WaaE"] "MKVTLPEFERAGVMVVGDVMLDRYWYGPTSRISPEAPVPVVKVNTIEERPGGAANVAMNIASLGANARLVGLTGIDDAARALSKSLADVNVKCDFVSVPTHPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLHERINQALSSIGALVLSDYAKGALASVQQMIQLARKAGVPVLIDPKGTDFERYRGATLLTPNLSEFEAVVGKCKTEEEIVERGMKLIADYELSALLVTRSEQGMSLLQPGKAPLHMPTQAQEVYDVTGAGDTVIGVLAATLAAGNSLEEACFFANAAAGVVVGKLGTSTVSPIELENAVRGRADTGFGVMTEEELKLAVAAARKRGEKVVMTNGVFDILHAGHVSYLANARKLGDRLIVAVNSDASTKRLKGDSRPVNPLEQRMIVLGALEAVDWVVSFEEDTPQRLIAGILPDLLVKGGDYKPEEIAGSKEVWANGGEVLVLNFEDGCSTTNIIKKIQQDKKG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"G7593-MONOMER" "NADPH-dependent ferric-chelate reductase" ["NfeF", "YqjH", "ferric reductase, NADPH-dependent", "Ni-responsive Fe-uptake flavoprotein"] "MNNTPRYPQRVRNDLRFRELTVLRVERISAGFQRIVLGGEALDGFTSRGFDDHSKLFFPQPDAHFVPPTVTEEGIVWPEGPRPPSRDYTPLYDELRHELAIDFFIHDGGVASGWAMQAQPGDKLTVAGPRGSLVVPEDYAYQLYVCDESGMPALRRRLETLSKLAVKPQVSALVSVRDNACQDYLAHLDGFNIEWLAHDEQAVDARLAQMQIPADDYFIWITGEGKVVKNLSRRFEAEQYDPQRVRAAAYWHAK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 +"G7593-MONOMER" "NADPH-dependent Fe(3+)-chelate reductase" ["NfeF", "YqjH", "ferric reductase, NADPH-dependent", "Ni-responsive Fe-uptake flavoprotein", "NADPH-dependent ferric-chelate reductase"] "MNNTPRYPQRVRNDLRFRELTVLRVERISAGFQRIVLGGEALDGFTSRGFDDHSKLFFPQPDAHFVPPTVTEEGIVWPEGPRPPSRDYTPLYDELRHELAIDFFIHDGGVASGWAMQAQPGDKLTVAGPRGSLVVPEDYAYQLYVCDESGMPALRRRLETLSKLAVKPQVSALVSVRDNACQDYLAHLDGFNIEWLAHDEQAVDARLAQMQIPADDYFIWITGEGKVVKNLSRRFEAEQYDPQRVRAAAYWHAK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G7594-MONOMER" "DNA-binding transcriptional repressor NfeR" ["NfeR", "YqjI"] "MSHHHEGCCKHEGQPRHEGCCKGEKSEHEHCGHGHQHEHGQCCGGRHGRGGGRRQRFFGHGELRLVILDILSRDDSHGYELIKAIENLTQGNYTPSPGVIYPTLDFLQEQSLITIREEEGGKKQIALTEQGAQWLEENREQVEMIEERIKARCVGAALRQNPQMKRALDNFKAVLDLRVNQSDISDAQIKKIIAVIDRAAFDITQLD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "G7595-MONOMER" "aerotaxis receptor" ["YqjJ", "Air", "Aer"] "MSSHPYVTQQNTPLADDTTLMSTTDLQSYITHANDTFVQVSGYTLQELQGQPHNMVRHPDMPKAAFADMWFTLKKGEPWSGIVKNRRKNGDHYWVRANAVPMVREGKISGYMSIRTRATDEEIAAVEPLYKALNAGRTSKRIHKGLVVRKGWLGKLPSLPLRWRARGVMTLMFILLAAMLWFVAAPVVTYILCALVVLLASACFEWQIVRPIENVAHQALKVATGERNSVEHLNRSDELGLTLRAVGQLGLMCRWLINDVSSQVSSVRNGSETLAKGTDELNEHTQQTVDNVQQTVATMNQMAASVKQNSATASAADKLSITASNAAVQGGEAMTTVIKTMDDIADSTQRIGTITSLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRHLASRSANAANDIRKLIDASADKVQSGSQQVHAAGRTMEDIVAQVKNVTQLIAQISHSTLEQADGLSSLTRAVDELNLITQKNAELVEESAQVSAMVKHRASRLEDAVTVLH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7596-MONOMER" "putrescine aminotransferase" ["PatA", "YgjG", "Oat", "Pat"] "MNRLPSSASALACSAHALNLIEKRTLDHEEMKALNREVIEYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALAAMRVSVEEA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -2992,14 +2992,14 @@ "G7605-MONOMER" "DUF218 domain-containing protein YgjQ" ["YgjQ"] "MLRAFARLLLRICFSRRTLKIACLLLLVAGATILIADRVMVNASKQLTWSDVNAVPARNVGLLLGARPGNRYFTRRIDTAAALYHAGKVKWLLVSGDNGRKNYDEASGMQQALIAKGVPAKVIFCDYAGFSTLDSVVRAKKVFGENHITIISQEFHNQRAIWLAKQYGIDAIGFNAPDLNMKHGFYTQLREKLARVSAVIDAKILHRQPKYLGPSVMIGPFSEHGCPAQK" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7606-MONOMER" "putative oxidoreductase YgjR" ["YgjR", "putative NAD(P)-binding dehydrogenase"] "MIRFAVIGTNWITRQFVEAAHESGKYKLTAVYSRSLEQAQHFANDFSVEHLFTSLEAMAESDAIDAVYIASPNSLHFSQTQLFLSHKINVICEKPLASNLAEVDAAIACARENQVVLFEAFKTACLPNFHLLRQALPKVGKLRKVFFNYCQYSSRYQRYLDGENPNTFNPAFSNGSIMDIGFYCLASAVALFGEPKSVQATASLLASGVDAQGVVVMDYGDFSVTLQHSKVSDSVLASEIQGEAGSLVIEKLSECQKVCFVPRGSQMQDLTQPQHINTMLYEAELFATLVDEHLVDHPGLAVSRITAKLLTEIRRQTGVIFPADSVKL" [] ["CCO-MEMBRANE"] 0 [] {} 0 "G7607-MONOMER" "putative membrane-bound redox modulator Alx" ["Alx", "YgjT"] "MNTVGTPLLWGGFAVVVAIMLAIDLLLQGRRGAHAMTMKQAAAWSLVWVTLSLLFNAAFWWYLVQTEGRAVADPQALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFVRKNGLLYATPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERFSMLKYGLAVILVFIGIKMLIVDFYHIPIAVSLGVVFGILVMTFIINAWVNYRHDKQRGG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7608-MONOMER" "inner membrane protein" ["YgjV"] "MTAYWLAQGVGVIAFLIGITTFFNRDERRFKKQLSVYSAVIGVHFFLLGTYPAGASAILNAIRTLITLRTRSLWVMAIFIVLTGGIGLAKFHHPVELLPVIGTIVSTWALFCCKGLTMRCVMWFSTCCWVIHNFWAGSIGGTMIEGSFLLMNGLNIIRFWRMQKRGIDPFKVEKTPSAVDERG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7609-MONOMER" "DedA family protein YqjA" ["EcfL", "YqjA"] "MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVLIAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPVFLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7610-MONOMER" "modulator protein MzrA" ["EcfM", "YqjB", "MzrA"] "MQIPRMSLRQLAWSGAVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHRFG" ["CCO-MEMBRANE"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7608-MONOMER" "inner membrane protein YgjV" ["YgjV"] "MTAYWLAQGVGVIAFLIGITTFFNRDERRFKKQLSVYSAVIGVHFFLLGTYPAGASAILNAIRTLITLRTRSLWVMAIFIVLTGGIGLAKFHHPVELLPVIGTIVSTWALFCCKGLTMRCVMWFSTCCWVIHNFWAGSIGGTMIEGSFLLMNGLNIIRFWRMQKRGIDPFKVEKTPSAVDERG" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7609-MONOMER" "DedA family protein YqjA" ["EcfL", "YqjA"] "MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVLIAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPVFLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7610-MONOMER" "modulator protein MzrA" ["EcfM", "YqjB", "MzrA"] "MQIPRMSLRQLAWSGAVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHRFG" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7611-MONOMER" "DUF1090 domain-containing protein YqjC" ["YqjC"] "MKYRIALAVSLFALSAGSYATTLCQEKEQNILKEISYAEKHQNQNRIDGLNKALSEVRANCSDSQLRADHQKKIAKQKDEVAERQQDLAEAKQKGDADKIAKRERKLAEAQEELKKLEARDY" [] [] 0 [] {} 0 -"G7612-MONOMER" "ribosome- and membrane-associated DUF883 domain-containing protein YqjD" ["YqjD", "ribosome modulation factor"] "MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAEQALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7613-MONOMER" "inner membrane protein YqjE" ["YqjE"] "MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEKANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIWTLRKSRKSTLLRHTRHELANDRQLLEEESREQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7612-MONOMER" "ribosome- and membrane-associated DUF883 domain-containing protein YqjD" ["YqjD", "ribosome modulation factor"] "MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAEQALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7613-MONOMER" "inner membrane protein YqjE" ["YqjE"] "MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEKANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIWTLRKSRKSTLLRHTRHELANDRQLLEEESREQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7614-MONOMER" "PF13997 family protein YqjK" ["YqjK"] "MSSKVERERRKAQLLSQIQQQRLDLSASRREWLETTGAYDRRWNMLLSLRSWALVGSSVMAIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG" ["CCO-CYTOSOL"] [] 0 [] {} 0 -"G7615-MONOMER" "DoxX family protein" ["YqjF"] "MKKLEDVGVLVARILMPILFITAGWGKITGYAGTQQYMEAMGVPGFMLPLVILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSNFAEGVNSLMFMKNLTISGGFLLLAITGPGAYSIDRLLNKKW" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7615-MONOMER" "DoxX family protein" ["YqjF"] "MKKLEDVGVLVARILMPILFITAGWGKITGYAGTQQYMEAMGVPGFMLPLVILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSNFAEGVNSLMFMKNLTISGGFLLLAITGPGAYSIDRLLNKKW" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7616-MONOMER" "glutathionyl-hydroquinone reductase YqjG" ["YqjG", "S-glutathionyl-(chloro)hydroquinone reductase"] "MGQLIDGVWHDTWYDTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYVSLACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSFPGATGDTLYQNEFLYQLYLHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAFDALGAKAGDYYPPALQTKIDELNGWIYDTVNNGVYKAGFATSQEAYDEAVAKVFESLARLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRDIYQMPGIAETVNFDHIRNHYFRSHKTINPTGIISIGPWQDLDEPHGRDVRFG" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7617-MONOMER" "putative inner membrane protein" ["YhaH"] "MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKMLGWQRAGGEGILTTIYGILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFNCQAGTPGENRFGPDPKLEP" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7618-MONOMER" "putative inner membrane protein" ["YhaI"] "MQWYLSVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQLILGLELPYLSMLYLLATFLPVLALAIRRLHDTDRSGAWALLFFVPFIGWLVLLVFFCTEGTSGSNRYGNDPKFGSN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -3010,9 +3010,9 @@ "G7626-MONOMER" "putative enamine/imine deaminase" ["YhaR", "TdcF"] "MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIAVRSA" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7629-MONOMER" "ribosome-dependent mRNA interferase toxin YhaV" ["YhaV", "ribonuclease toxin YhaV"] "MDFPQRVNGWALYAHPCFQETYDALVAEVETLKGKDPENYQRKAATKLLAVVHKVIEEHITVNPSSPAFRHGKSLGSGKNKDWSRVKFGAGRYRLFFRYSEKEKVIILGWMNDENTLRTYGKKTDAYTVFSKMLKRGHPPADWETLTRETEETH" [] [] 0 [] {} 1 "G7630-MONOMER" "DNA-binding transcriptional repressor AgaR" ["YhaW", "AgaR"] "MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEPSVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLEGLRKAGVEVILVGE" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7631-MONOMER" "putative tagatose-1,6-bisphosphate aldolase 1 chaperone" ["YhaX", "KbaZ", "AgaZ"] "MKHLTEMVRQHKAGKTNGIYAVCSAHPLVLEAAIRYASANQTPLLIEATSNQVDQFGGYTGMTPADFRGFVCQLADSLNFPQDALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGFKKIHLDCSMSCQDDPIPLTDDIVAERAARLAKVAEETCLEHFGEADLEYVIGTEVPVPGGAHETLSELAVTTPDAARATLEAHRHAFEKQGLNAIWPRIIALVVQPGVEFDHTNVIDYQPAKASALSQMVENYETLIFEAHSTDYQTPQSLRQLVIDHFAILKVGPALTFALREALFSLAAIEEELVPAKACSGLRQVLEDVMLDRPEYWQSHYHGDGNARRLARGYSYSDRVRYYWPDSQIDDAFAHLVRNLADSPIPLPLISQYLPLQYVKVRSGELQPTPRELIINHIQDILAQYHTACEGQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7632-MONOMER" "N-acetyl-D-galactosamine specific PTS enzyme IIB component" ["YhaY", "AgaV", "EIIBAga", "EIIBGalNAc", "Enzyme IIBAga", "Enzyme IIBGalNAc"] "MPNIVLSRIDERLIHGQVGVQWVGFAGANLVLVANDEVAEDPVQQNLMEMVLAEGIAVRFWTLQKVIDNIHRAADRQKILLVCKTPADFLTLVKGGVPVNRINVGNMHYANGKQQIAKTVSVDAGDIAAFNDLKTAGVECFVQGVPTEPAVDLFKLL" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G7633-MONOMER" "N-acetyl-D-galactosamine specific PTS truncated enzyme IIC component" ["YhaZ", "AgaW", "EIIC'Aga", "EIIC'GalNAc", "Enzyme IIC'Aga", "Enzyme IIC'GalNAc"] "MEISLLQAFALGIIAFIAGLDMFNGLTHMHRPVVLGPLVGLVLGDLHTGILTGGTLELVWMGLAPLAGAQPPNVIIGTIVGTAFAITTGVKPDVAVGVAVPFAVAVQMGITFLFSVMSGVMSRCDLATNPRRI" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 +"G7631-MONOMER" "putative tagatose-1,6-bisphosphate aldolase 1 chaperone" ["YhaX", "KbaZ", "AgaZ"] "MKHLTEMVRQHKAGKTNGIYAVCSAHPLVLEAAIRYASANQTPLLIEATSNQVDQFGGYTGMTPADFRGFVCQLADSLNFPQDALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGFKKIHLDCSMSCQDDPIPLTDDIVAERAARLAKVAEETCLEHFGEADLEYVIGTEVPVPGGAHETLSELAVTTPDAARATLEAHRHAFEKQGLNAIWPRIIALVVQPGVEFDHTNVIDYQPAKASALSQMVENYETLIFEAHSTDYQTPQSLRQLVIDHFAILKVGPALTFALREALFSLAAIEEELVPAKACSGLRQVLEDVMLDRPEYWQSHYHGDGNARRLARGYSYSDRVRYYWPDSQIDDAFAHLVRNLADSPIPLPLISQYLPLQYVKVRSGELQPTPRELIINHIQDILAQYHTACEGQ" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 +"G7632-MONOMER" "N-acetyl-D-galactosamine specific PTS enzyme IIB component" ["YhaY", "AgaV", "EIIBAga", "EIIBGalNAc", "Enzyme IIBAga", "Enzyme IIBGalNAc"] "MPNIVLSRIDERLIHGQVGVQWVGFAGANLVLVANDEVAEDPVQQNLMEMVLAEGIAVRFWTLQKVIDNIHRAADRQKILLVCKTPADFLTLVKGGVPVNRINVGNMHYANGKQQIAKTVSVDAGDIAAFNDLKTAGVECFVQGVPTEPAVDLFKLL" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"G7633-MONOMER" "N-acetyl-D-galactosamine specific PTS truncated enzyme IIC component" ["YhaZ", "AgaW", "EIIC'Aga", "EIIC'GalNAc", "Enzyme IIC'Aga", "Enzyme IIC'GalNAc"] "MEISLLQAFALGIIAFIAGLDMFNGLTHMHRPVVLGPLVGLVLGDLHTGILTGGTLELVWMGLAPLAGAQPPNVIIGTIVGTAFAITTGVKPDVAVGVAVPFAVAVQMGITFLFSVMSGVMSRCDLATNPRRI" [] [] 0 [] {} 0 "G7634-MONOMER" "putative galactosamine-6-phosphate deaminase/isomerase" ["YraB", "AgaS"] "MPENYTPAAAATGTWTEEEIRHQPRAWIRSLTNIDALRSALNNFLEPLLRKENLRIILTGAGTSAFIGDIIAPWLASHTGKNFSAVPTTDLVTNPMDYLNPAHPLLLISFGRSGNSPESVAAVELANQFVPECYHLPITCNEAGALYQNAINSDNAFALLMPAETHDRGFAMTSSITTMMASCLAVFAPETINSQTFRDVADRCQAILTSLGDFSEGVFGYAPWKRIVYLGSGGLQGAARESALKVLELTAGKLAAFYDSPTGFRHGPKSLVDDETLVVVFVSSHPYTRQYDLDLLAELRRDNQAMRVIAIAAESSDIVAAGPHIILPPSRHFIDVEQAFCFLMYAQTFALMQSLHMGNTPDTPSASGTVNRVVQGVIIHPWQA" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "G7636-MONOMER" "putative deaminase AgaI" ["YraG", "AgaI"] "MERGTASGGASLLKEFHPVQTLQQVENYTALSERASEYLLAVIRSKPNAVICLATGATPLLTYHYLVEKIHQQQVDVSQLTFVKLDEWVDLPLTMPGTCETFLQQHIVQPLGLREDQLISFRSEEINETECERVTNLIARKGGLDLCVLGLGKNGHLGLNEPGESLQPACHISQLDARTQQHEMLKTAGRPVTRGITLGLKDILNAREVLLLVTGEGKQDATDRFLTAKVSTAIPASFLWLHSNFICLINT" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7637-MONOMER" "putative fimbrial protein YraH" ["YraH"] "MNKVTKTAIAGLLALFAGNAAATDGEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFRNIGERSPKIPFTIPLVNCPMTGWEHDNGNVEASFRLWLETRDNGTVPNFPNLAKVGSFAGIAATGVGIRIDDAESGNIMPLNAMGNDNTVYQIPAESNGIVNVDLIAYYVSTVVPSEITPGEADAIVNVTLDYR" [] ["CCO-EXTRACELLULAR", "CCO-PILUS"] 0 [] {} 0 @@ -3020,10 +3020,10 @@ "G7639-MONOMER" "putative fimbrial usher protein YraJ" ["YraJ"] "MPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYYFDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQQLNLSIPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQTSSWNTISSYLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVSAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYFSFNEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVSGQQWGVGYSLNYQYSRYTDQNNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDDTGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 "G7640-MONOMER" "putative fimbrial adhesin YraK" ["YraK"] "MKRAPLITGLLLISTSCAYASSGGCGADSTSGATNYSSVVDDVTVNQTDNVTGREFTSATLSSTNWQYACSCSAGKAVKLVYMVSPVLTTTGHQTGYYKLNDSLDIKTTLQANDIPGLTTDQVVSVNTRFTQIKNNTVYSAATQTGVCQGDTSRYGPVNIGANTTFTLYVTKPFLGSMTIPKTDIAVIKGAWVDGMGSPSTGDFHDLVKLSIQGNLTAPQSCKINQGDVIKVNFGFINGQKFTTRNAMPDGFTPVDFDITYDCGDTSKIKNSLQMRIDGTTGVVDQYNLVARRRSSDNVPDVGIRIENLGGGVANIPFQNGILPVDPSGHGTVNMRAWPVNLVGGELETGKFQGTATITVIVR" [] ["CCO-EXTRACELLULAR", "CCO-PILUS"] 0 [] {} 0 "G7641-MONOMER" "16S rRNA 2'-O-ribose C1402 methyltransferase" ["RsmI", "YraL", "ribosomal RNA small subunit methyltransferase I"] "MKQHQSADNSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFGINARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIEAEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQEEDLPADALRTLALLQAELPLKKAAALAAEIHGVKKNALYKYALEQQG" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G7642-MONOMER" "outer membrane lipoprotein - activator of MrcA activity" ["LpoA", "YraM"] "MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDAQRREKTLLAVEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIAQEPLLGAKEKQQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKMLPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAADVAEQPQPQTVDGVASPAQASVSDLTGEQPAAQPVPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNTPLNVLALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPRSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTSELRAGVNGGSGIALTGSPITLRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSGATLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEINGNTGSLTANPDCVINRNLSWLQYQQGQVVPVS" ["CCO-OUTER-MEM"] ["CCO-PERI-BAC", "CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"G7642-MONOMER" "outer membrane lipoprotein - activator of MrcA activity" ["LpoA", "YraM"] "MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDAQRREKTLLAVEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIAQEPLLGAKEKQQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKMLPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAADVAEQPQPQTVDGVASPAQASVSDLTGEQPAAQPVPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNTPLNVLALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPRSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTSELRAGVNGGSGIALTGSPITLRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSGATLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEINGNTGSLTANPDCVINRNLSWLQYQQGQVVPVS" ["CCO-OUTER-MEM"] ["CCO-PERI-BAC", "CCO-OUTER-MEM"] 0 [] {} 0 "G7643-MONOMER" "PF02021 family protein YraN" ["YraN"] "MATVPTRSGSPRQLTTKQTGDAWEAQARRWLEGKGLRFIAANVNERGGEIDLIMREGRTTIFVEVRYRRSALYGGAAASVTRSKQHKLLQTARLWLARHNGSFDTVDCRFDVVAFTGNEVEWIKDAFNDHS" [] [] 0 [] {} 0 -"G7644-MONOMER" "division and outer membrane stress-associated lipid-binding lipoprotein" ["DolP", "EcfH", "YraP"] "MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSKDEQIKKEARINVTAYQGKVLLVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMGLVTEREAKAAADIASRVSGVKRVTTAFTFIK" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-OUTER-MEM"] 0 [] {} 0 -"G7645-MONOMER" "permease family protein YraQ" ["YraQ"] "MTGQSSSQAATPIQWWKPALFFLVVIAGLWYVKWEPYYGKAFTAAETHSIGKSILAQADANPWQAALDYAMIYFLAVWKAAVLGVILGSLIQVLIPRDWLLRTLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAAGMRRQQVSMGGALAFWMGNPVLNPATLVFMGFVLGWGFAAIRLVAGLVMVLLIATLVQKWVRETPQTQAPVEIDIPEAQGGFFSRWGRALWTLFWSTIPVYILAVLVLGAARVWLFPHADGAVDNSLMWVVAMAVAGCLFVIPTAAEIPIVQTMMLAGMGTAPALALLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAVSGVIVGGLALLF" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7644-MONOMER" "division and outer membrane stress-associated lipid-binding lipoprotein" ["DolP", "EcfH", "YraP"] "MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSKDEQIKKEARINVTAYQGKVLLVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMGLVTEREAKAAADIASRVSGVKRVTTAFTFIK" ["CCO-OUTER-MEM"] ["CCO-PERI-BAC", "CCO-OUTER-MEM"] 0 [] {} 0 +"G7645-MONOMER" "permease family protein YraQ" ["YraQ"] "MTGQSSSQAATPIQWWKPALFFLVVIAGLWYVKWEPYYGKAFTAAETHSIGKSILAQADANPWQAALDYAMIYFLAVWKAAVLGVILGSLIQVLIPRDWLLRTLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAAGMRRQQVSMGGALAFWMGNPVLNPATLVFMGFVLGWGFAAIRLVAGLVMVLLIATLVQKWVRETPQTQAPVEIDIPEAQGGFFSRWGRALWTLFWSTIPVYILAVLVLGAARVWLFPHADGAVDNSLMWVVAMAVAGCLFVIPTAAEIPIVQTMMLAGMGTAPALALLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAVSGVIVGGLALLF" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7646-MONOMER" "putative nucleoside-diphosphate-sugar epimerase" ["YraR"] "MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLSDALAQVTDPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNETLFAPLFRLLPGNWKSIDARDVARVMLAESMRPEHEGVTILSSSELRKRAE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7647-MONOMER" "protein/nucleic acid deglycase 2" ["YhbO", "Maillard deglycase 2"] "MSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "G7648-MONOMER" "putative FMN binding protein YhbP" ["YhbP"] "METLIAISRWLAKQHVVTWCVQQEGELWCANAFYLFDAQKVAFYILTEEKTRHAQMSGPQAAVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDLARKAYNRRFPVARMLSAPVWEIRLDEIKFTDNTLGFGKKMIWLRDSGTEQA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -3033,14 +3033,14 @@ "G7652-MONOMER" "ubiquinone biosynthesis protein UbiU" ["UbiU", "YhbU", "putative peptidase (collagenase-like)", "putative peptidase YhbU"] "MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAINFYHRHFDVARVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMSEGRCYLSSYLTGESPNTIGACSPARFVRWQQTPQGLESRLNEVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKADPQNFVPQSAWMETLGSMSEGTQTTLGAYHRKWQ" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 1 "G7653-MONOMER" "ubiquinone biosynthesis protein UbiV" ["UbiV", "YhbV", "putative peptidase YhbV"] "MKYSLGPVLWYWPKETLEEFYQQAATSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAGSGKQIVLSTLALVQASSELGELKRYVENGEFLIEASDLGVVNMCAERKLPFVAGHALNCYNAVTLKILLKQGMMRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRNVLSQENQQVFVLNGIQTMSGYVYNLGNELASMQGLVDVVRLSPQGTDTFAMLDAFRANENGAAPLPLTANSDCNGYWRRLAGLELQA" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 1 "G7654-MONOMER" "putative luciferase-like monooxygenase YhbW" ["YhbW"] "MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGVQQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELLG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7655-MONOMER" "putative hydrolase YhbX" ["YhbX", "putative hydrolase, inner membrane"] "MTVFNKFARTFKSHWLLYLCVIVFGITNLVASSGAHMVQRLLFFVLTILVVKRISSLPLRLLVAAPFVLLTAADMSISLYSWCTFGTTFNDGFAISVLQSDPDEVVKMLGMYIPYLCAFAFLSLLFLAVIIKYDVSLPTKKVTGILLLIVISGSLFSACQFAYKDAKNKKAFSPYILASRFATYTPFFNLNYFALAAKEHQRLLSIANTVPYFQLSVRDTGIDTYVLIVGESVRVDNMSLYGYTRSTTPQVEAQRKQIKLFNQAISGAPYTALSVPLSLTADSVLSHDIHNYPDNIINMANQAGFQTFWLSSQSAFRQNGTAVTSIAMRAMETVYVRGFDELLLPHLSQALQQNTQQKKLIVLHLNGSHEPACSAYPQSSAVFQPQDDQDACYDNSIHYTDSLLGQVFELLKDRRASVMYFADHGLERDPTKKNVYFHGGREASQQAYHVPMFIWYSPVLGDGVDRTTENNIFSTAYNNYLINAWMGVTKPEQPQTLEEVIAHYKGDSRVVDANHDVFDYVMLRKEFTEDKQGNPTPEGQG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7655-MONOMER" "putative hydrolase YhbX" ["YhbX", "putative hydrolase, inner membrane"] "MTVFNKFARTFKSHWLLYLCVIVFGITNLVASSGAHMVQRLLFFVLTILVVKRISSLPLRLLVAAPFVLLTAADMSISLYSWCTFGTTFNDGFAISVLQSDPDEVVKMLGMYIPYLCAFAFLSLLFLAVIIKYDVSLPTKKVTGILLLIVISGSLFSACQFAYKDAKNKKAFSPYILASRFATYTPFFNLNYFALAAKEHQRLLSIANTVPYFQLSVRDTGIDTYVLIVGESVRVDNMSLYGYTRSTTPQVEAQRKQIKLFNQAISGAPYTALSVPLSLTADSVLSHDIHNYPDNIINMANQAGFQTFWLSSQSAFRQNGTAVTSIAMRAMETVYVRGFDELLLPHLSQALQQNTQQKKLIVLHLNGSHEPACSAYPQSSAVFQPQDDQDACYDNSIHYTDSLLGQVFELLKDRRASVMYFADHGLERDPTKKNVYFHGGREASQQAYHVPMFIWYSPVLGDGVDRTTENNIFSTAYNNYLINAWMGVTKPEQPQTLEEVIAHYKGDSRVVDANHDVFDYVMLRKEFTEDKQGNPTPEGQG" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7656-MONOMER" "GTPase ObgE" ["YhbZ", "CgtA", "ObgE", "Obg", "GTPase involved in chromosome partitioning and ribosome assembly"] "MKFVDEASILVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGDVWMEADENLNTLIDYRFEKSFRAERGQNGASRDCTGKRGKDVTIKVPVGTRVIDQGTGETMGDMTKHGQRLLVAKGGWHGLGNTRFKSSVNRTPRQKTNGTPGDKRELLLELMLLADVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNEKSFVVADIPGLIEGAAEGAGLGIRFLKHLERCRVLLHLIDIDPIDGTDPVENARIIISELEKYSQDLATKPRWLVFNKIDLLDKVEAEEKAKAIAEALGWEDKYYLISAASGLGVKDLCWDVMTFIIENPVVQAEEAKQPEKVEFMWDDYHRQQLEEIAEEDDEDWDDDWDEDDEEGVEFIYKR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "G7657-MONOMER" "acid stress protein IbaG" ["IbaG", "YrbA", "putative DNA-binding transcriptional regulator IbaG"] "MENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGF" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "G7658-MONOMER" "intermembrane phospholipid transport system protein MlaB" ["YrbB", "MlaB"] "MSESLSWMQTGDTLALSGELDQDVLLPLWEMREEAVKGITCIDLSRVSRVDTGGLALLLHLIDLAKKQGNNVTLQGVNDKVYTLAKLYNLPADVLPR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "G7659-MONOMER" "intermembrane phospholipid transport system - periplasmic binding protein" ["YrbC", "MlaC"] "MFKRLMMVALLVIAPLSAATAADQTNPYKLMDEAAQKTFDRLKNEQPQIRANPDYLRTIVDQELLPYVQVKYAGALVLGQYYKSATPAQREAYFAAFREYLKQAYGQALAMYHGQTYQIAPEQPLGDKTIVPIRVTIIDPNGRPPVRLDFQWRKNSQTGNWQAYDMIAEGVSMITTKQNEWGTLLRTKGIDGLTAQLKSISQQKITLEEKK" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 "G7662-MONOMER" "D-arabinose 5-phosphate isomerase KdsD" ["KdsD", "YrbH"] "MSHVELQPGFDFQQAGKEVLAIERECLAELDQYINQNFTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDGDLRRVFDMGVDVRQLSIADVMTPGGIRVRPGILAVEALNLMQSRHITSVMVADGDHLLGVLHMHDLLRAGVV" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 "G7663-MONOMER" "3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC" ["YrbJ", "KdsC", "YrbI"] "MSKAGASLATCYGPVSADVIAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MG+2": 1} 1 -"G7664-MONOMER" "lipopolysaccharide transport system protein LptC" ["YrbK"] "MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRTSYEIQNKQTQP" ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"G7664-MONOMER" "lipopolysaccharide transport system protein LptC" ["YrbK"] "MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRTSYEIQNKQTQP" ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-PM-BAC-NEG"] ["CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 1 "G7667-MONOMER" "protein kinase-like domain-containing protein YrbL" ["YrbL"] "MIRLSEQSPLGTGRHRKCYAHPEDAQRCIKIVYHRGDGGDKEIRRELKYYAHLGRRLKDWSGIPRYHGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQCRYEEDIAQLRQLLKQLKRYLQDNRIVTMSLKPQNILCHRISESEVIPVVCDNIGESTLIPLATWSKWCCLRKQERLWKRFIAQPALAIALQKDLQPRESKTLALTSREA" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL"] 0 [] {} 0 "G7668-MONOMER" "peptidoglycan glycosyltransferase MtgA" ["Mgt", "YrbM", "MtgA"] "MSKSRLTVFSFVRRFLLRLMVVLAVFWGGGIALFSVAPVPFSAVMVERQVSAWLHGNFRYVAHSDWVSMDQISPWMGLAVIAAEDQKFPEHWGFDVASIEKALAHNERNENRIRGASTISQQTAKNLFLWDGRSWVRKGLEAGLTLGIETVWSKKRILTVYLNIAEFGDGVFGVEAAAQRYFHKPASKLTRSEAALLAAVLPNPLRFKVSSPSGYVRSRQAWILRQMYQLGGEPFMQQHQLD" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CW-BAC-NEG", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7669-MONOMER" "radical SAM family oxidoreductase YhcC" ["YhcC"] "MQLQKLVNMFGGDLTRRYGQKVHKLTLHGGFSCPNRDGTIGRGGCTFCNVASFADEAQQHRSIAEQLAHQANLVNRAKRYLAYFQAYTSTFAEVQVLRSMYQQAVSQANIVGLCVGTRPDCVPDAVLDLLCEYKDQGYEVWLELGLQTAHDKTLHRINRGHDFACYQRTTQLARQRGLKVCSHLIVGLPGEGQAECLQTLERVVETGVDGIKLHPLHIVKGSIMAKAWEAGRLNGIELEDYTLTAGEMIRHTPPEVIYHRISASARRPTLLAPLWCENRWTGMVELDRYLNEHGVQGSALGRPWLPPTE" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 0 @@ -3049,52 +3049,52 @@ "G7673-MONOMER" "DUF1120 domain-containing protein YhcF" ["YhcF", "putative transcriptional regulator"] "MNNVKLLIAGSAFFAMSAQAADRVSIDVKVTLEAAACTPILSNGGVVNFGSHSVNRLSTQHYTQIGTRNINMTITCESATGIAITARDTRMDSMTTGKDSGGQSGVKYTLNGGGYISQTTRLFGLGKTKDNKNIGSYAVLIDSNNISASNGSQTLAVSIAGADAVITGQKRAWQTLTAYPLAVDQSYYYTFVKPGETTPTPVTNAIIPLQVSASIANDLGGSEKIELDGKAVISVVYL" [] ["CCO-MEMBRANE"] 0 [] {} 0 "G7674-MONOMER" "DUF1016 domain-containing protein YhcG" ["YhcG"] "MESLSEGTTAGYQQIHDGIIHLVDSARTETVRSVNALMTATYQEIGRRIVEFEQGGEARAAYGAQLIKRLSKDLCLRYKRGFSAKNLRQMRLFYLFFQHVEIHQTMSGELTPLGIPQTPSAEFPSAKIWQTLSAKSFPLPRSTYVRLLSVKNADARSFYEKETLRCGWSVRQLERQIATQFYERTLLSHDKSAMLQQHAPAETHILPQQAIRDPFVLEFLELKDEYSESDFEEALINHLMDFMLELGDDFAFVGRQRRLRIDDNWFRVDLLFFHRRLRCLLIVDLKVGKFSYSDAGQMNMYLNYAKEHWTLPDENPPIGLVLCAEKGAGEAHYALAGLPNTVLASEYKMQLPDEKRLADELVRTQAVLEEGYRRR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7675-MONOMER" "N-acetylneuraminate anomerase" ["NanQ", "YhcH", "DUF386 domain-containing protein YhcH"] "MMMGEVQSLPSAGLHPALQDALTLALAARPQEKAPGRYELQGDNIFMNVMTFNTQSPVEKKAELHEQYIDIQLLLNGEERILFGMAGTARQCEEFHHEDDYQLCSTIDNEQAIILKPGMFAVFMPGEPHKPGCVVGEPGEIKKVVVKVKADLMA" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7678-MONOMER" "NanR" ["YhcK"] "MGLMNAFDSQTEDSSPAIGRNLRSRPLARKKLSEMVEEELEQMIRRREFGEGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSADTIIGELSGMAKDFLSHPGGIAHFEQLRLFFESSLVRYAAEHATDEQIDLLAKALEINSQSLDNNAAFIRSDVDFHRVLAEIPGNPIFMAIHVALLDWLIAARPTVTDQALHEHNNVSYQQHIAIVDAIRRHDPDEADRALQSHLNSVSATWHAFGQTTNKKK" [] ["CCO-CYTOSOL"] 0 [] {} 1 +"G7678-MONOMER" "DNA-binding transcriptional dual regulator NanR" ["YhcK"] "MGLMNAFDSQTEDSSPAIGRNLRSRPLARKKLSEMVEEELEQMIRRREFGEGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSADTIIGELSGMAKDFLSHPGGIAHFEQLRLFFESSLVRYAAEHATDEQIDLLAKALEINSQSLDNNAAFIRSDVDFHRVLAEIPGNPIFMAIHVALLDWLIAARPTVTDQALHEHNNVSYQQHIAIVDAIRRHDPDEADRALQSHLNSVSATWHAFGQTTNKKK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7680-MONOMER" "cell division protein ZapE" ["ZapE", "YhcM", "cell division factor ZapE with ATPase activity"] "MQSVTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSTPPAPRTSGLMARVGKLWGKREDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLMKALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTLTQAHLWLSPLHDETRAQMDKLWLALAGGKRENSPTLEINHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVSAEVPLYEIYQGDRLKFEFQRCLSRLQEMQSEEYLKREHLAG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7681-MONOMER" "Z-ring associated protein G" ["LapD", "ZapG", "YhcB"] "MTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELDEYREELVSHFARSAELLDTMAHDYRQLYQHMAKSSSSLLPELSAEANPFRNRLAESEASNDQAPVQMPRDYSEGASGLLRTGAKRD" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7681-MONOMER" "inner membrane protein YhcB" ["LapD", "ZapG", "YhcB"] "MTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELDEYREELVSHFARSAELLDTMAHDYRQLYQHMAKSSSSLLPELSAEANPFRNRLAESEASNDQAPVQMPRDYSEGASGLLRTGAKRD" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7682-MONOMER" "periplasmic serine endoprotease" ["HhoA", "DegQ"] "MKKQTQLLSALALSVGLTLSASFQAVASIPGQVADQAPLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAKPAIIALQIVRGNESIYLLMR" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "G7683-MONOMER" "DUF1471 domain-containing stress-induced protein YhcN" ["YhcN"] "MKIKTTVAALSVLSVLSFGAFAADSIDAAQAQNREAIGTVSVSGVASSPMDMREMLNKKAEEKGATAYQITEARSGDTWHATAELYK" [] ["CCO-PERI-BAC", "CCO-CYTOSOL"] 0 [] {} 0 "G7684-MONOMER" "putative barnase inhibitor" ["YhcO"] "MNIYTFDFDEIESQEDFYRDFSQTFGLAKDKVRDLDSLWDVLMNDVLPLPLEIEFVHLGEKTRRRFGALILLFDEAEEELEGHLRFNVRH" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7685-MONOMER" "aromatic carboxylic acid efflux pump subunit AaeB" ["AaeB", "YhcP"] "MGIFSIANQHIRFAVKLATAIVLALFVGFHFQLETPRWAVLTAAIVAAGTAFAAGGEPYSGAIRYRGFLRIIGTFIGCIAGLVIIIAMIRAPLLMILVCCIWAGFCTWISSLVRIENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCSEIVIGIVCAIMADLLFSPRSIKQEVDRELESLLVAQYQLMQLCIKHGDGEVVDKAWGDLVRRTTALQGMRSNLNMESSRWARANRRLKAINTLSLTLITQSCETYLIQNTRPELITDTFREFFDTPVETAQDVHKQLKRLRRVIAWTGERETPVTIYSWVAAATRYQLLKRGVISNTKINATEEEILQGEPEVKVESAERHHAMVNFWRTTLSCILGTLFWLWTGWTSGSGAMVMIAVVTSLAMRLPNPRMVAIDFIYGTLAALPLGLLYFLVIIPNTQQSMLLLCISLAVLGFFLGIEVQKRRLGSMGALASTINIIVLDNPMTFHFSQFLDSALGQIVGCVLAFTVILLVRDKSRDRTGRVLLNQFVSAAVSAMTTNVARRKENHLPALYQQLFLLMNKFPGDLPKFRLALTMIIAHQRLRDAPIPVNEDLSAFHRQMRRTADHVISARSDDKRRRYFGQLLEELEIYQEKLRIWQAPPQVTEPVNRLAGMLHKYQHALTDS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"G7685-MONOMER" "aromatic carboxylic acid efflux pump subunit AaeB" ["AaeB", "YhcP"] "MGIFSIANQHIRFAVKLATAIVLALFVGFHFQLETPRWAVLTAAIVAAGTAFAAGGEPYSGAIRYRGFLRIIGTFIGCIAGLVIIIAMIRAPLLMILVCCIWAGFCTWISSLVRIENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCSEIVIGIVCAIMADLLFSPRSIKQEVDRELESLLVAQYQLMQLCIKHGDGEVVDKAWGDLVRRTTALQGMRSNLNMESSRWARANRRLKAINTLSLTLITQSCETYLIQNTRPELITDTFREFFDTPVETAQDVHKQLKRLRRVIAWTGERETPVTIYSWVAAATRYQLLKRGVISNTKINATEEEILQGEPEVKVESAERHHAMVNFWRTTLSCILGTLFWLWTGWTSGSGAMVMIAVVTSLAMRLPNPRMVAIDFIYGTLAALPLGLLYFLVIIPNTQQSMLLLCISLAVLGFFLGIEVQKRRLGSMGALASTINIIVLDNPMTFHFSQFLDSALGQIVGCVLAFTVILLVRDKSRDRTGRVLLNQFVSAAVSAMTTNVARRKENHLPALYQQLFLLMNKFPGDLPKFRLALTMIIAHQRLRDAPIPVNEDLSAFHRQMRRTADHVISARSDDKRRRYFGQLLEELEIYQEKLRIWQAPPQVTEPVNRLAGMLHKYQHALTDS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "G7686-MONOMER" "aromatic carboxylic acid efflux pump membrane fusion protein" ["AaeA", "YhcQ"] "MKTLIRKFSRTAITVVLVILAFIAIFNAWVYYTESPWTRDARFSADVVAIAPDVSGLITQVNVHDNQLVKKGQILFTIDQPRYQKALEEAQADVAYYQVLAQEKRQEAGRRNRLGVQAMSREEIDQANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQNSFYVLAYMEETKLEGVRPGYRAEITPLGSNKVLKGTVDSVAAGVTNASSTRDDKGMATIDSNLEWVRLAQRVPVRIRLDNQQENIWPAGTTATVVVTGKQDRDESQDSFFRKMAHRLREFG" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"G7687-MONOMER" "DUF1656 domain-containing protein AaeX" ["AaeX", "YhcR"] "MSLFPVIVVFGLSFPPIFFELLLSLAIFWLVRRVLVPTGIYDFVWHPALFNTALYCCLFYLISRLFV" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7687-MONOMER" "DUF1656 domain-containing protein AaeX" ["AaeX", "YhcR"] "MSLFPVIVVFGLSFPPIFFELLLSLAIFWLVRRVLVPTGIYDFVWHPALFNTALYCCLFYLISRLFV" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7688-MONOMER" "DNA-binding transcriptional activator AaeR" ["YhcS", "AaeR", "QseA", "quorum sensing transcriptional regulator of LYSR-type", "LysR-type transcriptional regulator AaeR"] "MERLKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADLSSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGIAYVPLMWVINEINRGELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINSLTDYFVEVGKLFQEMHGRGKEK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7689-MONOMER" "metalloprotease subunit TldD" ["YhdO", "TldD", "protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD"] "MSLNLVSEQLLAANGLKHQDLFAILGQLAERRLDYGDLYFQSSYHESWVLEDRIIKDGSYNIDQGVGVRAISGEKTGFAYADQISLLALEQSAQAARTIVRDSGDGKVQTLGAVEHSPLYTSVDPLQSMSREEKLDILRRVDKVAREADKRVQEVTASLSGVYELILVAATDGTLAADVRPLVRLSVSVLVEEDGKRERGASGGGGRFGYEFFLADLDGEVRADAWAKEAVRMALVNLSAVAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNRRGTSVFSGQVGELVASELCTVVDDGTMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQDKLNARLMGMTPTGNGRRESYAHLPMPRMTNTYMLPGKSTPQEIIESVEYGIYAPNFGGGQVDITSGKFVFSTSEAYLIENGKVTKPVKGATLIGSGIETMQQISMVGNDLKLDNGVGVCGKEGQSLPVGVGQPTLKVDNLTVGGTA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "G7690-MONOMER" "phospholipid transport factor YhdP" ["YhdQ", "YhdR", "YhdP"] "MRRLPGILLLTGAALVVIAALLVSGLRIALPHLDAWRPEILNKIESATGMPVEASQLSASWQNFGPTLEAHDIRAELKDGGEFSVKRVTLALDVWQSLLHMRWQFRDLTFWQLRFRTNTPITSGGSDDSLEASHISDLFLRQFDHFDLRDSEVSFLTPSGQRAELAIPQLTWLNDPRRHRAEGLVSLSSLTGQHGVMQVRMDLRDDEGLLSNGRVWLQADDIDLKPWLGKWMQDNIALETAQFSLEGWMTIDKGDVTGGDVWLKQGGASWLGEKQTHTLSVDNLTAHITRENPGWQFSIPDTRITMDGKPWPSGALTLAWIPEQDVGGKDNKRSDELRIRASNLELAGLEGIRPLAAKLSPALGDVWRSTQPSGKINTLALDIPLQAADKTRFQASWSDLAWKQWKLLPGAEHFSGTLSGSVENGLLTASMKQAKMPYETVFRAPLEIADGQATISWLNNNKGFQLDGRNIDVKAKAVHARGGFRYLQPANDEPWLGILAGISTDDGSQAWRYFPENLMGKDLVDYLSGAIQGGEADNATLVYGGNPQLFPYKHNEGQFEVLVPLRNAKFAFQPDWPALTNLDIELDFINDGLWMKTDGVNLGGVRASNLTAVIPDYSKEKLLIDADIKGPGKAVGPYFDETPLKDSLGATLQELQLDGDVNARLHLDIPLNGELVTAKGEVTLRNNSLFIKPLDSTLKNLSGKFSFINSDLQSEPLTASWFNQPLNVDFSTKEGAKAYQVAVNLNGNWQPAKTGVLPEAVNEALSGSVAWDGKVGIDLPYHAGATYNIELNGDLKNVSSHLPSPLAKPAGEPLAVNVKVDGNLNSFELTGQAGADNHFNSRWLLGQKLTLDRAIWAADSKTLPPLPEQSGVELNMPPMNGAEWLALFQKGAAESVGGAASFPQHITLRTPMLSLGNQQWNNLSIVSQPTANGTLVEAQGREINATLAMRNNAPWLANIKYLYYNPSVAKTRGDSTPSSPFPTTERINFRGWPDAQIRCTECWFWGQKFGRIDSDITISGDTLTLTNGLIDTGFSRLTADGEWVNNPGNERTSLKGKLRGQKIDAAAEFFGVTTPIRQSSFNVDYDLHWRKAPWQPDEATLNGIIHTQLGKGEITEINTGHAGQLLRLLSVDALMRKLRFDFRDTFGEGFYFDSIRSTAWIKDGVMHTDDTLVDGLEADIAMKGSVNLVRRDLNMEAVVAPEISATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSILRYHISGPLDDPQINEVLRQPRKEKAQ" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7693-MONOMER" "DUF997 domain-containing protein YhdT" ["YhdT"] "MDTRFVQAHKEARWALGLTLLYLAVWLVAAYLSGVAPGFTGFPRWFEMACILTPLLFIGLCWAMVKFIYRDIPLEDDDAA" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7694-MONOMER" "DUF2556 domain-containing protein YhdU" ["YhdU"] "MIRKYWWLVVFAVFVFLFDTLLMQWIELLATETDKCRNMNSVNPLKLVNCDELNFQDRM" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 -"G7695-MONOMER" "lipoprotein YhdV" ["YhdV"] "MKRLIPVALLTALLAGCAHDSPCVPVYDDQGRLVHTNTCMKGTTQDNWETAGAIAGGAAAVAGLTMGIIALSK" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"G7693-MONOMER" "DUF997 domain-containing protein YhdT" ["YhdT"] "MDTRFVQAHKEARWALGLTLLYLAVWLVAAYLSGVAPGFTGFPRWFEMACILTPLLFIGLCWAMVKFIYRDIPLEDDDAA" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7694-MONOMER" "DUF2556 domain-containing protein YhdU" ["YhdU"] "MIRKYWWLVVFAVFVFLFDTLLMQWIELLATETDKCRNMNSVNPLKLVNCDELNFQDRM" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7695-MONOMER" "lipoprotein YhdV" ["YhdV"] "MKRLIPVALLTALLAGCAHDSPCVPVYDDQGRLVHTNTCMKGTTQDNWETAGAIAGGAAAVAGLTMGIIALSK" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7696-MONOMER" "hexapeptide repeats-containing protein YrdA" ["YrdA"] "MSDVLRPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLDQGNQTQP" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "G7697-MONOMER" "DUF1488 domain-containing protein YrdB" ["YrdB"] "MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRFTGDTPEQWLASFRQHRWDLEEEAENLIQEQSEDDQGWVWLP" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7698-MONOMER" "L-threonylcarbamoyladenylate synthase" ["TsaC", "YrdC", "RimN", "threonylcarbamoyl-AMP synthase"] "MNNNLQRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVRAQFGAAFPVVPGETGGRLNPSEIRDALTGELFRQG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G7699-MONOMER" "putative DNA topoisomerase" ["YrdD"] "MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7701-MONOMER" "type II secretion system protein GspA" ["YheD", "GspA"] "MSTRREVILSWLCEKRQTWRLCYLLGEAGSGKTWLAQQLQKDKHRRVITLSLVVSWQGKAAWIVTDDNAAEQGCRDSAWTRDEMAGQLLHALHRTDSRCPLIIIENAHLNHRRILDDLQRAISLIPDGQFLLIGRPDRKVERDFKKQGIELVSIGRLTEHELKASILEGQNIDQPDLLLTARVLKRIALLCRGDRRKLALAGETIRLLQQAEQTSVFTAKQWRMIYRILGDNRPRKMQLAVVMSGTIIALTCGWLLLSSFTATLPVPAWLIPVTPVVKQDMTKDIAHVVMRDSEALSVLYGVWGYEVPADSAWCDQAVRAGLACKSGNASLQTLVDQNLPWIASLKVGDKKLPVVVVRVGEASVDVLVGQQTWTLTHKWFESVWTGDYLLLWKMSPEGESTITRDSSEEEILWLETMLNRALHISTEPSAEWRPLLVEKIKQFQKSHHLKTDGVVGFSTLVHLWQVAGESAYLYRDEANISPETTVKGK" ["CCO-CYTOSOL"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 -"G7702-MONOMER" "type II secretion system protein GspC" ["YheE", "GspC"] "MPTLRFPFHLANHNKDAAINILIIFISIGSIIFNVNYFHTTIVKNGQIINQPTNAFQSDFSLAALWRNENHAGVKDANPVAVNQETPKLSIALNGIVLTSNDETSFVLINEGSEQKRYSLNEALESAPGTFIRKINKTSVVFETHGHYEKVTLHPGLPDIIKQPDSESQNVLADYIIATPIRDGEQIYGLRLNPRKGLNAFTTSLLQPGDIALRINNLSLTHPDEVSQALSLLLTQQSAQFTIRRNGVPRLINVSVGELTGMNGLRHERTQ" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"G7703-MONOMER" "type II secretion system secretin GspDα" ["GspD", "YheF", "GspDα"] "MKGLNKITCCLLAALLMPCAGHAENEQYGANFNNADIRQFVEIVGQHLGKTILIDPSVQGTISVRSNDTFSQQEYYQFFLSILDLYGYSVITLDNGFLKVVRSANVKTSPGMIADSSRPGVGDELVTRIVPLENVPARDLAPLLRQMMDAGSVGNVVHYEPSNVLILTGRASTINKLIEVIKRVDVIGTEKQQIIHLEYASAEDLAEILNQLISESHGKSQMPALLSAKIVADKRTNSLIISGPEKARQRITSLLKSLDVEESEEGNTRVYYLKYAKATNLVEVLTGVSEKLKDEKGNARKPSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIRRAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKSKALVGSEDLPVLDENTFNSHAPAPSSR" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 -"G7704-MONOMER" "type II secretion system ATPase GspE" ["YheG", "GspE"] "MRIHSPYPASWALAQRIGYLYSEGEIIYLADTPFERLLDIQRQVGQCQTMTSLSQADFEARLEAVFHQNTGESQQIAQDIDQSVDLLSLSEEMPANEDLLNEDSAAPVIRLINAILSEAIKETASDIHIETYEKTMSIRFRIDGVLRTILQPNKKLAALLISRIKVMARLDIAEKRIPQDGRISLRIGRRNIDVRVSTLPSIYGERAVLRLLDKNSLQLSLNNLGMTAADKQDLENLIQLPHGIILVTGPTGSGKSTTLYAILSALNTPGRNILTVEDPVEYELEGIGQTQVNTRVDMSFARGLRAILRQDPDVVMVGEIRDTETAQIAVQASLTGHLVLSTLHTNSASGAVTRLRDMGVESFLLSSSLAGIIAQRLVRRLCPQCRQFTPVSPQQAQMFKYHQLAVTTIGTPVGCPHCHQSGYQGRMAIHEMMVVTPELRAAIHENVDEQALERLVRQQHKALIKNGLQKVISGDTSWDEVMRVASATLESEA" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 -"G7705-MONOMER" "type II secretion system protein GspF" ["HopF", "GspF", "HofF"] "MNYRYRAMTQDGQKLQGIIDANDERQARLRLREEGLFLLDIRPQKSSGVKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEGHPLSDALQHFPTLFDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQSLIYPCMLTTVAIGVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPTLLATVFIVAVGFWLWLKRGNNRHRFHAMLLRVALIGPLICAINSARYLRTLSILQSSGVPLLDGMNLSTESLNNLEIRQRLANAAENVRQGNSIHLSLEQTAIFPPMMLYMVASGEKSGQLGTLMVRAADNQETLQQNRIALTLSIFEPALIITMALIVLFIVVSVLQPLLQLNSMIN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"CA+2": 1} 1 -"G7706-MONOMER" "type II secretion system major pseudopilin GspG" ["HopG", "GspG", "HofG"] "MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLLSAGPDGEMGTEDDITNWGLSKKKK" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"G7707-MONOMER" "type II secretion system minor pseudopilin GspH" ["HopH", "GspH", "HofH"] "MNQQRGFTLLEMMLVLALVAITASVVLFTYGREDVASTRARETAARFTAALELAIDRATLSGQPVGIHFSDSAWRIMVPGKTPSAWRWVPLQEDAADESQNDWDEELSIHLQPFKPDDSNQPQVVILADGQITPFSLLMANAGTGEPLLTLVCSGSWPLDQTLARDTRP" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"G7708-MONOMER" "type II secretion system minor pseudopilin GspI" ["YheH", "GspI"] "MNKQSGMTLLEVLLAMSIFTAVALTLMSSMQGQRNAIERMRNETLALWIADNQLQSQDSFGEENTSSSGKELINGEEWNWRSDIHSSKDGTLLERTITVTLPSGQTTSLTRYQSIDNKSGQAQDD" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"G7709-MONOMER" "type II secretion system minor pseudopilin GspJ" ["YheI", "GspJ"] "MINRQQGFTLLEVMAALAIFSMLSVLAFMIFSQASELHQRSQKEIQQFNQLQRTITILDNDLLQLVARRNRSTDKIMVLGEEAIFTTQSRDPLAPLSEAQTLLTVHWYLRNHTLYRAVRTSVDGRKDQPAQAMLEHVESFLLESNSGESQELPLSVTLHLQTQQYGGLQRRFALPEQLAREESPAQTQAGNNNHE" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"G7710-MONOMER" "type II secretion system minor pseudopilin GspK" ["YheJ", "GspK"] "MNNEQRGVALLIVLMLLALMAALAADMTLSFHSQLQRTRQVNHHLQRQYDIELAEKLALASLTQDVKDNDRQTTLQQYWAQPQQLQLEDGNTVKWQLRDAQHCFNLNALAKISDDPLASPDFPAQVFSALLINAGIDRGNTDEIVQSIADYIDVDDSPRFHGAEDSFYQSQTPPRHSANQMLFLTGELRQIKGITENIYQRLIPYVCVLPTTELSINLNMLTENDIPLFRALFLNNITDADARVLLQKRPREGWLTTDAFLYWAQQDFSGVKPLVAQVKRHLFPYSRYFTLSTESISDEQSQGWQSHIFFNRKQQSAQIYRRTLQLY" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 -"G7711-MONOMER" "type II secretion system protein GspL" ["YheK", "GspL"] "MPESLMVIRSSSTLRKHWEWMTFSADSVSSVHTLTDDLPLESLADQPGAGNVHLLIPPEGLLYRSLTLPNAKYKLTAQTLQWLAEETLPDNTQDWHWTVVDKQNESVEVIGIQSEKLSRYLERLHTAGLNVTRVLPDGCYLPWEVDSWTLVNQQTSWLIRSAAHAFNELDEHWLQHLAAQFPPENMLCYGVVPHGVAAANPLIQHPEIPSLSLYSADIAFQRYDMLHGIFRKQKTVSKSGKWLARLAVSCLVLAILSFVGSRSIALWHTLKIEDQLQQQQQETWQRYFPQIKRTHNFRFYFKQQLAQQYPEAVPLLYHLQTLLLEHPELQLMEANYSQKQKSLTLKMSAKSEANIDRFCELTQSWLPMEKTEKDPVSGVWTVRNSGK" ["CCO-PM-BAC-NEG"] ["CCO-CW-BAC-NEG", "CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"G7701-MONOMER" "cryptic type II secretion system protein GspA" ["YheD", "GspA"] "MSTRREVILSWLCEKRQTWRLCYLLGEAGSGKTWLAQQLQKDKHRRVITLSLVVSWQGKAAWIVTDDNAAEQGCRDSAWTRDEMAGQLLHALHRTDSRCPLIIIENAHLNHRRILDDLQRAISLIPDGQFLLIGRPDRKVERDFKKQGIELVSIGRLTEHELKASILEGQNIDQPDLLLTARVLKRIALLCRGDRRKLALAGETIRLLQQAEQTSVFTAKQWRMIYRILGDNRPRKMQLAVVMSGTIIALTCGWLLLSSFTATLPVPAWLIPVTPVVKQDMTKDIAHVVMRDSEALSVLYGVWGYEVPADSAWCDQAVRAGLACKSGNASLQTLVDQNLPWIASLKVGDKKLPVVVVRVGEASVDVLVGQQTWTLTHKWFESVWTGDYLLLWKMSPEGESTITRDSSEEEILWLETMLNRALHISTEPSAEWRPLLVEKIKQFQKSHHLKTDGVVGFSTLVHLWQVAGESAYLYRDEANISPETTVKGK" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 +"G7702-MONOMER" "cryptic type II secretion system protein GspC" ["YheE", "GspC"] "MPTLRFPFHLANHNKDAAINILIIFISIGSIIFNVNYFHTTIVKNGQIINQPTNAFQSDFSLAALWRNENHAGVKDANPVAVNQETPKLSIALNGIVLTSNDETSFVLINEGSEQKRYSLNEALESAPGTFIRKINKTSVVFETHGHYEKVTLHPGLPDIIKQPDSESQNVLADYIIATPIRDGEQIYGLRLNPRKGLNAFTTSLLQPGDIALRINNLSLTHPDEVSQALSLLLTQQSAQFTIRRNGVPRLINVSVGELTGMNGLRHERTQ" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"G7703-MONOMER" "cryptic type II secretion system secretin GspDα" ["GspD", "YheF", "GspDα"] "MKGLNKITCCLLAALLMPCAGHAENEQYGANFNNADIRQFVEIVGQHLGKTILIDPSVQGTISVRSNDTFSQQEYYQFFLSILDLYGYSVITLDNGFLKVVRSANVKTSPGMIADSSRPGVGDELVTRIVPLENVPARDLAPLLRQMMDAGSVGNVVHYEPSNVLILTGRASTINKLIEVIKRVDVIGTEKQQIIHLEYASAEDLAEILNQLISESHGKSQMPALLSAKIVADKRTNSLIISGPEKARQRITSLLKSLDVEESEEGNTRVYYLKYAKATNLVEVLTGVSEKLKDEKGNARKPSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIRRAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKSKALVGSEDLPVLDENTFNSHAPAPSSR" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 +"G7704-MONOMER" "cryptic type II secretion system ATPase GspE" ["YheG", "GspE"] "MRIHSPYPASWALAQRIGYLYSEGEIIYLADTPFERLLDIQRQVGQCQTMTSLSQADFEARLEAVFHQNTGESQQIAQDIDQSVDLLSLSEEMPANEDLLNEDSAAPVIRLINAILSEAIKETASDIHIETYEKTMSIRFRIDGVLRTILQPNKKLAALLISRIKVMARLDIAEKRIPQDGRISLRIGRRNIDVRVSTLPSIYGERAVLRLLDKNSLQLSLNNLGMTAADKQDLENLIQLPHGIILVTGPTGSGKSTTLYAILSALNTPGRNILTVEDPVEYELEGIGQTQVNTRVDMSFARGLRAILRQDPDVVMVGEIRDTETAQIAVQASLTGHLVLSTLHTNSASGAVTRLRDMGVESFLLSSSLAGIIAQRLVRRLCPQCRQFTPVSPQQAQMFKYHQLAVTTIGTPVGCPHCHQSGYQGRMAIHEMMVVTPELRAAIHENVDEQALERLVRQQHKALIKNGLQKVISGDTSWDEVMRVASATLESEA" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 +"G7705-MONOMER" "cryptic type II secretion system protein GspF" ["HopF", "GspF", "HofF"] "MNYRYRAMTQDGQKLQGIIDANDERQARLRLREEGLFLLDIRPQKSSGVKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEGHPLSDALQHFPTLFDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQSLIYPCMLTTVAIGVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPTLLATVFIVAVGFWLWLKRGNNRHRFHAMLLRVALIGPLICAINSARYLRTLSILQSSGVPLLDGMNLSTESLNNLEIRQRLANAAENVRQGNSIHLSLEQTAIFPPMMLYMVASGEKSGQLGTLMVRAADNQETLQQNRIALTLSIFEPALIITMALIVLFIVVSVLQPLLQLNSMIN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"CA+2": 1} 1 +"G7706-MONOMER" "cryptic type II secretion system major pseudopilin GspG" ["HopG", "GspG", "HofG"] "MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLLSAGPDGEMGTEDDITNWGLSKKKK" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"G7707-MONOMER" "cryptic type II secretion system minor pseudopilin GspH" ["HopH", "GspH", "HofH"] "MNQQRGFTLLEMMLVLALVAITASVVLFTYGREDVASTRARETAARFTAALELAIDRATLSGQPVGIHFSDSAWRIMVPGKTPSAWRWVPLQEDAADESQNDWDEELSIHLQPFKPDDSNQPQVVILADGQITPFSLLMANAGTGEPLLTLVCSGSWPLDQTLARDTRP" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"G7708-MONOMER" "cryptic type II secretion system minor pseudopilin GspI" ["YheH", "GspI"] "MNKQSGMTLLEVLLAMSIFTAVALTLMSSMQGQRNAIERMRNETLALWIADNQLQSQDSFGEENTSSSGKELINGEEWNWRSDIHSSKDGTLLERTITVTLPSGQTTSLTRYQSIDNKSGQAQDD" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"G7709-MONOMER" "cryptic type II secretion system minor pseudopilin GspJ" ["YheI", "GspJ"] "MINRQQGFTLLEVMAALAIFSMLSVLAFMIFSQASELHQRSQKEIQQFNQLQRTITILDNDLLQLVARRNRSTDKIMVLGEEAIFTTQSRDPLAPLSEAQTLLTVHWYLRNHTLYRAVRTSVDGRKDQPAQAMLEHVESFLLESNSGESQELPLSVTLHLQTQQYGGLQRRFALPEQLAREESPAQTQAGNNNHE" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"G7710-MONOMER" "cryptic type II secretion system minor pseudopilin GspK" ["YheJ", "GspK"] "MNNEQRGVALLIVLMLLALMAALAADMTLSFHSQLQRTRQVNHHLQRQYDIELAEKLALASLTQDVKDNDRQTTLQQYWAQPQQLQLEDGNTVKWQLRDAQHCFNLNALAKISDDPLASPDFPAQVFSALLINAGIDRGNTDEIVQSIADYIDVDDSPRFHGAEDSFYQSQTPPRHSANQMLFLTGELRQIKGITENIYQRLIPYVCVLPTTELSINLNMLTENDIPLFRALFLNNITDADARVLLQKRPREGWLTTDAFLYWAQQDFSGVKPLVAQVKRHLFPYSRYFTLSTESISDEQSQGWQSHIFFNRKQQSAQIYRRTLQLY" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 +"G7711-MONOMER" "cryptic type II secretion system protein GspL" ["YheK", "GspL"] "MPESLMVIRSSSTLRKHWEWMTFSADSVSSVHTLTDDLPLESLADQPGAGNVHLLIPPEGLLYRSLTLPNAKYKLTAQTLQWLAEETLPDNTQDWHWTVVDKQNESVEVIGIQSEKLSRYLERLHTAGLNVTRVLPDGCYLPWEVDSWTLVNQQTSWLIRSAAHAFNELDEHWLQHLAAQFPPENMLCYGVVPHGVAAANPLIQHPEIPSLSLYSADIAFQRYDMLHGIFRKQKTVSKSGKWLARLAVSCLVLAILSFVGSRSIALWHTLKIEDQLQQQQQETWQRYFPQIKRTHNFRFYFKQQLAQQYPEAVPLLYHLQTLLLEHPELQLMEANYSQKQKSLTLKMSAKSEANIDRFCELTQSWLPMEKTEKDPVSGVWTVRNSGK" ["CCO-PM-BAC-NEG"] ["CCO-CW-BAC-NEG", "CCO-PM-BAC-NEG"] 0 [] {} 1 "G7712-MONOMER" "sulfurtransferase complex subunit TusB" ["TusB", "YheL"] "MLHTLHRSPWLTDFAALLRLLSEGDELLLLQDGVTAAVDGNRYLESLRNAPIKVYALNEDLIARGLTGQISNDIILIDYTDFVRLTVKHPSQMAW" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7713-MONOMER" "sulfurtransferase complex subunit TusC" ["YheM", "TusC"] "MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIADGVFQLLPGQKPDAVLARDYIATFKLLGLYDIEQCWVCAASLRERGLDPQTPFVVEATPLEADALRRELANYDVILRF" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7714-MONOMER" "sulfurtransferase complex subunit TusD" ["YheN", "TusD"] "MRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVFFYREGVYNANQLTSPASDEFDLVRAWQQLNAQHGVALNICVAAALRRGVVDETEAGRLGLASSNLQQGFTLSGLGALAEASLTCDRVVQF" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7715-MONOMER" "DNA-binding transcriptional regulator YheO" ["YheO", "SrrA"] "MSRSLLTNETSELDLLDQRPFDQTDFDILKSYEAVVDGLAMLIGSHCEIVLHSLQDLKCSAIRIANGEHTGRKIGSPITDLALRMLHDMTGADSSVSKCYFTRAKSGVLMKSLTIAIRNREQRVIGLLCINMNLDVPFSQIMSTFVPPETPDVGSSVNFASSVEDLVTQTLEFTIEEVNADRNVSNNAKNRQIVLNLYEKGIFDIKDAINQVADRLNISKHTVYLYIRQFKSGDFQGQDK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G7716-MONOMER" "peptidyl-prolyl cis-trans isomerase/OMP chaperone FkpA" ["YzzS", "FkpA"] "MKSLFKVTLLATTMAVALHAPITFAAEAAKPATAADSKAAFKNDDQKSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTLQAFEARVKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPGIPPNSTLVFDVELLDVKPAPKADAKPEADAKAADSAKK" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 -"G7717-MONOMER" "glutathione-regulated potassium-efflux system ancillary protein KefG" ["KefG", "YheR", "protein required for KefB activity"] "MMSQPAKVLLLYAHPESQDSVANRVLLKPATQLSNVTVHDLYAHYPDFFIDIPREQALLREHEVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNQLAGKYWRSVITTGEPESAYRYDALNRYPMSDVLRPFELAAGMCRMHWLSPIIIYWARRQSAQELASHARAYGDWLANPLSPGGR" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 +"G7717-MONOMER" "glutathione-regulated potassium-efflux system ancillary protein KefG" ["KefG", "YheR", "protein required for KefB activity"] "MMSQPAKVLLLYAHPESQDSVANRVLLKPATQLSNVTVHDLYAHYPDFFIDIPREQALLREHEVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNQLAGKYWRSVITTGEPESAYRYDALNRYPMSDVLRPFELAAGMCRMHWLSPIIIYWARRQSAQELASHARAYGDWLANPLSPGGR" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "G7718-MONOMER" "putative hydrolase YheT" ["YheT"] "MAQITTTDANEFSSSAEFIPMRGFSNCHLQTMLPRLFRRQVKFTPYWQRLELPDGDFVDLAWSENPAQAQHKPRLVVFHGLEGSLNSPYAHGLVEAAQKRGWLGVVMHFRGCSGEPNRMHRIYHSGETEDASWFLRWLQREFGHAPTAAVGYSLGGNMLACLLAKEGNDLPVDAAVIVSAPFMLEACSYHMEKGFSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRIREFDDLITARIHGYADAIDYYRQCSAMPMLNRIAKPTLIIHAKDDPFMDHQVIPKPESLPPQVEYQLTEHGGHVGFIGGTLLHPQMWLESRIPDWLTTYLEAKSC" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL"] 0 [] {} 0 "G7719-MONOMER" "PF06794 family protein YheU" ["YheU", "UPF0270 family protein YheU"] "MLIPWQDLSPETLENLIESFVLREGTDYGEHERTLEQKVADVKRQLQCGEAVLVWSELHETVNIMPRSQFRE" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7721-MONOMER" "putative transporter YhfK" ["YhfK"] "MFPPMWRRLIYHPDINYALRQTLVLCLPVAVGLMLGELRFGLLFSLVPACCNIAGLDTPHKRFFKRLIIGASLFATCSLLTQLLLAKDVPLPFLLTGLTLVLGVTAELGPLHAKLLPASLLAAIFTLSLAGYMPVWEPLLIYALGTLWYGLFNWFWFWIWREQPLRESLSLLYRELADYCEAKYSLLTQHTDPEKALPPLLVRQQKAVDLITQCYQQMHMLSAQNNTDYKRMLRIFQEALDLQEHISVSLHQPEEVQKLVERSHAEEVIRWNAQTVAARLRVLADDILYHRLPTRFTMEKQIGALEKIARQHPDNPVGQFCYWHFSRIARVLRTQKPLYARDLLADKQRRMPLLPALKSYLSLKSPALRNAGRLSVMLSVASLMGTALHLPKSYWILMTVLLVTQNGYGATRLRIVNRSVGTVVGLIIAGVALHFKIPEGYTLTLMLITTLASYLILRKNYGWATVGFTITAVYTLQLLWLNGEQYILPRLIDTIIGCLIAFGGTVWLWPQWQSGLLRKNAHDALEAYQEAIRLILSEDPQPTPLAWQRMRVNQAHNTLYNSLNQAMQEPAFNSHYLADMKLWVTHSQFIVEHINAMTTLAREHRALPPELAQEYLQSCEIAIQRCQQRLEYDEPGSSGDANIMDAPEMQPHEGAAGTLEQHLQRVIGHLNTMHTISSMAWRQRPHHGIWLSRKLRDSKA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7721-MONOMER" "putative transporter YhfK" ["YhfK"] "MFPPMWRRLIYHPDINYALRQTLVLCLPVAVGLMLGELRFGLLFSLVPACCNIAGLDTPHKRFFKRLIIGASLFATCSLLTQLLLAKDVPLPFLLTGLTLVLGVTAELGPLHAKLLPASLLAAIFTLSLAGYMPVWEPLLIYALGTLWYGLFNWFWFWIWREQPLRESLSLLYRELADYCEAKYSLLTQHTDPEKALPPLLVRQQKAVDLITQCYQQMHMLSAQNNTDYKRMLRIFQEALDLQEHISVSLHQPEEVQKLVERSHAEEVIRWNAQTVAARLRVLADDILYHRLPTRFTMEKQIGALEKIARQHPDNPVGQFCYWHFSRIARVLRTQKPLYARDLLADKQRRMPLLPALKSYLSLKSPALRNAGRLSVMLSVASLMGTALHLPKSYWILMTVLLVTQNGYGATRLRIVNRSVGTVVGLIIAGVALHFKIPEGYTLTLMLITTLASYLILRKNYGWATVGFTITAVYTLQLLWLNGEQYILPRLIDTIIGCLIAFGGTVWLWPQWQSGLLRKNAHDALEAYQEAIRLILSEDPQPTPLAWQRMRVNQAHNTLYNSLNQAMQEPAFNSHYLADMKLWVTHSQFIVEHINAMTTLAREHRALPPELAQEYLQSCEIAIQRCQQRLEYDEPGSSGDANIMDAPEMQPHEGAAGTLEQHLQRVIGHLNTMHTISSMAWRQRPHHGIWLSRKLRDSKA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7722-MONOMER" "DUF4223 domain-containing lipoprotein YhfL" ["YhfL"] "MNKFIKVALVGAVLATLTACTGHIENRDKNCSYDYLLHPAISISKIIGGCGPTAQ" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7723-MONOMER" "fructoselysine 6-phosphate deglycase" ["YhfN", "FrlB"] "MLDIDKSTVDFLVTENMVQEVEKVLSHDVPLVHAIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDLQVYAISGWEFCDNTPYRLDDRCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQADCIWEIHLLLCYSVVLEMITRLAPNAEIGKIKNDLKQLPNALGHLVRTWEEKGRQLGELASQWPMIYTVAAGPLRPLGYKEGIVTLMEFTWTHGCVIESGEFRHGPLEIVEPGVPFLFLLGNDESRHTTERAINFVKQRTDNVIVIDYAEISQGLHPWLAPFLMFVPMEWLCYYLSIYKDHNPDERRYYGGLVEY" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7724-MONOMER" "fructoselysine 3-epimerase" ["YhfP", "YhfO", "FrlC"] "MKTGMFTCGHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNANDVLHALALVPSPRLFSMVDICAPYVQAEPVMSYFDKLGDKLRHLHIVDSDGASDTHYIPGEGKMPLRELMRDIIERGYEGYCTVELVTMYMNEPRLYARQALERFRALLPEDER" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "G7726-MONOMER" "fructoselysine 6-kinase" ["YhfQ", "FrlD"] "MKTLATIGDNCVDIYPQLNKAFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLKQDLARMGVDISHVHTKHGVTAQTQVELHDNDRVFGDYTEGVMADFALSEEDYAWLAQYDIVHAAIWGHAEDAFPQLHAAGKLTAFDFSDKWDSPLWQTLVPHLDFAFASAPQEDETLRLKMKAIVARGAGTVIVTLGENGSIAWDGAQFWRQAPEPVTVIDTMGAGDSFIAGFLCGWSAGMTLPQAIAQGTACAAKTIQYHGAW" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7727-MONOMER" "DNA-binding transcriptional regulator FrlR" ["YhfR", "FrlR"] "MSATDRYSHQLLYATVRQRLLDDIAQGVYQAGQQIPTENELCTQYNVSRITIRKAISDLVADGVLIRWQGKGTFVQSQKVENALLTVSGFTDFGVSQGKATKEKVIEQERVSAAPFCEKLNIPGNSEVFHLCRVMYLDKEPLFIDSSWIPLSRYPDFDEIYVEGSSTYQLFQERFDTRVVSDKKTIDIFAATRPQAKWLKCELGEPLFRISKIAFDQNDKPVHVSELFCRANRITLTIDNKRH" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7728-MONOMER" "putative aminotransferase YhfS" ["YhfS"] "MKTFPLQSLTIIEAQQKQFALVDSICRHFPGSEFLTGGDLGLTPGLNQPRVTQRVEQVLADAFHAQAAALVQGAGTGAIRAGLAALLKPGQRLLVHDAPVYPTTRVIIEQMGLTLITVDFNDLSALKQVVDEQQPDAALVQHTRQQPQDSYVLADVLATLRAAGVPALTDDNYAVMKVARIGCECGANVSTFSCFKLFGPEGVGAVVGDADVINRIRATLYSGGSQIQGAQALEVLRGLVFAPVMHAVQAGVSERLLALLNGGAVPEVKSAVIANAQSKVLIVEFHQPIAARVLEEAQKRGALPYPVGAESKYEIPPLFYRLSGTFRQANPQSEHCAIRINPNRSGEETVLRILRESIASI" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7729-MONOMER" "uncharacterized protein YhfT" ["YhfT"] "MDLYIQIIVVACLTGMTSLLAHRSAAVFHDGIRPILPQLIEGYMNRREAGSIAFGLSIGFVASVGISFTLKTGLLNAWLLFLPTDILGVLAINSLMAFGLGAIWGVLILTCLLPVNQLLTALPVDVLGSLGELSSPVVSAFALFPLVAIFYQFGWKQSLIAAVVVLMTRVVVVRYFPHLNPESIEIFIGMVMLLGIAITHDLRHRDENDIDASGLSVFEERTSRIIKNLPYIAIVGALIAAVASMKIFAGSEVSIFTLEKAYSAGVTPEQSQTLINQAALAEFMRGLGFVPLIATTALATGVYAVAGFTFVYAVDYLSPNPMVAAVLGAVVISAEVLLLRSIGKWLGRYPSVRNASDNIRNAMNMLMEVALLVGSIFAAIKMAGYTGFSIAVAIYFLNESLGRPVQKMAAPVVAVMITGILLNVLYWLGLFVPA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7729-MONOMER" "uncharacterized protein YhfT" ["YhfT"] "MDLYIQIIVVACLTGMTSLLAHRSAAVFHDGIRPILPQLIEGYMNRREAGSIAFGLSIGFVASVGISFTLKTGLLNAWLLFLPTDILGVLAINSLMAFGLGAIWGVLILTCLLPVNQLLTALPVDVLGSLGELSSPVVSAFALFPLVAIFYQFGWKQSLIAAVVVLMTRVVVVRYFPHLNPESIEIFIGMVMLLGIAITHDLRHRDENDIDASGLSVFEERTSRIIKNLPYIAIVGALIAAVASMKIFAGSEVSIFTLEKAYSAGVTPEQSQTLINQAALAEFMRGLGFVPLIATTALATGVYAVAGFTFVYAVDYLSPNPMVAAVLGAVVISAEVLLLRSIGKWLGRYPSVRNASDNIRNAMNMLMEVALLVGSIFAAIKMAGYTGFSIAVAIYFLNESLGRPVQKMAAPVVAVMITGILLNVLYWLGLFVPA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7730-MONOMER" "DUF2620 domain-containing protein YhfU" ["YhfU"] "MKKIGVAGLQREQIKKTIEATAPGCFEVFIHNDMEAAMKVKSGQLDYYIGACNTGAGAALSIAIAVIGYNKSCTIAKPGIKAKDEHIAKMIAEGKVAFGLSVEHVEHAIPMLINHLK" [] ["CCO-MEMBRANE"] 0 [] {} 0 "G7731-MONOMER" "putative hydrolase" ["YhfV", "Php"] "MSFDPTGYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGTSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGYDYLLTTFIPQLRQSGFSQADVDVMLRENPSQFFQ" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"ZN+2": 2} 0 "G7732-MONOMER" "putative mutase YhfW" ["YhfW"] "MARFVVLVIDSFGVGAMKDVTLVRPQDAGANTCGHILSQLPHLQLPTLETLGLINALGYAPGDMQPSDSATWGVAELQHEGGDTFMGHQEILGTRPLPPLRMPFRDVIDRVEQALVSAGWQVERRGDDLQFLWVNQAVAIGDNLEADLGQVYNITANLSVISFDDAIKIGRIVREQVQVGRVITFGGLLTDSQRILDAAESKEGRFIGINAPRSGAYDNGFQVVHMGYGVDEKVQVPQKLYEAGVPTVLVGKVADIVNNPYGVSWQNLVDSQRIMDITLNEFNTHPTAFICTNIQETDLAGHAEDVARYAERLQVVDRNLARLVEAMQPDDCLVVMADHGNDPTIGHSHHTREVVPVLVYQQGMIATQLGVRTTLSDVGATVCEFFRAPPPQNGRSFLSSLRFAGDTL" [] ["CCO-CYTOSOL"] 0 [] {"MN+2": 1} 0 @@ -3102,15 +3102,15 @@ "G7734-MONOMER" "PRD domain-containing protein YhfY" ["YhfY"] "METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7735-MONOMER" "putative DNA-binding transcriptional regulator YhfZ" ["YhfZ"] "MRRTFIKKEGVVITTLARYLLGEKCGNRLKTIDELANECRSSVGLTQAALKTLESSGAIRIERRGRNGSYLVEMDNKALLTHVDINNVVCAMPLPYTRLYEGLASGLKAQFDGIPFYYAHMRGADIRVECLLNGVYDMAVVSRLAAESYLTQKGLCLALELGPHTYVGEHQLICRKGESANVKRVGLDNRSADQKIMTDVFFGGSDVERVDLSYHESLQRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVVDKHALLAHQQRVVSGEQEPSY" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7736-MONOMER" "DNA utilization protein HofP" ["HofP", "YrfA", "protein involved in utilization of DNA as a carbon source"] "MRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRGERIIGVIKDGQKKWRRVQQNDVLENGWTILQLTPDVLTLGTGTNCEPPQWLWQRQGDTNEAMDSRTTVDADTRRTGGKAAKSDADGG" [] [] 0 [] {} 0 -"G7737-MONOMER" "DNA utilization protein HofO" ["HofO", "YrfB", "protein involved in utilization of DNA as a carbon source"] "MNMFFDWWFATSPRLRQLCWAFWLLMLVTLIFLSSTHHEERDALIRLRASHHQQWAALYRLVDTAPFSEEKTLPFSPLDFQLSGAQLVSWHPSAQGGELALKTLWEAVPSAFTRLAERNVSVSRFSLSVEGDDLLFTLQLETPHEG" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7738-MONOMER" "DNA utilization protein HofN" ["HofN", "YrfC", "protein involved in utilization of DNA as a carbon source"] "MNPPINFLPWRQQRRTAFLRFWLLMFVAPLLLAVGITLILRLTGSAEARIDAVLLQAEQQLARSLQITKPRLLEQQQLREQRSQRQRQRQFTRDWQSALEALAALLPEHAWLTTISWQQGTLEIKGLTTSITALNALETSLRQDASFHLNQRGATQQDAQGRWQFEYQLTRKVSDEHVL" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7737-MONOMER" "DNA utilization protein HofO" ["HofO", "YrfB", "protein involved in utilization of DNA as a carbon source"] "MNMFFDWWFATSPRLRQLCWAFWLLMLVTLIFLSSTHHEERDALIRLRASHHQQWAALYRLVDTAPFSEEKTLPFSPLDFQLSGAQLVSWHPSAQGGELALKTLWEAVPSAFTRLAERNVSVSRFSLSVEGDDLLFTLQLETPHEG" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7738-MONOMER" "DNA utilization protein HofN" ["HofN", "YrfC", "protein involved in utilization of DNA as a carbon source"] "MNPPINFLPWRQQRRTAFLRFWLLMFVAPLLLAVGITLILRLTGSAEARIDAVLLQAEQQLARSLQITKPRLLEQQQLREQRSQRQRQRQFTRDWQSALEALAALLPEHAWLTTISWQQGTLEIKGLTTSITALNALETSLRQDASFHLNQRGATQQDAQGRWQFEYQLTRKVSDEHVL" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7739-MONOMER" "DNA utilization protein HofM" ["HofM", "YrfD", "protein involved in utilization of DNA as a carbon source"] "MAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQQLAKTLLPWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDASALQRFLPFLPSHQQCLAWRDNEQWLWATRYSWGRKLAVGMTSAKELAAALSVDPESVAICGEGGFDPWEAVSVRQPPLPPPGGDFAIALGLALGKAY" [] [] 0 [] {} 0 "G7740-MONOMER" "ADP-sugar diphosphatase NudE" ["NudE", "YrfE", "ADP-sugar pyrophosphorylase"] "MSKSLQKPTILNVETVARSRLFTVESVDLEFSNGVRRVYERMRPTNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSALFLVREWLKGQGRV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 -"G7741-MONOMER" "inner membrane protein IgaA" ["YrfF", "IgaA"] "MSTIVIFLAALLACSLLAGWLIKVRSRRRQLPWTNAFADAQTRKLTPEERSAVENYLESLTQVLQVPGPTGASAAPISLALNAESNNVMMLTHAITRYGISTDDPNKWRYYLDSVEVHLPPFWEQYINDENTVELIHTDSLPLVISLNGHTLQEYMQETRSYALQPVPSTQASIRGEESEQIELLNIRKETHEEYALSRPRGLREALLIVASFLMFFFCLITPDVFVPWLAGGALLLLGAGLWGLFAPPAKSSLREIHCLRGTPRRWGLFGENDQEQINNISLGIIDLVYPAHWQPYIAQDLGQQTDIDIYLDRHVVRQGRYLSLHDEVKNFPLQHWLRSTIIAAGSLLVLFMLLFWIPLDMPLKFTLSWMKGAQTIEATSVKQLADAGVRVGDTLRISGTGMCNIRTSGTWSAKTNSPFLPFDCSQIIWNDARSLPLPESELVNKATALTEAVNRQLHPKPEDESRVSASLRSAIQKSGMVLLDDFGDIVLKTADLCSAKDDCVRLKNALVNLGNSKDWDALVKRANAGKLDGVNVLLRPVSAESLDNLVATSTAPFITHETARAAQSLNSPAPGGFLIVSDEGSDFVDQPWPSASLYDYPPQEQWNAFQKLAQMLMHTPFNAEGIVTKIFTDANGTQHIGLHPIPDRSGLWRYLSTTLLLLTMLGSAIYNGVQAWRRYQRHRTRMMEIQAYYESCLNPQLITPSESLIE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7741-MONOMER" "inner membrane protein involved in phosphorelay system" ["YrfF", "IgaA"] "MSTIVIFLAALLACSLLAGWLIKVRSRRRQLPWTNAFADAQTRKLTPEERSAVENYLESLTQVLQVPGPTGASAAPISLALNAESNNVMMLTHAITRYGISTDDPNKWRYYLDSVEVHLPPFWEQYINDENTVELIHTDSLPLVISLNGHTLQEYMQETRSYALQPVPSTQASIRGEESEQIELLNIRKETHEEYALSRPRGLREALLIVASFLMFFFCLITPDVFVPWLAGGALLLLGAGLWGLFAPPAKSSLREIHCLRGTPRRWGLFGENDQEQINNISLGIIDLVYPAHWQPYIAQDLGQQTDIDIYLDRHVVRQGRYLSLHDEVKNFPLQHWLRSTIIAAGSLLVLFMLLFWIPLDMPLKFTLSWMKGAQTIEATSVKQLADAGVRVGDTLRISGTGMCNIRTSGTWSAKTNSPFLPFDCSQIIWNDARSLPLPESELVNKATALTEAVNRQLHPKPEDESRVSASLRSAIQKSGMVLLDDFGDIVLKTADLCSAKDDCVRLKNALVNLGNSKDWDALVKRANAGKLDGVNVLLRPVSAESLDNLVATSTAPFITHETARAAQSLNSPAPGGFLIVSDEGSDFVDQPWPSASLYDYPPQEQWNAFQKLAQMLMHTPFNAEGIVTKIFTDANGTQHIGLHPIPDRSGLWRYLSTTLLLLTMLGSAIYNGVQAWRRYQRHRTRMMEIQAYYESCLNPQLITPSESLIE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7742-MONOMER" "purine nucleotidase" ["YrfG"] "MHINIAWQDVDTVLLDMDGTLLDLAFDNYFWQKLVPETWGAKNGVTPQEAMEYMRQQYHDVQHTLNWYCLDYWSEQLGLDICAMTTEMGPRAVLREDTIPFLEALKASGKQRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWHAVAEATGLKAERTLFIDDSEAILDAAAQFGIRYCLGVTNPDSGIAEKQYQRHPSLNDYRRLIPSLM" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "G7743-MONOMER" "heat shock protein Hsp15" ["YrfH", "HslR", "Hsp15", "heat shock protein Hsp15 involved in ribosome recycling"] "MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFKHGDSE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G7744-MONOMER" "molecular chaperone Hsp33" ["YrfI", "HslO", "Hsp33"] "MPQHDQLHRYLFENFAVRGELVTVSETLQQILENHDYPQPVKNVLAELLVATSLLTATLKFDGDITVQLQGDGPMNLAVINGNNNQQMRGVARVQGEIPENADLKTLVGNGYVVITITPSEGERYQGVVGLEGDTLAACLEDYFMRSEQLPTRLFIRTGDVDGKPAAGGMLLQVMPAQNAQQDDFDHLATLTETIKTEELLTLPANEVLWRLYHEEEVTVYDPQDVEFKCTCSRERCADALKTLPDEEVDSILAEDGEIDMHCDYCGNHYLFNAMDIAEIRNNASPADPQVH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7745-MONOMER" "putative transport protein YhgE" ["YhgE"] "MDNVELSPATRWGMIATGLLQGLVCYLLIAWLSGKNHSWIVYGVPATVAFSSVLLFSVISFKQKRLWGWLALVFIATLGMSGWLKWQTDGMNPWRAEKALWDFGCYLLLMAMLLLPWIQQSLRIRNDSSRYRYFYQSVWHNVLILLVIFLANGLTWLVLLLWSELFKLVGITFFNTLFFATDWFIYLTLGLVTALAVILARTQSRLIDSIQKLFTLIATGLLPLVSLLTLMFIITLPFTGLSAISRHISAAGLLLTLAFLQLILMAIVRDPQKASLPWTGPLRCLIKTALLVAPLYVFVAAWALWLRVAQYGWTVDRLQGVLAVLVLLVWSLGYFVSIVWRKGQNPVVLQGKVNLAVSLLVLVILVLLNSPVLDSMRISVNSHMARYQSGKNTSDQVTIYMLEQSGRYGRAALESLKSDAGFMKDPKRARDLLMALDGEQHLQQQVSEKVLADNVLIAPGSVKPDATFWSALIQDRYNVMTCIEKDACVLVEQDLNSDGQAERILFAFNDDRVIVYGFDSDRKEWDALDMSLLPNEITKEKLLTAAKDGKLGTKPKAWRDLVVDGERLNVNLNE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7745-MONOMER" "putative transport protein YhgE" ["YhgE"] "MDNVELSPATRWGMIATGLLQGLVCYLLIAWLSGKNHSWIVYGVPATVAFSSVLLFSVISFKQKRLWGWLALVFIATLGMSGWLKWQTDGMNPWRAEKALWDFGCYLLLMAMLLLPWIQQSLRIRNDSSRYRYFYQSVWHNVLILLVIFLANGLTWLVLLLWSELFKLVGITFFNTLFFATDWFIYLTLGLVTALAVILARTQSRLIDSIQKLFTLIATGLLPLVSLLTLMFIITLPFTGLSAISRHISAAGLLLTLAFLQLILMAIVRDPQKASLPWTGPLRCLIKTALLVAPLYVFVAAWALWLRVAQYGWTVDRLQGVLAVLVLLVWSLGYFVSIVWRKGQNPVVLQGKVNLAVSLLVLVILVLLNSPVLDSMRISVNSHMARYQSGKNTSDQVTIYMLEQSGRYGRAALESLKSDAGFMKDPKRARDLLMALDGEQHLQQQVSEKVLADNVLIAPGSVKPDATFWSALIQDRYNVMTCIEKDACVLVEQDLNSDGQAERILFAFNDDRVIVYGFDSDRKEWDALDMSLLPNEITKEKLLTAAKDGKLGTKPKAWRDLVVDGERLNVNLNE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7746-MONOMER" "RNA-binding protein YhgF" ["YhgF"] "MMNDSFCRIIAGEIQARPEQVDAAVRLLDEGNTVPFIARYRKEITGGLDDTQLRNLETRLSYLRELEERRQAILKSISEQGKLTDDLAKAINATLSKTELEDLYLPYKPKRRTRGQIAIEAGLEPLADLLWSDPSHTPEVAAAQYVYADKGVADTKAALDGARYILMERFAEDAALLAKVRDYLWKNAHLVSTVVSGKEEEGAKFRDYFDHHEPLSTVPSHRALAMFRGRNEGVLQLSLNADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVRERAEDEAINVFARNLHDLLMAAPAGLRATMGLDPGLRTGVKVAVVDATGKLVATDTIYPHTGQAAKAAMTVAALCEKHNVELVAIGNGTASRETERFYLDVQKQFPKVTAQKVIVSEAGASVYSASELAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLARKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLKVSRLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAATQQALKDLMGNSSELRNLKASDFTDEKFGVPTVTDIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPGETNARRGGGNERPQNNRPAAKPRGREAQPAGNSAMMDALAAAMGKKR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G7747-MONOMER" "DNA utilization protein YhgH" ["YhgH", "GntX", "protein involved in utilization of DNA as a carbon source"] "MLTVPGLCWLCRMPLALGHWGICSVCSRATRTDKTLCPQCGLPATHSHLPCGRCLQKPPPWQRLVTVADYAPPLSPLIHQLKFSRRSEIASALSRLLLLEVLHARRTTGLQLPDRIVSVPLWQRRHWRRGFNQSDLLCQPLSRWLHCQWDSEAVTRTRATATQHFLSARLRKRNLKNAFRLELPVQGRHMVIVDDVVTTGSTVAEIAQLLLRNGAAAVQVWCLCRTL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7748-MONOMER" "iron-sulfur cluster carrier protein NfuA" ["YhgI", "GntY", "NfuA", "iron-sulfur cluster insertion protein NfuA"] "MIRISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFDLLTAYVDELSAPYLEDAEIDFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYMLQSQINPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRDLTEHQRGEHSYY" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 1 @@ -3123,23 +3123,23 @@ "G7758-MONOMER" "N-acetyltransferase YhhY" ["YhhY"] "MSEIVIRHAETRDYEAIRQIHAQPEVYCNTLQVPHPSDHMWQERLADRPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVADFGICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEYVDAYYMARVK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7759-MONOMER" "putative endonuclease YhhZ" ["YhhZ"] "MSNIVYLTVTGEQQGSISAGCGTSESTGNRWQSGHEDEIFTFSLLNNINNTGLGSQFHGITFCKLIDKSTPLFINSINNNEQLFMGFDFYRINRFGRLEKYYYIQLRGAFLSAIHHQIIENQLDTETITISYEFILCQHLIANTEFSYLALPENYNRLFLPNSKNQTNNRFKTLNSKAIGRLLAAGGVYNGNIEGFRDTAEKLGGDAIKGYDQILNEKTAGIAIATASILLTKRSNVDTYTEINSYLGKLRGQQKLLDGIDIIEIIYIKRPSKDLANLRKEFNKTVRKNFLIKLAKTSEASGRFNAEDLLRMRKGNVPLNYNVHHKLSLDDGGTNDFENLVLIENEPYHKVFTNMQSRIAKGILVGESKITPWAIPSGSIYPPMKNIMDHTK" [] ["CCO-EXTRACELLULAR"] 0 [] {} 0 "G7760-MONOMER" "putative uncharacterized protein YrhA" ["YrhA"] "MMTKTQINKLIKMMNDLDYPFEAPLKESFIESIIQIEFNSNSTNCLEKLCNEVSILFKNQPDYLTFLRAMDGFEVNGLRLFSLSIPEPSVKNLFAVNEFYRNNDDFINPDLQERLVIGDYSISIFTYDIKSNFFEIRDNIGTENIFSSFSDFSSFLNEIMDSCS" [] ["CCO-MEMBRANE"] 0 [] {} 0 -"G7762-MONOMER" "IS1 protein InsB" ["InsB1"] "MPGNSPHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"G7762-MONOMER" "IS1 family protein InsB" ["InsB1"] "MPGNSPHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7763-MONOMER" "putative heat shock chaperone" ["YrhB", "putative protein with chaperone-like activity"] "MITYHDAFAKANHYLDDADLPVVITLHGRFSQGWYFCFEAREFLETGDEAARLAGNAPFIIDKDSGEIHSLGTAKPLEEYLQDYEIKKATFGLP" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7767-MONOMER" "periplasmic bacteriophage sensitivity protein DcrB" ["YhhR", "DcrB", "periplasmic protein involved in bacteriophage sensitivity"] "MRNLVKYVGIGLLVMGLAACDDKDTNATAQGSVAESNATGNPVNLLDGKLSFSLPADMTDQSGKLGTQANNMHVWSDATGQKAVIVIMGDDPKEDLAVLAKRLEDQQRSRDPQLQVVTNKAIELKGHKMQQLDSIISAKGQTAYSSVILGNVGNQLLTMQITLPADDQQKAQTTAENIINTLVIQ" ["CCO-PERI-BAC"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7767-MONOMER" "periplasmic bacteriophage sensitivity protein DcrB" ["YhhR", "DcrB", "periplasmic protein involved in bacteriophage sensitivity"] "MRNLVKYVGIGLLVMGLAACDDKDTNATAQGSVAESNATGNPVNLLDGKLSFSLPADMTDQSGKLGTQANNMHVWSDATGQKAVIVIMGDDPKEDLAVLAKRLEDQQRSRDPQLQVVTNKAIELKGHKMQQLDSIISAKGQTAYSSVILGNVGNQLLTMQITLPADDQQKAQTTAENIINTLVIQ" ["CCO-PERI-BAC"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7769-MONOMER" "CP4-6 prophage; IS5 transposase and trans-activator" ["Trs5-1", "Yi52_1", "InsH1"] "MSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMVEVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRADQMIRQWERSH" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7776-MONOMER" "insertion element IS150 protein InsA" ["InsJ", "IS150 protein InsA"] "MSKPKYPFEKRLEVVNHYFTTDDGYRIISARFGVPRTQVRTWVALYEKHGEKGLIPKPKGVSADPELRIKVVKAVIEQHMSLNQAAAHFMLAGSGSVARWLKVYEERGEAGLRALKIGTKRNIAISVDPEKAASALELSKDRRIEDLERQVRFLETRLMYLKKLKALAHPTKK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7777-MONOMER" "IS150 conserved protein InsB" ["InsK", "DinS"] "MKVLNELRQFYPLDELLRAAEIPRSTFYYHLKALSKPDKYADVKKRISEIYHENRGRYGYRRVTLSLHREGKQINHKAVQRLMGTLSLKAAIKVKRYRSYRGEVGQTAPNVLQRDFKATRPNEKWVTDVTEFAVNGRKLYLSPVIDLFNNEVISYSLSERPVMNMVENMLDQAFKKLNPHEHPVLHSDQGWQYRMRRYQNILKEHGIKQSMSRKGNCLDNAVVECFFGTLKSECFYLDEFSNISELKDAVTEYIEYYNSRRISLKLKGLTPIEYRNQTYMPRV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7790-MONOMER" "DNA-binding transcriptional regulator DgoR" ["DgoR", "YidW"] "MTLNKTDRIVITLGKQIVHGKYVPGSPLPAEAELCEEFATSRNIIREVFRSLMAKRLIEMKRYRGAFVAPRNQWNYLDTDVLQWVLENDYDPRLISAMSEVRNLVEPAIARWAAERATSSDLAQIESALNEMIANNQDREAFNEADIRYHEAVLQSVHNPVLQQLSIAISSLQRAVFERTWMGDEANMPQTLQEHKALFDAIRHQDGDAAEQAALTMIASSTRRLKEIT" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7798-MONOMER" "putative toxin YifN" ["YifO", "YifN"] "MAINFSPKVGEILECNFGNYPVSQNGPFSTTYYDGRIPPEMIKNRLVVVLNGKINGNACIVVPLSTTRDQTS*NVECMLK*PVMLSMTCNSLISRFVGPKPTWYNKSVETD*TEQGLTEGILINVCHMSWLQTYRGRSSSQSMPYRS*" [] [] 0 [] {} 0 -"G7800-MONOMER" "TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase" ["WecF", "Rff", "RffT", "YifM"] "MTVLIHVLGSDIPHHNRTVLRFFNDALAATSEHAREFMVVGKDDGLSDSCPALSVQFFPGKKSLAEAVIAKAKANRQQRFFFHGQFNPTLWLALLSGGIKPSQFFWHIWGADLYELSSGLRYKLFYPLRRLAQKRVGCVFATRGDLSFFAKTHPKVRGELLFFPTRMDPSLNTMANDRQREGKMTILVGNSGDRSNEHIAALRAVHQQFGDTVKVVVPMGYPPNNEAYIEEVRQAGLELFSEENLQILSEKLEFDAYLALLRQCDLGYFIFARQQGIGTLCLLIQAGIPCVLNRENPFWQDMTEQHLPVLFTTDDLNEDIVREAQRQLASVDKNTIAFFSPNYLQGWQRALAIAAREVA" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"G7800-MONOMER" "TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase" ["WecF", "Rff", "RffT", "YifM"] "MTVLIHVLGSDIPHHNRTVLRFFNDALAATSEHAREFMVVGKDDGLSDSCPALSVQFFPGKKSLAEAVIAKAKANRQQRFFFHGQFNPTLWLALLSGGIKPSQFFWHIWGADLYELSSGLRYKLFYPLRRLAQKRVGCVFATRGDLSFFAKTHPKVRGELLFFPTRMDPSLNTMANDRQREGKMTILVGNSGDRSNEHIAALRAVHQQFGDTVKVVVPMGYPPNNEAYIEEVRQAGLELFSEENLQILSEKLEFDAYLALLRQCDLGYFIFARQQGIGTLCLLIQAGIPCVLNRENPFWQDMTEQHLPVLFTTDDLNEDIVREAQRQLASVDKNTIAFFSPNYLQGWQRALAIAAREVA" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7802-MONOMER" "protein YzcX" ["YzcX"] "MVAALFGCQPYLVQRLLAVDNDFAAILKGNGQYAAVDFAVDIAVAIPVVQAFFNGQPELISQAMKFTVVHCCILFLSDGGSIAAWGQGFKVCTSAAAFRHDSSVTGIMMSLCSERFVSSLGRSYTTSFPVSGKHYDQVYRASILTLTELKKTTNKPHCDSA" ["CCO-OUTER-MEM"] [] 0 [] {} 0 "G7804-MONOMER" "putative dienelactone hydrolase" ["YsgA"] "MATTQQSGFAPAASPLASTIVQTPDDAIVAGFTSIPSQGDNMPAYHARPKQSDGPLPVVIVVQEIFGVHEHIRDICRRLALEGYLAIAPELYFREGDPNDFADIPTLLSGLVAKVPDSQVLADLDHVASWASRNGGDVHRLMITGFCWGGRITWLYAAHNPQLKAAVAWYGKLTGDKSLNSPKQPVDIATDLNAPILGLYGGQDNSIPQESVETMRQALRAANAKAEIIVYPDAGHAFNADYRPSYHAASAEDGWQRMLEWFKQYGGKKSL" [] [] 0 [] {} 0 "G7808-MONOMER" "twin arginine protein translocation system - TatB protein" ["YsgB", "MttA2"] "MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQDSLKKVEKASLTNLTPELKASMDELRQAAESMKRSYVANDPEKASDEAHTIHNPVVKDNEAAHEGVTPAAAQTQASSPEQKPETTPEPVVKPAADAEPKTAAPSPSSSDKP" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"G7814-MONOMER" "putative outer membrane porin L" ["YshA", "OmpL"] "MKKINAIILLSSLTSASVFAGAYVENREAYNLASDQGEVMLRVGYNFDMGAGIMLTNTYNFQREDELKHGYNEIEGWYPLFKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFVPWFNLTVRNRYNHNNYSSTDLSGELDNNDTYEIGTYWNFKITDKFSYTFEPHYFMRVNDFNSSNGKDHHWEITNTFRYRINEHWLPYFELRWLDRNVEPYHREQNQIRIGTKYFF" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"G7814-MONOMER" "putative outer membrane porin L" ["YshA", "OmpL"] "MKKINAIILLSSLTSASVFAGAYVENREAYNLASDQGEVMLRVGYNFDMGAGIMLTNTYNFQREDELKHGYNEIEGWYPLFKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFVPWFNLTVRNRYNHNNYSSTDLSGELDNNDTYEIGTYWNFKITDKFSYTFEPHYFMRVNDFNSSNGKDHHWEITNTFRYRINEHWLPYFELRWLDRNVEPYHREQNQIRIGTKYFF" ["CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 0 "G7816-MONOMER" "periplasmic protein CpxP" ["CpxP", "YiiO"] "MRIVTAAVMASTLAVSSLSHAAEVGSGDNWHPGEELTQRSTQSHMFDGISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTAENFDENAVRAQAEKMANEQIARQVEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVTQWQKSSSLKLLSSSNSRSQ" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "G7821-MONOMER" "DNA-binding transcriptional repressor AlsR" ["AlsR", "YjcY", "RpiR"] "MSQSEFDSALPNGIGLAPYLRMKQEGMTENESRIVEWLLKPGNLSCAPAIKDVAEALAVSEAMIVKVSKLLGFSGFRNLRSALEDYFSQSEQVLPSELAFDEAPQDVVNKVFNITLRTIMEGQSIVNVDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVLVVTHSGRTSDVKAAVELAKKNGAKIICITHSYHSPIAKLADYIICSPAPETPLLGRNASARILQLTLLDAFFVSVAQLNIEQANINMQKTGAIVDFFSPGALK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7823-MONOMER" "regulator of diguanylate cyclase RdcB" ["RdcB", "YjcZ"] "MTKTLLDGPGRVLESVYPRFLVDLAQGDDARLPQAHQQQFRERLMQELLSRVQLQTWTNGGMLNAPLSLRLTLVEKLASMLDPGHLALTQIAQHLALLQKMDHRQHSAFPELPQQIAALYEWFSARCRWKEKALTQRGLLVQAGDQSEQIFTRWRAGAYNAWSLPGRCFIVLEELRWGAFGDACRLGSPQAVALLLGDLLEKATQHLAESINAAPTTRHYYHQWFASSTVPTGGEHADFLSWLGKWTTADKQPVCWSVTQRWQTVALGMPRLCSAQRLAGAMLEEIFSVNLA" [] [] 0 [] {} 0 -"G7825-MONOMER" "DUF2238 domain-containing inner membrane protein YjdF" ["YjdF"] "MTRTLKPLILNTSALTLTLILIYTGISAHDKLTWLMEVTPVIIVVQLLLATARRYPLTPLLYTLIFLHAIILMVGGQYTYAKVPVGFEVQEWLGLSRNPYDKLGHFFQGLVPALVAREILVRGMYVRGRKMVAFLVCCVALAISAMYELIEWWAALAMGQGADDFLGTQGDQWDTQSDMFCALLGALTTVIFLARFHCRQLRRFGLITG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7825-MONOMER" "DUF2238 domain-containing inner membrane protein YjdF" ["YjdF"] "MTRTLKPLILNTSALTLTLILIYTGISAHDKLTWLMEVTPVIIVVQLLLATARRYPLTPLLYTLIFLHAIILMVGGQYTYAKVPVGFEVQEWLGLSRNPYDKLGHFFQGLVPALVAREILVRGMYVRGRKMVAFLVCCVALAISAMYELIEWWAALAMGQGADDFLGTQGDQWDTQSDMFCALLGALTTVIFLARFHCRQLRRFGLITG" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7828-MONOMER" "PF06902 family protein YjdI" ["YjdI"] "MDQALLDGGYRCYTGEKIDVYFNTAICQHSGNCVRGNGKLFNLKRKPWIMPDEVDVATVVKVIDTCPSGALKYRHK" [] [] 0 [] {} 0 "G7829-MONOMER" "putative N-acetyltransferase YjdJ" ["YjdJ"] "MEIREGHNKFYINDKQGKQIAEIVFVPTGENLAIIEHTDVDESLKGQGIGKQLVAKVVEKMRREKRKIIPLCPFAKHEFDKTREYDDIRS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7830-MONOMER" "antitoxin of the GhoTS toxin-antitoxin system" ["GhoS", "YjdK"] "MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDIDFDLNIMTVDDYFRQFYK" [] [] 0 [] {} 0 @@ -3147,22 +3147,22 @@ "G7834-MONOMER" "DUF4156 domain-containing lipoprotein YjeI" ["YjeI"] "MHVKYLAGIVGAALLMAGCSSSNELSAAGQSVRIVDEQPGAECQLIGTATGKQSNWLSGQHGEEGGSMRGAANDLRNQAAAMGGNVIYGISSPSQGMLSSFVPTDSQIIGQVYKCPN" [] [] 0 [] {} 0 "G7835-MONOMER" "protein YjeJ" ["YjeJ"] "MAISIKGVNTGVIRKSNNFIALALKIKEPRNKESLFFMSVMELRDLLIALESRLHQKHKLDAAAHLQYEQARDKVIKKMAENIPEILVDELKNADINRRVNTLELTDNQGENLTFVLTLHDGSKCELVVNELQIEMLARAIIHAINNAEMRELALRITSLLDFLPLYDVDCQDNGNLEYDTYSQPEWKHNLFDHYLAVLYRFKDESGKEQFSGAVVKTREATPGKEIEAITRRMLDFSPRLKKLAGVPCQVYVRTVAANNAQPLTQDQCLRALHHLRVQSTSKTAPQAK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7836-MONOMER" "lysine 2,3-aminomutase" ["EpmB", "YjeK"] "MAHIVTLNTPSREDWLTQLADVVTDPDELLRLLNIDAEEKLLAGRSAKKLFALRVPRSFIDRMEKGNPDDPLLRQVLTSQDEFVIAPGFSTDPLEEQHSVVPGLLHKYHNRALLLVKGGCAVNCRYCFRRHFPYAENQGNKRNWQTALEYVAAHPELDEMIFSGGDPLMAKDHELDWLLTQLEAIPHIKRLRIHSRLPIVIPARITEALVECFARSTLQILLVNHINHANEVDETFRQAMAKLRRVGVTLLNQSVLLRDVNDNAQTLANLSNALFDAGVMPYYLHVLDKVQGAAHFMVSDDEARQIMRELLTLVSGYLVPKLAREIGGEPSKTPLDLQLRQQ" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 0 -"G7837-MONOMER" "outer membrane lipoprotein Blc" ["YjeL", "Blc", "outer membrane lipoprotein (lipocalin)"] "MRLLPLVAAATAAFLVVACSSPTPPRGVTVVNNFDAKRYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTGAPTRAALKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSKFIWVQQPGS" [] ["CCO-CYTOSOL", "CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"G7837-MONOMER" "outer membrane lipocalin protein" ["YjeL", "Blc", "outer membrane lipoprotein (lipocalin)"] "MRLLPLVAAATAAFLVVACSSPTPPRGVTVVNNFDAKRYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTGAPTRAALKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSKFIWVQQPGS" [] ["CCO-OUTER-MEM"] 0 [] {} 0 "G7838-MONOMER" "uncharacterized protein YjeN" ["YjeN"] "MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDGKRWGNLPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKRPVTL" [] [] 0 [] {} 0 -"G7839-MONOMER" "DUF2645 domain-containing inner membrane protein YjeO" ["YjeO"] "MSARMFVLCCIWFIVAFLWITITSALDKEWMIDGRGINNVCDVLMYLEEDDTRDVGVIMTLPLFFPFLWFALWRKKRGWFMYATALAIFGYWLWQFFLRYQFCL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7839-MONOMER" "DUF2645 domain-containing inner membrane protein YjeO" ["YjeO"] "MSARMFVLCCIWFIVAFLWITITSALDKEWMIDGRGINNVCDVLMYLEEDDTRDVGVIMTLPLFFPFLWFALWRKKRGWFMYATALAIFGYWLWQFFLRYQFCL" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7840-MONOMER" "miniconductance mechanosensitive channel MscM" ["YjeP", "MscM"] "MRLIITFLMAWCLSWGAYAATAPDSKQITQELEQAKAAKPAQPEVVEALQSALNALEERKGSLERIKQYQQVIDNYPKLSATLRAQLNNMRDEPRSVSPGMSTDALNQEILQVSSQLLDKSRQAQQEQERAREIADSLNQLPQQQTDARRQLNEIERRLGTLTGNTPLNQAQNFALQSDSARLKALVDELELAQLSANNRQELARLRSELAEKESQQLDAYLQALRNQLNSQRQLEAERALESTELLAENSADLPKDIVAQFKINRELSAALNQQAQRMDLVASQQRQAASQTLQVRQALNTLREQSQWLGSSNLLGEALRAQVARLPEMPKPQQLDTEMAQLRVQRLRYEDLLNKQPLLRQIHQADGQPLTAEQNRILEAQLRTQRELLNSLLQGGDTLLLELTKLKVSNGQLEDALKEVNEATHRYLFWTSDVRPMTIAWPLEIAQDLRRLISLDTFSQLGKASVMMLTSKETILPLFGALILVGCSIYSRRYFTRFLERSAAKVGKVTQDHFWLTLRTLFWSILVASPLPVLWMTLGYGLREAWPYPLAVAIGDGVTATVPLLWVVMICATFARPNGLFIAHFGWPRERVSRGMRYYLMSIGLIVPLIMALMMFDNLDDREFSGSLGRLCFILICGALAVVTLSLKKAGIPLYLNKEGSGDNITNHMLWNMMIGAPLVAILASAVGYLATAQALLARLETSVAIWFLLLVVYHVIRRWMLIQRRRLAFDRAKHRRAEMLAQRARGEEEAHHHSSPEGAIEVDESEVDLDAISAQSLRLVRSILMLIALLSVIVLWSEIHSAFGFLENISLWDVTSTVQGVESLEPITLGAVLIAILVFIITTQLVRNLPALLELAILQHLDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEIIVPNKAFITEQFINWSLSDSVTRVVLTIPAPADANSEEVTEILLTAARRCSLVIDNPAPEVFLVDLQQGIQIFELRIYAAEMGHRMPLRHEIHQLILAGFHAHGIDMPFPPFQMRLESLNGKQTGRTLTSAGKGRQAGSL" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 "G7841-MONOMER" "ribosome small subunit-dependent GTPase A" ["YjeQ", "RsgA"] "MSKNKLSKGQQRRVNANHQRRLKTSKEKPDYDDNLFGEPDEGIVISRFGMHADVESADGDVHRCNIRRTIRSLVTGDRVVWRPGKPAAEGVNVKGIVEAVHERTSVLTRPDFYDGVKPIAANIDQIVIVSAILPELSLNIIDRYLVACETLQIEPIIVLNKIDLLDDEGMAFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQKEILTNDISDNSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGFVEFHDYLGLCKYRDCKHDTDPGCAIREAVEEGKIAETRFENYHRILESMAQVKTRKNFSDTDD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 "G7842-MONOMER" "oligoribonuclease" ["YjeR", "Orn"] "MSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHFIKL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"ZN+2": 1} 1 "G7843-MONOMER" "epoxyqueuosine reductase" ["QueG", "YjeS"] "MSEPLDLNQLAQKIKQWGLELGFQQVGITDTDLSESEPKLQAWLDKQYHGEMDWMARHGMLRARPHELLPGTLRVISVRMNYLPANAAFASTLKNPKLGYVSRYALGRDYHKLLRNRLKKLGEMIQQHCVSLNFRPFVDSAPILERPLAEKAGLGWTGKHSLILNREAGSFFFLGELLVDIPLPVDQPVEEGCGKCVACMTICPTGAIVEPYTVDARRCISYLTIELEGAIPEELRPLMGNRIYGCDDCQLICPWNRYSQLTTEEDFSPRKPLHAPELIELFAWSEEKFLKVTEGSAIRRIGHLRWLRNIAVALGNAPWDETILTALESRKGEHPLLDEHIAWAIAQQIERRNACIVEVQLPKKQRLVRVIEKGLPRDA" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 2} 0 -"G7844-MONOMER" "DUF2065 domain-containing protein YjeT" ["YjeT"] "MNSTIWLALALVLVLEGLGPMLYPKAWKKMISAMTNLPDNILRRFGGGLVVAGVVVYYMLRKTIG" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"G7844-MONOMER" "DUF2065 domain-containing protein YjeT" ["YjeT"] "MNSTIWLALALVLVLEGLGPMLYPKAWKKMISAMTNLPDNILRRFGGGLVVAGVVVYYMLRKTIG" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7845-MONOMER" "23S rRNA 2'-O-ribose G2251 methyltransferase" ["RlmB", "YjfH"] "MSEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "G7846-MONOMER" "DUF2170 domain-containing protein YjfI" ["YjfI"] "MTWNPLALATALQTVPEQNIDVTNSENALIIKMNDYGDLQINILFTSRQMIIETFICPVSSISNPDEFNTFLLRNQKMMPLSSVGISSVQQEEYYIVFGALSLKSSLEDILLEITSLVDNALDLAEITEEYSH" [] ["CCO-MEMBRANE"] 0 [] {} 0 "G7847-MONOMER" "PspA family protein YjfJ" ["YjfJ", "putative transcriptional regulator effector protein"] "MGILKSLFTLGKSFISQAEESIEETQGVRMLEQHIRDAKAELDKAGKSRVDLLARVKLSHDKLKDLRERKASLEARALEALSKNVNPSLINEVAEEIARLENLITAEEQVLSNLEVSRDGVEKAVTATAQRIAQFEQQMEVVKATEAMQRAQQAVTTSTVGASSSVSTAAESLKRLQTRQAERQARLDAAAQLEKVADGRDLDEKLAEAGIGGSNKSSAQDVLARLQRQQGE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7848-MONOMER" "DUF2491 domain-containing protein YjfK" ["YjfK"] "MSGFFQRLFGKDNKPAIARGPLGLHLNSGFTLDTLAFRLLEDELLIALPGEEFTVAAVSHIDLGGGSQIFRYYTSGDEFLQINTTGGEDIDDIDDIKLFVYEESYGISKESHWREAINAKAMGAMTLNWQEKRWQRFFNSEEPGNIEPVYMLEKVENQNHAKWEVHNFTMGYQRQVTEDTYEYLLLNGEESFNDLGEPEWLFSRALGVDIPLTSLHIIG" [] [] 0 [] {} 0 -"G7849-MONOMER" "DUF350 domain-containing inner membrane protein YjfL" ["YjfL"] "MHILDSLLAFSAYFFIGVAMVIIFLFIYSKITPHNEWQLIKNNNTAASLAFSGTLLGYVIPLSSAAINAVSIPDYFAWGGIALVIQLLVFAGVRLYMPALSEKIINHNTAAGMFMGTAALAGGIFNAACMTW" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7849-MONOMER" "DUF350 domain-containing inner membrane protein YjfL" ["YjfL"] "MHILDSLLAFSAYFFIGVAMVIIFLFIYSKITPHNEWQLIKNNNTAASLAFSGTLLGYVIPLSSAAINAVSIPDYFAWGGIALVIQLLVFAGVRLYMPALSEKIINHNTAAGMFMGTAALAGGIFNAACMTW" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7850-MONOMER" "DUF1190 domain-containing protein YjfM" ["YjfM"] "MARKRKSRNNSKIGHGAISRIGRPNNPFEPCRNRYAQKYLTLALMGGAAFFVLKGCSDSSDVDNDGDGTFYATVQDCIDDGNNADICARGWNNAKTAFYADVPKNMTQQNCQSKYENCYYDNVEQSWIPVVSGFLLSRVIRKDRDEPFVYNSGGSSFASRPVWRSTSGDYSWRSGSGKKESYSSGGFTTKKASTVSRGGYGRSSSARGHWGG" [] [] 0 [] {} 0 "G7851-MONOMER" "protease activator YjfN" ["YjfN"] "MKQLLASPSLQLVTYPASATAQSAEFASADCVTGLNEIGQISVSNISGDPQDVERIVALKADEQGASWYRIITMYEDQQPDNWRVQAILYA" [] ["CCO-PERI-BAC"] 0 [] {} 0 -"G7852-MONOMER" "DUF1471 domain-containing putative lipoprotein BsmA" ["YjfO", "BsmA"] "MVSRKRNSVIYRFASLLLVLMLSACSALQGTPQPAPPVTDHPQEIRRDQTQGLQRIGSVSTMVRGSPDDALAEIKAKAVAAKADYYVVVMVDETIVTGQWYSQAILYRK" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 0 +"G7852-MONOMER" "DUF1471 domain-containing putative lipoprotein BsmA" ["YjfO", "BsmA"] "MVSRKRNSVIYRFASLLLVLMLSACSALQGTPQPAPPVTDHPQEIRRDQTQGLQRIGSVSTMVRGSPDDALAEIKAKAVAAKADYYVVVMVDETIVTGQWYSQAILYRK" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 0 "G7853-MONOMER" "carboxylesterase" ["YjfP"] "MIEIESRELADIPVLHAYPVGQKDTPLPCVIFYHGFTSSSLVYSYFAVALAQAGLRVIMPDAPDHGSRFSGDAARRLNQFWQILLQSMQEFTTLRAAIAEENWLLDDRLAVGGASMGAMTALGITARHPTVRCTASMMGSGYFTSLARSLFPPLIPETAAQQNEFNNIVAPLAEWEATNHLEQLSDRPLLLWHGLDDDVVPADESLRLQQALSETGRDKLLTCSWQPGVRHRITPEALDAAVTFFRQHL" [] [] 0 [] {} 1 "G7854-MONOMER" "DNA-binding transcriptional repressor UlaR" ["UlaR", "YjfQ"] "MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLDESGKLKKVRNGAEAITQQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVINCGSTAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSENSLYAGHWMFTSGKGLTAEGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGKNANPEILQQLEAQGVSILRV" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7855-MONOMER" "L-ascorbate-6-phosphate lactonase" ["YjfR", "UlaG"] "MSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLGCTGIWLKSEGGTNVCVDFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTTPFVLDPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKVVIPFHHDIWSNFQADPQEIRVLWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHYPRGFDDCFTIEPDLPFKSFL" [] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -3172,18 +3172,18 @@ "G7861-MONOMER" "DUF1471 domain-containing protein YjfY" ["YjfY"] "MFSRVLALLAVLLLSANTWAAIEINNHQARNMDDVQSLGVIYINHNFATESEARQALNEETDAQGATYYHVILMREPGSNGNMHASADIYR" [] ["CCO-PERI-BAC", "CCO-CYTOSOL"] 0 [] {} 0 "G7862-MONOMER" "DUF2686 domain-containing protein YjfZ" ["YjfZ"] "MTLPTTIYSFPAYLSRFSSTDKPVKLKFHQYARATLLSNRGRDHNCDGRRTVEIHKLDLSDWQAFNKLATRCNAYDGITMNGDNSFGWNHEATLDNIHAQKYNKAYAGARLTAELKYLLQDVESFEPNSKYTIHEVVLGPGYGTPDYTGQTIGYVVTLPAQMPNCWSSELPTIDLYIDQLRTVTGVSNALGFIIAALLNAYSDLPHDLKIGLRSLSSSAAIYSGLGFERVPQERDISCARMYLTPANHPDLWTQENGEWIYLRN" [] ["CCO-MEMBRANE"] 0 [] {} 0 "G7863-MONOMER" "putative transcriptional regulator YtfA" ["YtfA"] "MQKAIEKIIDFTWDYYIANPWFLKIVHSENQSKGVHYAKSQRLLEINHAHLQLMESLLDEGKKHNIFKPDIDPLQVNINIAALGGYYLINQHTLGLVYHISMVSPQALEARRKVIKETILSWLLVDPSSTAHE" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7864-MONOMER" "cell division protein YtfB" ["YtfB"] "MPGRFELKPTLEKVWHAPDNFRFMDPLPPMHRRGIIIAAIVLVVGFLLPSDDTPNAPVVTREAQLDIQSQSQPPTEEQLRAQLVTPQNDPDQVAPVAPEPIQEGQPEEQPQTTQTQPFQPDSGIDNQWRSYRVEPGKTMAQLFRDHGLPATDVYAMAQVEGAGKPLSNLQNGQMVKIRQNASGVVTGLTIDTGNNQQVLFTRQPDGSFIRAR" [] ["CCO-EXTRACELLULAR", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"G7864-MONOMER" "cell division protein YtfB" ["YtfB"] "MPGRFELKPTLEKVWHAPDNFRFMDPLPPMHRRGIIIAAIVLVVGFLLPSDDTPNAPVVTREAQLDIQSQSQPPTEEQLRAQLVTPQNDPDQVAPVAPEPIQEGQPEEQPQTTQTQPFQPDSGIDNQWRSYRVEPGKTMAQLFRDHGLPATDVYAMAQVEGAGKPLSNLQNGQMVKIRQNASGVVTGLTIDTGNNQQVLFTRQPDGSFIRAR" [] ["CCO-EXTRACELLULAR", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7865-MONOMER" "peptidyl-prolyl cis-trans isomerase FklB" ["YtfC", "FklB", "FKBP22", "FKBP-type peptidyl-prolyl cis-trans isomerase FklB"] "MTTPTFDTIEAQASYGIGLQVGQQLSESGLEGLLPEALVAGIADALEGKHPAVPVDVVHRALREIHERADAVRRQRFQAMAAEGVKYLEENAKKEGVNSTESGLQFRVINQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNGVIPGWIEALTLMPVGSKWELTIPQELAYGERGAGASIPPFSTLVFEVELLEIL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL", "CCO-PERI-BAC"] 1 [] {} 1 -"G7866-MONOMER" "iron-sulfur cluster repair protein YtfE" ["YtfE", "DnrN", "RIC", "protein involved in repair of stress-damaged iron-sulfur clusters", "high-affinity, low-capacity nitrite reductase"] "MAYRDQPLGELALSIPRASALFRKYDMDYCCGGKQTLARAAARKELDVEVIEAELAKLAEQPIEKDWRSAPLAEIIDHIIVRYHDRHREQLPELILQATKVERVHADKPSVPKGLTKYLTMLHEELSSHMMKEEQILFPMIKQGMGSQAMGPISVMESEHDEAGELLEVIKHTTNNVTPPPEACTTWKAMYNGINELIDDLMDHISLENNVLFPRALAGE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 +"G7866-MONOMER" "[Fe-S] cluster repair protein YtfE" ["YtfE", "DnrN", "RIC", "protein involved in repair of stress-damaged iron-sulfur clusters", "high-affinity, low-capacity nitrite reductase", "iron-sulfur cluster repair protein YtfE"] "MAYRDQPLGELALSIPRASALFRKYDMDYCCGGKQTLARAAARKELDVEVIEAELAKLAEQPIEKDWRSAPLAEIIDHIIVRYHDRHREQLPELILQATKVERVHADKPSVPKGLTKYLTMLHEELSSHMMKEEQILFPMIKQGMGSQAMGPISVMESEHDEAGELLEVIKHTTNNVTPPPEACTTWKAMYNGINELIDDLMDHISLENNVLFPRALAGE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G7867-MONOMER" "inner membrane protein YtfF" ["YtfF"] "MISGVLYALLAGLMWGLIFVGPLIVPEYPAMLQSMGRYLALGLIALPIAWLGRVRLRQLARRDWLTALMLTMMGNLIYYFCLASAIQRTGAPVSTMIIGTLPVVIPVFANLLYSQRDGKLAWGKLAPALICIGIGLACVNIAELNHGLPDFDWARYTSGIVLALVSVVCWAWYALRNARWLRENPDKHPMMWATAQALVTLPVSLIGYLVACYWLNTQTPDFSLPFGPRPLVFISLMVAIAVLCSWVGALCWNVASQLLPTVILGPLIVFETLAGLLYTFLLRQQMPPLMTLSGIALLVIGVVIAVRAKPEKPLTESVSES" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7868-MONOMER" "NAD(P)H:quinone oxidoreductase" ["QorB", "YtfG", "QOR2"] "MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAGVKFIAYTSLLHADTSPLGLADEHIETEKMLADSGIVYTLLRNGWYSENYLASAPAALEHGVFIGAAGDGKIASATRADYAAAAARVISEAGHEGKVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFDDSKTLSKLIGHPTTTLAESVSHLFNVNN" ["CCO-CYTOSOL"] [] 0 [] {} 0 "G7869-MONOMER" "putative transcriptional regulator YtfH" ["YtfH"] "MSQVSLSQQLKEGNLFAEQCPSREVLKHVTSRWGVLILVALREGTHRFSDLRRKIGGVSEKMLAQSLQALEQDGFLNRIAYPVVPPHVEYSLTPLGEQVSEKVAALADWIELNLPEVLAVRDERAA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7870-MONOMER" "protein YtfI" ["YtfI"] "MLPRIRHNNFIGAVELFVKSSYTKTHSNNFFNNIHHAFKKKDWISNYDSLLTLREFFRCATQIDKSGYQVLSSKNETVHAMDKFLISFSLKDNGAEYTMTLRGSGFEYEEIPITINEYNSFMDFKNREFPLEQNRRLYAWDILQKKQSDIPKRIKGYIHQAIGDVSLGYALLEDIVSKLKRGKFELQIPGGGIKECDGWYIYEKIIDDNFAIVIESLGFALKIYGGDERFRNGSSVVLEDEDYSLIYNFLVNAGCQQVELAEQVDAIVSANLAADSDITKEKICEKYKSTIEAFKKEQLALPVLVRRKNSET" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7871-MONOMER" "PF09695 family protein YtfJ" ["EcfJ", "YtfJ"] "MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLLK" [] ["CCO-PERI-BAC"] 0 [] {} 0 "G7872-MONOMER" "stringent response modulator YtfK" ["YtfK", "DUF1107 domain-containing protein YtfK"] "MKIFQRYNPLQVAKYVKILFRGRLYIKDVGAFEFDKGKILIPKVKDKLHLSVMSEVNRQVMRLQTEMA" [] [] 0 [] {} 0 -"G7873-MONOMER" "putative cadaverine/putrescine exporter" ["PaeA", "YtfL"] "MLNSILVILCLIAVSAFFSMSEISLAASRKIKLKLLADEGNINAQRVLNMQENPGMFFTVVQIGLNAVAILGGIVGDAAFSPAFHSLFSRYMSAELSEQLSFILSFSLVTGMFILFADLTPKRIGMIAPEAVALRIINPMRFCLYVCTPLVWFFNGLANIIFRIFKLPMVRKDDITSDDIYAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTPRENVIWFDLHEDEQSLKNKVAEHPHSKFLVCNEDIDHIIGYVDSKDLLNRVLANQSLALNSGVQIRNTLIVPDTLTLSEALESFKTAGEDFAVIMNEYALVVGIITLNDVMTTLMGDLVGQGLEEQIVARDENSWLIDGGTPIDDVMRVLDIDEFPQSGNYETIGGFMMFMLRKIPKRTDSVKFAGYKFEVVDIDNYRIDQLLVTRIDSKATALSPKLPDAKDKEESVA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7873-MONOMER" "putative cadaverine/putrescine exporter" ["PaeA", "YtfL"] "MLNSILVILCLIAVSAFFSMSEISLAASRKIKLKLLADEGNINAQRVLNMQENPGMFFTVVQIGLNAVAILGGIVGDAAFSPAFHSLFSRYMSAELSEQLSFILSFSLVTGMFILFADLTPKRIGMIAPEAVALRIINPMRFCLYVCTPLVWFFNGLANIIFRIFKLPMVRKDDITSDDIYAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTPRENVIWFDLHEDEQSLKNKVAEHPHSKFLVCNEDIDHIIGYVDSKDLLNRVLANQSLALNSGVQIRNTLIVPDTLTLSEALESFKTAGEDFAVIMNEYALVVGIITLNDVMTTLMGDLVGQGLEEQIVARDENSWLIDGGTPIDDVMRVLDIDEFPQSGNYETIGGFMMFMLRKIPKRTDSVKFAGYKFEVVDIDNYRIDQLLVTRIDSKATALSPKLPDAKDKEESVA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7874-MONOMER" "translocation and assembly module subunit TamA" ["TamA", "YtfM"] "MRYIRQLCCVSLLCLSGSAVAANVRLQVEGLSGQLEKNVRAQLSTIESDEVTPDRRFRARVDDAIREGLKALGYYQPTIEFDLRPPPKKGRQVLIAKVTPGVPVLIGGTDVVLRGGARTDKDYLKLLDTRPAIGTVLNQGDYENFKKSLTSIALRKGYFDSEFTKAQLGIALGLHKAFWDIDYNSGERYRFGHVTFEGSQIRDEYLQNLVPFKEGDEYESKDLAELNRRLSATGWFNSVVVAPQFDKARETKVLPLTGVVSPRTENTIETGVGYSTDVGPRVKATWKKPWMNSYGHSLTTSTSISAPEQTLDFSYKMPLLKNPLEQYYLVQGGFKRTDLNDTESDSTTLVASRYWDLSSGWQRAINLRWSLDHFTQGEITNTTMLFYPGVMISRTRSRGGLMPTWGDSQRYSIDYSNTAWGSDVDFSVFQAQNVWIRTLYDRHRFVTRGTLGWIETGDFDKVPPDLRFFAGGDRSIRGYKYKSIAPKYANGDLKGASKLITGSLEYQYNVTGKWWGAVFVDSGEAVSDIRRSDFKTGTGVGVRWESPVGPIKLDFAVPVADKDEHGLQFYIGLGPEL" ["CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 -"G7875-MONOMER" "translocation and assembly module subunit TamB" ["TamB", "YtfO", "YtfN"] "MSLWKKISLGVVIVILLLLGSVAFLVGTTSGLHLVFKAADRWVPGLDIGKVTGGWRDLTLSDVRYEQPGVAVKAGNLHLAVGLECLWNSSVCINDLALKDIQVNIDSKKMPPSEQVEEEEDSGPLDLSTPYPITLTRVALDNVNIKIDDTTVSVMDFTSGLNWQEKTLTLKPTSLKGLLIALPKVAEVAQEEVVEPKIENPQPDEKPLGETLKDLFSRPVLPEMTDVHLPLNLNIEEFKGEQLRVTGDTDITVSTMLLKVSSIDGNTKLDALDIDSSQGIVNASGTAQLSDNWPVDITLNSTLNVEPLKGEKVKLKMGGALREQLEIGVNLSGPVDMDLRAQTRLAEAGLPLNVEVNSKQLYWPFTGEKQYQADDLKLKLTGKMTDYTLSMRTAVKGQEIPPATITLDAKGNEQQVNLDKLTVAALEGKTELKALLDWQQAISWRGELTLNGINTAKEFPDWPSKLNGLIKTRGSLYGGTWQMDVPELKLTGNVKQNKVNVDGTLKGNSYMQWMIPGLHLELGPNSAEVKGELGVKDLNLDATINAPGLDNALPGLGGTAKGLVKVRGTVEAPQLLADITARGLRWQELSVAQVRVEGDIKSTDQIAGKLDVRVEQISQPDVNINLVTLNAKGSEKQHELQLRIQGEPVSGQLNLAGSFDRKEERWKGTLSNTRFQTPVGPWSLTRDIALDYRNKEQKISIGPHCWLNPNAELCVPQTIDAGAEGRAVVNLNRFDLAMLKPFMPETTQASGIFTGKADVAWDTTKEGLPQGSITLSGRNVQVTQTVNDAALPVAFQTLNLTAELRNNRAELGWTIRLTNNGQFDGQVQVTDPQGRRNLGGNVNIRNFNLAMINPIFTRGEKAAGMVSANLRLGGDVQSPQLFGQLQVTGVDIDGNFMPFDMQPSQLAVNFNGMRSTLAGTVRTQQGEIYLNGDADWSQIENWRARVTAKGSKVRITVPPMVRMDVSPDVVFEATPNLFTLDGRVDVPWARIVVHDLPESAVGVSSDVVMLNDNLQPEEPKTASIPINSNLIVHVGNNVRIDAFGLKARLTGDLNVVQDKQGLGLNGQINIPEGRFHAYGQDLIVRKGELLFSGPPDQPYLNIEAIRNPDATEDDVIAGVRVTGLADEPKAEIFSDPAMSQQAALSYLLRGQGLESDQSDSAAMTSMLIGLGVAQSGQIVGKIGETFGVSNLALDTQGVGDSSQVVVSGYVLPGLQVKYGVGIFDSIATLTLRYRLMPKLYLEAVSGVDQALDLLYQFEF" ["CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] 0 [] {} 1 +"G7875-MONOMER" "translocation and assembly module subunit TamB" ["TamB", "YtfO", "YtfN"] "MSLWKKISLGVVIVILLLLGSVAFLVGTTSGLHLVFKAADRWVPGLDIGKVTGGWRDLTLSDVRYEQPGVAVKAGNLHLAVGLECLWNSSVCINDLALKDIQVNIDSKKMPPSEQVEEEEDSGPLDLSTPYPITLTRVALDNVNIKIDDTTVSVMDFTSGLNWQEKTLTLKPTSLKGLLIALPKVAEVAQEEVVEPKIENPQPDEKPLGETLKDLFSRPVLPEMTDVHLPLNLNIEEFKGEQLRVTGDTDITVSTMLLKVSSIDGNTKLDALDIDSSQGIVNASGTAQLSDNWPVDITLNSTLNVEPLKGEKVKLKMGGALREQLEIGVNLSGPVDMDLRAQTRLAEAGLPLNVEVNSKQLYWPFTGEKQYQADDLKLKLTGKMTDYTLSMRTAVKGQEIPPATITLDAKGNEQQVNLDKLTVAALEGKTELKALLDWQQAISWRGELTLNGINTAKEFPDWPSKLNGLIKTRGSLYGGTWQMDVPELKLTGNVKQNKVNVDGTLKGNSYMQWMIPGLHLELGPNSAEVKGELGVKDLNLDATINAPGLDNALPGLGGTAKGLVKVRGTVEAPQLLADITARGLRWQELSVAQVRVEGDIKSTDQIAGKLDVRVEQISQPDVNINLVTLNAKGSEKQHELQLRIQGEPVSGQLNLAGSFDRKEERWKGTLSNTRFQTPVGPWSLTRDIALDYRNKEQKISIGPHCWLNPNAELCVPQTIDAGAEGRAVVNLNRFDLAMLKPFMPETTQASGIFTGKADVAWDTTKEGLPQGSITLSGRNVQVTQTVNDAALPVAFQTLNLTAELRNNRAELGWTIRLTNNGQFDGQVQVTDPQGRRNLGGNVNIRNFNLAMINPIFTRGEKAAGMVSANLRLGGDVQSPQLFGQLQVTGVDIDGNFMPFDMQPSQLAVNFNGMRSTLAGTVRTQQGEIYLNGDADWSQIENWRARVTAKGSKVRITVPPMVRMDVSPDVVFEATPNLFTLDGRVDVPWARIVVHDLPESAVGVSSDVVMLNDNLQPEEPKTASIPINSNLIVHVGNNVRIDAFGLKARLTGDLNVVQDKQGLGLNGQINIPEGRFHAYGQDLIVRKGELLFSGPPDQPYLNIEAIRNPDATEDDVIAGVRVTGLADEPKAEIFSDPAMSQQAALSYLLRGQGLESDQSDSAAMTSMLIGLGVAQSGQIVGKIGETFGVSNLALDTQGVGDSSQVVVSGYVLPGLQVKYGVGIFDSIATLTLRYRLMPKLYLEAVSGVDQALDLLYQFEF" ["CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] ["CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] 0 [] {} 1 "G7876-MONOMER" "γ-glutamylamine cyclotransferase family protein YtfP" ["YtfP"] "MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSLGHYPGAVPGNGTVHGEVYRIDNATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVDGLKLIESGDWLDRDK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "G7877-MONOMER" "enamine/imine deaminase, redox-regulated chaperone" ["RidA", "YjgF"] "MSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPADVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVARLPKDVKIEIEAIAVRR" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "G7879-MONOMER" "RutC family protein YjgH" ["YjgH"] "MVERTAVFPAGRHSLYAEHRYSAAIRSGDLLFVSGQVGSREDGTPEPDFQQQVRLAFDNLHATLAAAGCTFDDIIDVTSFHTDPENQFEDIMTVKNEIFSAPPYPNWTAVGVTWLAGFDFEIKVIARIPEQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -3193,17 +3193,17 @@ "G7884-MONOMER" "protein YjgL" ["YjgL"] "MSKISDLNYSQHITLADNFKQKSEVLNTWRVGMNDFARIAGGQDNRRNILSPGAFLEFLAKIFTLGYVDFSKRSNEAGRNMMAHIKSSSYSKDTNGNEKMKFYMNNPVGERADSPKVIIEISLSTITTMGTRQGHTAIIFPQPDGSTNRYEGKSFERKDESSLHLITNKVLACYQSEANKKIARLLNNNQELNNLQKLNNLQKLNNLLKLNNIQGLNNPQELNNPQNLNDSQELNNSQELNSPQELNDPQELNNSQDLNNSKVSCTVSVDSTITGLLKEPLNNALLAIRNEHLLLMPHVCDESISYLLGEKGILEEIDKLYALNDHGIDNDKVGNNEINDIKVNLSHILIDSLDDAKVNLTPVIDSILETFSKSPYINDVRILDWCFNKSMQYFDDTKKIKHACSVINHINLRSDQSKIAETLFFNLDKEPYKNSPELQGLIWNKLVVYVNEFNLSNREKTNLIQRLFDNVESIFNEVPVSILVNDIFMNDFFMKNPEMINWYFPQLLKSYEGEKIYFDNLKYDLNDNDKESNKEILKNQPDNVIKEKLNNEYKLRFRMMQTILQSRVNVLPYINEQRLNKLNPPENLRIAIEHFGWKNRPITA" [] ["CCO-CYTOSOL", "CCO-OUTER-MEM"] 0 [] {} 0 "G7885-MONOMER" "ribonuclease E inhibitor protein B" ["YjgD", "RraB"] "MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "G7886-MONOMER" "putative N-acetyltransferase YjgM" ["YjgM"] "MNNIAPQSPVMRRLTLQDNPAIARVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLTGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLREL" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7887-MONOMER" "inner membrane protein YjgN" ["YjgN"] "MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFVSCLFFVFFYFAILMTVSADMPLVGCVLTLLLLVLLIFMAAKGLRHQALMTSLNGVRFSFNCSMKGFWWVTFFLPILMAIGMGTVFFISTKMLPANSSSSVIISMVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTTYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRLTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGVMPSLPFL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7887-MONOMER" "inner membrane protein YjgN" ["YjgN"] "MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFVSCLFFVFFYFAILMTVSADMPLVGCVLTLLLLVLLIFMAAKGLRHQALMTSLNGVRFSFNCSMKGFWWVTFFLPILMAIGMGTVFFISTKMLPANSSSSVIISMVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTTYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRLTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGVMPSLPFL" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7888-MONOMER" "lipopolysaccharide transport system protein LptF" ["YjgP"] "MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "G7889-MONOMER" "lipopolysaccharide transport system protein LptG" ["YjgQ"] "MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "G7890-MONOMER" "DUF853 domain-containing protein YjgR" ["YjgR"] "MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAQAGTVSEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDEVDRESAYEMLQKGFQASTEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR" [] [] 0 [] {} 0 "G7891-MONOMER" "DNA-binding transcriptional dual regulator IdnR" ["GntH", "YjgS", "IdnR"] "MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSEHNYQTLIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLEKRVRHKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G7898-MONOMER" "KpLE2 phage-like element; putative phosphoethanolamine transferase YjgX, N-terminal fragment" ["YjgX", "YjgY"] "MNRPVFPVYHFLVSAAILVFVVIFWRTHHRDHRNWLALRLFVLCSVNRWPLRMVKGTVVGTTDTLREMQRYEQLSSTGLTTGKSSREHRYMIRLLLSLVRVCAGIICQCMTIPYQPHRG*IRHPVYLLTIIPRQPPVQCLP*AGH*FMTMSRTLIPATMWWRWQQKQDTAHGGYPIKENWGSMTHASLLLLLMRSMPLSSRKAASLPVKQMTNCCYRKQNVRWRIHPLRR*FSCT*WVLIQIRVTALTPSRIITWSSIPEKLPVTSPASVNWITFLASLMVSFAGTHVISPCFTFLALGCRSATVPILFIIMVMCREATVCH*LLPPVT*RLISPSVEKSVPVISQVFFSG*PVFVLKIYRHSIR*QTKITNLLWFLRERGIYRQTV*NLSHLFFLIT" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7898-MONOMER" "KpLE2 phage-like element; putative phosphoethanolamine transferase YjgX, N-terminal fragment" ["YjgX", "YjgY"] "MNRPVFPVYHFLVSAAILVFVVIFWRTHHRDHRNWLALRLFVLCSVNRWPLRMVKGTVVGTTDTLREMQRYEQLSSTGLTTGKSSREHRYMIRLLLSLVRVCAGIICQCMTIPYQPHRG*IRHPVYLLTIIPRQPPVQCLP*AGH*FMTMSRTLIPATMWWRWQQKQDTAHGGYPIKENWGSMTHASLLLLLMRSMPLSSRKAASLPVKQMTNCCYRKQNVRWRIHPLRR*FSCT*WVLIQIRVTALTPSRIITWSSIPEKLPVTSPASVNWITFLASLMVSFAGTHVISPCFTFLALGCRSATVPILFIIMVMCREATVCH*LLPPVT*RLISPSVEKSVPVISQVFFSG*PVFVLKIYRHSIR*QTKITNLLWFLRERGIYRQTV*NLSHLFFLIT" [] [] 0 [] {} 0 "G7899-MONOMER" "KpLE2 phage-like element; uncharacterized protein YjgZ" ["YjgZ"] "MLPPGPLLVLPVGARVSRGGLSPTERSCISRHTQQYLRACYPSGRYGTKGLVVRWFTGGREPRGTDNEPSGNRSLEPHAWLTDVLTRLPEWPEERLAELLPLEGFTFFG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7900-MONOMER" "KpLE2 phage-like element; IS4 putative transposase" ["InsG"] "MHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQARQRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTHAGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGYYSLGLLNAWSLAGEHRHWMIPLRKGAQYEEIRKLGKGDHLVKLKTSPQARKKWPGLGNEVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMGDLYSHRWEIELGYREIKQTMQRSRLTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELMRDLASMGQLVKLPTRRERAFPRVVKERPWKYPTAPKKSQSVA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7901-MONOMER" "KpLE2 phage-like element; 2,7-anhydro-N-acetylneuraminate hydratase" ["NanY", "YjhC", "KpLE2 phage-like element; putative sialic acid oxidoreductase YjhC", "KpLE2 phage-like element; N-acetylneuraminate dehydratase"] "MINYGVVGVGYFGAELARFMNMHDNAKITCVYDPENGENIARELQCINMSSLDALVSSKLVDCVIVATPNYLHKEPVIKAAKNKKHVFCEKPIALSYEDCVDMVKACKEAGVTFMAGHIMNFFNGVQYARKLIKEGVIGEILSCHTKRNGWENKQERLSWKKMKEQSGGHLYHHIHELDCVQHLLGEIPETVTMIGGNLAHSGPGFGNEDDMLFMTLEFPSGKLATLEWGSAFNWPEHYVIINGTKGSIKIDMQETAGSLRIGGQTKHFLVHETQEEDDDRRKGNMTSEMDGAIAYGHPGKKTPLWLASLIRKETLFLHNILCGAKPEEDYIDLLNGEAAMSAIATADAATLSRSQDRKVKISEIIKHTSVM" [] [] 0 [] {} 1 "G7902-MONOMER" "KpLE2 phage-like element; surface adhesin E-like protein" ["YjhD"] "MNCETKQRTQFECIYFSQYWAKGDFIAKRAPIGQWEPYSEESLLGIIVTSVCRIKVAMLKPEPPRDPHIPLMGDFN" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7903-MONOMER" "KpLE2 phage-like element; putative membrane protein (pseudogene)" ["YjhE"] "MLADELTIGPIRAVPMDITPKYVGIASGLMNAGSAVADIISPIAFGIIIDKTGNWSLPFYGSVALLVIGIFLTFFMRPDKSL" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"G7903-MONOMER" "KpLE2 phage-like element; putative membrane protein (pseudogene)" ["YjhE"] "MLADELTIGPIRAVPMDITPKYVGIASGLMNAGSAVADIISPIAFGIIIDKTGNWSLPFYGSVALLVIGIFLTFFMRPDKSL" [] ["CCO-MEMBRANE"] 0 [] {} 0 "G7904-MONOMER" "KpLE2 phage-like element; IS911B regulator fragment" ["YjhW", "InsO", "InsN2"] "MKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRKLRKKLQRIEMENEILKKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPVGVMFQSDQGSHYTSRQFRQLLWRYRIRQSMSRRGNCWDNSPMERFFRSLKNEWVPATGYVSFSDAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNAEASFS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7907-MONOMER" "KpLE2 phage-like element; putative uncharacterized protein YjhV" ["YjhV"] "MPEGSRGRLAVAVAGDHPAAVQVTMTLVNDTGFDPVFSGSIAESWRQQPCTPSYCCDWEAATMLRAFPLAKKGEGRARLPSLYASFGKLGETPTHEDIIDNNRSINWPV" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7908-MONOMER" "KpLE2 phage-like element; IS1 repressor protein InsA" ["InsA7"] "MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSPCRKTWQLQFTYTASQPGKHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -3218,20 +3218,20 @@ "G7917-MONOMER" "KpLE2 phage-like element; putative acetyltransferase TopAI antitoxin YjhQ" ["YjhQ", "KpLE2 phage-like element; antitoxin of the TopAI-YjhQ toxin-antitoxin system; putative acetyltransferase"] "MTVHHFTFHITDKSDASDIREVETRAFGFSKEADLVASLLEDESARPALSLLARYEGKAVGHILFTRATFKGEMDSPLMHILAPLAVIPEYQGMGVGGRLIRTGIEHLRLMGCQTVFVLGHATYYPRHGFEPCAGDKGYPAPYPIPEEHKACWMMQSLTAQPMTLTGHIRCADPDETGALT" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7918-MONOMER" "KpLE2 phage-like element; PLD-like domain-containing protein YjhR" ["YjhR", "KpLE2 phage-like element; putative frameshift suppressor"] "MGYLHIDGRGMKPNGGSRHNPLEAETIAAWLVAHKDDIERHYGEPLYKVVGVVTPFSAQVNAIKMSLRKLEINGKDEQGLLTVGTVHSLQGAERAIVLFSPVYSKHEDGRFLDSNSTILNVAVSRAKDSFLVFGDMDLIEMQPAFSPRGLLAKYLFSSDNNALQFEFQKRQDLISAHTQISTLHGVEQHDEFLNKTLAGAQKKITIISPWLSWQKVEQTGFLASMALARSRGIDITVVTDKNCNIAHVDDDKRQEKQHLLNDAVEKLNKMGIATKLVNRVHSKIVIEDEELLCVGSFNWFSATREDKYQRYDTSLVYRGEGVKNEIKAIYGSLDQRQL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7919-MONOMER" "N-acetyl-9-O-acetylneuraminate esterase" ["YjhS", "NanS"] "MNAIISPDYYYVLTVAGQSNAMAYGEGLPLPDREDAPHPRIKQLARFAHTHPGGPPCHFNDIIPLTHCPHDVQDMQGYHHPLATNHQTQYGTVGQALHIARKLLPFIPDNAGILIVPCCRGGSAFTAGSEGTYSERHGASHDACRWGTDTPLYQDLVSRTRAALAKNPQNKFLGACWMQGEFDLMTSDYASHPQHFNHMVEAFRRDLKQYHSQLNNITDAPWFCGDTTWYWKENFPHSYEAIYGNYQNNVLANIIFVDFQQQGERGLTNAPDEDPDDLSTGYYGSAYRSPENWTTALRSSHFSTAARRGIISDRFVEAILQFWRER" [] ["CCO-PERI-BAC"] 0 [] {} 0 -"G7920-MONOMER" "N-acetylneuraminate mutarotase" ["YjhT", "NanM"] "MNKTITALAIMMASFAANASVLPETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN" ["CCO-PERI-BAC"] ["CCO-CYTOSOL", "CCO-PERI-BAC"] 0 [] {} 1 -"G7921-MONOMER" "N-acetylneuraminate outer membrane channel" ["NanC", "YjhA"] "MKKAKILSGVLLLCFSSPLISQAATLDVRGGYRSGSHAYETRLKVSEGWQNGWWASMESNTWNTIHDNKKENAALNDVQVEVNYAIKLDDQWTVRPGMLTHFSSNGTRYGPYVKLSWDATKDLNFGIRYRYDWKAYRQQDLSGDMSRDNVHRWDGYVTYHINSDFTFAWQTTLYSKQNDYRYANHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGVYNGRDNLSENSYRIGVSFKL" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"G7920-MONOMER" "N-acetylneuraminate mutarotase" ["YjhT", "NanM"] "MNKTITALAIMMASFAANASVLPETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 +"G7921-MONOMER" "N-acetylneuraminate outer membrane channel" ["NanC", "YjhA"] "MKKAKILSGVLLLCFSSPLISQAATLDVRGGYRSGSHAYETRLKVSEGWQNGWWASMESNTWNTIHDNKKENAALNDVQVEVNYAIKLDDQWTVRPGMLTHFSSNGTRYGPYVKLSWDATKDLNFGIRYRYDWKAYRQQDLSGDMSRDNVHRWDGYVTYHINSDFTFAWQTTLYSKQNDYRYANHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGVYNGRDNLSENSYRIGVSFKL" [] ["CCO-OUTER-MEM"] 0 [] {} 0 "G7922-MONOMER" "DUF2686 domain-containing protein YjiC" ["YjiC"] "MSMPLSNALQSQIITDAHFLHHPIVDSEFTRKLKYARMDSENIYLPPLTRGNNHNYDGKSVVEIRKLDISKEPWPFNYVTGACRESDGITTTGRMLYRNLKITSALDEIYGGICKKAHATTELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGCNVPGYAGTTIGYISTLPASQAKRWTNEQPRIDIYIDQIMTVTGVANSSGFALAALLNANIELGNDPIIGIEAYPGTAEIHAKMGYKVIPGDENAPLKRMTLQPSSLPELFELKNGEWNYIGK" [] [] 0 [] {} 0 "G7923-MONOMER" "anti-adaptor protein IraD" ["YjiD", "IraD", "anti-adaptor protein IraD inhibitor of σS proteolysis"] "MMRQSLQAVLPEISGNKTSSLRKSVCSDLLTLFNSPHSALPSLLVSGMPEWQVHNPSDKHLQSWYCRQLRSALLFHEPRIAALQVNLKEAYCHTLAISLEIMLYHDDEPLTFDLVWDNGGWRSATLENVS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7924-MONOMER" "DNA-binding transcriptional dual regulator HypT" ["HypT", "QseD", "YjiE"] "MDDCGAILHNIETKWLYDFLTLEKCRNFSQAAVSRNVSQPAFSRRIRALEQAIGVELFNRQVTPLQLSEQGKIFHSQIRHLLQQLESNLAELRGGSDYAQRKIKIAAAHSLSLGLLPSIISQMPPLFTWAIEAIDVDEAVDKLREGQSDCIFSFHDEDLLEAPFDHIRLFESQLFPVCASDEHGEALFNLAQPHFPLLNYSRNSYMGRLINRTLTRHSELSFSTFFVSSMSELLKQVALDGCGIAWLPEYAIQQEIRSGKLVVLNRDELVIPIQAYAYRMNTRMNPVAERFWRELRELEIVLS" [] ["CCO-CYTOSOL"] 0 [] {} 1 "G7925-MONOMER" "isoaspartyl dipeptidase" ["YjiF", "IadA"] "MIDYTAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIGVKCAISDHRSAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSKKALQPIYDLLENCDVPISKLLPTHVNRNVPLFEQALEFARKGGTIDITSSIDEPVAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDDEGNLTHIGVAGFETLLETVQVLVKDYDFSISDALRPLTSSVAGFLNLTGKGEILPGNDADLLVMTPELRIEQVYARGKLMVKDGKACVKGTFETA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 2} 1 -"G7926-MONOMER" "Gate family protein YjiG" ["YjiG"] "MTTQVRKNVMDMFIDGARRGFTIATTNLLPNVVMAFVIIQALKITGLLDWVGHICEPVMALWGLPGEAATVLLAALMSMGGAVGVAASLATAGALTGHDVTVLLPAMYLMGNPVQNVGRCLGTAEVNAKYYPHIITVCVINALLSIWVMQLIV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7927-MONOMER" "uncharacterized protein YjiH" ["YjiH", "Gate family protein YjiH"] "MTQQGDAVAGELATEKVGIKGYLAFFLTIIFFSGVFSGTDSWWRVFDFSVLNGSFGQLPGANGATTSFRGAGGAGAKDGFLFALELAPSVILSLGIISITDGLGGLRAAQQLMTPVLKPLLGIPGICSLALIANLQNTDAAAGMTKELAQEGEITERDKVIFAAYQTSGSAIITNYFSSGVAVFAFLGTSVIVPLAVILVFKFVGANILRVWLNFEERRNPTQGAQA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7926-MONOMER" "Gate family protein YjiG" ["YjiG"] "MTTQVRKNVMDMFIDGARRGFTIATTNLLPNVVMAFVIIQALKITGLLDWVGHICEPVMALWGLPGEAATVLLAALMSMGGAVGVAASLATAGALTGHDVTVLLPAMYLMGNPVQNVGRCLGTAEVNAKYYPHIITVCVINALLSIWVMQLIV" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7927-MONOMER" "uncharacterized protein YjiH" ["YjiH", "Gate family protein YjiH"] "MTQQGDAVAGELATEKVGIKGYLAFFLTIIFFSGVFSGTDSWWRVFDFSVLNGSFGQLPGANGATTSFRGAGGAGAKDGFLFALELAPSVILSLGIISITDGLGGLRAAQQLMTPVLKPLLGIPGICSLALIANLQNTDAAAGMTKELAQEGEITERDKVIFAAYQTSGSAIITNYFSSGVAVFAFLGTSVIVPLAVILVFKFVGANILRVWLNFEERRNPTQGAQA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7928-MONOMER" "RNA 2'-phosphotransferase" ["YjiI", "KptA"] "MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDTVVATSDKKRFSYSSDGRCIRAVQGHSTSQVAISFAEKTPPQFLYHGTASRFLDEIKKQGLIAGERHYVHLSADEATARKVGARHGSPVILTVKAQEMAKRGLPFWQAENGVWLTSTVAVEFLEW" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7929-MONOMER" "putative transporter YjiJ" ["YjiJ"] "MPSSTHPVERFSFSTALFGMLVLTLGMGLGRFLYTPMLPVMMAEGSFSFSQLSWIASGNYAGYLAGSLLFSFGAFHQPSRLRPFLLASALASGLLILAMAWLPPFILVLLIRVLAGVASAGMLIFGSTLIMQHTRHPFVLAALFSGVGIGIALGNEYVLAGLHFDLSSQTLWQGAGALSGMMLIALTLLMPSKKHAITPMPLAKTEQQIMSWWLLAILYGLAGFGYIIVATYLPLMAKDAGSPLLTAHLWTLVGLSIVPGCFGWLWAAKRWGALPCLTANLLVQAICVLLTLASDSPLLLIISSLGFGGTFMGTTSLVMTIARQLSVPGNLNLLGFVTLIYGIGQILGPALTSMLSNGTSALASATLCGAAALFIAALISTVQLFKLQVVTS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"G7930-MONOMER" "PF06977 family protein YjiK" ["YjiK"] "MTKSISLSKRISIIVILFAIVAVCTFFVQSCARKSNHAASFQNYHATIDGKEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDFIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQDSPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDEALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTPQSSH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7929-MONOMER" "putative transporter YjiJ" ["YjiJ"] "MPSSTHPVERFSFSTALFGMLVLTLGMGLGRFLYTPMLPVMMAEGSFSFSQLSWIASGNYAGYLAGSLLFSFGAFHQPSRLRPFLLASALASGLLILAMAWLPPFILVLLIRVLAGVASAGMLIFGSTLIMQHTRHPFVLAALFSGVGIGIALGNEYVLAGLHFDLSSQTLWQGAGALSGMMLIALTLLMPSKKHAITPMPLAKTEQQIMSWWLLAILYGLAGFGYIIVATYLPLMAKDAGSPLLTAHLWTLVGLSIVPGCFGWLWAAKRWGALPCLTANLLVQAICVLLTLASDSPLLLIISSLGFGGTFMGTTSLVMTIARQLSVPGNLNLLGFVTLIYGIGQILGPALTSMLSNGTSALASATLCGAAALFIAALISTVQLFKLQVVTS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7930-MONOMER" "PF06977 family protein YjiK" ["YjiK"] "MTKSISLSKRISIIVILFAIVAVCTFFVQSCARKSNHAASFQNYHATIDGKEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDFIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQDSPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDEALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTPQSSH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7931-MONOMER" "putative ATPase, activator of (R)-hydroxyglutaryl-CoA dehdratase" ["YjiL"] "MAYSIGIDSGSTATKGILLADGVITRRFLVPTPFRPATAITEAWETLREGLETTPFLTLTGYGRQLVDFADKQVTEISCHGLGARFLAPATRAVIDIGGQDSKVIQLDDDGNLCDFLMNDKCAAGTGRFLEVISRTLGTSVEQLDSITENVTPHAITSMCTVFAESEAISLRSAGVAPEAILAGVINAMARRSANFIARLSCEAPILFTGGVSHCQKFARMLESHLRMPVNTHPDAQFAGAIGAAVIGQRVRTRR" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 0 "G7932-MONOMER" "putative dehydratase subunit" ["YjiM"] "MSLVTDLPAIFDQFSEARQTGFLTVMDLKERGIPLVGTYCTFMPQEIPMAAGAVVVSLCSTSDETIEEAEKDLPRNLCPLIKSSYGFGKTDKCPYFYFSDLVVGETTCDGKKKMYEYMAEFKPVHVMQLPNSVKDDASRALWKAEMLRLQKTVEERFGHEISEDALRDAIALKNRERRALANFYHLGQLNPPALSGSDILKVVYGATFRFDKEALINELDAMTARVRQQWEEGQRLDPRPRILITGCPIGGAAEKVVRAIEENGGWVVGYENCTGAKATEQCVAETGDVYDALADKYLAIGCSCVSPNDQRLKMLSQMVEEYQVDGVVDVILQACHTYAVESLAIKRHVRQQHNIPYIAIETDYSTSDVGQLSTRVAAFIEML" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"G7933-MONOMER" "DUF445 domain-containing protein YjiN" ["YjiN"] "MNKLIELRRAKRLALSLLLIAAATFVVTLFLPPNFWVSGVKAIAEAAMVGALADWFAVVALFRRVPIPIISRHTAIIPRNKDRIGENLGQFVQEKFLDTQSLVALIRRHEPALLIGNWFSQPENARRVGQHLLQIMSGFLELTDDARIQRLLKRAVHRAIDKVDLSGTSALMLESMTKNDRHQVLLDTLIAQLIALLQRDKSRKFIAQQIVRWLESEHPLKAKILPTEWLGEHSAELVSDAVNSLLDDISRDRAHQIRHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKVDINSEDSRVKERIARAGQWFGETLIADDALRASLNGHLEQAAHRVAPEFSAFLTRHISDTVKSWDARDMSRQIELNIGKDLQFIRVNGTLVGGCIGLILYLLSQLPALFPLGNF" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7933-MONOMER" "DUF445 domain-containing protein YjiN" ["YjiN"] "MNKLIELRRAKRLALSLLLIAAATFVVTLFLPPNFWVSGVKAIAEAAMVGALADWFAVVALFRRVPIPIISRHTAIIPRNKDRIGENLGQFVQEKFLDTQSLVALIRRHEPALLIGNWFSQPENARRVGQHLLQIMSGFLELTDDARIQRLLKRAVHRAIDKVDLSGTSALMLESMTKNDRHQVLLDTLIAQLIALLQRDKSRKFIAQQIVRWLESEHPLKAKILPTEWLGEHSAELVSDAVNSLLDDISRDRAHQIRHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKVDINSEDSRVKERIARAGQWFGETLIADDALRASLNGHLEQAAHRVAPEFSAFLTRHISDTVKSWDARDMSRQIELNIGKDLQFIRVNGTLVGGCIGLILYLLSQLPALFPLGNF" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7934-MONOMER" "putative inactive recombination-promoting nuclease-like protein RpnD" ["YjiQ", "RpnD", "YjiP", "truncated recombination-promoting nuclease-like protein RpnD"] "MTNFTTSTPHDALFKTFLTHPDTARDFMEIHLPKDLRELCDLDSLKLESASFVDEKLRALHSDILWSVKTREGDGYIYVVIEHQSREDIHMAFRLMRYSMAVM*RHIEHDKRQPLPLVIPMLFYHGSRSPYPWSLCWLDEFADPTTARKLYNAAFPLVDVTVVPDDEIVQHRRVALLELIQKHIRQRDLMGLIDQLVVLLVTECANDSQITALLNYILLTGDEARFNEFISELTRRMPQHRERIMTIAERIHNDGYIKGEQRILRLLLQNGADPEWIQKITGLSAEQMQALRQPLPERERYSWLKS" [] [] 0 [] {} 0 "G7936-MONOMER" "fused putative DNA-binding transcriptional regulator/putative aminotransferase YjiR" ["YjiR"] "MTRYQHLATLLAERIEQGLYRHGEKLPSVRSLSQEHGVSISTVQQAYQTLETMKLITPQPRSGYFVAQRKAQPPVPPMTRPVQRPVEITQWDQVLDMLEAHSDSSIVPLSKSTPDVEAPSLKPLWRELSRVVQHNLQTVLGYDLLAGQRVLREQIARLMLDSGSVVTADDIIITSGCHNSMSLALMAVCKPGDIVAVESPCYYGSMQMLRGMGVKVIEIPTDPETGISVEALELALEQWPIKGIILVPNCNNPLGFIMPDARKRAVLSLAQRHDIVIFEDDVYGELATEYPRPRTIHSWDIDGRVLLCSSFSKSIAPGLRVGWVAPGRYHDKLMHMKYAISSFNVPSTQMAAATFVLEGHYHRHIRRMRQIYQRNLALYTCWIREYFPCEICITRPKGGFLLWIELPEQVDMVCVARQLCRMKIQVAAGSIFSASGKYRNCLRINCALPLSETYREALKQIGEAVYRAME" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7937-MONOMER" "DUF1127 domain-containing protein YjiS" ["YjiS"] "MEFHENRAKAPFIGLVQLWQAVRRWRRQMQTRRVLQQMSDERLKDIGLRREDVE" [] [] 0 [] {} 0 @@ -3241,10 +3241,10 @@ "G7942-MONOMER" "pyruvate:H+ symporter" ["BtsT", "YjiY"] "MDTKKIFKHIPWVILGIIGAFCLAVVALRRGEHISALWIVVASVSVYLVAYRYYSLYIAQKVMKLDPTRATPAVINNDGLNYVPTNRYVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGTLWLLAGVVLAGAVQDFMVLFISSRRNGASLGEMIKEEMGPVPGTIALFGCFLIMIIILAVLALIVVKALAESPWGVFTVCSTVPIALFMGIYMRFIRPGRVGEVSVIGIVLLVASIYFGGVIAHDPYWGPALTFKDTTITFALIGYAFVSALLPVWLILAPRDYLATFLKIGVIVGLALGIVVLNPELKMPAMTQYIDGTGPLWKGALFPFLFITIACGAVSGFHALISSGTTPKLLANETDARFIGYGAMLMESFVAIMALVAASIIEPGLYFAMNTPPAGLGITMPNLHEMGGENAPIIMAQLKDVTAHAAATVSSWGFVISPEQILQTAKDIGEPSVLNRAGGAPTLAVGIAHVFHKVLPMADMGFWYHFGILFEALFILTALDAGTRSGRFMLQDLLGNFIPFLKKTDSLVAGIIGTAGCVGLWGYLLYQGVVDPLGGVKSLWPLFGISNQMLAAVALVLGTVVLIKMKRTQYIWVTVVPAVWLLICTTWALGLKLFSTNPQMEGFFYMASQYKEKIANGTDLTAQQIANMNHIVVNNYTNAGLSILFLIVVYSIIFYGFKTWLAVRNSDKRTDKETPYVPIPEGGVKISSHH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "G7944-MONOMER" "putative DNA-binding transcriptional regulator LgoR" ["LgoR", "YjjM"] "MSRSQNLRHNVINQVIDDMARGHIPSPLPSQSALAEMYNISRTTVRHILSHLRECGVLTQVGNDYVIARKPDHDDGFACTTASMSEQNKVFEQAFFTMINQRQLRPGETFSELQLARAAGVSPVVVREYLLKFGRYNLIHSEKRGQWSMKQFDQSYAEQLFELREMLETHSLQHFLNLPDHDPRWLQAKTMLERHRLLRDNIGNSFRMFSQLDRDFHSLLLSAADNIFFDQSLEIISVIFHFHYQWDESDLKQRNIIAVDEHMTILSALICRSDLDATLALRNHLNSAKQSMIRSINENTRYAH" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7945-MONOMER" "L-galactonate oxidoreductase" ["LgoD", "YjjN"] "MSTMNVLICQQPKELVWKQREIPIPGDNEALIKIKSVGICGTDIHAWGGNQPFFSYPRVLGHEICGEIVGLGKNIADLKNGQQVAVIPYVACQQCPACKSGRTNCCEKISVIGVHQDGGFSEYLSVPVANILPADGIDPQAAALIEPFAISAHAVRRAAIAPGEQVLVVGAGPIGLGAAAIAKADGAQVVVADTSPARREHVATRLELPLLDPSAEDFDAQLRAQFGGSLAQKVIDATGNQHAMNNTVNLIRHGGTVVFVGLFKGELQFSDPEFHKKETTMMGSRNATPEDFAKVGRLMAEGKITADMMLTHRYPFATLAETYERDVINNRELIKGVITF" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 2} 0 -"G7946-MONOMER" "putative succinate exporter YjjP" ["YjjP"] "MQTEQQRAVTRLCIQCGLFLLQHGAESALVDELSSRLGRALGMDSVESSISSNAIVLTTIKDGQCLTSTRKNHDRGINMHVVTEVQHIVILAEHHLLDYKGVEKRFSQIQPLRYPRWLVALMVGLSCACFCKLNNGGWDGAVITFFASTTAMYIRQLLAQRHLHPQINFCLTAFAATTISGLLLQLPTFSNTPTIAMAASVLLLVPGFPLINAVADMFKGHINTGLARWAIASLLTLATCVGVVMALTIWGLRGWV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"G7946-MONOMER" "putative succinate exporter YjjP" ["YjjP"] "MQTEQQRAVTRLCIQCGLFLLQHGAESALVDELSSRLGRALGMDSVESSISSNAIVLTTIKDGQCLTSTRKNHDRGINMHVVTEVQHIVILAEHHLLDYKGVEKRFSQIQPLRYPRWLVALMVGLSCACFCKLNNGGWDGAVITFFASTTAMYIRQLLAQRHLHPQINFCLTAFAATTISGLLLQLPTFSNTPTIAMAASVLLLVPGFPLINAVADMFKGHINTGLARWAIASLLTLATCVGVVMALTIWGLRGWV" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "G7947-MONOMER" "DNA-binding transcriptional repressor YjjQ" ["YjjQ"] "MLPGCCKNGIVISKIPVMQAGLKEVMRTHFPEYEIISSASAEDLTLLQLRRSGLVIADLAGESEDPRSVCEHYYSLISQYREIHWVFMVSRSWYSQAVELLMCPTATLLSDVEPIENLVKTVRSGNTHAERISAMLTSPAMTETHDFSYRSVILTLSERKVLRLLGKGWGINQIASLLKKSNKTISAQKNSAMRRLAIHSNAEMYAWINSAQGARELNLPSVYGDAAEWNTAELRREMSHS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "G7948-MONOMER" "DNA-binding transcriptional regulator BglJ" ["YjjR", "BglJ"] "MEHSRIKKRNVALIEKCVMSSIGIESLFRKFAGNPYKLHTYTSQESFQDAMSRISFAAVIFSFSAMRSERREGLSCLTELAIKFPRTRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEIFHQELFLSLNGVRQATDRLNNQWYINQSRTLSPTEREILRFMSRGYSMTQIAEQLKRNIKTIRAHKFNVMSKLGVSSDAGLLEAADILLCMRHCETSNVLHPY" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"G7949-MONOMER" "ferric-siderophore reductase FhuF" ["YjjS", "FhuF", "hydroxamate siderophore iron reductase"] "MAYRSAPLYEDVIWRTHLQPQDPTLAQAVRATIAKHREHLLEFIRLDEPAPLNAMTLAQWSSPNVLSSLLAVYSDHIYRNQPMMIRENKPLISLWAQWYIGLMVPPLMLALLTQEKALDVSPEHFHAEFHETGRVACFWVDVCEDKNATPHSPQHRMETLISQALVPVVQALEATGEINGKLIWSNTGYLINWYLTEMKQLLGEATVESLRHALFFEKTLTNGEDNPLWRTVVLRDGLLVRRTCCQRYRLPDVQQCGDCTLK" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {"CPD-6": 1} 0 +"G7949-MONOMER" "ferric-siderophore reductase FhuF" ["YjjS", "FhuF", "hydroxamate siderophore iron reductase"] "MAYRSAPLYEDVIWRTHLQPQDPTLAQAVRATIAKHREHLLEFIRLDEPAPLNAMTLAQWSSPNVLSSLLAVYSDHIYRNQPMMIRENKPLISLWAQWYIGLMVPPLMLALLTQEKALDVSPEHFHAEFHETGRVACFWVDVCEDKNATPHSPQHRMETLISQALVPVVQALEATGEINGKLIWSNTGYLINWYLTEMKQLLGEATVESLRHALFFEKTLTNGEDNPLWRTVVLRDGLLVRRTCCQRYRLPDVQQCGDCTLK" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"CPD-6": 1} 0 "G7950-MONOMER" "16S rRNA m2G1207 methyltransferase" ["YjjT", "RsmC", "ribosomal RNA small subunit methyltransferase C"] "MSAFTPASEVLLRHSDDFEQSRILFAGDLQDDLPARLDTAASRAHTQQFHHWQVLSRQMGDNARFSLVATADDVADCDTLIYYWPKNKPEAQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEQMLADYAPLNKVDSARRCGLYFGRLEKQPVFDAEKFWGEYSVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGFHEVIAQTGRFKVYRAIMTRQAKKG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "G7951-MONOMER" "putative patatin-like phospholipase YjjU" ["YjjU", "putative esterase"] "MGQRIPVTLGNIAPLSLRPFQPGRIALVCEGGGQRGIFTAGVLDEFMRAQFNPFDLYLGTSAGAQNLSAFICNQPGYARKVIMRYTTKREFFDPLRFVRGGNLIDLDWLVEATASQMPLQMDTAARLFDSGKSFYMCACRQDDYAPNYFLPTKQNWLDVIRASSAIPGFYRSGVSLEGINYLDGGISDAIPVKEAARQGAKTLVVIRTVPSQMYYTPQWFKRMERWLGDSSLQPLVNLVQHHETSYRDIQQFIEKPPGKLRIFEIYPPKPLHSIALGSRIPALREDYKLGRLCGRYFLATVGKLLTEKAPLTRHLVPVVTPESIVIPPAPVANDTLVAEVSDAPQANDPTFNNEDLA" [] [] 0 [] {} 0 "G7952-MONOMER" "putative metal-dependent hydrolase YjjV" ["YjjV", "putative DNase YjjV"] "MICRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCELRREPADEIAQALLNNTYTLFNVP" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 @@ -3256,7 +3256,7 @@ "G8221-MONOMER" "acetolactate synthase II subunit IlvG" ["IlvO", "IlvG_1", "IlvG", "acetolactate synthase II, large subunit, N-ter fragment (pseudogene)", "acetolactate synthase II subunit IlvG, N-terminal fragment (pseudogene)"] "MNGAQWVVHALRAQGVNTVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAAMAAIGYARATGKTGVCIATSGPGATNLITGLADALLDSIPVVAITGQVSAPFIGTDAFQEVDVLGLSLACTKHSFLVQSLEELPRIMAEAFDVACSGRPGPVLVDIPKDIQLASGDLEPWFTTVENEVTFPHAEVEQARQMLAKAQKPMLYVGGGVGMAQAVPALREFLAATKMPATCTLKGLGAVEADYPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDRVTGKLNTFAPHASVIHMDIDPAEMNKLRQAHVALQGDLNALLPALQQPLNQ*LAATLRAAA**TFLALRPSR*RYLRAVVVKTTVGS*TCGLRRDHRCGAAPDVGCAAHRPHSPGKFHHLQRFRYHGFWFTGGGWRTSRATERYRCLYLR*RLFHDECARAGHRKTQAVTVENRLTR*PTVRDGSTMAATVFSGTIQRNHPY**PRFPHVSQRLRHPWPTHHPERPG*SGTRHHAEQ*WAIPASCLNRRT*ERLAAGAAWRQ*FRNVGEII" [] [] 0 [] {} 1 "GABATRANSAM-MONOMER" "4-aminobutyrate aminotransferase GabT" ["GabT"] "MNSNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEAKQ" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "GABP-MONOMER" "4-aminobutanoate:H+ symporter" ["GabP", "GabP permease", "GABA permease", "GABA proton symporter"] "MGQSSQPHELGGGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPAQQLEVISTGLLAIGIICTVPIMARWKKLVLWQKTPVHNTR" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 1 [] {} 0 -"GALACTARDEHYDRA-MONOMER" null ["YhaG", "GarD"] "MANIEIRQETPTAFYIKVHDTDNVAIIVNDNGLKAGTRFPDGLELIEHIPQGHKVALLDIPANGEIIRYGEVIGYAVRAIPRGSWIDESMVVLPEAPPLHTLPLATKVPEPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKIIERDLLPKYPNVDGVVGLNHLYGCGVAINAPAAVVPIRTIHNISLNPNFGGEVMVIGLGCEKLQPERLLTGTDDVQAIPVESASIVSLQDEKHVGFQSMVEDILQIAERHLQKLNQRQRETCPASELVVGMQCGGSDAFSGVTANPAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTPRAVNEEVGKRLLEEMEWYDNYLNMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGKSAIVEVLSPGQRPTKRGLIYAATPASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTELANRWFDLMDINAGTIATGEETIEEVGWKLFHFILDVASGKKKTFSDQWGLHNQLAVFNPAPVT" [] ["CCO-CYTOSOL"] 0 [] {} 1 +"GALACTARDEHYDRA-MONOMER" "galactarate dehydratase" ["YhaG", "GarD"] "MANIEIRQETPTAFYIKVHDTDNVAIIVNDNGLKAGTRFPDGLELIEHIPQGHKVALLDIPANGEIIRYGEVIGYAVRAIPRGSWIDESMVVLPEAPPLHTLPLATKVPEPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKIIERDLLPKYPNVDGVVGLNHLYGCGVAINAPAAVVPIRTIHNISLNPNFGGEVMVIGLGCEKLQPERLLTGTDDVQAIPVESASIVSLQDEKHVGFQSMVEDILQIAERHLQKLNQRQRETCPASELVVGMQCGGSDAFSGVTANPAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTPRAVNEEVGKRLLEEMEWYDNYLNMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGKSAIVEVLSPGQRPTKRGLIYAATPASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTELANRWFDLMDINAGTIATGEETIEEVGWKLFHFILDVASGKKKTFSDQWGLHNQLAVFNPAPVT" [] ["CCO-CYTOSOL"] 0 [] {} 1 "GALACTITOLPDEHYD-MONOMER" "galactitol-1-phosphate 5-dehydrogenase" ["GatD"] "MKSVVNDTDGIVRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 2} 1 "GALACTOACETYLTRAN-MONOMER" "galactoside O-acetyltransferase" ["LacA", "thiogalactoside acetyltransferase"] "MNMPMTERIRAGKLFTDMCEGLPEKRLRGKTLMYEFNHSHPSEVEKRESLIKEMFATVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCRVIREINDRDKHYYFKDYKVESSV" [] ["CCO-CYTOSOL"] 1 [] {} 1 "GALACTOKIN-MONOMER" null ["GalA", "GalK"] "MSLKEKTQSLFANAFGYPATHTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAPRDDRKVRVMAADYENQLDEFSLDAPIVAHENYQWANYVRGVVKHLQLRNNSFGGVDMVISGNVPQGAGLSSSASLEVAVGTVLQQLYHLPLDGAQIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLIDCRSLGTKAVSMPKGVAVVIINSNFKRTLVGSEYNTRREQCETGARFFQQPALRDVTIEEFNAVAHELDPIVAKRVRHILTENARTVEAASALEQGDLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDKGGVRMTGGGFGGCIVALIPEELVPAVQQAVAEQYEAKTGIKETFYVCKPSQGAGQC" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MG+2": 1} 0 @@ -3282,13 +3282,13 @@ "GLNE-MONOMER" "fused glutamine synthetase deadenylase/glutamine synthetase adenylyltransferase" ["GlnE"] "MKPLSSPLQQYWQTVVERLPEPLAEESLSAQAKSVLTFSDFVQDSVIAHPEWLTELESQPPQADEWQHYAAWLQEALCNVSDEAGLMRELRLFRRRIMVRIAWAQTLALVTEESILQQLSYLAETLIVAARDWLYDACCREWGTPCNAQGEAQPLLILGMGKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIKVLDQPTQDGFVYRVDMRLRPFGESGPLVLSFAALEDYYQEQGRDWERYAMVKARIMGDSEGVYANELRAMLRPFVFRRYIDFSVIQSLRNMKGMIAREVRRRGLTDNIKLGAGGIREIEFIVQVFQLIRGGREPSLQSRSLLPTLSAIAELHLLSENDAEQLRVAYLFLRRLENLLQSINDEQTQTLPSDELNRARLAWAMDFADWPQLTGALTAHMTNVRRVFNELIGDDESETQEESLSEQWRELWQDALQEDDTTPVLAHLSEDDRKQVLTLIADFRKELDKRTIGPRGRQVLDHLMPHLLSDVCAREDAAVTLSRITALLVGIVTRTTYLELLSEFPAALKHLISLCAASPMIASQLARYPLLLDELLDPNTLYQPTATDAYRDELRQYLLRVPEDDEEQQLEALRQFKQAQLLRIAAADIAGTLPVMKVSDHLTWLAEAMIDAVVQQAWVQMVARYGKPNHLNEREGRGFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMHLFSTRTSSGILYEVDARLRPSGAAGMLVTSAEAFADYQKNEAWTWEHQALVRARVVYGDPQLTAHFDAVRREIMTLPREGKTLQTEVREMREKMRAHLGNKHRDRFDIKADEGGITDIEFITQYLVLRYAHEKPKLTRWSDNVRILELLAQNDIMEEQEAMALTRAYTTLRDELHHLALQELPGHVSEDCFTAERELVRASWQKWLVEE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "GLNH-MONOMER" "L-glutamine ABC transporter periplasmic binding protein" ["GlnBP"] "MKSVLKVSLAALTLAFAVSSHAADKKLVVATDTAFVPFEFKQGDKYVGFDVDLWAAIAKELKLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGTYNEIYKKWFGTEPK" ["CCO-PERI-BAC"] ["CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 1 "GLNP-MONOMER" "L-glutamine ABC transporter membrane subunit" [] "MQFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFARTFGGWIANHVALVFIEVIRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMKIL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"GLNQ-MONOMER" "L-glutamine ABC transporter ATP binding subunit" [] "MIEFKNVSKHFGPTQVLHNIDLNIAQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGANKEEAEKLARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKMMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGNPQVLIKNPPSQRLQEFLQHVS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"GLNQ-MONOMER" "L-glutamine ABC transporter ATP binding subunit" [] "MIEFKNVSKHFGPTQVLHNIDLNIAQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGANKEEAEKLARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKMMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGNPQVLIKNPPSQRLQEFLQHVS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "GLNS-MONOMER" "glutamine—tRNA ligase" ["GlnS", "GlnRS"] "MSEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPGAADDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "GLPF-MONOMER" "glycerol facilitator" ["GlpF"] "MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHLPCDICVVEEKETTTPSEQKASL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "GLPT-MONOMER" null ["GlpT", "GlpT glycerol-3-P MFS transporter"] "MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQERNGG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "GLTJ-MONOMER" "glutamate/aspartate ABC transporter membrane subunit GltJ" [] "MSIDWNWGIFLQQAPFGNTTYLGWIWSGFQVTIALSICAWIIAFLVGSFFGILRTVPNRFLSGLGTLYVELFRNVPLIVQFFTWYLVIPELLPEKIGMWFKAELDPNIQFFLSSMLCLGLFTAARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVLLPNAYRVIVPPMTSEMMNLVKNSAIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLAYVLINAFIMLVMTLVERKVRLPGNMGGK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "GLTK-MONOMER" "glutamate/aspartate ABC transporter membrane subunit GltK" [] "MYEFDWSSIVPSLPYLLDGLVITLKITVTAVVIGILWGTMLAVMRLSSFAPVAWFAKAYVNVFRSIPLVMVLLWFYLIVPGFLQNVLGLSPKNDIRLISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQDTSLVYVLSLADFFRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSYLKRRTA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"GLTL-MONOMER" "glutamate/aspartate ABC transporter ATP binding subunit" [] "MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLIKTVNGLEPVQQGEITVDGIVVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQVKVLKRDKAPAREKALKLLERVGLSAHANKFPAQLSGGQQQRVAIARALCMDPIAMLFDEPTSALDPEMINEVLDVMVELANEGMTMMVVTHEMGFARKVANRVIFMDEGKIVEDSPKDAFFDDPKSDRAKDFLAKILH" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 +"GLTL-MONOMER" "glutamate/aspartate ABC transporter ATP binding subunit" [] "MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLIKTVNGLEPVQQGEITVDGIVVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQVKVLKRDKAPAREKALKLLERVGLSAHANKFPAQLSGGQQQRVAIARALCMDPIAMLFDEPTSALDPEMINEVLDVMVELANEGMTMMVVTHEMGFARKVANRVIFMDEGKIVEDSPKDAFFDDPKSDRAKDFLAKILH" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "GLTP-MONOMER" "glutamate/aspartate : H+ symporter GltP" ["GltP", "GltII"] "MKNIKFSLAWQILFAMVLGILLGSYLHYHSDSRDWLVVNLLSPAGDIFIHLIKMIVVPIVISTLVVGIAGVGDAKQLGRIGAKTIIYFEVITTVAIILGITLANVFQPGAGVDMSQLATVDISKYQSTTEAVQSSSHGIMGTILSLVPTNIVASMAKGEMLPIIFFSVLFGLGLSSLPATHREPLVTVFRSISETMFKVTHMVMRYAPVGVFALIAVTVANFGFSSLWPLAKLVLLVHFAILFFALVVLGIVARLCGLSVWILIRILKDELILAYSTASSESVLPRIIEKMEAYGAPVSITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGIDLSIWQEIILVLTLMVTSKGIAGVPGVSFVVLLATLGSVGIPLEGLAFIAGVDRILDMARTALNVVGNALAVLVIAKWEHKFDRKKALAYEREVLGKFDKTADQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "GLTS-MONOMER" "glutamate:sodium symporter" ["GltC", "GltS"] "MFHLDTLATLVAATLTLLLGRKLVHSVSFLKKYTIPEPVAGGLLVALALLVLKKSMGWEVNFDMSLRDPLMLAFFATIGLNANIASLRAGGRVVGIFLIVVVGLLVMQNAIGIGMASLLGLDPLMGLLAGSITLSGGHGTGAAWSKLFIERYGFTNATEVAMACATFGLVLGGLIGGPVARYLVKHSTTPNGIPDDQEVPTAFEKPDVGRMITSLVLIETIALIAICLTVGKIVAQLLAGTAFELPTFVCVLFVGVILSNGLSIMGFYRVFERAVSVLGNVSLSLFLAMALMGLKLWELASLALPMLAILVVQTIFMALYAIFVTWRMMGKNYDAAVLAAGHCGFGLGATPTAIANMQAITERFGPSHMAFLVVPMVGAFFIDIVNALVIKLYLMLPIFAG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "GLU6PDEHYDROG-MONOMER" null ["Zwf", "G6PDH"] "MAVTQTAQACDLVIFGAKGDLARRKLLPSLYQLEKAGQLNPDTRIIGVGRADWDKAAYTKVVREALETFMKETIDEGLWDTLSARLDFCNLDVNDTAAFSRLGAMLDQKNRITINYFAMPPSTFGAICKGLGEAKLNAKPARVVMEKPLGTSLATSQEINDQVGEYFEECQVYRIDHYLGKETVLNLLALRFANSLFVNNWDNRTIDHVEITVAEEVGIEGRWGYFDKAGQMRDMIQNHLLQILCMIAMSPPSDLSADSIRDEKVKVLKSLRRIDRSNVREKTVRGQYTAGFAQGKKVPGYLEEEGANKSSNTETFVAIRVDIDNWRWAGVPFYLRTGKRLPTKCSEVVVYFKTPELNLFKESWQDLPQNKLTIRLQPDEGVDIQVLNKVPGLDHKHNLQITKLDLSYSETFNQTHLADAYERLLLETMRGIQALFVRRDEVEEAWKWVDSITEAWAMDNDAPKPYQAGTWGPVASVAMITRDGRSWNEFE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -3316,18 +3316,18 @@ "GLUTRACE-MONOMER" "glutamate racemase" ["YijA", "Glr", "Dga", "MurI"] "MATKLQDGNTPCLAATPSEPRPTVLVFDSGVGGLSVYDEIRHLLPDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVGVVPAIKPAARLTANGIVGLLATRGTVKRSYTHELIARFANECQIEMLGSAEMVELAEAKLHGEDVSLDALKRILRPWLRMKEPPDTVVLGCTHFPLLQEELLQVLPEGTRLVDSGAAIARRTAWLLEHEAPDAKSADANIAFCMAMTPGAEQLLPVLQRYGFETLEKLAVLG" [] ["CCO-CYTOSOL"] 0 [] {} 0 "GLUTRNAREDUCT-MONOMER" "glutamyl-tRNA reductase" ["GtrA", "HemA"] "MTLLALGINHKTAPVSLRERVSFSPDKLDQALDSLLAQPMVQGGVVLSTCNRTELYLSVEEQDNLQEALIRWLCDYHNLNEEDLRKSLYWHQDNDAVSHLMRVASGLDSLVLGEPQILGQVKKAFADSQKGHMKASELERMFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIFESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQILADEVGAEVIALSDIDERLREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRKAAAVEAETIVAQETSEFMAWLRAQSASETIREYRSQAEQVRDELTAKALAALEQGGDAQAIMQDLAWKLTNRLIHAPTKSLQQAARDGDNERLNILRDSLGLE" [] ["CCO-CYTOSOL"] 0 [] {} 1 "GLUTSEMIALDEHYDROG-MONOMER" "glutamate-5-semialdehyde dehydrogenase" ["ProA"] "MLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQDALKSCGLPAGAVQAIDNPDRALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDESVEIAEALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQAGPAKVVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIREHGTQHSDAILTRDMRNAQRFVNEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIGDYTIRA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"GLVB-MONOMER" "putative PTS enzyme II component GlvB" ["YidO", "YidN"] "MFSNHADMMLTQIAIGLCFTLLYFVVFRTLILQFNMCTPGREDAEVKLYSKAEYKASRGQTTAAEPKKELDQAAGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLINSHQSAENVAITEAV" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"GLVB-MONOMER" "putative PTS enzyme II component GlvB" ["YidO", "YidN"] "MFSNHADMMLTQIAIGLCFTLLYFVVFRTLILQFNMCTPGREDAEVKLYSKAEYKASRGQTTAAEPKKELDQAAGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLINSHQSAENVAITEAV" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "GLVC-MONOMER" "putative PTS enzyme II component GlvC" ["PtiC"] "MLSQIQRFGGAMFTPVLLFPFAGIVVGLAILLQNPMFVGESLTDPNSLFAQIVHIIEEGGWTVFRNMPLIFAVGLPIGLAKQAQGRACLAVMVSFLTWNYFINAMGMTWGSYFGVDFTQDAVAGSGLTMMAGIKTLDTSIIGAIIISGIVTALHNRLFDKKLPVFLGIFQGTSYVVIIAFLVMIPCAWLTLLGWPKVQMGIESLQAFLRSAGALGVWVYTFLERILIPTGLHHFIYGQFIFGPAAVEGGIQMYWAQHLQEFSLSAEPLKSLFPEGGFALHGNSKIFGAVGISLAMYFTAAPENRVKVAGLLIPATLTAMLVGITEPLEFTFLFISPLLFAVHAVLAASMSTVMYLFGVVGNMGGGLID" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "GLY3KIN-MONOMER" "glycerate 2-kinase 2" ["YbbZ", "GlxK", "glycerate 2-kinase II"] "MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNIVTLEVCGPMGEKVNAFYGLTGDGKTAVIEMAAASGLMLVAPEKRNPLLASSFGTGELIRHALDNDIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQALAANGGNLARVASIEMDECDPRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLNAVNLAQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGETNLFNSARNIACAIKIGQGIKN" [] ["CCO-CYTOSOL"] 0 [] {} 0 "GLYC3PDEHYDROGBIOSYN-MONOMER" "glycerol-3-phosphate dehydrogenase" ["GpsA"] "MNQRNASMTVIGAGSYGTALAITLARNGHEVVLWGHDPEHIATLERDRCNAAFLPDVPFPDTLHLESDLATALAASRNILVVVPSHVFGEVLRQIKPLMRPDARLVWATKGLEAETGRLLQDVAREALGDQIPLAVISGPTFAKELAAGLPTAISLASTDQTFADDLQQLLHCGKSFRVYSNPDFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTALITRGLAEMSRLGAALGADPATFMGMAGLGDLVLTCTDNQSRNRRFGMMLGQGMDVQSAQEKIGQVVEGYRNTKEVRELAHRFGVEMPITEEIYQVLYCGKNAREAALTLLGRARKDERSSH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"GLYCDEH-MONOMER" "L-1,2-propanediol dehydrogenase / glycerol dehydrogenase" ["GldA"] "MDRIIQSPGKYIQGADVINRLGEYLKPLAERWLVVGDKFVLGFAQSTVEKSFKDAGLVVEIAPFGGECSQNEIDRLRGIAETAQCGAILGIGGGKTLDTAKALAHFMGVPVAIAPTIASTDAPCSALSVIYTDEGEFDRYLLLPNNPNMVIVDTKIVAGAPARLLAAGIGDALATWFEARACSRSGATTMAGGKCTQAALALAELCYNTLLEEGEKAMLAAEQHVVTPALERVIEANTYLSGVGFESGGLAAAHAVHNGLTAIPDAHHYYHGEKVAFGTLTQLVLENAPVEEIETVAALSHAVGLPITLAQLDIKEDVPAKMRIVAEAACAEGETIHNMPGGATPDQVYAALLVADQYGQRFLQEWE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 -"GLYCEROL-3-P-ACYLTRANSFER-MONOMER" "glycerol-3-phosphate 1-O-acyltransferase" ["sn-glycerol-3-phosphate acyltransferase", "GPAT", "glycerolphosphate acyltransferase", "glycerol-3-phosphate O-acyltransferase", "PlsB"] "MSGWPRIYYKLLNLPLSILVKSKSIPADPAPELGLDTSRPIMYVLPYNSKADLLTLRAQCLAHDLPDPLEPLEIDGTLLPRYVFIHGGPRVFTYYTPKEESIKLFHDYLDLHRSNPNLDVQMVPVSVMFGRAPGREKGEVNPPLRMLNGVQKFFAVLWLGRDSFVRFSPSVSLRRMADEHGTDKTIAQKLARVARMHFARQRLAAVGPRLPARQDLFNKLLASRAIAKAVEDEARSKKISHEKAQQNAIALMEEIAANFSYEMIRLTDRILGFTWNRLYQGINVHNAERVRQLAHDGHELVYVPCHRSHMDYLLLSYVLYHQGLVPPHIAAGINLNFWPAGPIFRRLGAFFIRRTFKGNKLYSTVFREYLGELFSRGYSVEYFVEGGRSRTGRLLDPKTGTLSMTIQAMLRGGTRPITLIPIYIGYEHVMEVGTYAKELRGATKEKESLPQMLRGLSKLRNLGQGYVNFGEPMPLMTYLNQHVPDWRESIDPIEAVRPAWLTPTVNNIAADLMVRINNAGAANAMNLCCTALLASRQRSLTREQLTEQLNCYLDLMRNVPYSTDSTVPSASASELIDHALQMNKFEVEKDTIGDIIILPREQAVLMTYYRNNIAHMLVLPSLMAAIVTQHRHISRDVLMEHVNVLYPMLKAELFLRWDRDELPDVIDALANEMQRQGLITLQDDELHINPAHSRTLQLLAAGARETLQRYAITFWLLSANPSINRGTLEKESRTVAQRLSVLHGINAPEFFDKAVFSSLVLTLRDEGYISDSGDAEPAETMKVYQLLAELITSDVRLTIESATQGEG" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 1 [] {} 0 -"GLYCEROL-KIN-MONOMER" "glycerol kinase" ["GlpK"] "MTEKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAGWKKAVKRAMAWEEHDE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"ZN+2": 1} 1 +"GLYCDEH-MONOMER" "L-1,2-propanediol dehydrogenase / glycerol dehydrogenase" ["GldA"] "MDRIIQSPGKYIQGADVINRLGEYLKPLAERWLVVGDKFVLGFAQSTVEKSFKDAGLVVEIAPFGGECSQNEIDRLRGIAETAQCGAILGIGGGKTLDTAKALAHFMGVPVAIAPTIASTDAPCSALSVIYTDEGEFDRYLLLPNNPNMVIVDTKIVAGAPARLLAAGIGDALATWFEARACSRSGATTMAGGKCTQAALALAELCYNTLLEEGEKAMLAAEQHVVTPALERVIEANTYLSGVGFESGGLAAAHAVHNGLTAIPDAHHYYHGEKVAFGTLTQLVLENAPVEEIETVAALSHAVGLPITLAQLDIKEDVPAKMRIVAEAACAEGETIHNMPGGATPDQVYAALLVADQYGQRFLQEWE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 +"GLYCEROL-3-P-ACYLTRANSFER-MONOMER" "glycerol-3-phosphate 1-O-acyltransferase" ["sn-glycerol-3-phosphate acyltransferase", "GPAT", "glycerolphosphate acyltransferase", "glycerol-3-phosphate O-acyltransferase", "PlsB"] "MSGWPRIYYKLLNLPLSILVKSKSIPADPAPELGLDTSRPIMYVLPYNSKADLLTLRAQCLAHDLPDPLEPLEIDGTLLPRYVFIHGGPRVFTYYTPKEESIKLFHDYLDLHRSNPNLDVQMVPVSVMFGRAPGREKGEVNPPLRMLNGVQKFFAVLWLGRDSFVRFSPSVSLRRMADEHGTDKTIAQKLARVARMHFARQRLAAVGPRLPARQDLFNKLLASRAIAKAVEDEARSKKISHEKAQQNAIALMEEIAANFSYEMIRLTDRILGFTWNRLYQGINVHNAERVRQLAHDGHELVYVPCHRSHMDYLLLSYVLYHQGLVPPHIAAGINLNFWPAGPIFRRLGAFFIRRTFKGNKLYSTVFREYLGELFSRGYSVEYFVEGGRSRTGRLLDPKTGTLSMTIQAMLRGGTRPITLIPIYIGYEHVMEVGTYAKELRGATKEKESLPQMLRGLSKLRNLGQGYVNFGEPMPLMTYLNQHVPDWRESIDPIEAVRPAWLTPTVNNIAADLMVRINNAGAANAMNLCCTALLASRQRSLTREQLTEQLNCYLDLMRNVPYSTDSTVPSASASELIDHALQMNKFEVEKDTIGDIIILPREQAVLMTYYRNNIAHMLVLPSLMAAIVTQHRHISRDVLMEHVNVLYPMLKAELFLRWDRDELPDVIDALANEMQRQGLITLQDDELHINPAHSRTLQLLAAGARETLQRYAITFWLLSANPSINRGTLEKESRTVAQRLSVLHGINAPEFFDKAVFSSLVLTLRDEGYISDSGDAEPAETMKVYQLLAELITSDVRLTIESATQGEG" [] ["CCO-PM-BAC-NEG"] 1 [] {} 0 +"GLYCEROL-KIN-MONOMER" "glycerol kinase" ["GlpK"] "MTEKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAGWKKAVKRAMAWEEHDE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "GLYCOGEN-BRANCH-MONOMER" null ["GlgB"] "MSDRIDRDVINALIAGHFADPFSVLGMHKTTAGLEVRALLPDATDVWVIEPKTGRKLAKLECLDSRGFFSGVIPRRKNFFRYQLAVVWHGQQNLIDDPYRFGPLIQEMDAWLLSEGTHLRPYETLGAHADTMDGVTGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRKESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSDPYAFEAQMRPETASLICGLPEKVVQTEERKKANQFDAPISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDFALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYNYTENFVLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQRLVRDLNLTYRHHKAMHELDFDPYGFEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPVPRHDYRFGINQPGKWREILNTDSMHYHGSNAGNGGTVHSDEIASHGRQHSLSLTLPPLATIWLVREAE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "GLYCOGENSYN-MONOMER" "glycogen synthase" ["GlgA"] "MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "GLYCOPHOSPHORYL-MONOMER" "glycogen phosphorylase" ["GlgY", "GlgP"] "MNAPFTYSSPTLSVEALKHSIAYKLMFTIGKDPVVANKHEWLNATLFAVRDRLVERWLRSNRAQLSQETRQVYYLSMEFLIGRTLSNAMLSLGIYEDVQGALEAMGLNLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNIVNGSQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRIQQEGKKTRWIETEEILGVAYDQIIPGYDTDATNTLRLWSAQASSEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSSTIQDILSRHYQLHKTYDNLADKIAIHLNDTHPVLSIPEMMRLLIDEHQFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYFLKTLQEQYPNDTDLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLFADFAKIFPGRFTNVTNGVTPRRWLAVANPSLSAVLDEHLGRNWRTDLSLLNELQQHCDFPMVNHAVHQAKLENKKRLAEYIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFGGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLDHVGADNIFIFGNTAEEVEELRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEDPGRYRDLVDSLINFGDHYQVLADYRSYVDCQDKVDELYELQEEWTAKAMLNIANMGYFSSDRTIKEYADHIWHIDPVRL" [] ["CCO-CYTOSOL"] 0 [] {} 1 "GLYCPDIESTER-CYTO-MONOMER" "glycerophosphodiester phosphodiesterase UgpQ" ["UgpQ", "glycerophosphodiester phosphodiesterase, cytosolic"] "MSNWPYPRIVAHRGGGKLAPENTLASIDVGAKYGHKMIEFDAKLSKDGEIFLLHDDNLERTSNGWGVAGELNWQDLLRVDAGSWYSKMFKGEPLPLLSQVAERCREHGMMANIEIKPTTGTGPLTGKMVALAARELWAGMTPPLLSSFEIDALEAAQQAAPELPRGLLLDEWRDDWRELTARLGCVSIHLNHKLLNKARVMQLKDAGLRILVYTVNKPQRAAELLRWGVDCICTDAIDVIGPNFTAQ" [] ["CCO-CYTOSOL"] 1 [] {} 0 -"GLYCPDIESTER-PERI-MONOMER" "glycerophosphoryl diester phosphodiesterase GlpQ" ["GlpQ", "glycerophosphoryl diester phosphodiesterase, periplasmic"] "MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE" ["CCO-PERI-BAC"] ["CCO-VACUOLE", "CCO-PERI-BAC"] 0 [] {"CA+2": 1} 1 +"GLYCPDIESTER-PERI-MONOMER" "glycerophosphoryl diester phosphodiesterase GlpQ" ["GlpQ", "glycerophosphoryl diester phosphodiesterase, periplasmic"] "MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "GLYCRIBONUCSYN-MONOMER" null ["PurD"] "MKVLVIGNGGREHALAWKAAQSPLVETVFVAPGNAGTALEPALQNVAIGVTDIPALLDFAQNEKIDLTIVGPEAPLVKGVVDTFRAAGLKIFGPTAGAAQLEGSKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVTDDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQGNPKVIEFNCRFGDPETQPIMLRMKSDLVELCLAACESKLDEKTSEWDERASLGVVMAAGGYPGDYRTGDVIHGLPLEEVAGGKVFHAGTKLADDEQVVTNGGRVLCVTALGHTVAEAQKRAYALMTDIHWDDCFCRKDIGWRAIEREQN" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "GLYOCARBOLIG-MONOMER" "glyoxylate carboligase" ["Gcl"] "MAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFDVQVAEIEFDPDMYEPLPVYKPAASRMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQEMQKAGRLPCRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVILERVTNISMGSELDNVMEFEDIADNAADAPTETCFMHYE" [] ["CCO-CYTOSOL"] 1 [] {} 1 "GLYOHMETRANS-MONOMER" "serine hydroxymethyltransferase" ["GlyA", "SHMT"] "MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDSINDEAVIERIKGKVLDICARYPVYA" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -3342,7 +3342,7 @@ "GNTU-MONOMER" "low-affinity gluconate transporter" ["GntU"] "MTTLTLVLTAVGSVLLLLFLVMKARMHAFLALMVVSMGAGLFSGMPLDKIAATMEKGMGGTLGFLAVVVALGAMFGKILHETGAVDQIAVKMLKSFGHSRAHYAIGLAGLVCALPLFFEVAIVLLISVAFSMARHTGTNLVKLVIPLFAGVAAAAAFLVPGPAPMLLASQMNADFGWMILIGLCAAIPGMIIAGPLWGNFISRYVELHIPDDISEPHLGEGKMPSFGFSLSLILLPLVLVGLKTIAARFVPEGSTAYEWFEFIGHPFTAILVACLVAIYGLAMRQGMPKDKVMEICGHALQPAGIILLVIGAGGVFKQVLVDSGVGPALGEALTGMGLPIAITCFVLAAAVRIIQGSATVACLTAVGLVMPVIEQLNYSGAQMAALSICIAGGSIVVSHVNDAGFWLFGKFTGATEAETLKTWTMMETILGTVGAIVGMIAFQLLS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "GPH-MONOMER" null ["YhfE", "Gph", "HAD10"] "MNKFEDIRGVAFDLDGTLVDSAPGLAAAVDMALYALELPVAGEERVITWIGNGADVLMERALTWARQERATQRKTMGKPPVDDDIPAEEQVRILRKLFDRYYGEVAEEGTFLFPHVADTLGALQAKGLPLGLVTNKPTPFVAPLLEALDIAKYFSVVIGGDDVQNKKPHPDPLLLVAERMGIAPQQMLFVGDSRNDIQAAKAAGCPSVGLTYGYNYGEAIDLSQPDVIYQSINDLLPALGLPHSENQESKND" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "GPMA-MONOMER" "2,3-bisphosphoglycerate-dependent phosphoglycerate mutase" ["Gpm", "GpmA"] "MAVTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKLLKEEGYSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEEILELNIPTGVPLVYEFDENFKPLKRYYLGNADEIAAKAAAVANQGKAK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 -"GPT-MONOMER" "xanthine-guanine phsophoribosyltransferase" ["Gxu", "Gpp", "GlyD", "Gpt"] "MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPISGR" ["CCO-CYTOSOL"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 1 [] {"MG+2": 1} 1 +"GPT-MONOMER" "xanthine-guanine phsophoribosyltransferase" ["Gxu", "Gpp", "GlyD", "Gpt"] "MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPISGR" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 1 [] {"MG+2": 1} 1 "GRXB-MONOMER" "reduced glutaredoxin 2" ["GrxB", "GRX 2", "Grx2"] "MKLYIYDHCPYCLKARMIFGLKNIPVELHVLLNDDAETPTRMVGQKQVPILQKDDSRYMPESMDIVHYVDKLDGKPLLTGKRSPAIEEWLRKVNGYANKLLLPRFAKSAFDEFSTPAARKYFVDKKEASAGNFADLLAHSDGLIKNISDDLRALDKLIVKPNAVNGELSEDDIQLFPLLRNLTLVAGINWPSRVADYRDNMAKQTQINLLSSMAI" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "GRXC-MONOMER" "reduced glutaredoxin 3" ["YibM", "GrxC", "glutaredoxin 3"] "MANVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "GSAAMINOTRANS-MONOMER" "glutamate-1-semialdehyde 2,1-aminomutase" ["Gsa", "PopC", "HemL"] "MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTELVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPADFAKYTLTCTYNDLASVRAAFEQYPQEIACIIVEPVAGNMNCVPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYGVVPDLTCLGKIIGGGMPVGAFGGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHETLDELTTRLAEGLLEAAEEAGIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHMMLDEGVYLAPSAFEAGFMSVAHSMEDINNTIDAARRVFAKL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -3362,13 +3362,13 @@ "HCAA2-MONOMER" "putative 3-phenylpropionate/cinnamate dioxygenase subunit β" ["HcaA", "YfhV", "HcaB", "DigB", "HcaF", "HcaA2", "3-phenylpropionate dioxygenase, small subunit", "3-phenylpropionate dioxygenase, β subunit"] "MSAQVSLELHHRISQFLFHEASLLDDWKFRDWLAQLDEEIRYTMRTTVNAQTRDRRKGVQPPTTWIFNDTKDQLERRIARLETGMAWAEEPPSRTRHLISNCQISETDIPNVFAVRVNYLLYRAQKERDETFYVGTRFDKVRRLEDDNWRLLERDIVLDQAVITSHNLSVLF" [] ["CCO-CYTOSOL"] 0 [] {} 1 "HCAC-MONOMER" "putative 3-phenylpropionate/cinnamate dioxygenase ferredoxin subunit" ["YfhW", "PhdB", "HcaC", "3-phenylpropionate dioxygenase, predicted ferredoxin subunit"] "MNRIYACPVADVPEGEALRIDTSPVIALFNVGGEFYAINDRCSHGNASMSEGYLEDDATVECPLHAASFCLKTGKALCLPATDPLTTYPVHVEGGDIFIDLPEAQP" [] [] 0 [] {"CPD-6": 1} 1 "HCAD-MONOMER" "putative 3-phenylpropionate/cinnamate dioxygenase ferredoxin reductase subunit" ["YfhY", "PhdA", "HcaD", "3-phenylpropionate dioxygenase, predicted ferredoxin reductase subunit"] "MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIIGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISANEQLAREANLDTANGIVIDEACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGDMRGDDWLCRGNPETQKAIWFNLQNGVLIGAVTLNQGREIRPIRKWIQSGKTFDAKLLIDENIALKSL" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"HCAT-MONOMER" "putative 3-phenylpropionate transporter" ["HcaT", "YfhS"] "MVLQSTRWLALGYFTYFFSYGIFLPFWSVWLKGIGLTPETIGLLLGAGLVARFLGSLLIAPRVSDPSRLISALRVLALLTLLFAVAFWAGAHVAWLMLVMIGFNLFFSPLVPLTDALANTWQKQFPLDYGKVRLWGSVAFVIGSALTGKLVTMFDYRVILALLTLGVASMLLGFLIRPTIQPQGASRQQESTGWSAWLALVRQNWRFLACVCLLQGAHAAYYGFSAIYWQAAGYSASAVGYLWSLGVVAEVIIFALSNKLFRRCSARDMLLISAICGVVRWGIMGATTALPWLIVVQILHCGTFTVCHLAAMRYIAARQGSEVIRLQAVYSAVAMGGSIAIMTVFAGFLYQYLGHGVFWVMALVALPAMFLRPKVVPSC" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"HCAT-MONOMER" "putative 3-phenylpropionate transporter" ["HcaT", "YfhS"] "MVLQSTRWLALGYFTYFFSYGIFLPFWSVWLKGIGLTPETIGLLLGAGLVARFLGSLLIAPRVSDPSRLISALRVLALLTLLFAVAFWAGAHVAWLMLVMIGFNLFFSPLVPLTDALANTWQKQFPLDYGKVRLWGSVAFVIGSALTGKLVTMFDYRVILALLTLGVASMLLGFLIRPTIQPQGASRQQESTGWSAWLALVRQNWRFLACVCLLQGAHAAYYGFSAIYWQAAGYSASAVGYLWSLGVVAEVIIFALSNKLFRRCSARDMLLISAICGVVRWGIMGATTALPWLIVVQILHCGTFTVCHLAAMRYIAARQGSEVIRLQAVYSAVAMGGSIAIMTVFAGFLYQYLGHGVFWVMALVALPAMFLRPKVVPSC" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "HEMEOSYN-MONOMER" null ["CyoE"] "MMFKQYLQVTKPGIIFGNLISVIGGFLLASKGSIDYPLFIYTLVGVSLVVASGCVFNNYIDRDIDRKMERTKNRVLVKGLISPAVSLVYATLLGIAGFMLLWFGANPLACWLGVMGFVVYVGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYCAVTGEFDSGAAILLAIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVVKGISVAKNHITLYIIAFAVATLMLSLGGYAGYKYLVVAAAVSVWWLGMALRGYKVADDRIWARKLFGFSIIAITALSVMMSVDFMVPDSHTLLAAVW" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "HEMN-MONOMER" "coproporphyrinogen III dehydrogenase" ["YihJ", "HemN"] "MSVQQIDWDLALIQKYNYSGPRYTSYPTALEFSEDFGEQAFLQAVARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGDCYAQNQKELKQYYQQVDEQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYAPIEKQWDLHFADYFAEDLKLLAPLAKDGLVDVDEKGIQVTAKGRLLIRNICMCFDTYLRQKARMQQFSRVI" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 0 -"HEMX-MONOMER" "PF04375 family protein HemX" ["HemX"] "MTEQEKTSAVVEETREAVDTTSQPVATEKKSKNNTALILSAVAIAIALAAGIGLYGWGKQQAVNQTATSDALANQLTALQKAQESQKAELEGIIKQQAAQLKQANRQQETLAKQLDEVQQKVATISGSDAKTWLLAQADFLVKLAGRKLWSDQDVTTAAALLKSADASLADMNDPSLITVRRAITDDIASLSAVSQVDYDGIILKLNQLSNQVDNLRLADNDSDGSPMDSDGEELSSSISEWRINLQKSWQNFMDNFITIRRRDDTAVPLLAPNQDIYLRENIRSRLLVAAQAVPRHQEETYRQALENVSTWVRAYYDTDDATTKAFLDEVDQLSQQNISMDLPETLQSQAMLEKLMQTRVRNLLAQPAAGTTEAKPAPAPQADTPAAAPQGE" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"HEMX-MONOMER" "PF04375 family protein HemX" ["HemX"] "MTEQEKTSAVVEETREAVDTTSQPVATEKKSKNNTALILSAVAIAIALAAGIGLYGWGKQQAVNQTATSDALANQLTALQKAQESQKAELEGIIKQQAAQLKQANRQQETLAKQLDEVQQKVATISGSDAKTWLLAQADFLVKLAGRKLWSDQDVTTAAALLKSADASLADMNDPSLITVRRAITDDIASLSAVSQVDYDGIILKLNQLSNQVDNLRLADNDSDGSPMDSDGEELSSSISEWRINLQKSWQNFMDNFITIRRRDDTAVPLLAPNQDIYLRENIRSRLLVAAQAVPRHQEETYRQALENVSTWVRAYYDTDDATTKAFLDEVDQLSQQNISMDLPETLQSQAMLEKLMQTRVRNLLAQPAAGTTEAKPAPAPQADTPAAAPQGE" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "HISJ-MONOMER" "histidine ABC transporter periplasmic binding protein" [] "MKKLVLSLSLVLAFSSATAAFAAIPQNIRIGTDPTYAPFESKNSQGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQEIAFTDKLYAADSRLVVAKNSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIEIVSYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDFDVYGG" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "HISM-MONOMER" "lysine/arginine/ornithine ABC transporter / histidine ABC transporter, membrane subunit HisM" [] "MIEILHEYWKPLLWTDGYRFTGVAITLWLLILSVVIGGVLALFLAIGRVSSNKYIQFPIWLFTYIFRGTPLYVQLLVFYSGMYTLEIVKGTEFLNAFFRSGLNCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSTFKMYRCIILPSALRIALPAYSNEVILMLHSTALAFTATVPDLLKIARDINAATYQPFTAFGIAAVLYLIISYVLISLFRRAEKRWLQHVKPSSTH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"HISP-MONOMER" "lysine/arginine/ornithine ABC transporter / histidine ABC transporter, ATP binding subunit" [] "MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGAPEQLFGNPQSPRLQRFLKGSLK" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"HISP-MONOMER" "lysine/arginine/ornithine ABC transporter / histidine ABC transporter, ATP binding subunit" [] "MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGAPEQLFGNPQSPRLQRFLKGSLK" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "HISQ-MONOMER" "lysine/arginine/ornithine ABC transporter / histidine ABC transporter, membrane subunit HisQ" ["HisQ"] "MLYGFSGVILQGALVTLELAISSVVLAVIIGLIGAGGKLSQNRLSGLIFEGYTTLIRGVPDLVLMLLIFYGLQIALNTVTEAMGVGQIDIDPMVAGIITLGFIYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPSMMRYALPGIGNNWQVILKSTALVSLLGLEDVVKATQLAGKSTWEPFYFAIVCGVIYLVFTTVSNGVLLFLERRYSVGVKRADL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "HISS-MONOMER" "histidine—tRNA ligase" ["HisS", "HisRS"] "MAKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTLLG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "HISTCYCLOPRATPPHOS" "putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase" ["HisE", "HisI"] "MLTEQQRRELDWEKTDGLMPVIVQHAVSGEVLMLGYMNPEALDKTLESGKVTFFSRTKQRLWTKGETSGNFLNVVSIAPDCDNDTLLVLANPIGPTCHKGTSSCFGDTAHQWLFLYQLEQLLAERKSADPETSYTAKLYASGTKRIAQKVGEEGVETALAATVHDRFELTNEASDLMYHLLVLLQDQGLDLTTVIENLRKRHQ" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -3377,24 +3377,24 @@ "HMP-KIN-MONOMER" "protein/nucleic acid deglycase 3" ["YajL", "ThiJ", "chaperone, protecting proteins in response to oxidative stress", "Maillard deglycase 3"] "MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMAAGIYNYYE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "HMP-P-KIN-MONOMER" "bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase" ["ThiJ", "ThiA", "ThiD"] "MKRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAQNTRGVQSVYRIEPDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRYQIQNVVLDTVMLAKSGDPLLSPSAVATLRSRLLPQVSLITPNLPEAAALLDAPHARTEQEMLEQGRSLLAMGCGAVLMKGGHLDDEQSPDWLFTREGEQRFTAPRIMTKNTHGTGCTLSAALAALRPRHTNWADTVQEAKSWLSSALAQADTLEVGHGIGPVHHFHAWW" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "HOLO-ACP-SYNTH-MONOMER" "holo-[acyl-carrier-protein] synthase" ["AcpS", "Dpj", "AcpSholo"] "MAILGLGTDIVEIARIEAVIARSGDRLARRVLSDNEWAIWKTHHQPVRFLAKRFAVKEAAAKAFGTGIRNGLAFNQFEVFNDELGKPRLRLWGEALKLAEKLGVANMHVTLADERHYACATVIIES" [] ["CCO-CYTOSOL"] 1 [] {"MG+2": 1} 1 -"HOMOCYSMET-MONOMER" null ["MetE"] "MTILNHTLGFPRVGLRRELKKAQESYWAGNSTREELLAVGRELRARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNKDGSVDIDTLFRIGRGRAPTGEPAAAAEMTKWFNTNYHYMVPEFVKGQQFKLTWTQLLDEVDEALALGHKVKPVLLGPVTWLWLGKVKGEQFDRLSLLNDILPVYQQVLAELAKRGIEWVQIDEPALVLELPQAWLDAYKPAYDALQGQVKLLLTTYFEGVTPNLDTITALPVQGLHVDLVHGKDDVAELHKRLPSDWLLSAGLINGRNVWRADLTEKYAQIKDIVGKRDLWVASSCSLLHSPIDLSVETRLDAEVKSWFAFALQKCHELALLRDALNSGDTAALAEWSAPIQARRHSTRVHNPAVEKRLAAITAQDSQRANVYEVRAEAQRARFKLPAWPTTTIGSFPQTTEIRTLRLDFKKGNLDANNYRTGIAEHIKQAIVEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGWVQSYGSRCVKPPIVIGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLQWGVEAFRINAAVAKDDTQIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMELLESFEEFDYPNEIGPGVYDIHSPNVPSVEWIEALLKKAAKRIPAERLWVNPDCGLKTRGWPETRAALANMVQAAQNLRRG" ["CCO-CYTOSOL"] ["CCO-EXTRACELLULAR", "CCO-CYTOSOL"] 1 [] {"ZN+2": 1} 0 +"HOMOCYSMET-MONOMER" null ["MetE"] "MTILNHTLGFPRVGLRRELKKAQESYWAGNSTREELLAVGRELRARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNKDGSVDIDTLFRIGRGRAPTGEPAAAAEMTKWFNTNYHYMVPEFVKGQQFKLTWTQLLDEVDEALALGHKVKPVLLGPVTWLWLGKVKGEQFDRLSLLNDILPVYQQVLAELAKRGIEWVQIDEPALVLELPQAWLDAYKPAYDALQGQVKLLLTTYFEGVTPNLDTITALPVQGLHVDLVHGKDDVAELHKRLPSDWLLSAGLINGRNVWRADLTEKYAQIKDIVGKRDLWVASSCSLLHSPIDLSVETRLDAEVKSWFAFALQKCHELALLRDALNSGDTAALAEWSAPIQARRHSTRVHNPAVEKRLAAITAQDSQRANVYEVRAEAQRARFKLPAWPTTTIGSFPQTTEIRTLRLDFKKGNLDANNYRTGIAEHIKQAIVEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGWVQSYGSRCVKPPIVIGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLQWGVEAFRINAAVAKDDTQIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMELLESFEEFDYPNEIGPGVYDIHSPNVPSVEWIEALLKKAAKRIPAERLWVNPDCGLKTRGWPETRAALANMVQAAQNLRRG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"ZN+2": 1} 0 "HOMOCYSMETB12-MONOMER" "cobalamin-dependent methionine synthase" ["MetH"] "MSSKVEQLRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFADWPCDLKGNNDLLVLSKPEVIAAIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINFAAAKLARACADEWTARTPEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYRESTKALVEGGADLILIETVFDTLNAKAAVFAVKTEFEALGVELPIMISGTITDASGRTLSGQTTEAFYNSLRHAEALTFGLNCALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYDLDADTMAKQIREWAQAGFLNIVGGCCGTTPQHIAAMSRAVEGLAPRKLPEIPVACRLSGLEPLNIGEDSLFVNVGERTNVTGSAKFKRLIKEEKYSEALDVARQQVENGAQIIDINMDEGMLDAEAAMVRFLNLIAGEPDIARVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMKEGVDAFIHHAKLLRRYGAAVVVMAFDEQGQADTRARKIEICRRAYKILTEEVGFPPEDIIFDPNIFAVATGIEEHNNYAQDFIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAGQLAIYDDLPAELRDAVEDVILNRRDDGTERLLELAEKYRGSKTDDTANAQQAEWRSWEVNKRLEYSLVKGITEFIEQDTEEARQQATRPIEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFIEASKEQGKTNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNASRTVGVVAALLSDTQRDDFVARTRKEYETVRIQHGRKKPRTPPVTLEAARDNDFAFDWQAYTPPVAHRLGVQEVEASIETLRNYIDWTPFFMTWSLAGKYPRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNPRGVVGLFPANRVGDDIEIYRDETRTHVINVSHHLRQQTEKTGFANYCLADFVAPKLSGKADYIGAFAVTGGLEEDALADAFEAQHDDYNKIMVKALADRLAEAFAEYLHERVRKVYWGYAPNENLSNEELIRENYQGIRPAPGYPACPEHTEKATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQVEDYARRKGMSVTEVERWLAPNLGYDAD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"ADENOSYLCOBALAMIN": 1, "MG+2": 1, "ZN+2": 1} 0 "HOMOSERKIN-MONOMER" "homoserine kinase" ["ThrB"] "MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAETFSLNNLGRFADKLPSEPRENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDIISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPELAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPETAQRVADWLGKNYLQNQEGFVHICRLDTAGARVLEN" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "HOMSUCTRAN-MONOMER" "homoserine O-succinyltransferase" ["MetA"] "MPIRVPDELPAVNFLREENVFVMTTSRASGQEIRPLKVLILNLMPKKIETENQFLRLLSNSPLQVDIQLLRIDSRESRNTPAEHLNNFYCNFEDIQDQNFDGLIVTGAPLGLVEFNDVAYWPQIKQVLEWSKDHVTSTLFVCWAVQAALNILYGIPKQTRTEKLSGVYEHHILHPHALLTRGFDDSFLAPHSRYADFPAALIRDYTDLEILAETEEGDAYLFASKDKRIAFVTGHPEYDAQTLAQEFFRDVEAGLDPDVPYNYFPHNDPQNTPRASWRSHGNLLFTNWLNYYVYQITPYDLRHMNPTLD" [] ["CCO-CYTOSOL"] 1 [] {} 1 "HRSA-MONOMER" null ["HrsA", "EIIMngA", "EIIHrsA", "EIImannosylglycerate", "Enzyme IImannosylglycerate", "Frx"] "MVLFYRAHWRDYKNDQVRIMMNLTTLTHRDALCLNARFTSREEAIHALTQRLAALGKISSTEQFLEEVYRRESLGPTALGEGLAVPHGKTAAVKEAAFAVATLSEPLQWEGVDGPEAVDLVVLLAIPPNEAGTTHMQLLTALTTRLADDEIRARIQSATTPDELLSALDDKGGTQPSASFSNAPTIVCVTACPAGIAHTYMAAEYLEKAGRKLGVNVYVEKQGANGIEGRLTADQLNSATACIFAAEVAIKESERFNGIPALSVPVAEPIRHAEALIQQALTLKRSDETRTVQQDTQPVKSVKTELKQALLSGISFAVPLIVAGGTVLAVAVLLSQIFGLQDLFNEENSWLWMYRKLGGGLLGILMVPVLAAYTAYSLADKPALAPGFAAGLAANMIGSGFLGAVVGGLIAGYLMRWVKNHLRLSSKFNGFLTFYLYPVLGTLGAGSLMLFVVGEPVAWINNSLTAWLNGLSGSNALLLGAILGFMCSFDLGGPVNKAAYAFCLGAMANGVYGPYAIFASVKMVSAFTVTASTMLAPRLFKEFEIETGKSTWLLGLAGITEGAIPMAIEDPLRVIGSFVLGSMVTGAIVGAMNIGLSTPGAGIFSLFLLHDNGAGGVMAAIGWFGAALVGAAISTAILLMWRRHAVKHGNYLTDGVMP" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "HYAA-MONOMER" "hydrogenase 1 small subunit" ["HyaA", "hydrogenase 1 S subunit", "hydrogenase 1 β subunit", "hydrogenase 1 subunit HyaA"] "MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQQPTETEHQPGNEDKQA" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {"CPD-7": 2, "3FE-4S": 1} 1 -"HYAB-MONOMER" "hydrogenase 1 large subunit" ["HyaB", "hydrogenase 1 α subunit"] "MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR" ["CCO-PM-BAC-NEG", "CCO-PERI-BAC", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC", "CCO-MEMBRANE"] 0 [] {"NI+2": 1} 1 +"HYAB-MONOMER" "hydrogenase 1 large subunit" ["HyaB", "hydrogenase 1 α subunit"] "MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR" ["CCO-PM-BAC-NEG", "CCO-PERI-BAC", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {"NI+2": 1} 1 "HYAC-MONOMER" "hydrogenase 1 cytochrome b subunit" ["CybH", "HyaC", "hydrogenase 1 - B subunit", "hydrogenase 1 - γ subunit"] "MQQKSDNVVSHYVFEAPVRIWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFVGNRYSRELFIVPVWRKSWWQGVWYEIRWYLFLAKRPSADIGHNPIAQAAMFGYFLMSVFMIITGFALYSEHSQYAIFAPFRYVVEFFYWTGGNSMDIHSWHRLGMWLIGAFVIGHVYMALREDIMSDDTVISTMVNGYRSHKFGKISNKERS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"Heme-b": 1} 1 -"HYBA-MONOMER" "hydrogenase 2 iron-sulfur protein" ["HydL", "HybA"] "MNRRNFIKAASCGALLTGALPSVSHAAAENRPPIPGSLGMLYDSTLCVGCQACVTKCQDINFPERNPQGEQTWSNNDKLSPYTNNIIQVWTSGTGVNKDQEENGYAYIKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDYNNPFGALHKCELCNQKGVERLDKGGLPGCVEVCPAGAVIFGTREELMAEAKKRLALKPGSEYHYPRQTLKSGDTYLHTVPKYYPHLYGEKEGGGTQVLVLTGVPYENLDLPKLDDLSTGARSENIQHTLYKGMMLPLAVLAGLTVLVRRNTKNDHHDGGDDHES" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {"CPD-7": 4} 1 -"HYBC-MONOMER" "hydrogenase 2 large subunit" ["HybC", "hydrogenase 2 α subunit"] "MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKVL" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 1 [] {"NI+2": 1} 1 -"HYCBSMALL-MONOMER" "hydrogenase 3 iron-sulfur protein HycB" ["HevB", "HycB", "formate hydrogenlyase subunit 2"] "MNRFVIADSTLCIGCHTCEAACSETHRQHGLQSMPRLRVMLNEKESAPQLCHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEFSGSRPLDIPANANTPKAPPAPPAPARVSTLLDWVPGIRAIAVKCDLCSFDEQGPACVRMCPTKALHLVDNTDIARVSKRKRELTFNTDFGDLTLFQQAQSGEAK" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 4} 1 -"HYCC-MONOMER" "hydrogenase 3 membrane subunit HycC" ["HevC", "HycC", "Ant-2", "formate hydrogenlyase subunit 3"] "MSAISLINSGVAWFVAAAVLAFLFSFQKALSGWIAGIGGAVGSLYTAAAGFTVLTGAVGVSGALSLVSYDVQISPLNAIWLITLGLCGLFVSLYNIDWHRHAQVKCNGLQINMLMAAAVCAVIASNLGMFVVMAEIMALCAVFLTSNSKEGKLWFALGRLGTLLLAIACWLLWQRYGTLDLRLLDMRMQQLPLGSDIWLLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVVMKIGLLGILTLSLLGGNAPLWWGIALLVLGMITAFVGGLYALVEHNIQRLLAYHTLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNSGAFVARLLGPLLAVGLAITGALAVMCMAKVYGVTFLGAPRTKEAENATCAPLLMSVSVVALAICCVIGGVAAPWLLPMLSAAVPLPLEPANTTVSQPMITLLLIACPLLPFIIMAICKGDRLPSRSRGAAWVCGYDHEKSMVITAHGFAMPVKQAFAPVLKLRKWLNPVSLVPGWQCEGSALLFRRMALVELAVLVVIIVSRGA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"HYBA-MONOMER" "hydrogenase 2 [Fe-S] protein" ["HydL", "HybA", "hydrogenase 2 iron-sulfur protein"] "MNRRNFIKAASCGALLTGALPSVSHAAAENRPPIPGSLGMLYDSTLCVGCQACVTKCQDINFPERNPQGEQTWSNNDKLSPYTNNIIQVWTSGTGVNKDQEENGYAYIKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDYNNPFGALHKCELCNQKGVERLDKGGLPGCVEVCPAGAVIFGTREELMAEAKKRLALKPGSEYHYPRQTLKSGDTYLHTVPKYYPHLYGEKEGGGTQVLVLTGVPYENLDLPKLDDLSTGARSENIQHTLYKGMMLPLAVLAGLTVLVRRNTKNDHHDGGDDHES" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {"CPD-7": 4} 1 +"HYBC-MONOMER" "hydrogenase 2 large subunit" ["HybC", "hydrogenase 2 α subunit"] "MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKVL" [] ["CCO-PM-BAC-NEG"] 1 [] {"NI+2": 1} 1 +"HYCBSMALL-MONOMER" "hydrogenase 3 [Fe-S] protein HycB" ["HevB", "HycB", "formate hydrogenlyase subunit 2", "hydrogenase 3 iron-sulfur protein HycB"] "MNRFVIADSTLCIGCHTCEAACSETHRQHGLQSMPRLRVMLNEKESAPQLCHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEFSGSRPLDIPANANTPKAPPAPPAPARVSTLLDWVPGIRAIAVKCDLCSFDEQGPACVRMCPTKALHLVDNTDIARVSKRKRELTFNTDFGDLTLFQQAQSGEAK" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 4} 1 +"HYCC-MONOMER" "hydrogenase 3 membrane subunit HycC" ["HevC", "HycC", "Ant-2", "formate hydrogenlyase subunit 3"] "MSAISLINSGVAWFVAAAVLAFLFSFQKALSGWIAGIGGAVGSLYTAAAGFTVLTGAVGVSGALSLVSYDVQISPLNAIWLITLGLCGLFVSLYNIDWHRHAQVKCNGLQINMLMAAAVCAVIASNLGMFVVMAEIMALCAVFLTSNSKEGKLWFALGRLGTLLLAIACWLLWQRYGTLDLRLLDMRMQQLPLGSDIWLLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVVMKIGLLGILTLSLLGGNAPLWWGIALLVLGMITAFVGGLYALVEHNIQRLLAYHTLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNSGAFVARLLGPLLAVGLAITGALAVMCMAKVYGVTFLGAPRTKEAENATCAPLLMSVSVVALAICCVIGGVAAPWLLPMLSAAVPLPLEPANTTVSQPMITLLLIACPLLPFIIMAICKGDRLPSRSRGAAWVCGYDHEKSMVITAHGFAMPVKQAFAPVLKLRKWLNPVSLVPGWQCEGSALLFRRMALVELAVLVVIIVSRGA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "HYCD-MONOMER" "hydrogenase 3 membrane subunit HycD" ["HevD", "HycD", "Ant-3", "Ant-5", "formate hydrogenlyase subunit 4"] "MSVLYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYRDIIKLLGRQSVGPDASGWVFRLTPYVMVGVMLTIATALPVVTVGSPLPQLGDLITLLYLFAIARFFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNITDTVYHWPLSQSIPLVLALCACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMKWGISLKQLVVLQMFVGVFIPWGQMETFTAGGLLLALVIAIVKLVVGVLVIALFENSMARLRLDITPRITWAGFGFAFLAFVSLLAA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "HYCELARGE-MONOMER" "hydrogenase 3 large subunit" ["HevE", "HycE", "Ant-1", "formate hydrogenlyase subunit 5"] "MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNSPLK" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"HYCF-MONOMER" "hydrogenase 3 iron-sulfur protein HycF" ["HevF", "HycF", "formate hydrogenlyase subunit 6"] "MFTFIKKVIKTGTATSSYPLEPIAVDKNFRGKPEQNPQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGHCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRPFAVQKEIDYAIALLKHNGDSRAENHRESFETCPECKRQKCLVPSDRIELTRHMKEAI" [] ["CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {"CPD-7": 2} 1 -"HYCG-MONOMER" "hydrogenase 3 iron-sulfur protein HycG" ["HevG", "HycG", "hydrogenase 3 small subunit", "formate hydrogenlyase subunit 7"] "MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 1 +"HYCF-MONOMER" "hydrogenase 3 [Fe-S] protein HycF" ["HevF", "HycF", "formate hydrogenlyase subunit 6", "hydrogenase 3 iron-sulfur protein HycF"] "MFTFIKKVIKTGTATSSYPLEPIAVDKNFRGKPEQNPQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGHCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRPFAVQKEIDYAIALLKHNGDSRAENHRESFETCPECKRQKCLVPSDRIELTRHMKEAI" [] ["CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {"CPD-7": 2} 1 +"HYCG-MONOMER" "hydrogenase 3 [Fe-S] protein HycG" ["HevG", "HycG", "hydrogenase 3 small subunit", "formate hydrogenlyase subunit 7", "hydrogenase 3 iron-sulfur protein HycG"] "MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 1 "HYDG-MONOMER" "DNA-binding transcriptional activator ZraR" ["HydG", "ZraR response regulator"] "MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"HYDH-MONOMER" "sensor histidine kinase ZraS" ["HydH", "ZraS"] "MRFMQRSKDSLAKWLSAILPVVIVGLVGLFAVTVIRDYGRASEADRQALLEKGNVLIRALESGSRVGMGMRMHHVQQQALLEEMAGQPGVLWFAVTDAQGIIILHSDPDKVGRALYSPDEMQKLKPEENSRWRLLGKTETTPALEVYRLFQPMSAPWRHGMHNMPRCNGKAVPQVDAQQAIFIAVDASDLVATQSGEKRNTLIILFALATVLLASVLSFFWYRRYLRSRQLLQDEMKRKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQLDAIFTPYFTTKAEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLPVNITRKDPQG" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"HYDH-MONOMER" "sensor histidine kinase ZraS" ["HydH", "ZraS"] "MRFMQRSKDSLAKWLSAILPVVIVGLVGLFAVTVIRDYGRASEADRQALLEKGNVLIRALESGSRVGMGMRMHHVQQQALLEEMAGQPGVLWFAVTDAQGIIILHSDPDKVGRALYSPDEMQKLKPEENSRWRLLGKTETTPALEVYRLFQPMSAPWRHGMHNMPRCNGKAVPQVDAQQAIFIAVDASDLVATQSGEKRNTLIILFALATVLLASVLSFFWYRRYLRSRQLLQDEMKRKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQLDAIFTPYFTTKAEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLPVNITRKDPQG" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "HYDROPEROXIDI-MONOMER" "catalase/hydroperoxidase HPI" ["KatG", "hydroperoxidase I"] "MSTSDDIHNTTATGKCPFHQGGHDQSAGAGTTTRDWWPNQLRVDLLNQHSNRSNPLGEDFDYRKEFSKLDYYGLKKDLKALLTESQPWWPADWGSYAGLFIRMAWHGAGTYRSIDGRGGAGRGQQRFAPLNSWPDNVSLDKARRLLWPIKQKYGQKISWADLFILAGNVALENSGFRTFGFGAGREDVWEPDLDVNWGDEKAWLTHRHPEALAKAPLGATEMGLIYVNPEGPDHSGEPLSAAAAIRATFGNMGMNDEETVALIAGGHTLGKTHGAGPTSNVGPDPEAAPIEEQGLGWASTYGSGVGADAITSGLEVVWTQTPTQWSNYFFENLFKYEWVQTRSPAGAIQFEAVDAPEIIPDPFDPSKKRKPTMLVTDLTLRFDPEFEKISRRFLNDPQAFNEAFARAWFKLTHRDMGPKSRYIGPEVPKEDLIWQDPLPQPIYNPTEQDIIDLKFAIADSGLSVSELVSVAWASASTFRGGDKRGGANGARLALMPQRDWDVNAAAVRALPVLEKIQKESGKASLADIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDIEMFELLEPIADGFRNYRARLDVSTTESLLIDKAQQLTLTAPEMTALVGGMRVLGANFDGSKNGVFTDRVGVLSNDFFVNLLDMRYEWKATDESKELFEGRDRETGEVKFTASRADLVFGSNSVLRAVAEVYASSDAHEKFVKDFVAAWVKVMNLDRFDLL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"Heme-b": 1} 1 "HYDROPEROXIDII-MONOMER" "catalase HPII" ["KatE"] "MSQHNEKNPHQHQSPLHDSSEAKPGMDSLAPEDGSHRPAAEPTPPGAQPTAPGSLKAPDTRNEKLNSLEDVRKGSENYALTTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNTPIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELWEAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFFAENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYHNFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSPSFGEYYSHPRLFWLSQTPFEQRHIVDGFSFELSKVVRPYIRERVVDQLAHIDLTLAQAVAKNLGIELTDDQLNITPPPDVNGLKKDPSLSLYAIPDGDVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNIADIADNGDANYYLMEAYKHLKPIALAGDARKFKATIKIADQGEEGIVEADSADGSFMDELLTLMAAHRVWSRIPKIDKIPA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"PROTOHEME": 1} 1 "HYPOXANPRIBOSYLTRAN-MONOMER" "hypoxanthine phosphoribosyltransferase" ["Hpt"] "MKHTVEVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPSRREVNVPVEFIGFSIPDEFVVGYGIDYAQRYRHLPYIGKVILLDE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 @@ -3405,33 +3405,33 @@ "IMP-DEHYDROG-MONOMER" "inosine 5'-monophosphate dehydrogenase" ["GuaR", "GuaB"] "MLRIAKEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPMLSAAMDTVTEARLAIALAQEGGIGFIHKNMSIERQAEEVRRVKKHESGVVTDPQTVLPTTTLREVKELTERNGFAGYPVVTEENELVGIITGRDVRFVTDLNQPVSVYMTPKERLVTVREGEAREVVLAKMHEKRVEKALVVDDEFHLIGMITVKDFQKAERKPNACKDEQGRLRVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGGNVATAAGARALAEAGCSAVKVGIGPGSICTTRIVTGVGVPQITAVADAVEALEGTGIPVIADGGIRFSGDIAKAIAAGASAVMVGSMLAGTEESPGEIELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSDNAADKLVPEGIEGRVAYKGRLKEIIHQQMGGLRSCMGLTGCGTIDELRTKAEFVRISGAGIQESHVHDVTITKESPNYRLGS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"K+": 1} 1 "INORGPYROPHOSPHAT-MONOMER" "inorganic pyrophosphatase" ["Ppa"] "MSLLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEIVASFERAKNK" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MG+2": 2} 1 "IPPISOM-MONOMER" "isopentenyl-diphosphate Δ-isomerase" ["YgfV", "Idi"] "MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGIDATPWAFSPWMVMQATNREARKRLSAFTQLK" [] ["CCO-CYTOSOL"] 0 [] {"MN+2": 1, "MG+2": 1} 0 -"ISOCIT-LYASE-MONOMER" "isocitrate lyase" ["Icl", "AceA"] "MKTRTQQIEELQKEWTQPRWEGITRPYSAEDVVKLRGSVNPECTLAQLGAAKMWRLLHGESKKGYINSLGALTGGQALQQAKAGIEAVYLSGWQVAADANLAASMYPDQSLYPANSVPAVVERINNTFRRADQIQWSAGIEPGDPRYVDYFLPIVADAEAGFGGVLNAFELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARLAADVTGVPTLLVARTDADAADLITSDCDPYDSEFITGERTSEGFFRTHAGIEQAISRGLAYAPYADLVWCETSTPDLELARRFAQAIHAKYPGKLLAYNCSPSFNWQKNLDDKTIASFQQQLSDMGYKFQFITLAGIHSMWFNMFDLANAYAQGEGMKHYVEKVQQPEFAAAKDGYTFVSHQQEVGTGYFDKVTTIIQGGTSSVTALTGSTEESQF" ["CCO-CYTOSOL"] ["CCO-GLYOXYSOME", "CCO-CYTOSOL"] 1 [] {"MG+2": 1} 1 +"ISOCIT-LYASE-MONOMER" "isocitrate lyase" ["Icl", "AceA"] "MKTRTQQIEELQKEWTQPRWEGITRPYSAEDVVKLRGSVNPECTLAQLGAAKMWRLLHGESKKGYINSLGALTGGQALQQAKAGIEAVYLSGWQVAADANLAASMYPDQSLYPANSVPAVVERINNTFRRADQIQWSAGIEPGDPRYVDYFLPIVADAEAGFGGVLNAFELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARLAADVTGVPTLLVARTDADAADLITSDCDPYDSEFITGERTSEGFFRTHAGIEQAISRGLAYAPYADLVWCETSTPDLELARRFAQAIHAKYPGKLLAYNCSPSFNWQKNLDDKTIASFQQQLSDMGYKFQFITLAGIHSMWFNMFDLANAYAQGEGMKHYVEKVQQPEFAAAKDGYTFVSHQQEVGTGYFDKVTTIIQGGTSSVTALTGSTEESQF" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MG+2": 1} 1 "ISOCITDEH-SUBUNIT" "isocitrate dehydrogenase" ["IcdE", "IcdA", "Icd"] "MESKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMDGAKLLKCSEFGDAIIENM" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 -"KCH-MONOMER" "K+ channel Kch" ["Kch"] "MSHWATFKQTATNLWVTLRHDILALAVFLNGLLIFKTIYGMSVNLLDIFHIKAFSELDLSLLANAPLFMLGVFLVLNSIGLLFRAKLAWAISIILLLIALIYTLHFYPWLKFSIGFCIFTLVFLLILRKDFSHSSAAAGTIFAFISFTTLLFYSTYGALYLSEGFNPRIESLMTAFYFSIETMSTVGYGDIVPVSESARLFTISVIISGITVFATSMTSIFGPLIRGGFNKLVKGNNHTMHRKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLNGEEINNDMLVSMLLNSGHGIFSDNDELETKADSKESAQK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"KCH-MONOMER" "K+ channel Kch" ["Kch"] "MSHWATFKQTATNLWVTLRHDILALAVFLNGLLIFKTIYGMSVNLLDIFHIKAFSELDLSLLANAPLFMLGVFLVLNSIGLLFRAKLAWAISIILLLIALIYTLHFYPWLKFSIGFCIFTLVFLLILRKDFSHSSAAAGTIFAFISFTTLLFYSTYGALYLSEGFNPRIESLMTAFYFSIETMSTVGYGDIVPVSESARLFTISVIISGITVFATSMTSIFGPLIRGGFNKLVKGNNHTMHRKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLNGEEINNDMLVSMLLNSGHGIFSDNDELETKADSKESAQK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "KDGALDOL-MONOMER" "α-dehydro-β-deoxy-D-glucarate aldolase" ["YhaF", "GarL"] "MNNDVFPNKFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAPVEADARRYLEWGATFVAVGSDLGVFRSATQKLADTFKK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "KDGT-MONOMER" "2-dehydro-3-deoxy-D-gluconate:H+ symporter" ["KdgT"] "MQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVPILAVWFFCMGASIKLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASFEPHVFVGAVLPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGIPLIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATAVIVTSILVPILTSIWSRKVKARAAKIEILGTVK" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "KDO-8PSYNTH-MONOMER" "3-deoxy-D-manno-octulosonate 8-phosphate synthase" ["KdsA"] "MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKIFQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGNEKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEAHPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"KDOTRANS-MONOMER" "KDO transferase" ["WaaA", "KdtA"] "MLELLYTALLYLIQPLIWIRLWVRGRKAPAYRKRWGERYGFYRHPLKPGGIMLHSVSVGETLAAIPLVRALRHRYPDLPITVTTMTPTGSERVQSAFGKDVQHVYLPYDLPDALNRFLNKVDPKLVLIMETELWPNLIAALHKRKIPLVIANARLSARSAAGYAKLGKFVRRLLRRITLIAAQNEEDGARFVALGAKNNQVTVTGSLKFDISVTPQLAAKAVTLRRQWAPHRPVWIATSTHEGEESVVIAAHQALLQQFPNLLLILVPRHPERFPDAINLVRQAGLSYITRSSGEVPSTSTQVVVGDTMGELMLLYGIADLAFVGGSLVERGGHNPLEAAAHAIPVLMGPHTFNFKDICARLEQASGLITVTDATTLAKEVSSLLTDADYRSFYGRHAVEVLYQNQGALQRLLQLLEPYLPPKTH" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"KDOTRANS-MONOMER" "KDO transferase" ["WaaA", "KdtA"] "MLELLYTALLYLIQPLIWIRLWVRGRKAPAYRKRWGERYGFYRHPLKPGGIMLHSVSVGETLAAIPLVRALRHRYPDLPITVTTMTPTGSERVQSAFGKDVQHVYLPYDLPDALNRFLNKVDPKLVLIMETELWPNLIAALHKRKIPLVIANARLSARSAAGYAKLGKFVRRLLRRITLIAAQNEEDGARFVALGAKNNQVTVTGSLKFDISVTPQLAAKAVTLRRQWAPHRPVWIATSTHEGEESVVIAAHQALLQQFPNLLLILVPRHPERFPDAINLVRQAGLSYITRSSGEVPSTSTQVVVGDTMGELMLLYGIADLAFVGGSLVERGGHNPLEAAAHAIPVLMGPHTFNFKDICARLEQASGLITVTDATTLAKEVSSLLTDADYRSFYGRHAVEVLYQNQGALQRLLQLLEPYLPPKTH" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "KDPB-MONOMER" "K+ transporting P-type ATPase subunit KdpB" ["KdpB", "Kac"] "MSRKQLALFEPTLVVQALKEAVKKLNPQAQWRNPVMFIVWIGSLLTTCISIAMASGAMPGNALFSAAISGWLWITVLFANFAEALAEGRSKAQANSLKGVKKTAFARKLREPKYGAAADKVPADQLRKGDIVLVEAGDIIPCDGEVIEGGASVDESAITGESAPVIRESGGDFASVTGGTRILSDWLVIECSVNPGETFLDRMIAMVEGAQRRKTPNEIALTILLIALTIVFLLATATLWPFSAWGGNAVSVTVLVALLVCLIPTTIGGLLSAIGVAGMSRMLGANVIATSGRAVEAAGDVDVLLLDKTGTITLGNRQASEFIPAQGVDEKTLADAAQLASLADETPEGRSIVILAKQRFNLRERDVQSLHATFVPFTAQSRMSGINIDNRMIRKGSVDAIRRHVEANGGHFPTDVDQKVDQVARQGATPLVVVEGSRVLGVIALKDIVKGGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVHIGKQMLMTRGSLTTFSIANDVAKYFAIIPAAFAATYPQLNALNIMCLHSPDSAILSAVIFNALIIVFLIPLALKGVSYKPLTASAMLRRNLWIYGLGGLLVPFIGIKVIDLLLTVCGLV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 1 "KDPD-MONOMER" "sensor histidine kinase KdpD" ["Kac", "KdpD"] "MNNEPLRPDPDRLLEQTAAPHRGKLKVFFGACAGVGKTWAMLAEAQRLRAQGLDIVVGVVETHGRKDTAAMLEGLAVLPLKRQAYRGRHISEFDLDAALARRPALILMDELAHSNAPGSRHPKRWQDIEELLEAGIDVFTTVNVQHLESLNDVVSGVTGIQVRETVPDPFFDAADDVVLVDLPPDDLRQRLKEGKVYIAGQAERAIEHFFRKGNLIALRELALRRTADRVDEQMRAWRGHPGEEKVWHTRDAILLCIGHNTGSEKLVRAAARLASRLGSVWHAVYVETPALHRLPEKKRRAILSALRLAQELGAETATLSDPAEEKAVVRYAREHNLGKIILGRPASRRWWRRETFADRLARIAPDLDQVLVALDEPPARTINNAPDNRSFKDKWRVQIQGCVVAAALCAVITLIAMQWLMAFDAANLVMLYLLGVVVVALFYGRWPSVVATVINVVSFDLFFIAPRGTLAVSDVQYLLTFAVMLTVGLVIGNLTAGVRYQARVARYREQRTRHLYEMSKALAVGRSPQDIAATSEQFIASTFHARSQVLLPDDNGKLQPLTHPQGMTPWDDAIAQWSFDKGLPAGAGTDTLPGVPYQILPLKSGEKTYGLVVVEPGNLRQLMIPEQQRLLETFTLLVANALERLTLTASEEQARMASEREQIRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEPLTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQTIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLPQQTAPELEEFHEDM" ["CCO-PERI-BAC", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"KDPE-MONOMER" "DNA-binding transcriptional activator KdpE" ["KdpE response regulator", "KdpE transcriptional activator"] "MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"KDPE-MONOMER" "DNA-binding transcriptional dual regulator KdpE" ["KdpE response regulator", "KdpE transcriptional dual regulator", "KdpE"] "MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML" [] ["CCO-CYTOSOL"] 0 [] {} 0 "KDPGALDOL-4OH2OXOGLUTARALDOL-MONOMER" "KHG/KDPG aldolase" ["Kga", "Hga", "KdgA", "Eda"] "MKNWKTSAESILTTGPVVPVIVVKKLEHAVPMAKALVAGGVRVLEVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIGGSWLVPADALEAGDYDRITKLAREAVEGAKL" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"KDUD-MONOMER" "putative 2-keto-3-deoxy-D-gluconate dehydrogenase" ["YgeC", "YqeD", "KduD"] "MILSAFSLEGKVAVVTGCDTGLGQGMALGLAQAGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLDRAVAEFGHIDILVNNAGLIRREDALEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRWGLPSDLMGPIVFLASSASDYVNGYTIAVDGGWLAR" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"KEFB-MONOMER" null ["TrkB", "KefB", "KefB potassium CPA2 transporter"] "MEGSDFLLAGVLFLFAAVAAVPLASRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAALLAGLLMLTDFAWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKVGMKVLAFVGMLIGGRYLLRPVFRFIAASGVREVFTAATLLLVLGSALFMDALGLSMALGTFIAGVLLAESEYRHELETAIDPFKGLLLGLFFISVGMSLNLGVLYTHLLWVVISVVVLVAVKILVLYLLARLYGVRSSERMQFAGVLSQGGEFAFVLFSTASSQRLFQGDQMALLLVTVTLSMMTTPLLMKLVDKWLSRQFNGPEEEDEKPWVNDDKPQVIVVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQVDLLRSAGAEAAESIVITCNEPEDTMKLVEICQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLVTLGMHPHQAQRAQLHFRRLDMRMLRELIPMHADTVQISRAREARRELEEIFQREMQQERRQLDGWDEFE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"KEFC-MONOMER" "K+ : H+ antiporter KefC" ["TrkC", "KefC"] "MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGCGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLATSSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 +"KDUD-MONOMER" "2-keto-3-deoxy-D-gluconate dehydrogenase" ["YgeC", "YqeD", "KduD"] "MILSAFSLEGKVAVVTGCDTGLGQGMALGLAQAGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLDRAVAEFGHIDILVNNAGLIRREDALEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRWGLPSDLMGPIVFLASSASDYVNGYTIAVDGGWLAR" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"KEFB-MONOMER" null ["TrkB", "KefB", "KefB potassium CPA2 transporter"] "MEGSDFLLAGVLFLFAAVAAVPLASRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAALLAGLLMLTDFAWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKVGMKVLAFVGMLIGGRYLLRPVFRFIAASGVREVFTAATLLLVLGSALFMDALGLSMALGTFIAGVLLAESEYRHELETAIDPFKGLLLGLFFISVGMSLNLGVLYTHLLWVVISVVVLVAVKILVLYLLARLYGVRSSERMQFAGVLSQGGEFAFVLFSTASSQRLFQGDQMALLLVTVTLSMMTTPLLMKLVDKWLSRQFNGPEEEDEKPWVNDDKPQVIVVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQVDLLRSAGAEAAESIVITCNEPEDTMKLVEICQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLVTLGMHPHQAQRAQLHFRRLDMRMLRELIPMHADTVQISRAREARRELEEIFQREMQQERRQLDGWDEFE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"KEFC-MONOMER" "K+ : H+ antiporter KefC" ["TrkC", "KefC"] "MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGCGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLATSSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "KETOBUTFORMLY-INACT-MONOMER" "2-oxobutanoate formate-lyase/pyruvate formate-lyase 4" ["YhaS", "TdcE", "2-ketobutyrate formate-lyase/pyruvate formate-lyase 4"] "MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGDESFLAEATPATTELWEKVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIVGLQTDAPLKRALHPFGGINMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPDMLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDLEATIRLREELAEHRHALLQIQEMAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFKAGVLNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSGDPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEELPIAFKKYAAQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLMDDVLDYDKVMDSLDHFMDWLAVQYISALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVATDSLSAIKYARVKPIRDENGLAVDFEIDGEYPQYGNNDERVDSIACDLVERFMKKIKALPTYRNAVPTQSILTITSNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKEDPVRKTNLVGLLDGYFHHEADVEGGQHLNVNVMNREMLLDAIEHPEKYPNLTIRVSGYAVRFNALTREQQQDVISRTFTQAL" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "KETOLREDUCTOISOM-MONOMER" "ketol-acid reductoisomerase (NADP+)" ["IlvC"] "MANYFNTLNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEKLIQFGWETITEALKQGGITLMMDRLSNPAKLRAYALSEQLKEIMAPLFQKHMDDIISGEFSSGMMADWANDDKKLLTWREETGKTAFETAPQYEGKIGEQEYFDKGVLMIAMVKAGVELAFETMVDSGIIEESAYYESLHELPLIANTIARKRLYEMNVVISDTAEYGNYLFSYACVPLLKPFMAELQPGDLGKAIPEGAVDNGQLRDVNEAIRSHAIEQVGKKLRGYMTDMKRIAVAG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MG+2": 2} 1 "KGTP-MONOMER" "α-ketoglutarate:H+ symporter" ["WitA", "KgtP", "α-ketoglutarate MFS transporter"] "MAESTVTADSKLTSSDTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLLSVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQHTMEDAALREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAAIFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANAIFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHRKGKGMRL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "KUP-MONOMER" "K+:H+ symporter Kup" ["TrkD", "Kup"] "MSTDNKQSLPAITLAAIGVVYGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNTSARTTSMLVIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVPLSIIVLTLLFMIQKHGTAMVGKLFAPIMLTWFLILAGLGLRSIIANPEVLHALNPMWAVHFFLEYKTVSFIALGAVVLSITGVEALYADMGHFGKFPIRLAWFTVVLPSLTLNYFGQGALLLKNPEAIKNPFFLLAPDWALIPLLIIAALATVIASQAVISGVFSLTRQAVRLGYLSPMRIIHTSEMESGQIYIPFVNWMLYVAVVIVIVSFEHSSNLAAAYGIAVTGTMVLTSILSTTVARQNWHWNKYFVALILIAFLCVDIPLFTANLDKLLSGGWLPLSLGTVMFIVMTTWKSERFRLLRRMHEHGNSLEAMIASLEKSPPVRVPGTAVYMSRAINVIPFALMHNLKHNKVLHERVILLTLRTEDAPYVHNVRRVQIEQLSPTFWRVVASYGWRETPNVEEVFHRCGLEGLSCRMMETSFFMSHESLILGKRPWYLRLRGKLYLLLQRNALRAPDQFEIPPNRVIELGTQVEI" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "L-ASPARTATE-OXID-MONOMER" "L-aspartate oxidase" ["Nic", "NicB", "NadB"] "MNTLPEHSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERSNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEFNQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPDFDERGELAPRDIVARAIDHEMKRLGADCMFLDISHKPADFIRQHFPMIYEKLLGLGIDLTQEPVPIVPAAHYTCGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRMPYAHDISTLPPWDESRVENPDERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVSNNLLELRNLVQVAELIVRCAMMRKESRGLHFTLDYPELLTHSGPSILSPGNHYINR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "L-GLN-FRUCT-6-P-AMINOTRANS-MONOMER" "L-glutamine—D-fructose-6-phosphate aminotransferase" ["GlmS"] "MCGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNIFDKTGAEVKRQDIESNLQYDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 -"L-LACTDEHYDROGFMN-MONOMER" "L-lactate dehydrogenase" ["Lct", "LctD", "LldD"] "MIISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLVQGLGKELPAALAPMAKGNAA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"L-LACTDEHYDROGFMN-MONOMER" "L-lactate dehydrogenase" ["Lct", "LctD", "LldD"] "MIISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLVQGLGKELPAALAPMAKGNAA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "LACTALDDEHYDROG-MONOMER" "aldehyde dehydrogenase A" ["Ald", "AldA"] "MSVPVQHPMYIDGQFVTWRGDAWIDVVNPATEAVISRIPDGQAEDARKAIDAAERAQPEWEALPAIERASWLRKISAGIRERASEISALIVEEGGKIQQLAEVEVAFTADYIDYMAEWARRYEGEIIQSDRPGENILLFKRALGVTTGILPWNFPFFLIARKMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPKVAMVSMTGSVSAGEKIMATAAKNITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNCAERVYVQKGIYDQFVNRLGEAMQAVQFGNPAERNDIAMGPLINAAALERVEQKVARAVEEGARVAFGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEDAISMANDSDYGLTSSIYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIGGADGKHGLHEYLQTQVVYLQS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "LACTALDREDUCT-MONOMER" "L-1,2-propanediol oxidoreductase" ["FucO"] "MANRMILNETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTAAEVTINYVITDEEKRRKFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAIEGYITRGAWALTDALHIKAIEIIAGALRGSVAGDKDAGEEMALGQYVAGMGFSNVGLGLVHGMAHPLGAFYNTPHGVANAILLPHVMRYNADFTGEKYRDIARVMGVKVEGMSLEEARNAAVEAVFALNRDVGIPPHLRDVGVRKEDIPALAQAALDDVCTGGNPREATLEDIVELYHTAW" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"FE+2": 1} 1 "LACY-MONOMER" "lactose permease" ["lactose/melibiose:H+ symporter", "lac permease", "LacY", "galactoside:proton symporter"] "MYYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALCASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQVNEVA" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "LARGEILVB-MONOMER" "acetohydroxy acid synthase I subunit IlvB" ["IlvB", "acetohydroxy acid synthase I, large subunit"] "MASSGTTSTRKRFTGAEFIVHFLEQQGIKIVTGIPGGSILPVYDALSQSTQIRHILARHEQGAGFIAQGMARTDGKPAVCMACSGPGATNLVTAIADARLDSIPLICITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRHIEELPQVMSDAFRIAQSGRPGPVWIDIPKDVQTAVFEIETQPAMAEKAAAPAFSEESIRDAAAMINAAKRPVLYLGGGVINAPARVRELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGVRSTNYILQEADLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLIPLVEAQPRAEWHQLVADLQREFPCPIPKACDPLSHYGLINAVAACVDDNAIITTDVGQHQMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPDRKVLCFSGDGSLMMNIQEMATASENQLDVKIILMNNEALGLVHQQQSLFYEQGVFAATYPGKINFMQIAAGFGLETCDLNNEADPQASLQEIINRPGPALIHVRIDAEEKVYPMVPPGAANTEMVGE" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "LAUROYLACYLTRAN-MONOMER" null ["WaaM", "HtrB", "LpxL"] "MTNLPKFSTALLHPRYWLTWLGIGVLWLVVQLPYPVIYRLGCGLGKLALRFMKRRAKIVHRNLELCFPEMSEQERRKMVVKNFESVGMGLMETGMAWFWPDRRIARWTEVIGMEHIRDVQAQKRGILLVGIHFLTLELGARQFGMQEPGIGVYRPNDNPLIDWLQTWGRLRSNKSMLDRKDLKGMIKALKKGEVVWYAPDHDYGPRSSVFVPLFAVEQAATTTGTWMLARMSGACLVPFVPRRKPDGKGYQLIMLPPECSPPLDDAETTAAWMNKVVEKCIMMAPEQYMWLHRRFKTRPEGVPSRY" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"LCTP-MONOMER" "lactate/glycolate:H+ symporter LldP" ["Lct", "LctP", "LldP"] "MNLWQQNYDPAGNIWLSSLIASLPILFFFFALIKLKLKGYVAASWTVAIALAVALLFYKMPVANALASVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDIIRSSILSITPDQRLQMLIVGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLCLIVNTAPVAFGAMGIPILVAGQVTGIDSFEIGQMVGRQLPFMTIIVLFWIMAIMDGWRGIKETWPAVVVAGGSFAIAQYLSSNFIGPELPDIISSLVSLLCLTLFLKRWQPVRVFRFGDLGASQVDMTLAHTGYTAGQVLRAWTPFLFLTATVTLWSIPPFKALFASGGALYEWVINIPVPYLDKLVARMPPVVSEATAYAAVFKFDWFSATGTAILFAALLSIVWLKMKPSDAISTFGSTLKELALPIYSIGMVLAFAFISNYSGLSSTLALALAHTGHAFTFFSPFLGWLGVFLTGSDTSSNALFAALQATAAQQIGVSDLLLVAANTTGGVTGKMISPQSIAIACAAVGLVGKESDLFRFTVKHSLIFTCIVGVITTLQAYVLTWMIP" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"LCTP-MONOMER" "lactate/glycolate:H+ symporter LldP" ["Lct", "LctP", "LldP"] "MNLWQQNYDPAGNIWLSSLIASLPILFFFFALIKLKLKGYVAASWTVAIALAVALLFYKMPVANALASVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDIIRSSILSITPDQRLQMLIVGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLCLIVNTAPVAFGAMGIPILVAGQVTGIDSFEIGQMVGRQLPFMTIIVLFWIMAIMDGWRGIKETWPAVVVAGGSFAIAQYLSSNFIGPELPDIISSLVSLLCLTLFLKRWQPVRVFRFGDLGASQVDMTLAHTGYTAGQVLRAWTPFLFLTATVTLWSIPPFKALFASGGALYEWVINIPVPYLDKLVARMPPVVSEATAYAAVFKFDWFSATGTAILFAALLSIVWLKMKPSDAISTFGSTLKELALPIYSIGMVLAFAFISNYSGLSSTLALALAHTGHAFTFFSPFLGWLGVFLTGSDTSSNALFAALQATAAQQIGVSDLLLVAANTTGGVTGKMISPQSIAIACAAVGLVGKESDLFRFTVKHSLIFTCIVGVITTLQAYVLTWMIP" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "LDC2-MONOMER" "lysine decarboxylase 2" ["LdcC", "Ldc", "LdcH", "lysine decarboxylase, constitutive"] "MNIIAIMGPHGVFYKDEPIKELESALVAQGFQIIWPQNSVDLLKFIEHNPRICGVIFDWDEYSLDLCSDINQLNEYLPLYAFINTHSTMDVSVQDMRMALWFFEYALGQAEDIAIRMRQYTDEYLDNITPPFTKALFTYVKERKYTFCTPGHMGGTAYQKSPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPSGSTLLIDRNCHKSLAHLLMMNDVVPVWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQTLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVAGKVIFETQSTHKMLAALSQASLIHIKGEYDEEAFNEAFMMHTTTSPSYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPPQVDEAECWPVAPGEQWHGFNDADADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKRSYDLNLRIKNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRKHDLPGLMLRAFDTLPEMIMTPHQAWQRQIKGEVETIALEQLVGRVSANMILPYPPGVPLLMPGEMLTKESRTVLDFLLMLCSVGQHYPGFETDIHGAKQDEDGVYRVRVLKMAG" [] ["CCO-CYTOSOL"] 0 [] {} 1 "LEUC-MONOMER" "3-isopropylmalate dehydratase subunit LeuC" ["LeuC", "3-isopropylmalate dehydratase, large subunit"] "MAKTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGRPVRQPGKTFATMDHNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNHPYQGIVHVMGPEQGVTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGITAKDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTFNYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVISVNDNIPDPASFADPVERASAEKALAYMGLKPGIPLTEVAIDKVFIGSCTNSRIEDLRAAAEIAKGRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNPGERCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIRNIK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"CPD-7": 1} 1 "LEUD-MONOMER" "3-isopropylmalate dehydratase subunit LeuD" ["LeuD", "3-isopropylmalate dehydratase, small subunit"] "MAEKFIKHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLFNDWRFLDEKGQQPNPDFVLNFPQYQGASILLARENFGCGSSREHAPWALTDYGFKVVIAPSFADIFYGNSFNNQLLPVKLSDAEVDELFALVKANPGIHFDVDLEAQEVKAGEKTYRFTIDAFRRHCMMNGLDSIGLTLQHDDAIAAYEAKQPAFMN" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 @@ -3450,8 +3450,8 @@ "LUMAZINESYN-MONOMER" "6,7-dimethyl-8-ribityllumazine synthase" ["YbaF", "RibH", "RibE"] "MNIIEANVATPDARVAITIARFNNFINDSLLEGAIDALKRIGQVKDENITVVWVPGAYELPLAAGALAKTGKYDAVIALGTVIRGGTAHFEYVAGGASNGLAHVAQDSEIPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "LYSDECARBOX-MONOMER" "lysine decarboxylase 1" ["LdcI", "CadA"] "MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDKYNLELCEEISKMNENLPLYAFANTYSTLDVSLNDLRLQISFFEYALGAAEDIANKIKQTTDEYINTILPPLTKALFKYVREGKYTFCTPGHMGGTAFQKSPVGSLFYDFFGPNTMKSDISISVSELGSLLDHSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKSIHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKRAFDLNLRVKNMLPSLYREDPEFYENMRIQELAQNIHKLIVHHNLPDLMYRAFEVLPTMVMTPYAAFQKELHGMTEEVYLDEMVGRINANMILPYPPGVPLVMPGEMITEESRPVLEFLQMLCEIGAHYPGFETDIHGAYRQADGRYTVKVLKEESKK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "LYSP-MONOMER" null ["CadR", "LysP", "lysine:proton symporter", "lysine transporter", "lysine specific permease"] "MVSETKTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAQPAGWSNWTIGEAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDINDLPYRSGFFPLGPIFAFILCLIITLGQNYEAFLKDTIDWGGVAATYIGIPLFLIIWFGYKLIKGTHFVRYSEMKFPQNDKK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 1 [] {} 0 -"LYSS-MONOMER" "lysine—tRNA ligase" ["HerC", "AsuD", "LysS", "LysRSs"] "MSEQHAQGADAVVDLNNELKTRREKLANLREQGIAFPNDFRRDHTSDQLHAEFDGKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDDLPEGVYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGLQDQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGAAARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAMRPVK" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-EXTRACELLULAR", "CCO-CYTOSOL"] 1 [] {"MG+2": 2} 1 -"LYSU-MONOMER" "lysyl-tRNA synthetase" ["LysU"] "MSEQETRGANEAIDFNDELRNRREKLAALRQQGVAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRPQK" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-EXTRACELLULAR", "CCO-CYTOSOL"] 1 [] {"MG+2": 2} 1 +"LYSS-MONOMER" "lysine—tRNA ligase" ["HerC", "AsuD", "LysS", "LysRSs"] "MSEQHAQGADAVVDLNNELKTRREKLANLREQGIAFPNDFRRDHTSDQLHAEFDGKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDDLPEGVYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGLQDQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGAAARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAMRPVK" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MG+2": 2} 1 +"LYSU-MONOMER" "lysyl-tRNA synthetase" ["LysU"] "MSEQETRGANEAIDFNDELRNRREKLAALRQQGVAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRPQK" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MG+2": 2} 1 "LYXK-MONOMER" "L-xylulose kinase" ["XylK", "Lyx", "YiaP", "SgbK", "LyxK"] "MTQYWLGLDCGGSWLKAGLYDREGREAGVQRLPLCALSPQPGWAERDMAELWQCCMAVIRALLTHSGVSGEQIVGIGISAQGKGLFLLDKNDKPLGNAILSSDRRAMEIVRRWQEDGIPEKLYPLTRQTLWTGHPVSLLRWLKEHEPERYAQIGCVMMTHDYLRWCLTGVKGCEESNISESNLYNMSLGEYDPCLTDWLGIAEINHALPPVVGSAEICGEITAQTAALTGLKAGTPVVGGLFDVVSTALCAGIEDEFTLNAVMGTWAVTSGITRGLRDGEAHPYVYGRYVNDGEFIVHEASPTSSGNLEWFTAQWGEISFDEINQAVASLPKAGGDLFFLPFLYGSNAGLEMTSGFYGMQAIHTRAHLLQAIYEGVVFSHMTHLNRMRERFTDVHTLRVTGGPAHSDVWMQMLADVSGLRIELPQVEETGCFGAALAARVGTGVYHNFSEAQRDLRHPVRTLLPDMTAHQLYQKKYQRYQHLIAALQGFHARIKEHTL" [] ["CCO-CYTOSOL"] 0 [] {} 1 "MACA" "ABC-type tripartite efflux pump membrane fusion protein" ["YbjY", "MacA", "macrolide efflux pump - membrane fusion protein"] "MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "MACB" "ABC-type tripartite efflux pump ATP binding/membrane subunit" ["YbjZ"] "MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNVTGGTEPVVNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 @@ -3463,7 +3463,7 @@ "MALG-MONOMER" "maltose ABC transporter membrane subunit MalG" [] "MAMVQPKSQKARLFITHLLLLLFIAAIMFPLLMVVAISLRQGNFATGSLIPEQISWDHWKLALGFSVEQADGRITPPPFPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFIGLNTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLNPQNYLWGDFAAAAVMSALPITIVFLLAQRWLVNGLTAGGVKG" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "MALIC-NAD-MONOMER" "malate dehydrogenase (oxaloacetate-decarboxylating)" ["MaeA", "SfcA", "malate dehydrogenase, NAD-requiring", "NAD+-dependent malate dehydrogenase", "NAD+-dependent malic enzyme"] "MEPKTKKQRSLYIPYAGPVLLEFPLLNKGSAFSMEERRNFNLLGLLPEVVETIEEQAERAWIQYQGFKTEIDKHIYLRNIQDTNETLFYRLVNNHLDEMMPVIYTPTVGAACERFSEIYRRSRGVFISYQNRHNMDDILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRITDDEYYEFVDEFIQAVKQRWPDVLLQFEDFAQKNAMPLLNRYRNEICSFNDDIQGTAAVTVGTLIAASRAAGGQLSEKKIVFLGAGSAGCGIAEMIISQTQREGLSEEAARQKVFMVDRFGLLTDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVVWKDKIYPIAQCNNAFIFPGIGLGVIASGASRITDEMLMSASETLAQYSPLVLNGEGMVLPELKDIQKVSRAIAFAVGKMAQQQGVAVKTSAEALQQAIDDNFWQAEYRDYRRTSI" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "MALIC-NADP-MONOMER" "malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)" ["YpfF", "MaeB", "NADP+-dependent malate dehydrogenase", "NADP+-dependent malic enzyme"] "MDDQLKQSALDFHEFPVPGKIQVSPTKPLATQRDLALAYSPGVAAPCLEIEKDPLKAYKYTARGNLVAVISNGTAVLGLGNIGALAGKPVMEGKGVLFKKFAGIDVFDIEVDELDPDKFIEVVAALEPTFGGINLEDIKAPECFYIEQKLRERMNIPVFHDDQHGTAIISTAAILNGLRVVEKNISDVRMVVSGAGAAAIACMNLLVALGLQKHNIVVCDSKGVIYQGREPNMAETKAAYAVVDDGKRTLDDVIEGADIFLGCSGPKVLTQEMVKKMARAPMILALANPEPEILPPLAKEVRPDAIICTGRSDYPNQVNNVLCFPFIFRGALDVGATAINEEMKLAAVRAIAELAHAEQSEVVASAYGDQDLSFGPEYIIPKPFDPRLIVKIAPAVAKAAMESGVATRPIADFDVYIDKLTEFVYKTNLFMKPIFSQARKAPKRVVLPEGEEARVLHATQELVTLGLAKPILIGRPNVIEMRIQKLGLQIKAGVDFEIVNNESDPRFKEYWTEYFQIMKRRGVTQEQAQRALISNPTVIGAIMVQRGEADAMICGTVGDYHEHFSVVKNVFGYRDGVHTAGAMNALLLPSGNTFIADTYVNDEPDAEELAEITLMAAETVRRFGIEPRVALLSHSNFGSSDCPSSSKMRQALELVRERAPELMIDGEMHGDAALVEAIRNDRMPDSSLKGSANILVMPNMEAARISYNLLRVSSSEGVTVGPVLMGVAKPVHVLTPIASVRRIVNMVALAVVEAQTQPL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 -"MALK-MONOMER" "maltose ABC transporter ATP binding subunit" ["MalB"] "MASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTACRRLHKEPGV" ["CCO-MEMBRANE"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"MALK-MONOMER" "maltose ABC transporter ATP binding subunit" ["MalB"] "MASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTACRRLHKEPGV" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "MALONYL-COA-ACP-TRANSACYL-MONOMER" "[acyl-carrier-protein] S-malonyltransferase" ["TfpA", "FabD"] "MTQFAFVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQPALLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGKFMQEAVPEGTGAMAAIIGLDDASIAKACEEAAEGQVVSPVNFNSPGQVVIAGHKEAVERAGAACKAAGAKRALPLPVSVPSHCALMKPAADKLAVELAKITFNAPTVPVVNNVDVKCETNGDAIRDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVLTGLTKRIVDTLTASALNEPSAMAAALEL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "MALSYNG-MONOMER" null ["Glc", "GlcB"] "MSQTITQSRLRIDANFKRFVDEEVLPGTGLDAAAFWRNFDEIVHDLAPENRQLLAERDRIQAALDEWHRSNPGPVKDKAAYKSFLRELGYLVPQPERVTVETTGIDSEITSQAGPQLVVPAMNARYALNAANARWGSLYDALYGSDIIPQEGAMVSGYDPQRGEQVIAWVRRFLDESLPLENGSYQDVVAFKVVDKQLRIQLKNGKETTLRTPAQFVGYRGDAAAPTCILLKNNGLHIELQIDANGRIGKDDPAHINDVIVEAAISTILDCEDSVAAVDAEDKILLYRNLLGLMQGTLQEKMEKNGRQIVRKLNDDRHYTAADGSEISLHGRSLLFIRNVGHLMTIPVIWDSEGNEIPEGILDGVMTGAIALYDLKVQKNSRTGSVYIVKPKMHGPQEVAFANKLFTRIETMLGMAPNTLKMGIMDEERRTSLNLRSCIAQARNRVAFINTGFLDRTGDEMHSVMEAGPMLRKNQMKSTPWIKAYERNNVLSGLFCGLRGKAQIGKGMWAMPDLMADMYSQKGDQLRAGANTAWVPSPTAATLHALHYHQTNVQSVQANIAQTEFNAEFEPLLDDLLTIPVAENANWSAQEIQQELDNNVQGILGYVVRWVEQGIGCSKVPDIHNVALMEDRATLRISSQHIANWLRHGILTKEQVQASLENMAKVVDQQNAGDPAYRPMAGNFANSCAFKAASDLIFLGVKQPNGYTEPLLHAWRLREKESH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MG+2": 1} 0 "MALTACETYLTRAN-MONOMER" "maltose O-acetyltransferase" ["Maa", "YlaD"] "MSTEKEKMIAGELYRSADETLSRDRLRARQLIHRYNHSLAEEHTLRQQILADLFGQVTEAYIEPTFRCDYGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKKL" [] ["CCO-CYTOSOL"] 1 [] {} 1 @@ -3488,8 +3488,8 @@ "METHYLENETHFREDUCT-MONOMER" "5,10-methylenetetrahydrofolate reductase" ["MetF"] "MSFFHASQRDALNQSLAEVQGQINVSFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGANIAMDMVKILSREGVKDFHFYTLNRAEMSYAICHTLGVRPGL" [] ["CCO-CYTOSOL"] 0 [] {} 1 "METHYLMALONYL-COA-MUT-MONOMER" "methylmalonyl-CoA mutase" ["YliK", "Sbm", "ScpA"] "MSNVQEWQQLANKELSRREKTVDSLVHQTAEGIAIKPLYTEADLDNLEVTGTLPGLPPYVRGPRATMYTAQPWTIRQYAGFSTAKESNAFYRRNLAAGQKGLSVAFDLATHRGYDSDNPRVAGDVGKAGVAIDTVEDMKVLFDQIPLDKMSVSMTMNGAVLPVLAFYIVAAEEQGVTPDKLTGTIQNDILKEYLCRNTYIYPPKPSMRIIADIIAWCSGNMPRFNTISISGYHMGEAGANCVQQVAFTLADGIEYIKAAISAGLKIDDFAPRLSFFFGIGMDLFMNVAMLRAARYLWSEAVSGFGAQDPKSLALRTHCQTSGWSLTEQDPYNNVIRTTIEALAATLGGTQSLHTNAFDEALGLPTDFSARIARNTQIIIQEESELCRTVDPLAGSYYIESLTDQIVKQARAIIQQIDEAGGMAKAIEAGLPKRMIEEASAREQSLIDQGKRVIVGVNKYKLDHEDETDVLEIDNVMVRNEQIASLERIRATRDDAAVTAALNALTHAAQHNENLLAAAVNAARVRATLGEISDALEVAFDRYLVPSQCVTGVIAQSYHQSEKSASEFDAIVAQTEQFLADNGRRPRILIAKMGQDGHDRGAKVIASAYSDLGFDVDLSPMFSTPEEIARLAVENDVHVVGASSLAAGHKTLIPELVEALKKWGREDICVVAGGVIPPQDYAFLQERGVAAIYGPGTPMLDSVRDVLNLISQHHD" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "METI-MONOMER" "L-methionine/D-methionine ABC transporter membrane subunit" ["MetD", "YaeE"] "MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"METQ-MONOMER" "L-methionine/D-methionine ABC transporter membrane anchored binding protein" ["MetQ", "MetD", "YaeC"] "MAFKFKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQVAEVAQKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYKLVAVGNTFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDVVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGIFVEDKESPYVNLIVTREDNKDAENVKKFVQAYQSDEVYEAANKVFNGGAVKGW" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {} 1 -"MGLA-MONOMER" "D-galactose/methyl-galactoside ABC transporter ATP binding subunit" ["MglP", "Mgl", "MglA"] "MVSSTTPSSGEYLLEMSGINKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGTILFQGKEIDFHSAKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRETKAIFDELDIDIDPRARVGTLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEVTVLRDGQWIATEPLAGLTMDKIIAMMVGRSLNQRFPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKQINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKGKGIIIISSEMPELLGITDRILVMSNGLVSGIVDTKTTTQNEILRLASLHL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"METQ-MONOMER" "L-methionine/D-methionine ABC transporter membrane anchored binding protein" ["MetQ", "MetD", "YaeC"] "MAFKFKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQVAEVAQKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYKLVAVGNTFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDVVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGIFVEDKESPYVNLIVTREDNKDAENVKKFVQAYQSDEVYEAANKVFNGGAVKGW" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 1 +"MGLA-MONOMER" "D-galactose/methyl-galactoside ABC transporter ATP binding subunit" ["MglP", "Mgl", "MglA"] "MVSSTTPSSGEYLLEMSGINKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGTILFQGKEIDFHSAKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRETKAIFDELDIDIDPRARVGTLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEVTVLRDGQWIATEPLAGLTMDKIIAMMVGRSLNQRFPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKQINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKGKGIIIISSEMPELLGITDRILVMSNGLVSGIVDTKTTTQNEILRLASLHL" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "MGLB-MONOMER" "D-galactose/methyl-galactoside ABC transporter periplasmic binding protein" ["MglB", "D-galactose/D-glucose binding protein", "GGBP", "GBP"] "MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "MGLC-MONOMER" "D-galactose/methyl-galactoside ABC transporter membrane subunit" ["MglP", "MglC"] "MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDNANKVFPEMATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASPISGFDSGFSTFAQGFVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVGLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDSLKYARKK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "MGTA-MONOMER" "Mg2+ importing P-type ATPase" ["Mtg", "Mgt", "CorB", "AtmA", "MgtA"] "MFKEIFTRLIRHLPSRLVHRDPLPGAQQTVNTVVPPSLSAHCLKMAVMPEEELWKTFDTHPEGLNQAEVESAREQHGENKLPAQQPSPWWVHLWVCYRNPFNILLTILGAISYATEDLFAAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVLRVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLRILQARDLFVAQASLTGESLPVEKAATTRQPEHSNPLECDTLCFMGTTVVSGTAQAMVIATGANTWFGQLAGRVSEQESEPNAFQQGISRVSMLLIRFMLVMAPVVLLINGYTKGDWWEAALFALSVAVGLTPEMLPMIVTSTLARGAVKLSKQKVIVKHLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDISGKTSERVLHSAWLNSHYQTGLKNLLDTAVLEGTDEESARSLASRWQKIDEIPFDFERRRMSVVVAENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRKIKRVTDTLNRQGLRVVAVATKYLPAREGDYQRADESDLILEGYIAFLDPPKETTAPALKALKASGITVKILTGDSELVAAKVCHEVGLDAGEVVIGSDIETLSDDELANLAQRTTLFARLTPMHKERIVTLLKREGHVVGFMGDGINDAPALRAADIGISVDGAVDIAREAADIILLEKSLMVLEEGVIEGRRTFANMLKYIKMTASSNFGNVFSVLVASAFLPFLPMLPLHLLIQNLLYDVSQVAIPFDNVDDEQIQKPQRWNPADLGRFMIFFGPISSIFDILTFCLMWWVFHANTPETQTLFQSGWFVVGLLSQTLIVHMIRTRRVPFIQSCASWPLMIMTVIVMIVGIALPFSPLASYLQLQALPLSYFPWLVAILAGYMTLTQLVKGFYSRRYGWQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 0 @@ -3503,17 +3503,17 @@ "MODA-MONOMER" "molybdate ABC transporter periplasmic binding protein" [] "MARKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTIK" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {"CPD-3": 1} 1 "MODB-MONOMER" "molybdate ABC transporter membrane subunit" ["TslJ", "ChlJ"] "MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAGR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "MODC-MONOMER" "molybdate ABC transporter ATP binding subunit" ["NarD", "ChlD"] "MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMSKSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELAIKPGLWLYAQIKSVSITA" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 -"MODF-MONOMER" "ABC family protein ModF" ["ModF", "ChlD", "PhrA", "ORF6"] "MSSLQILQGTFRLSDTKTLQLPQLTLNAGDSWAFVGSNGSGKSALARALAGELPLLKGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLGPGEDDTGRTTAEIIQDEVKDAPRCMQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAERLASLHQSGITLVLVLNRFDEIPEFVQFAGVLADCTLAETGAKEELLQQALVAQLAHSEQLEGVQLPEPDEPSARHALPANEPRIVLNNGVVSYNDRPILNNLSWQVNPGEHWQIVGPNGAGKSTLLSLVTGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTTVRNVILSGYFDSIGIYQAVSDRQQKLVQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLIRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGGLYRYVLTKIY" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MODF-MONOMER" "ABC family protein ModF" ["ModF", "ChlD", "PhrA", "ORF6"] "MSSLQILQGTFRLSDTKTLQLPQLTLNAGDSWAFVGSNGSGKSALARALAGELPLLKGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLGPGEDDTGRTTAEIIQDEVKDAPRCMQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAERLASLHQSGITLVLVLNRFDEIPEFVQFAGVLADCTLAETGAKEELLQQALVAQLAHSEQLEGVQLPEPDEPSARHALPANEPRIVLNNGVVSYNDRPILNNLSWQVNPGEHWQIVGPNGAGKSTLLSLVTGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTTVRNVILSGYFDSIGIYQAVSDRQQKLVQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLIRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGGLYRYVLTKIY" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER-162" "FMNH2-dependent alkanesulfonate monooxygenase" ["YcbN", "SsuD"] "MSLNMFWFLPTHGDGHYLGTEEGSRPVDHGYLQQIAQAADRLGYTGVLIPTGRSCEDAWLVAASMIPVTQRLKFLVALRPSVTSPTVAARQAATLDRLSNGRALFNLVTGSDPQELAGDGVFLDHSERYEASAEFTQVWRRLLQRETVDFNGKHIHVRGAKLLFPAIQQPYPPLYFGGSSDVAQELAAEQVDLYLTWGEPPELVKEKIEQVRAKAAAHGRKIRFGIRLHVIVRETNDEAWQAAERLISHLDDETIAKAQAAFARTDSVGQQRMAALHNGKRDNLEISPNLWAGVGLVRGGAGTALVGDGPTVAARINEYAALGIDSFVLSGYPHLEEAYRVGELLFPLLDVAIPEIPQPQPLNPQGEAVANDFIPRKVAQS" [] [] 1 [] {} 1 "MONOMER-43" "glyoxylate reductase" ["TkrA", "YiaE", "GhrB"] "MKPSVILYKALPDDLLQRLQEHFTVHQVANLSPQTVEQNAAIFAEAEGLLGSNENVNAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGKVEKNCVNPHVAD" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 "MONOMER0-1001" "Rac prophage; zinc-binding protein" ["YdaE"] "MTKKIKCAYHLCKKDVEESKAIERMLHFMHGILSKDEPRKYCSEACAEKDQMAHEL" [] [] 0 [] {} 0 "MONOMER0-1041" "ribosome-dependent mRNA interferase toxin YoeB" ["YoeB", "toxin of the YoeB-YefM toxin-antitoxin pair"] "MKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAACRYHY" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"MONOMER0-12" "K+ transporting P-type ATPase subunit KdpF" ["KdpF"] "MSAGVITGVLLVFLLLGYLVYALINAEAF" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 +"MONOMER0-12" "K+ transporting P-type ATPase subunit KdpF" ["KdpF"] "MSAGVITGVLLVFLLLGYLVYALINAEAF" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "MONOMER0-1241" "glutamate—pyruvate aminotransferase AlaB" ["AlaB"] null [] [] 0 [] {} 0 "MONOMER0-1261" "dihydroxyacetone kinase subunit L" ["YcgS", "DhaL", "YsgS"] "MSLSRTQIVNWLTRCGDIFSTESEYLTGLDREIGDADHGLNMNRGFSKVVEKLPAIADKDIGFILKNTGMTLLSSVGGASGPLFGTFFIRAAQATQARQSLTLEELYQMFRDGADGVISRGKAEPGDKTMCDVWVPVVESLRQSSEQNLSVPVALEAASSIAESAAQSTITMQARKGRASYLGERSIGHQDPGATSVMFMMQMLALAAKE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 -"MONOMER0-141" "hydrogenase 4 component D" ["HyfD"] "MENLALTTLLLPFIGALVVSFSPQRRAAEWGVLFAALTTLCMLSLISAFYQADKVAVTLTLVNVGDVALFGLVIDRVSTLILFVVVFLGLLVTIYSTGYLTDKNREHPHNGTNRYYAFLLVFIGAMAGLVLSSTLLGQLLFFEITGGCSWALISYYQSDKAQRSALKALLITHIGSLGLYLAAATLFLQTGTFALSAMSELHGDARYLVYGGILFAAWGKSAQLPMQAWLPDAMEAPTPISAYLHAASMVKVGVYIFARAIIDGGNIPHVIGGVGMVMALVTILYGFLMYLPQQDMKRLLAWSTITQLGWMFFGLSLSIFGSRLALEGSIAYIVNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLHTLPLPGVGFCVAALAITGVPPFNGFFSKFPLFAAGFALSVEYWILLPAMILLMIESVASFAWFIRWFGRVVPGKPSEAVADAAPLPGSMRLVLIVLIVMSLISSVIAATWLQ" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"MONOMER0-142" "hydrogenase 4 component E" ["HyfE"] "MTGSMIVNNLAGLMMLTSLFVISVKSYRLSCGFYACQSLVLVSIFATLSCLFAAEQLLIWSASAFITKVLLVPLIMTYAARNIPQNIPEKALFGPAMMALLAALIVLLCAFVVQPVKLPMATGLKPALAVALGHFLLGLLCIVSQRNILRQIFGYCLMENGSHLVLALLAWRAPELVEIGIATDAIFAVIVMVLLARKIWRTHGTLDVNNLTALKG" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"MONOMER0-143" "hydrogenase 4 component F" ["HyfF"] "MSYSVMFALLLLTPLLFSLLCFACRKRRLSATRTVTVLHSLGITLLLILALWVVQTAADAGEIFAAGLWLHIDGLGGLFLAILGVIGFLTGIYSIGYMRHEVAHGELSPVTLCDYYGFFHLFLFTMLLVVTSNNLIVMWAAIEATTLSSAFLVGIYGQRSSLEAAWKYIIICTVGVAFGLFGTVLVYANAASVMPQAEMAIFWSEVLKQSSLLDPTLMLLAFVFLLIGFGTKTGLFPMHAWLPDAHSEAPSPVSALLSAVLLNCALLVLIRYYIIICQAIGSDFPNRLLLIFGMLSVAVAAFFILVQRDIKRLLAYSSVENMGLVAVELGIGGPLGIFAALLHILNHSLAKTLLFCGSGNVLLKYGTRDLNVVCGMLKIMPFTAVLFGGGALALAGMPPFNIFLSEFMTITAGLARNHLLIIVLLLLLLTLVLAGLVRMAARVLMAKPPQAVNRGDLGWLTTSPMVILLVMMLAMGTHIPQPVIRILAGASTIVLSGTHDLPAQRSTWHDFLPSGTASVSEKHSER" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"MONOMER0-141" "hydrogenase 4 component D" ["HyfD"] "MENLALTTLLLPFIGALVVSFSPQRRAAEWGVLFAALTTLCMLSLISAFYQADKVAVTLTLVNVGDVALFGLVIDRVSTLILFVVVFLGLLVTIYSTGYLTDKNREHPHNGTNRYYAFLLVFIGAMAGLVLSSTLLGQLLFFEITGGCSWALISYYQSDKAQRSALKALLITHIGSLGLYLAAATLFLQTGTFALSAMSELHGDARYLVYGGILFAAWGKSAQLPMQAWLPDAMEAPTPISAYLHAASMVKVGVYIFARAIIDGGNIPHVIGGVGMVMALVTILYGFLMYLPQQDMKRLLAWSTITQLGWMFFGLSLSIFGSRLALEGSIAYIVNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLHTLPLPGVGFCVAALAITGVPPFNGFFSKFPLFAAGFALSVEYWILLPAMILLMIESVASFAWFIRWFGRVVPGKPSEAVADAAPLPGSMRLVLIVLIVMSLISSVIAATWLQ" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"MONOMER0-142" "hydrogenase 4 component E" ["HyfE"] "MTGSMIVNNLAGLMMLTSLFVISVKSYRLSCGFYACQSLVLVSIFATLSCLFAAEQLLIWSASAFITKVLLVPLIMTYAARNIPQNIPEKALFGPAMMALLAALIVLLCAFVVQPVKLPMATGLKPALAVALGHFLLGLLCIVSQRNILRQIFGYCLMENGSHLVLALLAWRAPELVEIGIATDAIFAVIVMVLLARKIWRTHGTLDVNNLTALKG" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"MONOMER0-143" "hydrogenase 4 component F" ["HyfF"] "MSYSVMFALLLLTPLLFSLLCFACRKRRLSATRTVTVLHSLGITLLLILALWVVQTAADAGEIFAAGLWLHIDGLGGLFLAILGVIGFLTGIYSIGYMRHEVAHGELSPVTLCDYYGFFHLFLFTMLLVVTSNNLIVMWAAIEATTLSSAFLVGIYGQRSSLEAAWKYIIICTVGVAFGLFGTVLVYANAASVMPQAEMAIFWSEVLKQSSLLDPTLMLLAFVFLLIGFGTKTGLFPMHAWLPDAHSEAPSPVSALLSAVLLNCALLVLIRYYIIICQAIGSDFPNRLLLIFGMLSVAVAAFFILVQRDIKRLLAYSSVENMGLVAVELGIGGPLGIFAALLHILNHSLAKTLLFCGSGNVLLKYGTRDLNVVCGMLKIMPFTAVLFGGGALALAGMPPFNIFLSEFMTITAGLARNHLLIIVLLLLLLTLVLAGLVRMAARVLMAKPPQAVNRGDLGWLTTSPMVILLVMMLAMGTHIPQPVIRILAGASTIVLSGTHDLPAQRSTWHDFLPSGTASVSEKHSER" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "MONOMER0-144" "hydrogenase 4 component H" ["HyfH"] "MLKLLKTIMRAGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACGACACACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLYTRATFHLQRCSRCERPFAPQKTIALAAELLAQQQNAPQNREMLWAQASVCPECKQRATLINDDTDVLLVAKEQL" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-PERI-BAC"] 0 [] {"CPD-7": 2} 1 "MONOMER0-145" "hydrogenase 2 small subunit" ["YghV", "HybO", "hydrogenase 2 subunit β"] "MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGRQQKKDNADSRGE" ["CCO-MEMBRANE"] ["CCO-PERI-BAC", "CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"CPD-7": 2, "3FE-4S": 1} 1 "MONOMER0-146" "NADPH-dependent FMN reductase" ["YcbP", "SsuE"] "MRVITLAGSPRFPSRSSSLLEYAREKLNGLDVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLQQADGLIVATPVYKAAYSGALKTLLDLLPERALQGKVVLPLATGGTVAHLLAVDYALKPVLSALKAQEILHGVFADDSQVIDYHHRPQFTPNLQTRLDTALETFWQALHRRDVQVPDLLSLRGNAHA" [] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -3524,46 +3524,46 @@ "MONOMER0-1501" "protein MoaB" ["MoaB"] "MSQVSTEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFDREVEGFGEVFRMLSFEEIGTSTLQSRAVAGVANKTLIFAMPGSTKACRTAWENIIAPQLDARTRPCNFHPHLKK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "MONOMER0-151" "hydrogenase 4 catalytic subunit HyfI" ["HyfI", "hydrogenase 4, small subunit"] "MSPVLTQHVSQPITLDEQTQKMKRHLLQDIRRSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKIHAVDYRDPTGVTMQPLWPQIPPSQRIAIEREARRLAGYRQGREICDRLLRHLSDDPTGNRVNTWLRDADDPRLNSIVQQLFRVLRGLHD" [] ["CCO-PM-BAC-NEG"] 0 [] {"CPD-7": 1} 1 "MONOMER0-152" "hydrogenase 4 component A" ["YffE", "HyfA"] "MNRFVVAEPLWCTGCNTCLAACSDVHKTQGLQQHPRLALAKTSTITAPVVCHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAISASGSRPVNAHAQYVFQAEGSLKDGEENAPTQHALLRWEPGVQTVAVKCDLCDFLPEGPACVRACPNQALRLITGDSLQRQMKEKQRLAASWFANGGEDPLSLTQEQR" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 4} 1 -"MONOMER0-153" "hydrogenase 4 component B" ["YffF", "HyfB"] "MDALQLLTWSLILYLFASLASLFLLGLDRLAIKLSGITSLVGGVIGIISGITQLHAGVTLVARFAPPFEFADLTLRMDSLSAFMVLVISLLVVVCSLYSLTYMREYEGKGAAAMGFFMNIFIASMVALLVMDNAFWFIVLFEMMSLSSWFLVIARQDKTSINAGMLYFFIAHAGSVLIMIAFLLMGRESGSLDFASFRTLSLSPGLASAVFLLAFFGFGAKAGMMPLHSWLPRAHPAAPSHASALMSGVMVKIGIFGILKVAMDLLAQTGLPLWWGILVMAIGAISALLGVLYALAEQDIKRLLAWSTVENVGIILLAVGVAMVGLSLHDPLLTVVGLLGALFHLLNHALFKGLLFLGAGAIISRLHTHDMEKMGALAKRMPWTAAACLIGCLAISAIPPLNGFISEWYTWQSLFSLSRVEAVALQLAGPIAMVMLAVTGGLAVMCFVKMYGITFCGAPRSTHAEEAQEVPNTMIVAMLLLAALCVLIALSASWLAPKIMHIAHAFTNTPPATVASGIALVPGTFHTQVTPSLLLLLLLAMPLLPGLYWLWCRSRRAAFRRTGDAWACGYGWENAMAPSGNGVMQPLRVVFSALFRLRQQLDPTLRLNKGLAHVTARAQSTEPFWDERVIRPIVSATQRLAKEIQHLQSGDFRLYCLYVVAALVVLLIAIAV" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"MONOMER0-153" "hydrogenase 4 component B" ["YffF", "HyfB"] "MDALQLLTWSLILYLFASLASLFLLGLDRLAIKLSGITSLVGGVIGIISGITQLHAGVTLVARFAPPFEFADLTLRMDSLSAFMVLVISLLVVVCSLYSLTYMREYEGKGAAAMGFFMNIFIASMVALLVMDNAFWFIVLFEMMSLSSWFLVIARQDKTSINAGMLYFFIAHAGSVLIMIAFLLMGRESGSLDFASFRTLSLSPGLASAVFLLAFFGFGAKAGMMPLHSWLPRAHPAAPSHASALMSGVMVKIGIFGILKVAMDLLAQTGLPLWWGILVMAIGAISALLGVLYALAEQDIKRLLAWSTVENVGIILLAVGVAMVGLSLHDPLLTVVGLLGALFHLLNHALFKGLLFLGAGAIISRLHTHDMEKMGALAKRMPWTAAACLIGCLAISAIPPLNGFISEWYTWQSLFSLSRVEAVALQLAGPIAMVMLAVTGGLAVMCFVKMYGITFCGAPRSTHAEEAQEVPNTMIVAMLLLAALCVLIALSASWLAPKIMHIAHAFTNTPPATVASGIALVPGTFHTQVTPSLLLLLLLAMPLLPGLYWLWCRSRRAAFRRTGDAWACGYGWENAMAPSGNGVMQPLRVVFSALFRLRQQLDPTLRLNKGLAHVTARAQSTEPFWDERVIRPIVSATQRLAKEIQHLQSGDFRLYCLYVVAALVVLLIAIAV" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "MONOMER0-154" "hydrogenase 4 component C" ["HyfC"] "MRQTLCDGYLVIFALAQAVILLMLTPLFTGISRQIRARMHSRRGPGIWQDYRDIHKLFKRQEVAPTSSGLMFRLMPWVLISSMLVLAMALPLFITVSPFAGGGDLITLIYLLALFRFFFALSGLDTGSPFAGVGASRELTLGILVEPMLILSLLVLALIAGSTHIEMISNTLAMGWNSPLTTVLALLACGFACFIEMGKIPFDVAEAEQELQEGPLTEYSGAGLALAKWGLGLKQVVMASLFVALFLPFGRAQELSLACLLTSLVVTLLKVLLIFVLASIAENTLARGRFLLIHHVTWLGFSLAALAWVFWLTGL" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "MONOMER0-1541" "protein YjdP" ["YjdP"] "MKRFPLFLLFTLLTLSTVPAQADIIDDTIGNIQQAINDAYNPDRGRDYEDSRDDGWQREVSDDRRRQYDDRRRQFEDRRRQLDDRQRQLDQERRQLEDEERRMEDEYGR" [] [] 0 [] {} 0 -"MONOMER0-1561" "β-lactam resistance protein" ["Blr"] "MNRLIELTGWIVLVVSVILLGVASHIDNYQPPEQSASVQHK" ["CCO-MEMBRANE"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-1561" "β-lactam resistance protein" ["Blr"] "MNRLIELTGWIVLVVSVILLGVASHIDNYQPPEQSASVQHK" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-1562" "entericidin A lipoprotein, antidote to entericidin B" ["EcnA"] "MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-1563" "bacteriolytic entericidin B lipoprotein" ["YjeU", "EcnB"] "MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAATKAQQ" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 -"MONOMER0-1564" "protein HokC" ["Gef", "HokC", "HokC, Gef toxin; interferes with membrane function when in excess"] "MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE" ["CCO-PERI-BAC", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"MONOMER0-1581" "protein HokE" ["YbdY", "HokE"] "MLTKYALAAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVLAYEPKK" [] ["CCO-PERI-BAC", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 -"MONOMER0-1601" "small toxic polypeptide LdrA" ["LdrA"] "MTLAQFAMIFWHDLAAPILAGIITAAIVSWWRNRK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"MONOMER0-1602" "small toxic polypeptide LdrB" ["LdrB"] "MTLAQFAMTFWHDLAAPILAGIITAAIVGWWRNRK" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"MONOMER0-1603" "small toxic polypeptide LdrC" ["LdrC"] "MTLAQFAMIFWHDLAAPILAGIITAAIVSWWRNRK" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-1564" "small toxic polypeptide HokC" ["Gef", "HokC", "HokC, Gef toxin; interferes with membrane function when in excess"] "MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE" ["CCO-PERI-BAC", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"MONOMER0-1581" "small toxic polypeptide HokE" ["YbdY", "HokE"] "MLTKYALAAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVLAYEPKK" [] ["CCO-PERI-BAC", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"MONOMER0-1601" "small toxic polypeptide LdrA" ["LdrA"] "MTLAQFAMIFWHDLAAPILAGIITAAIVSWWRNRK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-1602" "small toxic polypeptide LdrB" ["LdrB"] "MTLAQFAMTFWHDLAAPILAGIITAAIVGWWRNRK" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-1603" "small toxic polypeptide LdrC" ["LdrC"] "MTLAQFAMIFWHDLAAPILAGIITAAIVSWWRNRK" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-1604" "toxin HokB" ["YdcB", "HokB", "small toxic membrane polypeptide"] "MKHNPLVVCLLIICITILTFTLLTRQTLYELRFRDGDKEVAALMACTSR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-1605" "small toxic polypeptide" ["HokA", "YiaZ"] "MPQKYRLLSLIVICFTLLFFTWMIRDSLCELHIKQESYELAAFLACKLKE" [] ["CCO-PERI-BAC", "CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-1641" "CPS-53 (KpLE1) prophage; prophage CPS-53 recombination directionality factor and response regulator inhibitor" ["TorI"] "MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLSRANG" [] [] 0 [] {} 0 "MONOMER0-1701" "putative phosphatidylethanolamine synthesis regulator GnsA" ["Sfa", "YccL", "GnsA"] "MNIEELKKQAETEIADFIAQKIAELNKNTGKEVSEIRFTAREKMTGLESYDVKIKIM" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "MONOMER0-185" "DNA-binding transcriptional dual regulator ModE" ["ModR", "ChlD", "ModE-MoO42-", "ModE"] "MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLYDLLAQIQQKAFDVLSDDDALPLNSLLAAISRFSLQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIATLC" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"CPD-3": 1} 1 -"MONOMER0-1922" "membrane-depolarizing toxin TisB" ["YsdB", "TisB", "toxic peptide TisB"] "MNLVDIAILILKLIVAALQLLDAVLKYLK" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 -"MONOMER0-1941" "membrane toxin DinQ" ["DinQ", "UV inducible membrane toxin DinQ"] "MIDKAIIVLGALIALLELIRFLLQLLN" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"MONOMER0-1922" "membrane-depolarizing toxin TisB" ["YsdB", "TisB", "toxic peptide TisB"] "MNLVDIAILILKLIVAALQLLDAVLKYLK" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-1941" "membrane toxin DinQ" ["DinQ", "UV inducible membrane toxin DinQ"] "MIDKAIIVLGALIALLELIRFLLQLLN" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-1981" "succinyl-diaminopimelate desuccinylase" ["MsgB", "DapE"] "MSCPVIELTQQLIRRPSLSPDDAGCQALLIERLQAIGFTVERMDFADTQNFWAWRGQGETLAFAGHTDVVPPGDADRWINPPFEPTIRDGMLFGRGAADMKGSLAAMVVAAERFVAQHPNHTGRLAFLITSDEEASAHNGTVKVVEALMARNERLDYCLVGEPSSIEVVGDVVKNGRRGSLTCNLTIHGVQGHVAYPHLADNPVHRAAPFLNELVAIEWDQGNEFFPATSMQIANIQAGTGSNNVIPGELFVQFNFRFSTELTDEMIKAQVLALLEKHQLRYTVDWWLSGQPFLTARGKLVDAVVNAVEHYNEIKPQLLTTGGTSDGRFIARMGAQVVELGPVNATIHKINECVNAADLQLLARMYQRIMEQLVA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 2} 1 "MONOMER0-2001" "tetrahydrodipicolinate succinylase" ["Ssa", "DapD"] "MQQLQNIIETAFERRAEITPANADTVTREAVNQVIALLDSGALRVAEKIDGQWVTHQWLKKAVLLSFRINDNQVIEGAESRYFDKVPMKFADYDEARFQKEGFRVVPPAAVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPSKDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "MONOMER0-2121" "putative PTS enzyme IIB component SgcB" ["SgcB", "EIIBSgc", "Enzyme IIBSgc"] "MKKILVACGTGMSTSTMIAHKLQEFLTEQGISATTAQCCLNEIPLNCNGMDLIVTSMRTNSDYGIPTLNGAALLTGINDDALKQQIKALLTQ" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"MONOMER0-2141" "inner membrane protein YmgF" ["YmgF", "inner membrane protein that interacts with cell division proteins"] "MNNSNNLDYFTLYIIFSIAFMLITLLVILIAKPSTGLGEVLVTINLLNALVWLAINLVNRLRERLVNHRDQQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"MONOMER0-2383" "DNA polymerase III subunit γ" ["DnaZ", "DnaX"] "MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKE" [] ["CCO-CYTOSOL"] 0 [] {} 0 +"MONOMER0-2141" "division septum component YmgF" ["YmgF", "inner membrane protein that interacts with cell division proteins"] "MNNSNNLDYFTLYIIFSIAFMLITLLVILIAKPSTGLGEVLVTINLLNALVWLAINLVNRLRERLVNHRDQQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-2383" "DNA polymerase III subunit gamma" ["DnaZ", "DnaX", "DNA polymerase III subunit γ"] "MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKE" [] ["CCO-CYTOSOL"] 0 [] {} 0 "MONOMER0-2488" "DNA-binding transcriptional dual regulator FlhC" ["FlaI", "FlhC"] "MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADIIPQLLDEQRVQAV" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 -"MONOMER0-2489" "inner membrane protein YhiM" ["YhiM", "inner membrane protein with a role in acid resistance"] "MNIYIGWLFKLIPLIMGLICIALGGFVLESSGQSEYFVAGHVLISLAAICLALFTTAFIIISQLTRGVNTFYNTLFPIIGYAGSIITMIWGWALLAGNDVMADEFVAGHVIFGVGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPVQAYSSLIGNCLIAVPVLLTLLGFIWSITLLRSADITPHYVAGHVLLGLTAICACLIGLVATIVHQTRNTFSTKEHWLWCYWVIFLGSITVLQGIYVLVSSDASARLAPGIILICLGMICYSIFSKVWLLALVWRRTCSLANRIPMIPVFTCLFCLFLASFLAEMAQTDMGYFIPSRVLVGLGAVCFTLFSIVSILEAGSAKK" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-2489" "inner membrane protein YhiM" ["YhiM", "inner membrane protein with a role in acid resistance"] "MNIYIGWLFKLIPLIMGLICIALGGFVLESSGQSEYFVAGHVLISLAAICLALFTTAFIIISQLTRGVNTFYNTLFPIIGYAGSIITMIWGWALLAGNDVMADEFVAGHVIFGVGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPVQAYSSLIGNCLIAVPVLLTLLGFIWSITLLRSADITPHYVAGHVLLGLTAICACLIGLVATIVHQTRNTFSTKEHWLWCYWVIFLGSITVLQGIYVLVSSDASARLAPGIILICLGMICYSIFSKVWLLALVWRRTCSLANRIPMIPVFTCLFCLFLASFLAEMAQTDMGYFIPSRVLVGLGAVCFTLFSIVSILEAGSAKK" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-2653" "putative uncharacterized protein YafF" ["YafF"] "MNEDDYKIRRGNAAELFSGIRHIAINILTNEKVFKAGLRRKMRKAAMDRNYLASVLAGSGLS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "MONOMER0-2654" "DUF987 domain-containing protein YkfH" ["YkfH"] "MKIISKRRAMTIYRQHPESRIFRYCTGKYQWHGSVCHYTGRDVPDIAGVLAVYAERRQDRNGPYTCLMSITLN" [] [] 0 [] {} 0 "MONOMER0-2656" "50S ribosomal subunit protein L36B" ["YkgO"] "MKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQGRKKKR" [] ["CCO-RIBOSOME"] 0 [] {} 0 "MONOMER0-2657" "DLP12 prophage; uncharacterized protein YlcG" ["YlcG"] "MMFEFNMAELLRHRWGRLRLYRFPGSVLTDYRILKNYAKTLTGAGV" [] [] 0 [] {} 0 -"MONOMER0-2658" "DLP12 prophage; putative prophage lysis lipoprotein RzoD" ["RzoD"] "MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPRPPAWIMQPPPDWQTPLNGIISPSERG" [] ["CCO-OUTER-MEM", "CCO-MEMBRANE"] 0 [] {} 0 +"MONOMER0-2658" "DLP12 prophage; putative prophage lysis lipoprotein RzoD" ["RzoD"] "MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPRPPAWIMQPPPDWQTPLNGIISPSERG" [] ["CCO-OUTER-MEM"] 0 [] {} 0 "MONOMER0-2659" "enterobactin biosynthesis protein YbdZ" ["YbdZ", "MbtH-like protein that enhances the catalytic function of EntF"] "MAFSNPFDDPQGAFYILRNAQGQFSLWPQQCVLPAGWDIVCQPQSQASCQQWLEAHWRTLTPTNFTQLQEAQ" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "MONOMER0-2660" "PF04328 family protein YbdD" ["YbdD"] "MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTYEEFFRERQDARYGGKGGARCC" [] [] 0 [] {} 0 "MONOMER0-2662" "inactive transposase YbfQ" ["YbfQ"] "MELKKLMEHISITPDYRQAWKVVHKLSDILLLTICAVISGAEGWEDIEDFGETHLDFLKQYGDFENGIPVHDTIARVVSQGKIT" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"MONOMER0-2663" "cytochrome bd-I accessory subunit CydX" ["YbgT"] "MWYFAWILGTLLACSFGVITALALEHVESGKAGQEDI" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"MONOMER0-2663" "cytochrome bd-I accessory subunit CydX" ["YbgT"] "MWYFAWILGTLLACSFGVITALALEHVESGKAGQEDI" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "MONOMER0-2665" "stress-induced bacterial acidophilic repeat motifs-containing protein YmdF" ["YmdF"] "MANHRGGSGNFAEDRERASEAGKKGGQHSGGNFKNDPQRASEAGKKGGKSSHGKSDN" [] ["CCO-CYTOSOL"] 0 [] {} 0 "MONOMER0-2666" "protein YcgI" ["YmgH", "YcgI"] "MHLSNGMESKSVDTRSIYRELGATLSYNMRLGNGMEMNPG*RRLCAKNLSMITG*R*IMTVISSMICRADVEYTRQLLKPHSAVRLADISGWGIAMVPVWNPRGTRWLV*TGR" [] ["CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-2667" "hypothetical protein YmjB" ["YmjB"] "MVRAGALNDYHAGENITIHFDMTKCHFFDAETEIAIR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "MONOMER0-2668" "putative uncharacterized protein YmjC" ["YmjC"] "MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNKMQTTSGKKVIQDR" [] [] 0 [] {} 0 "MONOMER0-2670" "Rac prophage; DUF1391 domain-containing protein YdaF" ["YdaF"] "MQKIDLGNNESLVCGVFPNQDGTFTAMTYTKSKTFKTETGARRWLEKHTVS" [] [] 0 [] {} 0 -"MONOMER0-2671" "Rac prophage; putative prophage outer membrane lipoprotein RzoR" ["RzoR"] "MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPPPPAWIMQPPPDWQTPLNGIISPSGNDW" [] ["CCO-OUTER-MEM", "CCO-MEMBRANE"] 0 [] {} 0 +"MONOMER0-2671" "Rac prophage; putative prophage outer membrane lipoprotein RzoR" ["RzoR"] "MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPPPPAWIMQPPPDWQTPLNGIISPSGNDW" [] ["CCO-OUTER-MEM"] 0 [] {} 0 "MONOMER0-2672" "DUF333 domain-containing protein YdbJ" ["YdbJ"] "MRAAFWVGCAALLLSACSSEPVQQATAAHVAPGLKASMSSSGEANCAMIGGSLSVARQLDGTAIGMCALPNGKRCSEQSLAAGSCGSY" [] ["CCO-PERI-BAC"] 0 [] {} 0 "MONOMER0-2673" "mRNA interferase toxin HicA" ["YncN", "HicA", "toxin of the HicA-HicB toxin-antitoxin system"] "MKQSEFRRWLESQGVDVANGSNHLKLRFHGRRSVMPRHPCDEIKEPLRKAILKQLGLS" [] [] 0 [] {} 0 "MONOMER0-2674" "Qin prophage; DUF3950 domain-containing protein YnfO" ["YnfO"] "MSTKNRTRRTTTRNIRFPNQMIEQINIALEQKGSGNFSAWVIEACRRRLCSEKRVSSEANKEKSDITELLRKQVRPD" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -3572,23 +3572,23 @@ "MONOMER0-2677" "DUF2766 domain-containing protein YecJ" ["YecJ"] "MSQPLNADQELVSDVVACQLVIKQILDVLDVIAPVEVREKMSSQLKNIDFTNHPAAADPVTMRAIQKAIALIELKFTPQGESH" [] ["CCO-CYTOSOL"] 0 [] {} 0 "MONOMER0-2678" "CP4-44 prophage; putative uncharacterized protein YoeF" ["YoeF"] "MAGVRQHGWRAIPAVCSEYGADTLPDRYRSDGRCLLFWQQAGISALKQELEVKTPYRAMNHPVIGVVTKADLASMEQISLVKSWLREAGAHNVLVTSAVNNNGVTELFALLHTEEGCC" [] ["CCO-CYTOSOL"] 0 [] {} 0 "MONOMER0-2680" "uncharacterized protein YehK" ["YehK"] "MIVQKELVAIYDYEVPVPEDPFSFRLEIHKCSELFTGSVYRLERFRLRPTFHQRDREDADPLINDALIYIRDECIDERKLRGESPETVIAIFNRELQNIFNQEIE" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"MONOMER0-2681" "UPF0387 family protein YohO" ["YohO"] "MRIAKIGVIALFLFMALGGIGGVMLAGYTFILRAG" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-2681" "UPF0387 family protein YohO" ["YohO"] "MRIAKIGVIALFLFMALGGIGGVMLAGYTFILRAG" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-2682" "undecaprenyl-phosphate-α-L-Ara4N flippase - ArnE subunit" ["YfbW"] "MIWLTLVFASLLSVAGQLCQKQATCFVAINKRRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGSTV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "MONOMER0-2683" "CPS-53 (KpLE1) prophage; putative uncharacterized protein YpdJ" ["YpdJ"] "MGYDSRLDHLAATSWYPFFNNVTTRGEIIEPYSLTLDEACQFLKIS" [] ["CCO-CYTOSOL"] 0 [] {} 0 "MONOMER0-2684" "PF12843 family protein YpeB" ["YpeB"] "MEKEQLIEIANTIMPFGKYKGRRLIDLPEEYLLWFARKDEFPAGKLGELMQITLLIKTEGLTQLVQPLKRPL" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"MONOMER0-2685" "PF13980 family protein YpfN" ["YpfN", "UPF0370 protein YpfN"] "MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFNDKWDDDDDWPKKDQPKK" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"MONOMER0-2686" "CP4-57 prophage; DUF987 domain-containing protein YpjJ" ["YpjJ"] "MRIISKRRAMTIYRQHPESRIFRYCTGKYQWHGSVCHYTGRDVPDITGVLAVYAERRRTAADRMLD" [] [] 0 [] {} 0 +"MONOMER0-2685" "PF13980 family protein YpfN" ["YpfN", "UPF0370 protein YpfN"] "MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFNDKWDDDDDWPKKDQPKK" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-2686" "CP4-57 prophage; DUF987 domain-containing protein YpjJ" ["LfgC", "YpjJ"] "MRIISKRRAMTIYRQHPESRIFRYCTGKYQWHGSVCHYTGRDVPDITGVLAVYAERRRTAADRMLD" [] [] 0 [] {} 0 "MONOMER0-2687" "alternative ribosome-rescue factor A" ["ArfA", "YhdL"] "MSRYQHTKGQIKDNAIEALLHDPLFRQRVEKNKKGKGSYMRKGKHGNRGNWEASGKKVNHFFTTGLLLSGAC" [] [] 0 [] {} 0 "MONOMER0-2688" "DUF2387 domain-containing protein YheV" ["YheV"] "MAIRKRFIAGAKCPACQAQDSMAMWRENNIDIVECVKCGHQMREADKEARDHVRKDEQVIGIFHPD" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"MONOMER0-2689" "putative lipoprotein YsaB" ["YsaB"] "MMMNAFFPAMALMVLVGCSIPSPVQKAQRVKVDPLRSLNMEALCKDQAAKRYNTGEQKIDVTAFEQFQGSYEMRGYTFRKEQFVCSFDADGHFLHLSMR" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-2689" "putative lipoprotein YsaB" ["YsaB"] "MMMNAFFPAMALMVLVGCSIPSPVQKAQRVKVDPLRSLNMEALCKDQAAKRYNTGEQKIDVTAFEQFQGSYEMRGYTFRKEQFVCSFDADGHFLHLSMR" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-2690" "protein YibT" ["YibT"] "MGKLGENVPLLIDKAVDFMASSQAFREYLKKLPPRNAIPSGIPDESVPLYLQRLEYYRRLYRPKQVEGQ" [] [] 0 [] {} 0 "MONOMER0-2691" "uncharacterized protein YicS" ["YicS"] "MKPTTLLLIFTFFAMPGIVYAESPFSSLQSAKEKTTVLQDLRKICTPQASLSDEAWEKLMLSDENNKQHIREAIVAMERNNQSNYWEALGKVECPDM" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 -"MONOMER0-2692" "membrane protein insertion efficiency factor" ["YidD"] "MAPPLSPGSRVLIALIRVYQRLISPLLGPHCRFTPTCSSYGIEALRRFGVIKGSWLTVKRVLKCHPLHPGGDDPVPPGPFDTREH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"MONOMER0-2693" "LptD oxidative maturation-associated lipoprotein" ["YifL", "LptM"] "MKNVFKALTVLLTLFSLTGCGLKGPLYFPPADKNAPPPTKPVETQTQSTVPDKNDRATGDGPSQVNY" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 -"MONOMER0-2694" "toxin of the GhoTS toxin-antitoxin system" ["GhoT", "YjdO"] "MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"MONOMER0-2692" "membrane protein insertion efficiency factor" ["YidD"] "MAPPLSPGSRVLIALIRVYQRLISPLLGPHCRFTPTCSSYGIEALRRFGVIKGSWLTVKRVLKCHPLHPGGDDPVPPGPFDTREH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-2693" "LptD oxidative maturation-associated lipoprotein" ["YifL", "LptM"] "MKNVFKALTVLLTLFSLTGCGLKGPLYFPPADKNAPPPTKPVETQTQSTVPDKNDRATGDGPSQVNY" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-2694" "toxin of the GhoTS toxin-antitoxin system" ["GhoT", "YjdO"] "MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-2695" "KpLE2 phage-like element; toxin of the TopAI-YjhQ toxin-antitoxin system, TopA inhibitor" ["YjhX", "TopAI"] "MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLIKSVNGQPYRINTTELNKVRAQLDNR" [] [] 0 [] {} 0 "MONOMER0-2696" "DUF1435 domain-containing protein YjjZ" ["YjjZ"] "MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPSCLALIAGIMLMIMNLNQG" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 -"MONOMER0-2697" "DUF1328 domain-containing protein YtjA" ["YtjA"] "MFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIILFLVSLFMGRKRP" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-2697" "DUF1328 domain-containing protein YtjA" ["YtjA"] "MFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIILFLVSLFMGRKRP" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-2726" "putative metal-chelating domain-containing protein YeiW" ["YeiW"] "MECRPGCGACCTAPSISSPIPGMPDGKPANTPCIQLDEQQRCKIFTSPLRPKVCAGLQASAEMCGNSRQQAMTWLIDLEMLTAP" [] [] 0 [] {} 0 "MONOMER0-2748" "IS3 element transposase" [] "MTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSLYESQLYNWRSKQQNQQTSSERELEMSTEIARLKRQLAERDEELAILQKAATILREAPEMKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQFRQHCDSVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASRKFSPVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSMSAKGCCYDNACVESFFHSLKVECIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGGLSPEQFENKNLA" [] [] 0 [] {} 0 "MONOMER0-2755" "InsAB' transposase" [] "MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTILRHLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ" [] [] 0 [] {} 0 @@ -3601,10 +3601,10 @@ "MONOMER0-2812" "uncharacterized protein YkfM" ["YkfM"] "MRLHVKLKEFLSMFFMAILFFPAFNASLFFTGVKPLYSIIKCSTEIFYDWRMLILCFGFMSFSFLNIHVILLTIIKSFLIKKTKVVNFATDITIQLTLIFLLIAIVIAPLIAPFVTGYVNTNYHPCGNNTGIFPGAIYIKNGMKCNNGYISRKEDSAVK" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-2813" "DLP12 prophage; uncharacterized protein YlcH" ["YlcH"] "MRTYNPNSLLPSQMQKCTCNSLHLAFDLCGGEA" [] [] 0 [] {} 0 "MONOMER0-2814" "DLP12 prophage; DUF3950 domain-containing protein YlcI" ["YlcI"] "MSTKNRTRRTTTRNIRFPNQMIEQINIALEQKGSGNFSAWVIEACRRRLTSEKRAYTSIKSDEE" [] [] 0 [] {} 0 -"MONOMER0-2817" "cytochrome bd-II accessory subunit AppX" ["CbdX", "AppX", "YccB"] "MWYLLWFVGILLMCSLSTLVLVWLDPRLKS" ["CCO-OUTER-MEM"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 +"MONOMER0-2817" "cytochrome bd-II accessory subunit AppX" ["CbdX", "AppX", "YccB"] "MWYLLWFVGILLMCSLSTLVLVWLDPRLKS" ["CCO-OUTER-MEM"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "MONOMER0-2818" "uncharacterized protein YmgI" ["YmgI"] "MSYSSFKIILIHVKNIIPIITATLILNYLNNSERSLVKQILIEDEIIVCATYLIPDI" [] ["CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-2819" "uncharacterized protein YmgJ" ["YmgJ"] "MSRRYSSATITLVILFCRRPHCRKISVRQYYQKRVIFYPTTLQRTACKKCLFLMRDIIISS" [] [] 0 [] {} 0 -"MONOMER0-282" "outer membrane porin PhoE" ["OmpE", "outer membrane pore protein E (E,Ic,NmpAB)", "PhoE", "outer membrane phosphoporin"] "MKKSTLALVVMGIVASASVQAAEIYNKDGNKLDVYGKVKAMHYMSDNASKDGDQSYIRFGFKGETQINDQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGLKYKDLGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQNLQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNKLNINNDDIVAVGMTYQF" [] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 1 +"MONOMER0-282" "outer membrane porin PhoE" ["OmpE", "outer membrane pore protein E (E,Ic,NmpAB)", "PhoE", "outer membrane phosphoporin"] "MKKSTLALVVMGIVASASVQAAEIYNKDGNKLDVYGKVKAMHYMSDNASKDGDQSYIRFGFKGETQINDQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGLKYKDLGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQNLQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNKLNINNDDIVAVGMTYQF" [] ["CCO-OUTER-MEM"] 0 [] {} 1 "MONOMER0-2820" "UPF0509 family protein YciZ" ["DeoL", "YciZ"] "MSEFDAQRVAERIDIVLDILVAGDYHSAIHNLEILKAELLRQVAESTPDIPKAPWEI" [] ["CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-2821" "uncharacterized protein YdgU" ["YdgU"] "MVGRYRFEFILIILILCALITARFYLS" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-2822" "cytochrome bd-I accessory subunit CydH" ["YnhF", "CydH", "CydY"] "MSTDLKFSLVTTIIVLGLIVAVGLTAALH" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 @@ -3615,9 +3615,9 @@ "MONOMER0-2827" "PF15596 family protein YibV" ["YibV"] "MADKAILWALISASTKEGRKACSLSYFACKAAEAELGLAYMAANDNKEFLTSLSNIMRYKIDAGLSESYTCYLLSKGKIIRPYLKNLNPLQLAADCIETVNKIKDKNKKNH" [] [] 0 [] {} 0 "MONOMER0-2828" "PF17089 family protein YjbT" ["YjbT"] "MKRNLIKVVKMKPYFAALMLSVSVLPAYAGPLGTADKADLPQSNVSSPMMAQSLRQPDLQPISTDRKTECFRLYTPDRKPGVNCVPDGSTGH" [] ["CCO-PERI-BAC"] 0 [] {} 0 "MONOMER0-2829" "uncharacterized protein YjbS" ["YjbS"] "MNISYVNSNKTTSLPVELDALNNKDISYAKDFFLYIETQLKIAKDFLDLEKKYQVLLQVKFFTHLLI" [] [] 0 [] {} 0 -"MONOMER0-2830" "putative lipoprotein YtcA" ["YtcA"] "MPTVLSRMAMQLKKTAWIIPVFMVSGCSLSPAIPVIGAYYPSWFFCAIASLILTLITRRVIQRANINLAFVGIIYTALFALYAMLFWLAFF" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"MONOMER0-2840" "KpLE2 phage-like element; uncharacterized protein YthA" ["YthA"] "MIKNFIFDNLIILAVPFMIKTSLKTNLIFFFLCVFVPHMAS" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"MONOMER0-2841" "two-component system connector SafA" ["SafA", "YneN"] "MHATTVKNKITQRDNYKEIMSAIVVVLLLTLTLIAIFSAIDQLSISEMGRIARDLTHFIINSLQG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-2830" "putative lipoprotein YtcA" ["YtcA"] "MPTVLSRMAMQLKKTAWIIPVFMVSGCSLSPAIPVIGAYYPSWFFCAIASLILTLITRRVIQRANINLAFVGIIYTALFALYAMLFWLAFF" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-2840" "KpLE2 phage-like element; uncharacterized protein YthA" ["YthA"] "MIKNFIFDNLIILAVPFMIKTSLKTNLIFFFLCVFVPHMAS" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-2841" "two-component system connector SafA" ["SafA", "YneN"] "MHATTVKNKITQRDNYKEIMSAIVVVLLLTLTLIAIFSAIDQLSISEMGRIARDLTHFIINSLQG" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-2842" "PtsG glucose transporter inhibitor" ["SgrT"] "MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES" [] [] 0 [] {} 0 "MONOMER0-2851" "IS150 protein InsAB" ["InsJK"] "MSKPKYPFEKRLEVVNHYFTTDDGYRIISARFGVPRTQVRTWVALYEKHGEKGLIPKPKGVSADPELRIKVVKAVIEQHMSLNQAAAHFMLAGSGSVARWLKVYEERGEAGLRALKIGTKRNIAISVDPEKAASALELSKDRRIEDLERQVRFLETRLMYLKKAESLSSSHEKVKVLNELRQFYPLDELLRAAEIPRSTFYYHLKALSKPDKYADVKKRISEIYHENRGRYGYRRVTLSLHREGKQINHKAVQRLMGTLSLKAAIKVKRYRSYRGEVGQTAPNVLQRDFKATRPNEKWVTDVTEFAVNGRKLYLSPVIDLFNNEVISYSLSERPVMNMVENMLDQAFKKLNPHEHPVLHSDQGWQYRMRRYQNILKEHGIKQSMSRKGNCLDNAVVECFFGTLKSECFYLDEFSNISELKDAVTEYIEYYNSRRISLKLKGLTPIEYRNQTYMPRV" [] [] 0 [] {} 0 "MONOMER0-2855" "toxic peptide IbsE" ["IbsE"] "MMKLVIILVVLLLLSFPTY" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -3633,23 +3633,23 @@ "MONOMER0-2872" "uncharacterized protein YmjD" ["YmjD"] "MKHIQIRNSDMDWHIAANNLG" [] [] 0 [] {} 0 "MONOMER0-2873" "uncharacterized protein YnbG" ["YnbG"] "MKYINCVYNINYKLKPHSHYK" [] [] 0 [] {} 0 "MONOMER0-2874" "uncharacterized membrane protein YpdK" ["YpdK"] "MKYFFMGISFMVIVWAGTFALMI" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 -"MONOMER0-2875" "uncharacterized protein YoaJ" ["YoaJ"] "MKKTTIIMMGVAIIVVLGTELGWW" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 -"MONOMER0-2876" "uncharacterized membrane protein YoaK" ["YoaK"] "MRIGIIFPVVIFITAVVFLAWFFIGGYAAPGA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"MONOMER0-2875" "uncharacterized protein YoaJ" ["YoaJ"] "MKKTTIIMMGVAIIVVLGTELGWW" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-2876" "uncharacterized membrane protein YoaK" ["YoaK"] "MRIGIIFPVVIFITAVVFLAWFFIGGYAAPGA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-2877" "uncharacterized protein YqeL" ["YqeL"] "MKDVDQIFDALDCHILREYLILLFYD" [] ["CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-2878" "uncharacterized protein YrbN" ["YrbN"] "MKIADQFHDELCRLAAINFEAHVLHG" [] ["CCO-MEMBRANE"] 0 [] {} 0 -"MONOMER0-2879" "uncharacterized membrane protein YohP" ["YohP"] "MKIILWAVLIIFLIGLLVVTGVFKMIF" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 -"MONOMER0-2880" "small regulatory membrane protein AzuC" ["AzuC"] "MKLRKILKSMFNNYCKTFKDVPPGNMFR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"MONOMER0-2881" "uncharacterized membrane protein YkgR" ["YkgR"] "MKENKVQQISHKLINIVVFVAIVEYAYLFLHFY" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-2879" "uncharacterized membrane protein YohP" ["YohP"] "MKIILWAVLIIFLIGLLVVTGVFKMIF" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-2880" "small regulatory membrane protein AzuC" ["AzuC"] "MKLRKILKSMFNNYCKTFKDVPPGNMFR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-2881" "uncharacterized membrane protein YkgR" ["YkgR"] "MKENKVQQISHKLINIVVFVAIVEYAYLFLHFY" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-2882" "cell envelope stress response protein YqcG" ["YqcG", "small protein involved in the cell envelope stress response"] "MSEENKENGFNHVKTFTKIIFIFSVLVFNDNEYKITDAAVNLFIQI" [] ["CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-2883" "uncharacterized protein YqfG" ["YqfG"] "MNFLMRAIFSLLLLFTLSIPVISDCVAMAIESRFKYMMLLF" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-2884" "uncharacterized protein YshB" ["YshB"] "MLESIINLVSSGAVDSHTPQTAVAAVLCAAMIGLFS" [] ["CCO-MEMBRANE"] 0 [] {} 0 -"MONOMER0-2885" "uncharacterized protein YmiA" ["YmiA"] "MRLAMPSGNQEPRRDPELKRKAWLAVFLGSALFWVVVALLIWKVWG" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"MONOMER0-2885" "uncharacterized protein YmiA" ["YmiA"] "MRLAMPSGNQEPRRDPELKRKAWLAVFLGSALFWVVVALLIWKVWG" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-2886" "uncharacterized protein YciX" ["YciX"] "MVGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFIELFAEDDQPKQ" [] [] 0 [] {} 0 "MONOMER0-341" "outer membrane phospholipase A" ["PldA", "OMPLA"] "MRTLQGWLLPVFMLPMAVYAQEATVKEVHDAPAVRGSIIANMLQEHDNPFTLYPYDTNYLIYTQTSDLNKEAIASYDWAENARKDEVKFQLSLAFPLWRGILGPNSVLGASYTQKSWWQLSNSEESSPFRETNYEPQLFLGFATDYRFAGWTLRDVEMGYNHDSNGRSDPTSRSWNRLYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLKIGYHLGDAVLSAKGQYNWNTGYGGAELGLSYPITKHVRLYTQVYSGYGESLIDYNFNQTRVGVGVMLNDLF" ["CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {"CA+2": 3} 1 "MONOMER0-4201" "leader peptide MgtL" ["MgtL"] "MEPDPTPLPRRRLKLFR" [] [] 0 [] {} 0 -"MONOMER0-4214" "small regulatory membrane protein PmrR" ["PmrR"] "MKNRVYESLTTVFSVLVVSSFLYIWFATY" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-4214" "small regulatory membrane protein PmrR" ["PmrR"] "MKNRVYESLTTVFSVLVVSSFLYIWFATY" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-4216" "small protein MntS" ["MntS"] "MNEFKRCMRVFSHSPFKVRLMLLSMLCDMVNNKPQQDKPSDK" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"MONOMER0-422" "2,3-diketo-L-gulonate:Na+ symporter - membrane subunit" ["YiaM"] "MKKILEAILAINLAVLSCIVFINIILRYGFQTSILSVDELSRYLFVWLTFIGAIVAFMDNAHVQVTFLVEKLSPAWQRRVALVTHSLILFICGALAWGATLKTIQDWSDYSPILGLPIGLMYAACLPTSLVIAFFELRHLYQLITRSNSLTSPPQGA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"MONOMER0-422" "2,3-diketo-L-gulonate:Na+ symporter - membrane subunit" ["YiaM"] "MKKILEAILAINLAVLSCIVFINIILRYGFQTSILSVDELSRYLFVWLTFIGAIVAFMDNAHVQVTFLVEKLSPAWQRRVALVTHSLILFICGALAWGATLKTIQDWSDYSPILGLPIGLMYAACLPTSLVIAFFELRHLYQLITRSNSLTSPPQGA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "MONOMER0-4223" "D-galactose 1-dehydrogenase" ["Dgd"] null [] ["CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-4224" "protein IroK" ["IroK", "small protein IroK"] "MKPALRDFIAIVQERLASVTA" [] ["CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-4225" "IS1 protein InsA" ["InsA5"] "MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTILRHLKNSGRSR" [] [] 0 [] {} 0 @@ -3692,49 +3692,49 @@ "MONOMER0-4347" "IS5 transposase and trans-activator" ["InsH21"] "MSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMVEVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRADQMIRQWERSH" [] [] 0 [] {} 0 "MONOMER0-4349" "uncharacterized protein YtiA" ["YtiA"] "MKEFLFLFHSTVGVIQTRKALQAAGMTFRVSDIPRDLRGGCGLCIWLTCPPGEEIQWVIPGLTESIYCQQDGVWRCIAHYGVSPR" [] ["CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-4368" "putative protein YmiB" ["YmiB"] "MTYMKLTAAKRIVFFIYLFVIQFWKNASFQTKVS" [] ["CCO-MEMBRANE"] 0 [] {} 0 -"MONOMER0-4369" "Qin prophage; putative lipoprotein RzoQ" ["RzoQ"] "MRNRNLLKFLPGLLICLIVLTSCVPKQKNMPYALTQRSIPQILPLPSEAKQPKPPKECSPTCSEILQQKLSFMLKLLTNATSQE" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-4369" "Qin prophage; putative lipoprotein RzoQ" ["RzoQ"] "MRNRNLLKFLPGLLICLIVLTSCVPKQKNMPYALTQRSIPQILPLPSEAKQPKPPKECSPTCSEILQQKLSFMLKLLTNATSQE" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-4382" "soluble Cu+ chaperone" ["YbaR", "CopA", "CopA(Z)"] "MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSITEAHVTGTASAEQLIETIKQAGYDASVSHPKG" [] [] 0 [] {} 0 -"MONOMER0-4386" "inactive ferrous iron permease EfeU" ["YcdN", "EfeU"] "MFVPFLIMLREGLEAALIVSLIASYLKRTQRGRWIV*CGLACCLPLRCAWAWVSSLTKPPANFRKKNRNCLKVSWR*SPW*SLPGWFSGCAKCRATSKCNWNRQSIAHCSVEIIMAGRW**WSFLPLQGKGWSRSFSCWRHFNKMSGSGRRWVQCSVLLLPWC*ASCSTGAVFASILVHFLNGPACLFSSSPQGWQLVPFAHFMKPDCGTTFRKSPSI*VRCSQLTRCLAR*WKGFLAIRKRRASAKSPSGLFISSRRWWHLLCHHAQGRQRLAP" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-4386" "inactive ferrous iron permease EfeU" ["YcdN", "EfeU"] "MFVPFLIMLREGLEAALIVSLIASYLKRTQRGRWIV*CGLACCLPLRCAWAWVSSLTKPPANFRKKNRNCLKVSWR*SPW*SLPGWFSGCAKCRATSKCNWNRQSIAHCSVEIIMAGRW**WSFLPLQGKGWSRSFSCWRHFNKMSGSGRRWVQCSVLLLPWC*ASCSTGAVFASILVHFLNGPACLFSSSPQGWQLVPFAHFMKPDCGTTFRKSPSI*VRCSQLTRCLAR*WKGFLAIRKRRASAKSPSGLFISSRRWWHLLCHHAQGRQRLAP" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-4390" "iraD leader peptide" ["IdlP"] "MENEHQYSGARCSGQAAYVAKRQECAK" [] [] 0 [] {} 0 -"MONOMER0-4391" "protein YtiC" ["YtiC"] "MPVNGIFDVFDMLSIYIIYKLIVSNNTWLIMRK" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-4391" "protein YtiC" ["YtiC"] "MPVNGIFDVFDMLSIYIIYKLIVSNNTWLIMRK" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-4392" "protein YtiD" ["YtiD"] "MADYAEINNFPPELSSSGDKYFHLRNYSEYSEYTSGFFLSLMIFIKS" [] [] 0 [] {} 0 "MONOMER0-4393" "protein YmcF" ["YmcF"] "MTQHLHFRCPCCHGSQYRTSAFDVTERNPLGAKCIFCKSTMITFDNVALQIRTDHAPLDFTK" [] [] 0 [] {} 0 "MONOMER0-4394" "Qin prophage; protein YnfQ" ["YnfQ"] "MTNHIHFRCPCCHGSQYRTSSFDVSDMNPFGAKCIFCKSMMITFDNISQYLNASRLSLDLKK" [] [] 0 [] {} 0 "MONOMER0-4395" "protein YpaA" ["YpaA"] "MTIAERLRQEGHQIGWQEGKLEGLHEQAIKIALRMLEQGFDRDQVLAATQLSEADLAANNH" [] ["CCO-CYTOSOL"] 0 [] {} 0 "MONOMER0-4396" "rpoE leader peptide" ["RseD"] "MIRLQHDKQKQMRYGTLQKRDTLTLCLLKLQLMEWRFDSAWKFGLGRLYLG" [] [] 0 [] {} 0 -"MONOMER0-4397" "heat shock-induced protein GndA" ["GndA"] "MLLLIPSNHISIKETSSLMVVTPSSRTLFVVIVSFQQRALTSSVPVFLAVKRGR" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"MONOMER0-4397" "heat shock-induced protein GndA" ["GndA"] "MLLLIPSNHISIKETSSLMVVTPSSRTLFVVIVSFQQRALTSSVPVFLAVKRGR" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-4403" "protein YabR" ["YabR"] "MKRNDKILHYRGLN" [] [] 0 [] {} 0 "MONOMER0-4404" "protein YacM" ["YacM"] "MIIKTLKMSARKRN" [] [] 0 [] {} 0 "MONOMER0-4405" "protein YadW" ["YadW"] "MAIIIGLEFAQLPMSFGAKYE" [] ["CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-4406" "CP4-6 prophage; protein YkgV" ["YkgV"] "MSAFKLPDTSQSQLISTAELAKIISYKSQTIRKWLCQDKLPEGLPRPKQINGRHYWLRKDVLDFIDTFSVRESL" [] [] 0 [] {} 0 -"MONOMER0-4407" "protein YahV" ["YahV"] "MCDILLNVLNIVFIGIAIILVIIC" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"MONOMER0-4408" "protein YkiC" ["YkiC"] "MNYKAFTQIAIDLLSAKLCNCTQAIMTHIIASFLAFMFF" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-4407" "protein YahV" ["YahV"] "MCDILLNVLNIVFIGIAIILVIIC" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-4408" "protein YkiC" ["YkiC"] "MNYKAFTQIAIDLLSAKLCNCTQAIMTHIIASFLAFMFF" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-4409" "protein YkiD" ["YkiD"] "MTQRPWSKLQRKTHNIAALKIIARRSE" [] [] 0 [] {} 0 "MONOMER0-4410" "DLP12 prophage; protein YlcJ" ["YlcJ"] "MSLVLCFLLMSLFFMYSFVLSRLWRKKIAIRLLLYIQDNVTLIVFLNKK" [] ["CCO-MEMBRANE"] 0 [] {} 0 -"MONOMER0-4411" "protein YldA" ["YldA"] "MAEAFYILIGFLIMAAIIVMAVLYLENHS" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-4411" "protein YldA" ["YldA"] "MAEAFYILIGFLIMAAIIVMAVLYLENHS" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-4412" "protein YbgU" ["YbgU"] "MRKSYEVGISPKINLCNSVEVLTNSFGTVISGRQV" [] ["CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-4413" "protein YliM" ["YliM"] "METFCYMKWPVRHHKSRRVSH" [] [] 0 [] {} 0 "MONOMER0-4414" "protein YmdG" ["YmdG"] "MKNSVAEH" [] [] 0 [] {} 0 "MONOMER0-4415" "protein YmgK" ["YmgK"] "MFSKLAQSSIKAMF" [] ["CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-4416" "protein YmgL" ["YmgL"] "MEIKVQRLSLWMINTVFLLSPINNHQTNTINLIFEM" [] ["CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-4417" "protein YmgM" ["YmgM"] "MDDKQLQAQAAFSKASQPAIDASLNLRFSFLFSHPYANLQHFIIFFLGHRPDHPGKLYLVTDNRCRA" [] [] 0 [] {} 0 -"MONOMER0-4418" "protein YmiC" ["YmiC"] "MINTNMKYWSWMGAFSLSMLFWAELLWIITH" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-4418" "protein YmiC" ["YmiC"] "MINTNMKYWSWMGAFSLSMLFWAELLWIITH" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-4419" "protein YmjE" ["YmjE"] "MPMIKSPHGEGGCVCAPPATDWTPPPLLPLLNRFDFRSTRPQTLLRRGGSNYGY" [] [] 0 [] {} 0 "MONOMER0-4420" "protein YnaL" ["YnaL"] "MTTLIYLQIPVPEPIPGDPVPVPDPIPRPQPMPDPPPDEEPIKLSHRERRSARIRAC" [] [] 0 [] {} 0 -"MONOMER0-4421" "Rac prophage; protein YnaM" ["YnaM"] "MNSILIITSLLIIFSIFSHALIKLGIGISNNPDKTDV" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"MONOMER0-4422" "protein YncO" ["YncO"] "MIYITIFMILPCPVPCSHVFLYVFYIFLFLVLFIMTIYQSSQKLHFSNCYHNNQHHNSLHN" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-4421" "Rac prophage; protein YnaM" ["YnaM"] "MNSILIITSLLIIFSIFSHALIKLGIGISNNPDKTDV" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-4422" "protein YncO" ["YncO"] "MIYITIFMILPCPVPCSHVFLYVFYIFLFLVLFIMTIYQSSQKLHFSNCYHNNQHHNSLHN" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-4423" "protein YddY" ["YddY"] "MVQLVDLARCVSF" [] ["CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-4424" "protein YneP" ["YneP"] "MTKHPTGIYVGCLVKVIRRRLRMELKESVINYSPFVLQHP" [] [] 0 [] {} 0 -"MONOMER0-4425" "Qin prophage; protein YnfT" ["YnfT"] "MNSILIITSLLIIFSIFSHALIKLGIGISNNPDKTDV" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-4425" "Qin prophage; protein YnfT" ["YnfT"] "MNSILIITSLLIIFSIFSHALIKLGIGISNNPDKTDV" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-4426" "Qin prophage; protein YnfR" ["YnfR"] "MKAPSGAFLLGVYSMDTHILR" [] ["CCO-MEMBRANE"] 0 [] {} 0 -"MONOMER0-4427" "Qin prophage; protein YnfS" ["YnfS"] "MNNPVCLDDWLIGFKSLCCTLAVIALLII" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-4427" "Qin prophage; protein YnfS" ["YnfS"] "MNNPVCLDDWLIGFKSLCCTLAVIALLII" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-4428" "protein YnfP" ["YnfP"] "MTIEKHERSTKDLVKAAVSGWLGTALEFMDFKSHAC" [] [] 0 [] {} 0 "MONOMER0-4429" "protein YoaL" ["YoaL"] "MDRHRRHFSIRPFNACLSGTLCRTFRLHFVVTPALFLASNSYSLSRSLSWNS" [] [] 0 [] {} 0 "MONOMER0-4430" "protein YecU" ["YecU"] "MIKIFIGHYINVFYSTADITLKKQPLLFLAKLMVYSAALTFFTANFHCNMTRKINEYA" [] ["CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-4431" "protein YqfH" ["YqfH"] "MINQVSVYRQPPVLSGCRQVKTI" [] [] 0 [] {} 0 "MONOMER0-4432" "protein YqfI" ["YqfI"] "MSKNTKSKNNGIRKYNAKTEVKLVYFK" [] [] 0 [] {} 0 "MONOMER0-4433" "protein YqhI" ["YqhI"] "MPRLTAKDFPQELLDYYDYYAHGKISKREFLNLAAKCGRRDDGISVV" [] [] 0 [] {} 0 -"MONOMER0-4434" "protein YqiD" ["YqiD"] "MFIAWYWIVLIALVVVGYFLHLKRYCRAFRQDRDALLEARNKYLNSTREETAEKVE" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-4434" "protein YqiD" ["YqiD"] "MFIAWYWIVLIALVVVGYFLHLKRYCRAFRQDRDALLEARNKYLNSTREETAEKVE" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-4435" "protein YsdD" ["YsdD"] "MTIDKNWLNRSNKDPGRSLRFTHQPV" [] [] 0 [] {} 0 "MONOMER0-4436" "CP4-6 prophage; protein YkgS" ["YkgS"] "MRMIGLLYDFKDYASKMAENMARLAALLHYFSGDGGDISVTG" [] ["CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-4440" "IS1 protein InsB" ["InsB3"] "MPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVEQHDKVIGHYLNIKHYQ" [] [] 0 [] {} 0 @@ -3779,7 +3779,7 @@ "MONOMER0-4505" "protein YsaE" ["YsaE"] "MRNAVSKAGIISRRRLLLFQFAG" [] ["CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-4506" "putative translational regulatory protein BaxL" ["BaxL"] "MIKSDQET" [] [] 0 [] {} 0 "MONOMER0-4507" "protein YbiE" ["YbiE"] "MRLSANRQGNTCAGRSVNA" [] [] 0 [] {} 0 -"MONOMER0-4508" "protein YibX" ["YibX"] "MEKIPIRPFSDPASIISLCRCTLENSNAPLSLLCSATNKFILSARDSADLNEKGDFMNIFKPISYIASLAPREVTLLALV" [] ["CCO-MEMBRANE"] 0 [] {} 0 +"MONOMER0-4508" "small protein YibX" ["YibX"] "MEKIPIRPFSDPASIISLCRCTLENSNAPLSLLCSATNKFILSARDSADLNEKGDFMNIFKPISYIASLAPREVTLLALV" [] ["CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-4509" "protein YibX-S" ["YibX", "YibX-S"] "MNIFKPISYIASLAPREVTLLALV" [] ["CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-4510" "protein YibY" ["YibY"] "MIIGMLRAHMITSLSPIPTMPSVNINKPKARFLYAI" [] ["CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-4511" "protein YicU" ["YicU"] "MTSDYRVSPIKKSRPAMSK" [] [] 0 [] {} 0 @@ -3788,14 +3788,14 @@ "MONOMER0-4514" "protein YtgA" ["YtgA"] "MSIIILATISTTQENK" [] ["CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-4515" "protein YkiE" ["YkiE"] "MGWSLCFWHVSVRMTHDVVCYY" [] ["CCO-MEMBRANE"] 0 [] {} 0 "MONOMER0-4516" "protein YthB" ["YthB"] "MNKLPAHLSRQNCKIASTNLSEIIPRRAAVLK" [] [] 0 [] {} 0 -"MONOMER0-4519" "ClpB80" ["HtpM", "ClpB", "ClpB79"] "MNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ" [] [] 0 [] {} 0 -"MONOMER0-4521" "PBP1Bγ" ["PonB", "PbpF", "MrcB", "penicillin binding protein 1Bγ"] "MPRKGKGKGKGRKPRGKRGWLWLLLKLAIVFAVLIAIYGVYLDQKIRSRIDGKVWQLPAAVYGRMVNLEPDMTISKNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFDFPDSKEGQVRARLTFDGDHLATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPRSGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSERSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQQIIDQELYDMLSARPLGVQPRGGVISPQPAFMQLVRQELQAKLGDKVKDLSGVKIFTTFDSVAQDAAEKAAVEGIPALKKQRKLSDLETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPKIYRLNTWIADAPIALRQPNGQVWSPQNDDRRYSESGRVMLVDALTRSMNVPTVNLGMALGLPAVTETWIKLGVPKDQLHPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTITWVGRDNNQPTKLYGASGAMSIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGGMRILPVWTSDPQSLCQQSEMQQQPSGNPFDQSSQPQQQPQQQPAQQEQKDSDGVAGWIKDMFGSN" [] [] 0 [] {} 1 -"MONOMER0-4524" "McrBS" ["RglB", "McrB"] "MSKTESYCLEDALNDLFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYIFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLLNKKAEPSFVESLCQKMNELNQEISKEATILGKGFRIGHSYFCCGLEDGTSPDTQWLNEIVMTDIAPLLEEYFFDDPYKQQKWTNKLLGDS" [] [] 0 [] {} 0 +"MONOMER0-4519" "ClpB80" ["HtpM", "ClpB", "ClpB79", "truncated ClpB"] "MNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ" [] [] 0 [] {} 0 +"MONOMER0-4521" "PBP-1Bgamma" ["PonB", "PbpF", "MrcB", "penicillin binding protein 1Bγ"] "MPRKGKGKGKGRKPRGKRGWLWLLLKLAIVFAVLIAIYGVYLDQKIRSRIDGKVWQLPAAVYGRMVNLEPDMTISKNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFDFPDSKEGQVRARLTFDGDHLATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPRSGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSERSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQQIIDQELYDMLSARPLGVQPRGGVISPQPAFMQLVRQELQAKLGDKVKDLSGVKIFTTFDSVAQDAAEKAAVEGIPALKKQRKLSDLETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPKIYRLNTWIADAPIALRQPNGQVWSPQNDDRRYSESGRVMLVDALTRSMNVPTVNLGMALGLPAVTETWIKLGVPKDQLHPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTITWVGRDNNQPTKLYGASGAMSIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGGMRILPVWTSDPQSLCQQSEMQQQPSGNPFDQSSQPQQQPQQQPAQQEQKDSDGVAGWIKDMFGSN" [] [] 0 [] {} 1 +"MONOMER0-4524" "mcrB-S" ["RglB", "McrB"] "MSKTESYCLEDALNDLFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYIFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLLNKKAEPSFVESLCQKMNELNQEISKEATILGKGFRIGHSYFCCGLEDGTSPDTQWLNEIVMTDIAPLLEEYFFDDPYKQQKWTNKLLGDS" [] [] 0 [] {} 0 "MONOMER0-4532" "leader peptide SpeFL" ["SpeFL"] "MENNSRTMPHIRRTTHIMKFAHRNSFDFHFFNAR" [] [] 0 [] {} 0 "MONOMER0-4534" "CobB-S" ["YcfY", "CobB"] "MEKPRVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKLLKGLKAGSIA" [] [] 0 [] {} 0 "MONOMER0-4538" "translation initiation factor IF-2β" ["SsyG", "InfB", "IF-2β", "β1"] "MSNQQDDMTKNAQAEKARREQEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTDNAEPTEDSSDYHVTTSQHARQAEDESDREVEGGRGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRTGDVIEVFEIIEIQRTIA" [] [] 0 [] {} 0 "MONOMER0-4539" "translation initiation factor IF-2β'" ["SsyG", "InfB", "IF2-β'", "β2"] "MTKNAQAEKARREQEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTDNAEPTEDSSDYHVTTSQHARQAEDESDREVEGGRGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRTGDVIEVFEIIEIQRTIA" [] [] 0 [] {} 0 -"MONOMER0-4540" "putative toxic protein TimP" ["TimP"] "MKIRCFCIVLIVSGALLTEVNNNRSLSGDNLLVVNNLQSSK" [] [] 0 [] {} 0 +"MONOMER0-4540" "putative toxic protein TimP" ["TimP"] "MKIRCFCIVLIVSGALLTEVNNNRSLSGDNLLVVNNLQSSK" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-4543" "protein YkfO" ["YkfO"] "MSTTYQCIVR" [] [] 0 [] {} 0 "MONOMER0-4544" "protein YmgN" ["YmgN"] "MAFSELNIDILTRSKARGG" [] [] 0 [] {} 0 "MONOMER0-4545" "protein YnhH" ["YnhH"] "MDCRTQRLKNRHSRWAETQAHIPLHAFSMSPILRARHHHFRNTGFAFRQCAQKASFSHPSQLKD" [] [] 0 [] {} 0 @@ -3806,34 +3806,34 @@ "MONOMER0-4550" "protein YtiE" ["YtiE"] "MLMTICNRYTF" [] [] 0 [] {} 0 "MONOMER0-4551" "protein YtjE" ["YtjE"] "MSRFIFYKIILSKQKDM" [] [] 0 [] {} 0 "MONOMER0-4552" "protein YtcB" ["YtcB"] "MHLQLIKDNIHSVVICYT" [] [] 0 [] {} 0 -"MONOMER0-4560" "small protein SpfP" ["SpfP"] "MFYLSDLLLHVIGFG" [] [] 0 [] {} 0 +"MONOMER0-4560" "dual-function small protein SpfP" ["SpfP"] "MFYLSDLLLHVIGFG" [] [] 0 [] {} 0 "MONOMER0-4561" "putative transcriptional regulator XtpA" ["XtpA"] "MFVWGLFCILRIALKPDRKYAVRLISKTAISSSGRADDNQDCCMVRGSRPRWRSNFSKLF" [] [] 0 [] {} 0 "MONOMER0-5" "N-acetylmuramic acid-specific PTS enzyme IICB component / anhydro-N-acetylmuramic acid transporter" ["MurP", "YfeV", "EIIBCNAcMur", "Enzyme IIBCNAcMur"] "MAKEISSELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVDPNIKTLEGVKGVILTSDQVQVVFGPGKAHRAAKAMSELLGEAPVQDAAEIAAQNKRQLKAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIATVMHVPADAQGTLPDALNFMKVFSKGLFTFLVILVGYNAAQAFGGTGVNGAIIAALFLLGYNPAATTGYYAGFHDFFGLPIDPRGNIIGVLIAAWACARIEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIMPLGGWLFEGMSWLFMHLNSNPFGCAVLAGLFLIAVVFGVHQGFIPVYLALMDSQGFNSLFPILSMAGAGQVGAALALYWRAQPHSALRSQVRGAIIPGLLGVGEPLIYGVTLPRMKPFVTACLGGAAGGLFIGLIAWWGLPMGLNSAFGPSGLVALPLMTSAQGILPAMAVYAGGILVAWVCGFIFTTLFGCRNVNLD" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 "MONOMER0-541" "NAD kinase" ["YfjE", "NadK", "YfjB"] "MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCTKGYEVIVEQQIAHELQLKNVKTGTLAEIGQLADLAVVVGGDGNMLGAARTLARYDIKVIGINRGNLGFLTDLDPDNAQQQLADVLEGHYISEKRFLLEAQVCQQDCQKRISTAINEVVLHPGKVAHMIEFEVYIDEIFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVINSSSTIRLRFSHRRNDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDYSYFNTLSTKLGWSKKLF" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"MONOMER0-561" "glycolate dehydrogenase, putative iron-sulfur subunit" ["YghL", "Gox", "GlcF"] "MQTQLTEEMRQNARALEADSILRACVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGNEVTLKTQEHLDRCLTCRNCETTCPSGVRYHNLLDIGRDIVEQKVKRPLPERILREGLRQVVPRPAVFRALTQVGLVLRPFLPEQVRAKLPAETVKAKPRPPLRHKRRVLMLEGCAQPTLSPNTNAATARVLDRLGISVMPANEAGCCGAVDYHLNAQEKGLARARNNIDAWWPAIEAGAEAILQTASGCGAFVKEYGQMLKNDALYADKARQVSELAVDLVELLREEPLEKLAIRGDKKLAFHCPCTLQHAQKLNGEVEKVLLRLGFTLTDVPDSHLCCGSAGTYALTHPDLARQLRDNKMNALESGKPEMIVTANIGCQTHLASAGRTSVRHWIEIVEQALEKE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {"CPD-7": 2} 1 +"MONOMER0-561" "glycolate dehydrogenase, [Fe-S] subunit" ["YghL", "Gox", "GlcF", "glycolate dehydrogenase, iron-sulfur subunit"] "MQTQLTEEMRQNARALEADSILRACVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGNEVTLKTQEHLDRCLTCRNCETTCPSGVRYHNLLDIGRDIVEQKVKRPLPERILREGLRQVVPRPAVFRALTQVGLVLRPFLPEQVRAKLPAETVKAKPRPPLRHKRRVLMLEGCAQPTLSPNTNAATARVLDRLGISVMPANEAGCCGAVDYHLNAQEKGLARARNNIDAWWPAIEAGAEAILQTASGCGAFVKEYGQMLKNDALYADKARQVSELAVDLVELLREEPLEKLAIRGDKKLAFHCPCTLQHAQKLNGEVEKVLLRLGFTLTDVPDSHLCCGSAGTYALTHPDLARQLRDNKMNALESGKPEMIVTANIGCQTHLASAGRTSVRHWIEIVEQALEKE" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {"CPD-7": 2} 1 "MONOMER0-6" "putative PTS enzyme IIC component FryC" ["YpdG", "FryC", "Enzyme IICFry", "EIICFry"] "MAIKKRSATVVPGASGAAAAVKNPQASKTSFWGELPQHVMSGISRMVPTLIMGGVILAFSQLIAYSWLKIPAEIGIMDALNSGKFSGFDLSLLKFAWLSQSFGGVLFGFAIPMFAAFVANSIGGKLAFPAGFIGGLMSTQPTQLLNFDPSTMQWATSSPVPSTFIGALIISIVAGYLVKWMNQKIQLPDFLLAFKTTFLLPILSAIFVMLAMYYVITPFGGWINGGIRTVLTAAGEKGALMYAMGIAAATAIDLGGPINKAAGFVAFSFTTDHVLPVTARSIAIVIPPIGLGLATIIDRRLTGKRLFNAQLYPQGKTAMFLAFMGISEGAIPFALESPITAIPSYMVGAIVGSTAAVWLGAVQWFPESAIWAWPLVTNLGVYMAGIALGAVITALMVVFLRLMMFRKGKLLIDSL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "MONOMER0-741" "PF06786 family protein YaeP" ["YaeP", "UPF0253 family protein YaeP"] "MEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNEMAADDALSEAVREKAAYAAANLLVSDYVNE" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"MONOMER0-761" "uncharacterized protein YncL" ["YncL"] "MNVSSRTVVLINFFAAVGLFTLISMRFGWFI" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MONOMER0-761" "uncharacterized protein YncL" ["YncL"] "MNVSSRTVVLINFFAAVGLFTLISMRFGWFI" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-762" "uncharacterized protein YpfM" ["YpfM"] "MIERELGNWKDFIEVMLRK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "MONOMER0-765" "uncharacterized protein YciY" ["YciY"] "MKRSRTEVGRWRMQRQASRRKSRWLEGQSRRNMRIHSIRKCILNKQRNSLLFAIYNI" [] [] 0 [] {} 0 -"MONOMER0-766" "small protein MgtS" ["MgtS", "YneM"] "MLGNMNVFMAVLGIILFSGFLAAYFSHKWDD" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"MONOMER0-766" "small protein MgtS" ["MgtS", "YneM"] "MLGNMNVFMAVLGIILFSGFLAAYFSHKWDD" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MONOMER0-82" "small conductance mechanosensitive channel YnaI" ["YnaI"] "MIAELFTNNALNLVIIFGSCAALILMSFWFRRGNRKRKGFLFHAVQFLIYTIIISAVGSIINYVIENYKLKFITPGVIDFICTSLIAVILTIKLFLLINQFEKQQIKKGRDITSARIMSRIIKITIIVVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRSPDRNIEGTVAEIGWRITKITTFDNRPLYVPNSLFSSISVENPGRMTNRRITTTIGLRYEDAAKVGVIVEAVREMLKNHPAIDQRQTLLVYFNQFADSSLNIMVYCFTKTTVWAEWLAAQQDVYLKIIDIVQSHGADFAFPSQTLYMDNITPPEQGR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"MONOMER0-921" "small toxic polypeptide LdrD" ["LdrD", "LdrD peptide of the LdrD-RdlD toxin-antitoxin system"] "MTFAELGMAFWHDLAAPVIAGILASMIVNWLNKRK" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"MOTA-FLAGELLAR-MOTOR-STATOR-PROTEIN" "motility protein A" ["FlaJ", "MotA"] "MLILLGYLVVLGTVFGGYLMTGGSLGALYQPAELVIIAGAGIGSFIVGNNGKAIKGTLKALPLLFRRSKYTKAMYMDLLALLYRLMAKSRQMGMFSLERDIENPRESEIFASYPRILADSVMLDFIVDYLRLIISGHMNTFEIEALMDEEIETHESEAEVPANSLALVGDSLPAFGIVAAVMGVVHALGSADRPAAELGALIAHAMVGTFLGILLAYGFISPLATVLRQKSAETSKMMQCVKVTLLSNLNGYAPPIAVEFGRKTLYSSERPSFIELEEHVRAVKNPQQQTTTEEA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"MOTB-FLAGELLAR-MOTOR-STATOR-PROTEIN" "motility protein B" ["FlaJ", "MotB"] "MKNQAHPIIVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILHENAESQNEPVSALEKPEVAPQVSVPTMPSAEPR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"MONOMER0-921" "small toxic polypeptide LdrD" ["LdrD", "LdrD peptide of the LdrD-RdlD toxin-antitoxin system"] "MTFAELGMAFWHDLAAPVIAGILASMIVNWLNKRK" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"MOTA-FLAGELLAR-MOTOR-STATOR-PROTEIN" "motility protein A" ["FlaJ", "MotA"] "MLILLGYLVVLGTVFGGYLMTGGSLGALYQPAELVIIAGAGIGSFIVGNNGKAIKGTLKALPLLFRRSKYTKAMYMDLLALLYRLMAKSRQMGMFSLERDIENPRESEIFASYPRILADSVMLDFIVDYLRLIISGHMNTFEIEALMDEEIETHESEAEVPANSLALVGDSLPAFGIVAAVMGVVHALGSADRPAAELGALIAHAMVGTFLGILLAYGFISPLATVLRQKSAETSKMMQCVKVTLLSNLNGYAPPIAVEFGRKTLYSSERPSFIELEEHVRAVKNPQQQTTTEEA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"MOTB-FLAGELLAR-MOTOR-STATOR-PROTEIN" "motility protein B" ["FlaJ", "MotB"] "MKNQAHPIIVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILHENAESQNEPVSALEKPEVAPQVSVPTMPSAEPR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "MTLA-MONOMER" "mannitol-specific PTS enzyme IICBA component" ["MtlC", "MtlA"] "MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLPNETLAKLVGPMITYLLPLLIGYTGGKLVGGERGGVVGAITTMGVIVGADMPMFLGSMIAGPLGGWCIKHFDRWVDGKIKSGFEMLVNNFSAGIIGMILAILAFLGIGPIVEALSKMLAAGVNFMVVHDMLPLASIFVEPAKILFLNNAINHGIFSPLGIQQSHELGKSIFFLIEANPGPGMGVLLAYMFFGRGSAKQSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILGGMTGVFTLTILGGGLVSPASPGSILAVLAMTPKGAYFANIAGVCAAMAVSFVVSAILLKTSKVKEEDDIEAATRRMQDMKAESKGASPLSAGDVTNDLSHVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLTNFLDSGLYTSLTERLVAAQRHTANEEKVKDSLKDSFDDSSANLFKLGAENIFLGRKAATKEEAIRFAGEQLVKGGYVEPEYVQAMLDREKLTPTYLGESIAVPHGTVEAKDRVLKTGVVFCQYPEGVRFGEEEDDIARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTTSVDEVLELLAGRK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"MTR-MONOMER" "tryptophan:H+ symporter Mtr" ["Mtr", "tryptophan-specific transporter"] "MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAVGRLKTALLTFAPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIALILVFGVGNALVHILSSFNLLPVYQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"MTR-MONOMER" "tryptophan:H+ symporter Mtr" ["Mtr", "tryptophan-specific transporter"] "MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAVGRLKTALLTFAPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIALILVFGVGNALVHILSSFNLLPVYQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "MYRISTOYLACYLTRAN-MONOMER" "Lipid A biosynthesis myristoyltransferase" ["WaaN", "Mlt", "LpxM", "MsbB", "myristoyl-acyl carrier protein-dependent acyltransferase"] "METKKNNSEYIPEFDKSFRHPRYWGAWLGVAAMAGIALTPPKFRDPILARLGRFAGRLGKSSRRRALINLSLCFPERSEAEREAIVDEMFATAPQAMAMMAELAIRGPEKIQPRVDWQGLEIIEEMRRNNEKVIFLVPHGWAVDIPAMLMASQGQKMAAMFHNQGNPVFDYVWNTVRRRFGGRLHARNDGIKPFIQSVRQGYWGYYLPDQDHGPEHSEFVDFFATYKATLPAIGRLMKVCRARVVPLFPIYDGKTHRLTIQVRPPMDDLLEADDHTIARRMNEEVEIFVGPRPEQYTWILKLLKTRKPGEIQPYKRKDLYPIK" [] ["CCO-CW-BAC-NEG", "CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "N-ACETYLGLUTPREDUCT-MONOMER" null ["ArgC"] "MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDISEFSPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYYGFTHQYPELLEQAAYGLAEWCGNKLKEANLIAVPGCYPTAAQLALKPLIDADLLDLNQWPVINATSGVSGAGRKAAISNSFCEVSLQPYGVFTHRHQPEIATHLGADVIFTPHLGNFPRGILETITCRLKSGVTQAQVAQVLQQAYAHKPLVRLYDKGVPALKNVVGLPFCDIGFAVQGEHLIIVATEDNLLKGAAAQAVQCANIRFGYAETQSLI" [] ["CCO-CYTOSOL"] 0 [] {} 0 "N-ACETYLTRANSFER-MONOMER" "N-acetylglutamate synthase" ["ArgA"] "MVKERKTELVEGFRHSVPYINTHRGKTFVIMLGGEAIEHENFSSIVNDIGLLHSLGIRLVVVYGARPQIDANLAAHHHEPLYHKNIRVTDAKTLELVKQAAGTLQLDITARLSMSLNNTPLQGAHINVVSGNFIIAQPLGVDDGVDYCHSGRIRRIDEDAIHRQLDSGAIVLMGPVAVSVTGESFNLTSEEIATQLAIKLKAEKMIGFCSSQGVTNDDGDIVSELFPNEAQARVEAQEEKGDYNSGTVRFLRGAVKACRSGVRRCHLISYQEDGALLQELFSRDGIGTQIVMESAEQIRRATINDIGGILELIRPLEQQGILVRRSREQLEMEIDKFTIIQRDNTTIACAALYPFPEEKIGEMACVAVHPDYRSSSRGEVLLERIAAQAKQSGLSKLFVLTTRSIHWFQERGFTPVDIDLLPESKKQLYNYQRKSKVLMADLG" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"NACGLCTRANS-MONOMER" null ["MurG"] "MSGQGKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGNPVRTDVLALPLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGWSRETLLTMAERARAASIPDATERVANEVSRVARA" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 1 [] {} 0 +"NACGLCTRANS-MONOMER" null ["MurG"] "MSGQGKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGNPVRTDVLALPLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGWSRETLLTMAERARAASIPDATERVANEVSRVARA" [] ["CCO-PM-BAC-NEG"] 1 [] {} 0 "NACMURLALAAMI1-MONOMER" "N-acetylmuramoyl-L-alanine amidase A" ["YfeE", "AmiA"] "MSTFKPLKTLTSRRQVLKAGLAALTLSGMSQAIAKDELLKTSNGHSKPKAKKSGGKRVVVLDPGHGGIDTGAIGRNGSKEKHVVLAIAKNVRSILRNHGIDARLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTNPKAAGASVFALSNRGASSAMAKYLSERENRADEVAGKKATDKDHLLQQVLFDLVQTDTIKNSLTLGSHILKKIKPVHKLHSRNTEQAAFVVLKSPSVPSVLVETSFITNPEEERLLGTAAFRQKIATAIAEGVISYFHWFDNQKAHSKKR" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 0 "NACMURLALAAMI2-MONOMER" "N-acetylmuramoyl-L-alanine amidase B" ["YjeD", "AmiB", "N-acetylmuramoyl-L-alanine amidase 2"] "MMYRIRNWLVATLLLLCTPVGAATLSDIQVSNGNQQARITLSFIGDPDYAFSHQSKRTVALDIKQTGVIQGLPLLFSGNNLVKAIRSGTPKDAQTLRLVVDLTENGKTEAVKRQNGSNYTVVFTINADVPPPPPPPPVVAKRVETPAVVAPRVSEPARNPFKTESNRTTGVISSNTVTRPAARATANTGDKIIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVSIHADAAPNRSATGASVWVLSNRRANSEMASWLEQHEKQSELLGGAGDVLANSQSDPYLSQAVLDLQFGHSQRVGYDVATSMISQLQRIGEIHKRRPEHASLGVLRSPDIPSVLVETGFISNNSEERLLASDDYQQQLAEAIYKGLRNYFLAHPMQSAPQGATAQTASTVTTPDRTLPN" [] ["CCO-PERI-BAC"] 0 [] {} 0 "NAD-SYNTH-MONOMER" "NH3-dependent NAD+ synthetase" ["Efg", "NtrL", "NadE"] "MTLQQQIIKALGAKPQINAEEEIRRSVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQADEQDCQDAIAFIQPDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGTDHAAEAITGFFTKYGDGGTDINPLYRLNKRQGKQLLAALACPEHLYKKAPTADLEDDRPSLPDEVALGVTYDNIDDYLEGKNVPQQVARTIENWYLKTEHKRRPPITVFDDFWKK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 -"NADH-DHII-MONOMER" "NADH:quinone oxidoreductase II" ["Ndh", "NDH-2", "NADH dhII", "NADH dehydrogenase II", "NQR", "NADH-quinone reductase"] "MTTPLKKIVIVGGGAGGLEMATQLGHKLGRKKKAKITLVDRNHSHLWKPLLHEVATGSLDEGVDALSYLAHARNHGFQFQLGSVIDIDREAKTITIAELRDEKGELLVPERKIAYDTLVMALGSTSNDFNTPGVKENCIFLDNPHQARRFHQEMLNLFLKYSANLGANGKVNIAIVGGGATGVELSAELHNAVKQLHSYGYKGLTNEALNVTLVEAGERILPALPPRISAAAHNELTKLGVRVLTQTMVTSADEGGLHTKDGEYIEADLMVWAAGIKAPDFLKDIGGLETNRINQLVVEPTLQTTRDPDIYAIGDCASCPRPEGGFVPPRAQAAHQMATCAMNNILAQMNGKPLKNYQYKDHGSLVSLSNFSTVGSLMGNLTRGSMMIEGRIARFVYISLYRMHQIALHGYFKTGLMMLVGSINRVIRPRLKLH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 1 [] {} 0 +"NADH-DHII-MONOMER" "NADH:quinone oxidoreductase II" ["Ndh", "NDH-2", "NADH dhII", "NADH dehydrogenase II", "NQR", "NADH-quinone reductase"] "MTTPLKKIVIVGGGAGGLEMATQLGHKLGRKKKAKITLVDRNHSHLWKPLLHEVATGSLDEGVDALSYLAHARNHGFQFQLGSVIDIDREAKTITIAELRDEKGELLVPERKIAYDTLVMALGSTSNDFNTPGVKENCIFLDNPHQARRFHQEMLNLFLKYSANLGANGKVNIAIVGGGATGVELSAELHNAVKQLHSYGYKGLTNEALNVTLVEAGERILPALPPRISAAAHNELTKLGVRVLTQTMVTSADEGGLHTKDGEYIEADLMVWAAGIKAPDFLKDIGGLETNRINQLVVEPTLQTTRDPDIYAIGDCASCPRPEGGFVPPRAQAAHQMATCAMNNILAQMNGKPLKNYQYKDHGSLVSLSNFSTVGSLMGNLTRGSMMIEGRIARFVYISLYRMHQIALHGYFKTGLMMLVGSINRVIRPRLKLH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 1 [] {} 0 "NAG1P-URIDYLTRANS-MONOMER" "fused N-acetylglucosamine-1-phosphate uridyltransferase and glucosamine-1-phosphate acetyltransferase" ["YieA", "GlmU"] "MLNNAMSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQSEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISRVPQTQKEGWRRPVKKK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "NAG6PDEACET-MONOMER" "N-acetylglucosamine-6-phosphate deacetylase" ["NagA"] "MYALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITTSDELMKQGVRVMREYLAKHPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDAALVDFLCENADVITKVTLAPEMVPAEVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLYNAMPYITGREPGLAGAILDEADIYCGIIADGLHVDYANIRNAKRLKGDKLCLVTDATAPAGANIEQFIFAGKTIYYRNGLCVDENGTLSGSSLTMIEGVRNLVEHCGIALDEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFTPDFKITKTIVNGNEVVTQ" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 -"NAGE-MONOMER" "N-acetylglucosamine-specific PTS enzyme IIABC component" ["PtsN", "PstN", "NagE"] "MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQAGGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGYFVLTKAMVTINPEINMGVLAGIITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIHAGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINRFYAGDGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAGAIDYALMYNLPAASQNVWMLLVMGVIFFAIYFVVFSLVIRMFNLKTPGREDKEDEIVTEEANSNTEEGLTQLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDTMCKRLGASGVVKLNKQTIQVIVGAKAESIGDAMKKVVARGPVAAASAEATPATAAPVAKPQAVPNAVSIAELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDDFSGLIIKAQGHIVAGQTPLYEIKK" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {"ZN+2": 1} 1 +"NAGE-MONOMER" "N-acetylglucosamine-specific PTS enzyme IIABC component" ["PtsN", "PstN", "NagE"] "MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQAGGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGYFVLTKAMVTINPEINMGVLAGIITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIHAGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINRFYAGDGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAGAIDYALMYNLPAASQNVWMLLVMGVIFFAIYFVVFSLVIRMFNLKTPGREDKEDEIVTEEANSNTEEGLTQLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDTMCKRLGASGVVKLNKQTIQVIVGAKAESIGDAMKKVVARGPVAAASAEATPATAAPVAKPQAVPNAVSIAELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDDFSGLIIKAQGHIVAGQTPLYEIKK" [] ["CCO-PM-BAC-NEG"] 0 [] {"ZN+2": 1} 1 "NANE-MONOMER" "probable N-acetylmannosamine-6-phosphate 2-epimerase" ["YhcJ", "NanE"] "MSLLAQLDQKIAANGGLIVSCQPVPDSPLDKPEIVAAMALAAEQAGAVAIRIEGVANLQATRAVVSVPIIGIVKRDLEDSPVRITAYIEDVDALAQAGADIIAIDGTDRPRPVPVETLLARIHHHGLLAMTDCSTPEDGLACQKLGAEIIGTTLSGYTTPETPEEPDLALVKTLSDAGCRVIAEGRYNTPAQAADAMRHGAWAVTVGSAITRLEHICQWYNTAMKKAVL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "NANK-MONOMER" "N-acetylmannosamine kinase" ["YhcI", "NanK"] "MTTLAIDIGGTKLAAALIGADGQIRDRRELPTPASQTPEALRDALSALVSPLQAHAQRVAIASTGIIRDGSLLALNPHNLGGLLHFPLVKTLEQLTNLPTIAINDAQAAAWAEFQALDGDITDMVFITVSTGVGGGVVSGCKLLTGPGGLAGHIGHTLADPHGPVCGCGRTGCVEAIASGRGIAAAAQGELAGADAKTIFTRAGQGDEQAQQLIHRSARTLARLIADIKATTDCQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHDAGLLGAALLAQGEKL" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 "NANT-MONOMER" "N-acetylneuraminate:H+ symporter" ["NanT", "sialic acid transporter NanT"] "MSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLTEVQGEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLAMVTSIVLFSAGTLACGFAPGYITMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHAGKAPVRTMVDILYRGEHRIANIVMTLAAATALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSAGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLAYNPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLASQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGIAGILPKLIGGYFDTDQRAAGLGFTYNVGALGGALAPIIGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPSRVQRWLRPEALRTHDAIDGKPFSGAVPFGSAKNDLVKTKS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -3843,18 +3843,18 @@ "NAPD-MONOMER" "NapA signal peptide-binding chaperone NapD" ["YojF", "NapD", "signal peptide-binding chaperone for NapA"] "MHTNWQVCSLVVQAKSERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLIQTIESVRNVEGVLAVSLVYHQQEEQGEETP" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "NAPF-MONOMER" "ferredoxin-type protein" ["YojG", "NapF"] "MKIDASRRGILTGRWRKASNGIRPPWSGDESHFLTHCTRCDACINACENNILQRGAGGYPSVNFKNNECSFCYACAQACPESLFSPRHTRAWDLQFTIGDACLAYQSVECRRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNGCGACAASCPVSAITAEYLHAH" ["CCO-CYTOSOL"] ["CCO-PERI-BAC", "CCO-CYTOSOL"] 0 [] {"CPD-7": 3} 0 "NAPG-MONOMER" "ferredoxin-type protein NapG" ["YojB", "YojA", "NapG"] "MSRSAKPQNGRRRFLRDVVRTAGGLAAVGVALGLQQQTARASGVRLRPPGAINENAFASACVRCGQCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMCEDIPCAKVCPSGALDREIESIDDARMGLAVLVDQENCLNFQGLRCDVCYRECPKIDEAITLELERNTRTGKHARFLPTVHSDACTGCGKCEKVCVLEQPAIKVLPLSLAKGELGHHYRFGWLEGNNGKS" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {"CPD-7": 4} 1 -"NAPH-MONOMER" "ferredoxin-type protein NapH" ["YejZ", "NapH"] "MANRKRDAGREALEKKGWWRSHRWLVLRRLCQFFVLGMFLSGPWFGVWILHGNYSSSLLFDTVPLTDPLMTLQSLASGHLPATVALTGAVIITVLYALAGKRLFCSWVCPLNPITDLANWLRRRFDLNQSATIPRHIRYVLLVVILVGSALTGTLIWEWINPVSLMGRSLVMGFGSGALLILALFLFDLLVVEHGWCGHICPVGALYGVLGSKGVITVAATDRQKCNRCMDCFHVCPEPHVLRAPVLDEQSPVQVTSRDCMTCGRCVDVCSEDVFTITTRWSSGAKS" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"CPD-7": 2} 1 +"NAPH-MONOMER" "ferredoxin-type protein NapH" ["YejZ", "NapH"] "MANRKRDAGREALEKKGWWRSHRWLVLRRLCQFFVLGMFLSGPWFGVWILHGNYSSSLLFDTVPLTDPLMTLQSLASGHLPATVALTGAVIITVLYALAGKRLFCSWVCPLNPITDLANWLRRRFDLNQSATIPRHIRYVLLVVILVGSALTGTLIWEWINPVSLMGRSLVMGFGSGALLILALFLFDLLVVEHGWCGHICPVGALYGVLGSKGVITVAATDRQKCNRCMDCFHVCPEPHVLRAPVLDEQSPVQVTSRDCMTCGRCVDVCSEDVFTITTRWSSGAKS" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {"CPD-7": 2} 1 "NAPHTHOATE-SYN-MONOMER" "1,4-dihydroxy-2-naphthoyl-CoA synthase" ["MenB"] "MIYPDEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "NARG-MONOMER" "nitrate reductase A subunit α" ["ChlC", "NarC", "NarG"] "MSKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWGEKGKWNLEQRDGKTGEETELQLSLLGSQDEIAEVGFPYFGGDGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSYDDVKAYTPAWAEQITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSAPQLGTNPLTIAGEAEKAGMNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQGKDLGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEVCVGHLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERDYPATYERFTSIGPLMEKIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAWAALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKEVIGQKSNGNQEKALNFLTPHQKWGIHSTYSDNLLMLTLGRGGPVVWLSEADAKDLGIADNDWIEVFNSNGALTARAVVSQRVPAGMTMMYHAQERIVNLPGSEITQQRGGIHNSVTRITPKPTHMIGGYAHLAYGFNYYGTVGSNRDEFVVVRKMKNIDWLDGEGNDQVQESVK" ["CCO-MEMBRANE"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 1 [] {"CPD-7": 1, "CPD-15873": 1} 1 "NARH-MONOMER" "nitrate reductase A subunit β" ["ChlC", "NarH"] "MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGVEYAWFNNVETKPGQGFPTDWENQEKYKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYEPFDFDYQNLHTAPEGSKSQPIARPRSLITGERMAKIEKGPNWEDDLGGEFDKLAKDKNFDNIQKAMYSQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDADAIERAASTENEKDLYQRQLDVFLDPNDPKVIEQAIKDGIPLSVIEAAQQSPVYKMAMEWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIPVQYLANLLTAGDTKPVLRALKRMLAMRHYKRAETVDGKVDTRALEEVGLTEAQAQEMYRYLAIANYEDRFVVPSSHRELAREAFPEKNGCGFTFGDGCHGSDTKFNLFNSRRIDAIDVTSKTEPHP" ["CCO-MEMBRANE"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"CPD-7": 3, "3FE-4S": 1} 1 -"NARI-MONOMER" "nitrate reductase A subunit γ" ["ChlI", "NarI"] "MQFLNMFFFDIYPYIAGAVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGILGIFVGHFFGMLTPHWMYEAWLPIEVKQKMAMFAGGASGVLCLIGGVLLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASQHLDGVAFIFRLHLVLGMTLFLLFPFSRLIHIWSVPVEYLTRKYQLVRARH" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"Heme-b": 2} 1 +"NARI-MONOMER" "nitrate reductase A subunit γ" ["ChlI", "NarI"] "MQFLNMFFFDIYPYIAGAVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGILGIFVGHFFGMLTPHWMYEAWLPIEVKQKMAMFAGGASGVLCLIGGVLLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASQHLDGVAFIFRLHLVLGMTLFLLFPFSRLIHIWSVPVEYLTRKYQLVRARH" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {"Heme-b": 2} 1 "NARJ-MONOMER" "nitrate reductase 1 molybdenum cofactor assembly chaperone" ["NarJ", "molybdenum cofactor assembly chaperone subunit (δ subunit) of nitrate reductase 1"] "MIELVIVSRLLEYPDAALWQHQQEMFEAIAASKNLPKEDAHALGIFLRDLTTMDPLDAQAQYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLLAQYEQHGLQLNSRELPDHLPLYLEYLAQLPQSEAVEGLKDIAPILALLSARLQQRESRYAVLFDLLLKLANTAIDSDKVAEKIADEARDDTPQALDAVWEEEQVKFFADKGCGDSAITAHQRRFAGAVAPQYLNITTGGQH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "NARK-MONOMER" "nitrate:nitrite antiporter NarK" ["NarK"] "MSHSSAPERATGAVITDWRPEDPAFWQQRGQRIASRNLWISVPCLLLAFCVWMLFSAVAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPIFGGRRWTAFSTGILIIPCVWLGFAVQDTSTPYSVFIIISLLCGFAGANFASSMANISFFFPKQKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAVFGSQGVKQPDGTELYLANASWIWVPFLAIFTIAAWFGMNDLATSKASIKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAGFAMLSKTQFPDVQILQYAFFGPFIGALARSAGGALSDRLGGTRVTLVNFILMAIFSGLLFLTLPTDGQGGSFMAFFAVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKAEGGSDERAMREAATDTAAALGFISAIGAIGGFFIPKAFGSSLALTGSPVGAMKVFLIFYIACVVITWAVYGRHSKK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "NARL-MONOMER" "DNA-binding transcriptional dual regulator NarL" ["NarR", "NarL", "nitrate/nitrite response regulator NarL", "FrdR"] "MSNQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "NARP-MONOMER" "DNA-binding transcriptional dual regulator NarP" ["NarP", "nitrate/nitrite response regulator NarP"] "MPEATPFQVMIVDDHPLMRRGVRQLLELDPGSEVVAEAGDGASAIDLANRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATILFLQQRGAQ" [] ["CCO-CYTOSOL"] 0 [] {} 0 "NARQ-MONOMER" "sensor histidine kinase NarQ" ["nitrate/nitrite sensor kinase", "NarQ"] "MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQLM" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "NARU-MONOMER" "nitrate/nitrite transporter NarU" ["YddF", "NarU", "NarU MFS nitrate/nitrite antiporter"] "MALQNEKNSRYLLRDWKPENPAFWENKGKHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAHKEAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGRRKFSQK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"NARV-MONOMER" "nitrate reductase Z subunit γ" ["ChlZ", "NarV"] "MIQYLNVFFYDIYPYICATVFFLGSWLRYDYGQYTWRASSSQMLDKRGMVIWSNLFHIGILGIFFGHLFGMLTPHWMYAWFLPVAAKQLMAMVLGGICGVLTLIGGAGLLWRRLTNQRVRATSTTPDIIIMSILLIQCLLGLSTIPFSAQYPDGSEMMKLVGWAQSIVTFRGGSSEMLNGVAFVFRLHLVLGMTIFLLFPFTRLVHVWSAPFEYFTRRYQIVRSRR" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"Heme-b": 2} 1 +"NARV-MONOMER" "nitrate reductase Z subunit γ" ["ChlZ", "NarV"] "MIQYLNVFFYDIYPYICATVFFLGSWLRYDYGQYTWRASSSQMLDKRGMVIWSNLFHIGILGIFFGHLFGMLTPHWMYAWFLPVAAKQLMAMVLGGICGVLTLIGGAGLLWRRLTNQRVRATSTTPDIIIMSILLIQCLLGLSTIPFSAQYPDGSEMMKLVGWAQSIVTFRGGSSEMLNGVAFVFRLHLVLGMTIFLLFPFTRLVHVWSAPFEYFTRRYQIVRSRR" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {"Heme-b": 2} 1 "NARW-MONOMER" "NarW, putative private chaperone for NarZ nitrate reductase subunit" ["ChlZ", "NarW"] "MQILKVIGLLMEYPDELLWECKEDALALIRRDAPMLTDFTHNLLNAPLLDKQAEWCEVFDRGRTTSLLLFEHVHAESRDRGQAMVDLLAEYEKVGLQLDCRELPDYLPLYLEYLSVLPDDQAKEGLLNVAPILALLGGRLKQREAPWYALFDALLQLAGSSLSSDSVTKQVNSEERDDTRQALDAVWEEEQVKFIEDNATACDSSPLNQYQRRFSQDVAPQYVDISAGGGK" [] ["CCO-CYTOSOL"] 0 [] {} 0 "NARX-MONOMER" "sensor histidine kinase NarX" ["NarR", "FrdR", "NarX"] "MLKRCLSPLTLVNQVALIVLLSTAIGLAGMAVSGWLVQGVQGSAHAINKAGSLRMQSYRLLAAVPLSEKDKPLIKEMEQTAFSAELTRAAERDGQLAQLQGLQDYWRNELIPALMRAQNRETVSADVSQFVAGLDQLVSGFDRTTEMRIETVVLVHRVMAVFMALLLVFTIIWLRARLLQPWRQLLAMASAVSHRDFTQRANISGRNEMAMLGTALNNMSAELAESYAVLEQRVQEKTAGLEHKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQNLTLLRDIELRVYDTDDEENHQEFTCQPDMTCDDKGCQLCPRGVLPVGDRGTTLKWRLADSHTQYGILLATLPQGRHLSHDQQQLVDTLVEQLTATLALDRHQERQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWAQLRELLTTFRLQLTEPGLRPALEASCEEYSAKFGFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHSQASEVVVTVAQNDNQVKLTVQDNGCGVPENAIRSNHYGMIIMRDRAQSLRGDCRVRRRESGGTEVVVTFIPEKTFTDVQGDTHE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PERI-BAC", "CCO-PM-BAC-NEG"] 0 [] {} 1 "NARY-MONOMER" "nitrate reductase Z subunit β" ["ChlZ", "NarY"] "MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTGREGMEYAWFNNVETKPGIGYPKNWEDQEEWQGGWVRDVNGKIRPRLGNKMGVITKIFANPVVPQIDDYYEPFTFDYEHLHSAPEGKHIPTARPRSLIDGKRMDKVIWGPNWEELLGGEFEKRARDRNFEAMQKEMYGQFENTFMMYLPRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFNWKSGKSEKCIFCYPRIESGQPTVCSETCVGRIRYLGVLLYDADRIEEAASTEREVDLYERQCEVFLDPHDPSVIEEALKQGIPQNVIDAAQRSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLSPIQSYADAGGLPKSEGVLPAIESLRIPVQYLANMLSAGDTGPVLRALKRMMAMRHYMRSQTVEGVTDTRAIDEVGLSVAQVEEMYRYLAIANYEDRFVIPTSHREMAGDAFAERNGCGFTFGDGCHGSDSKFNLFNSSRIDAINITEVRDKAEGE" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {"CPD-7": 3, "3FE-4S": 1} 1 @@ -3864,11 +3864,11 @@ "NICONUCADENYLYLTRAN-MONOMER" "nicotinate-nucleotide adenylyltransferase" ["FusB", "YbeN", "NadD"] "MKSLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQPEANSVQRKHMLELAIADKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYEYETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNPEDLHLQPAGKIYLAETPWFNISATIIRERLQNGESCEDLLPEPVLTYINQQGLYR" [] ["CCO-CYTOSOL"] 0 [] {} 0 "NICOTINAMID-MONOMER" "nicotinamidase" ["Nam", "YdjB", "PncA"] "MPPRALLLVDLQNDFCAGGALAVPEGDSTVDVANRLIDWCQSRGEAVIASQDWHPANHGSFASQHGVEPYTPGQLDGLPQTFWPDHCVQNSEGAQLHPLLHQKAIAAVFHKGENPLVDSYSAFFDNGRRQKTSLDDWLRDHEIDELIVMGLATDYCVKFTVLDALQLGYKVNVITDGCRGVNIQPQDSAHAFMEMSAAGATLYTLADWEETQG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 "NICOTINATEPRIBOSYLTRANS-MONOMER" null ["PncB"] "MTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVHVAAEFRCRGDDLLGIYADAIREQVQAMQHLRLQDDEYQWLSALPFFKADYLNWLREFRFNPEQVTVSNDNGKLDIRLSGPWREVILWEVPLLAVISEMVHRYRSPQADVAQALDTLESKLVDFSALTAGLDMSRFHLMDFGTRRRFSREVQETIVKRLQQESWFVGTSNYDLARRLSLTPMGTQAHEWFQAHQQISPDLANSQRAALAAWLEEYPDQLGIALTDCITMDAFLRDFGVEFASRYQGLRHDSGDPVEWGEKAIAHYEKLGIDPQSKTLVFSDNLDLRKAVELYRHFSSRVQLSFGIGTRLTCDIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFDLPHIKKAS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 -"NIKA-MONOMER" "nickel ABC transporter periplasmic binding protein" ["NikA", "HydD", "HydC"] "MLSTLRRTLFALLACASFIVHAAAPDEITTAWPVNVGPLNPHLYTPNQMFAQSMVYEPLVKYQADGSVIPWLAKSWTHSEDGKTWTFTLRDDVKFSNGEPFDAEAAAENFRAVLDNRQRHAWLELANQIVDVKALSKTELQITLKSAYYPFLQELALPRPFRFIAPSQFKNHETMNGIKAPIGTGPWILQESKLNQYDVFVRNENYWGEKPAIKKITFNVIPDPTTRAVAFETGDIDLLYGNEGLLPLDTFARFSQNPAYHTQLSQPIETVMLALNTAKAPTNELAVREALNYAVNKKSLIDNALYGTQQVADTLFAPSVPYANLGLKPSQYDPQKAKALLEKAGWTLPAGKDIREKNGQPLRIELSFIGTDALSKSMAEIIQADMRQIGADVSLIGEEESSIYARQRDGRFGMIFHRTWGAPYDPHAFLSSMRVPSHADFQAQQGLADKPLIDKEIGEVLATHDETQRQALYRDILTRLHDEAVYLPISYISMMVVSKPELGNIPYAPIATEIPFEQIKPVKP" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 -"NIKB-MONOMER" "nickel ABC transporter membrane subunit NikB" ["NikB", "HydC", "HydD"] "MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLNDKQTERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRHEGAHA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"NIKC-MONOMER" "nickel ABC transporter membrane subunit NikC" ["NikC", "HydC", "HydD"] "MNFFLSSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLGRDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGRVDQATMRVADMFMTFPTSILSFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLASRLSGAGHVRVFVDHLAGAVIPSLLVLATLDIGHMMLHVAGMSFLGLGVTAPTAEWGVMINDARQYIWTQPLQMFWPGLALFISVMAFNLVGDALRDHLDPHLVTEHAH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"NIKD-MONOMER" "nickel ABC transporter ATP binding subunit NikD" ["NikD", "HydC", "HydD"] "MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESPFIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSLVSAHLALYGMELAS" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"NIKE-MONOMER" "nickel ABC transporter ATP binding subunit NikE" ["NikE", "HydC", "HydD"] "MTLLNISGLSHHYAHGGFNGKHQHQAVLNNVSLTLKSGETVALLGRSGCGKSTLARLLVGLESPAQGNISWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREILREPMRHLLSLKKSEQLARASEMLKAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQVVGEKLTFSSDAGRVLQNAVLPAFPVRRRTTEKV" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 1 +"NIKA-MONOMER" "Ni(2+) ABC transporter periplasmic binding protein" ["NikA", "HydD", "HydC", "nickel ABC transporter periplasmic binding protein"] "MLSTLRRTLFALLACASFIVHAAAPDEITTAWPVNVGPLNPHLYTPNQMFAQSMVYEPLVKYQADGSVIPWLAKSWTHSEDGKTWTFTLRDDVKFSNGEPFDAEAAAENFRAVLDNRQRHAWLELANQIVDVKALSKTELQITLKSAYYPFLQELALPRPFRFIAPSQFKNHETMNGIKAPIGTGPWILQESKLNQYDVFVRNENYWGEKPAIKKITFNVIPDPTTRAVAFETGDIDLLYGNEGLLPLDTFARFSQNPAYHTQLSQPIETVMLALNTAKAPTNELAVREALNYAVNKKSLIDNALYGTQQVADTLFAPSVPYANLGLKPSQYDPQKAKALLEKAGWTLPAGKDIREKNGQPLRIELSFIGTDALSKSMAEIIQADMRQIGADVSLIGEEESSIYARQRDGRFGMIFHRTWGAPYDPHAFLSSMRVPSHADFQAQQGLADKPLIDKEIGEVLATHDETQRQALYRDILTRLHDEAVYLPISYISMMVVSKPELGNIPYAPIATEIPFEQIKPVKP" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 +"NIKB-MONOMER" "Ni(2+) ABC transporter membrane subunit NikB" ["NikB", "HydC", "HydD", "nickel ABC transporter membrane subunit NikB"] "MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLNDKQTERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRHEGAHA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"NIKC-MONOMER" "Ni(2+) ABC transporter membrane subunit NikC" ["NikC", "HydC", "HydD", "nickel ABC transporter membrane subunit NikC"] "MNFFLSSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLGRDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGRVDQATMRVADMFMTFPTSILSFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLASRLSGAGHVRVFVDHLAGAVIPSLLVLATLDIGHMMLHVAGMSFLGLGVTAPTAEWGVMINDARQYIWTQPLQMFWPGLALFISVMAFNLVGDALRDHLDPHLVTEHAH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"NIKD-MONOMER" "Ni(2+) ABC transporter ATP binding subunit NikD" ["NikD", "HydC", "HydD", "nickel ABC transporter ATP binding subunit NikD"] "MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESPFIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSLVSAHLALYGMELAS" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"NIKE-MONOMER" "Ni(2+) ABC transporter ATP binding subunit NikE" ["NikE", "HydC", "HydD", "nickel ABC transporter ATP binding subunit NikE"] "MTLLNISGLSHHYAHGGFNGKHQHQAVLNNVSLTLKSGETVALLGRSGCGKSTLARLLVGLESPAQGNISWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREILREPMRHLLSLKKSEQLARASEMLKAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQVVGEKLTFSSDAGRVLQNAVLPAFPVRRRTTEKV" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 "NIRB-MONOMER" "nitrite reductase (NADH) large subunit" ["NirB", "nitrite reductase catalytic subunit NirB"] "MSKVRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSDTQDCFVYRTIEDLNAIESCARRSKRGAVVGGGLLGLEAAGALKNLGIETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPRDKLATQCGLDVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHILGSENAFEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIELPENPDSLILPAHSGSGKPSIGVDKLPDSAQICSCFDVTKGDLIAAINKGCHTVAALKAETKAGTGCGGCIPLVTQVLNAELAKQGIEVNNNLCEHFAYSRQELFHLIRVEGIKTFEELLAKHGKGYGCEVCKPTVGSLLASCWNEYILKPEHTPLQDSNDNFLANIQKDGTYSVIPRSPGGEITPEGLMAVGRIAREFNLYTKITGSQRLAMFGAQKDDLPEIWRQLIEAGFETGHAYAKALRMAKTCVGSTWCRYGVGDSVGLGVELENRYKGIRTPHKMKFGVSGCTRECSEAQGKDVGIIATEKGWNLYVCGNGGMKPRHADLLAADIDRETLIKYLDRFMMFYIRTADKLTRTAPWLENLEGGIDYLKAVIIDDKLGLNAHLEEEMARLREAVLCEWTETVNTPSAQTRFKHFINSDKRDPNVQMVPEREQHRPATPYERIPVTLVEDNA" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1, "SIROHEME": 1} 1 "NIRC-MONOMER" null ["NirC", "NirC nitrite FNT transporter"] "MFTDTINKCAANAARIARLSANNPLGFWVSSAMAGAYVGLGIILIFTLGNLLDPSVRPLVMGATFGIALTLVIIAGSELFTGHTMFLTFGVKAGSISHGQMWAILPQTWLGNLVGSVFVAMLYSWGGGSLLPVDTSIVHSVALAKTTAPAMVLFFKGALCNWLVCLAIWMALRTEGAAKFIAIWWCLLAFIASGYEHSIANMTLFALSWFGNHSEAYTLAGIGHNLLWVTLGNTLSGAVFMGLGYWYATPKANRPVADKFNQTETAAG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "NIRD-MONOMER" "nitrite reductase (NADH) small subunit" ["NirD", "nitrite reductase subunit NirD"] "MSQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVKDGVVQLRG" [] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -3877,23 +3877,23 @@ "NRDE-MONOMER" "ribonucleoside-diphosphate reductase 2 subunit α" ["NrdE"] "MATTTAECLTQETMDYHALNAMLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQQRLNWLVNEGYYDESVLNRYSRDFVITLFTHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGDETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPIAGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQMALEGTEIEGCVSCAL" [] [] 1 [] {} 1 "NRDF-MONOMER" "ribonucleoside-diphosphate reductase 2 subunit β" ["YgaD", "NrdF"] "MKLSRISAINWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSEENAPLQRKAQIIQQHYRGDDPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPWADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAALSPNADENHDFFSGSGSSYVMGKAVETEDEDWNF" [] ["CCO-CYTOSOL"] 0 [] {"FE+2": 2} 1 "NRFC-MONOMER" "putative menaquinol-cytochrome c reductase 4Fe-4S subunit" ["YjcJ", "NrfC"] "MTWSRRQFLTGVGVLAAVSGTAGRVVAKTLNINGVRYGMVHDESLCIGCTACMDACREVNKVPEGVSRLTIIRSEPQGEFPDVKYRFFRKSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTKTADKCDFCRKTNLQAGKLPACVEACPTKALTFGNLDDPNSEISQLLRQKPTYRYKLALGTKPKLYRVPFKYGEVSQ" [] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {"CPD-7": 4} 1 -"NRFD-MONOMER" "putative menaquinol-cytochrome c reductase subunit NrfD" ["YjcK", "NrfD"] "MTQTSAFHFESLVWDWPIAIYLFLIGISAGLVTLAVLLRRFYPQAGGADSTLLRTTLIVGPGAVILGLLILVFHLTRPWTFWKLMFHYSFTSVMSMGVMLFQLYMVVLVLWLAKIFEHDLLALQQRWLPKLGIVQKVLSLLTPVHRGLETLMLVLAVLLGAYTGFLLSALKSYPFLNNPILPVLFLFSGISSGAAVALIAMAIRQRSNPHSTEAQFVHRMEIPVVWGEIFLLVAFFVGLALGDDGKVRALVAALGGGFWTWWFWLGVAGLGLIVPMLLKPWVNRSSGIPAVLAACGASLVGVLMLRFFILYAGQLTVA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"NRFD-MONOMER" "putative menaquinol-cytochrome c reductase subunit NrfD" ["YjcK", "NrfD"] "MTQTSAFHFESLVWDWPIAIYLFLIGISAGLVTLAVLLRRFYPQAGGADSTLLRTTLIVGPGAVILGLLILVFHLTRPWTFWKLMFHYSFTSVMSMGVMLFQLYMVVLVLWLAKIFEHDLLALQQRWLPKLGIVQKVLSLLTPVHRGLETLMLVLAVLLGAYTGFLLSALKSYPFLNNPILPVLFLFSGISSGAAVALIAMAIRQRSNPHSTEAQFVHRMEIPVVWGEIFLLVAFFVGLALGDDGKVRALVAALGGGFWTWWFWLGVAGLGLIVPMLLKPWVNRSSGIPAVLAACGASLVGVLMLRFFILYAGQLTVA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "NUCLEOSIDE-DIP-KIN-MONOMER" "nucleoside diphosphate kinase" ["Ndk"] "MAIERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSVESAAREIAYFFGEGEVCPRTR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 -"NUOA-MONOMER" "NADH:quinone oxidoreductase subunit A" ["NuoA", "NADH:ubiquinone oxidoreductase, membrane subunit A"] "MSMSTSTEVIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARARSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGWVGFVEAAIFIFVLLAGLVYLVRIGALDWTPARSRRERMNPETNSIANRQR" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"NUOB-MONOMER" "NADH:quinone oxidoreductase subunit B" ["NuoB", "NADH:ubiquinone oxidoreductase, chain B"] "MDYTLTRIDPNGENDRYPLQKQEIVTDPLEQEVNKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERRPLSWVVGDQGVYRANMQSERERKRGERIAVTNLRTPDEI" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"CPD-7": 1} 1 -"NUOC-MONOMER" "NADH:quinone oxidoreductase subunit CD" ["NuoD", "NuoCD", "NuoC", "NADH:ubiquinone oxidoreductase, chain CD"] "MTDLTAQEPAWQTRDHLDDPVIGELRNRFGPDAFTVQATRTGVPVVWIKREQLLEVGDFLKKLPKPYVMLFDLHGMDERLRTHREGLPAADFSVFYHLISIDRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPARATEFSPFELTKAKQDLEMEALTFKPEEWGMKRGTENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 1 [] {} 1 +"NUOA-MONOMER" "NADH:quinone oxidoreductase subunit A" ["NuoA", "NADH:ubiquinone oxidoreductase, membrane subunit A"] "MSMSTSTEVIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARARSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGWVGFVEAAIFIFVLLAGLVYLVRIGALDWTPARSRRERMNPETNSIANRQR" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"NUOB-MONOMER" "NADH:quinone oxidoreductase subunit B" ["NuoB", "NADH:ubiquinone oxidoreductase, chain B"] "MDYTLTRIDPNGENDRYPLQKQEIVTDPLEQEVNKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERRPLSWVVGDQGVYRANMQSERERKRGERIAVTNLRTPDEI" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {"CPD-7": 1} 1 +"NUOC-MONOMER" "NADH:quinone oxidoreductase subunit CD" ["NuoD", "NuoCD", "NuoC", "NADH:ubiquinone oxidoreductase, chain CD"] "MTDLTAQEPAWQTRDHLDDPVIGELRNRFGPDAFTVQATRTGVPVVWIKREQLLEVGDFLKKLPKPYVMLFDLHGMDERLRTHREGLPAADFSVFYHLISIDRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPARATEFSPFELTKAKQDLEMEALTFKPEEWGMKRGTENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 1 [] {} 1 "NUOE-MONOMER" "NADH:quinone oxidoreductase subunit E" ["NuoE", "NADH:ubiquinone oxidoreductase, chain E"] "MHENQQPQTEAFELSAAEREAIEHEMHHYEDPRAASIEALKIVQKQRGWVPDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] [] 0 [] {"CPD-6": 1} 1 "NUOF-MONOMER" "NADH:quinone oxidoreductase subunit F" ["NuoF", "NADH:ubiquinone oxidoreductase, chain F"] "MKNIIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQPFSNTHLINGIQPNLLKERW" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] [] 0 [] {"CPD-7": 1} 1 "NUOG-MONOMER" "NADH:quinone oxidoreductase subunit G" ["NuoG", "NADH:ubiquinone oxidoreductase, chain G"] "MATIHVDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNAEDTRGRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYADGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEICPTGVFTDKTHSERYNRKWDMQFAPSICQQCSIGCNISPGERYGELRRIENRYNGTVNHYFLCDRGRFGYGYVNLKDRPRQPVQRRGDDFITLNAEQAMQGAADILRQSKKVIGIGSPRASVESNFALRELVGEENFYTGIAHGEQERLQLALKVLREGGIYTPALREIESYDAVLVLGEDVTQTGARVALAVRQAVKGKAREMAAAQKVADWQIAAILNIGQRAKHPLFVTNVDDTRLDDIAAWTYRAPVEDQARLGFAIAHALDNSAPAVDGIEPELQSKIDVIVQALAGAKKPLIISGTNAGSLEVIQAAANVAKALKGRGADVGITMIARSVNSMGLGIMGGGSLEEALTELETGRADAVVVLENDLHRHASAIRVNAALAKAPLVMVVDHQRTAIMENAHLVLSAASFAESDGTVINNEGRAQRFFQVYDPAYYDSKTVMLESWRWLHSLHSTLLSREVDWTQLDHVIDAVVAKIPELAGIKDAAPDATFRIRGQKLAREPHRYSGRTAMRANISVHEPRQPQDIDTMFTFSMEGNNQPTAHRSQVPFAWAPGWNSPQAWNKFQDEVGGKLRFGDPGVRLFETSENGLDYFTSVPARFQPQDGKWRIAPYYHLFGSDELSQRAPVFQSRMPQPYIKLNPADAAKLGVNAGTRVSFSYDGNTVTLPVEIAEGLTAGQVGLPMGMSGIAPVLAGAHLEDLKEAQQ" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 1 [] {"CPD-6": 1, "CPD-7": 3} 1 "NUOH-MONOMER" "NADH:quinone oxidoreductase subunit H" ["NuoH", "NADH:ubiquinone oxidoreductase, membrane subunit H"] "MSWISPELIEILLTILKAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVAQAGSFNMTDIVNSQAHVWNVIPQFFGFITFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGIVTISALMVTLFFGGWQGPLLPPFIWFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKICLPLTLINLLVTAAVILWQAQ" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "NUOI-MONOMER" "NADH:quinone oxidoreductase subunit I" ["NuoI", "NADH:ubiquinone oxidoreductase, chain I"] "MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEYKRQDLVYEKEDLLISGPGKYPEYNFYRMAGMAIDGKDKGEAENEAKPIDVKSLLP" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"CPD-7": 2} 1 -"NUOJ-MONOMER" "NADH:quinone oxidoreductase subunit J" ["NuoJ", "NADH:ubiquinone oxidoreductase, membrane subunit J"] "MEFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQGIDGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREERAGEVLSNRKDDSAKRKTEEHA" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"NUOK-MONOMER" "NADH:quinone oxidoreductase subunit K" ["NuoK", "NADH:ubiquinone oxidoreductase, membrane subunit K"] "MIPLQHGLILAAILFVLGLTGLVIRRNLLFMLIGLEIMINASALAFVVAGSYWGQTDGQVMYILAISLAAAEASIGLALLLQLHRRRQNLNIDSVSEMRG" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"NUOL-MONOMER" "NADH:quinone oxidoreductase subunit L" ["NuoL", "NADH:ubiquinone oxidoreductase, membrane subunit L"] "MNMLALTIILPLIGFVLLAFSRGRWSENVSAIVGVGSVGLAALVTAFIGVDFFANGEQTYSQPLWTWMSVGDFNIGFNLVLDGLSLTMLSVVTGVGFLIHMYASWYMRGEEGYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTDPKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVELAPAHFADGNNMLMWATLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYLCFLVGGAALSALPLVTAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKEQIHAHAVKGVTHSLPLIVLLILSTFVGALIVPPLQGVLPQTTELAHGSMLTLEITSGVVAVVGILLAAWLWLGKRTLVTSIANSAPGRLLGTWWYNAWGFDWLYDKVFVKPFLGIAWLLKRDPLNSMMNIPAVLSRFAGKGLLLSENGYLRWYVASMSIGAVVVLALLMVLR" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"NUOM-MONOMER" "NADH:quinone oxidoreductase subunit M" ["NuoA", "NuoM", "NADH:ubiquinone oxidoreductase, membrane subunit M"] "MLLPWLILIPFIGGFLCWQTERFGVKVPRWIALITMGLTLALSLQLWLQGGYSLTQSAGIPQWQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLRELFMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQWFVNSVTTTRP" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"NUON-MONOMER" "NADH:quinone oxidoreductase subunit N" ["NuoN", "NADH:ubiquinone oxidoreductase, membrane subunit N"] "MTITPQNLIALLPLLIVGLTVVVVMLSIAWRRNHFLNATLSVIGLNAALVSLWFVGQAGAMDVTPLMRVDGFAMLYTGLVLLASLATCTFAYPWLEGYNDNKDEFYLLVLIAALGGILLANANHLASLFLGIELISLPLFGLVGYAFRQKRSLEASIKYTILSAAASSFLLFGMALVYAQSGDLSFVALGKNLGDGMLNEPLLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVSTFLATASKIAIFGVVMRLFLYAPVGDSEAIRVVLAIIAFASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQTGEMSMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGKFYVLAVGVQAHLWWLVGAVVVGSAIGLYYYLRVAVSLYLHAPEQPGRDAPSNWQYSAGGIVVLISALLVLVLGVWPQPLISIVRLAMPLM" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"NUOJ-MONOMER" "NADH:quinone oxidoreductase subunit J" ["NuoJ", "NADH:ubiquinone oxidoreductase, membrane subunit J"] "MEFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQGIDGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREERAGEVLSNRKDDSAKRKTEEHA" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"NUOK-MONOMER" "NADH:quinone oxidoreductase subunit K" ["NuoK", "NADH:ubiquinone oxidoreductase, membrane subunit K"] "MIPLQHGLILAAILFVLGLTGLVIRRNLLFMLIGLEIMINASALAFVVAGSYWGQTDGQVMYILAISLAAAEASIGLALLLQLHRRRQNLNIDSVSEMRG" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"NUOL-MONOMER" "NADH:quinone oxidoreductase subunit L" ["NuoL", "NADH:ubiquinone oxidoreductase, membrane subunit L"] "MNMLALTIILPLIGFVLLAFSRGRWSENVSAIVGVGSVGLAALVTAFIGVDFFANGEQTYSQPLWTWMSVGDFNIGFNLVLDGLSLTMLSVVTGVGFLIHMYASWYMRGEEGYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTDPKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVELAPAHFADGNNMLMWATLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYLCFLVGGAALSALPLVTAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKEQIHAHAVKGVTHSLPLIVLLILSTFVGALIVPPLQGVLPQTTELAHGSMLTLEITSGVVAVVGILLAAWLWLGKRTLVTSIANSAPGRLLGTWWYNAWGFDWLYDKVFVKPFLGIAWLLKRDPLNSMMNIPAVLSRFAGKGLLLSENGYLRWYVASMSIGAVVVLALLMVLR" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"NUOM-MONOMER" "NADH:quinone oxidoreductase subunit M" ["NuoA", "NuoM", "NADH:ubiquinone oxidoreductase, membrane subunit M"] "MLLPWLILIPFIGGFLCWQTERFGVKVPRWIALITMGLTLALSLQLWLQGGYSLTQSAGIPQWQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLRELFMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQWFVNSVTTTRP" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"NUON-MONOMER" "NADH:quinone oxidoreductase subunit N" ["NuoN", "NADH:ubiquinone oxidoreductase, membrane subunit N"] "MTITPQNLIALLPLLIVGLTVVVVMLSIAWRRNHFLNATLSVIGLNAALVSLWFVGQAGAMDVTPLMRVDGFAMLYTGLVLLASLATCTFAYPWLEGYNDNKDEFYLLVLIAALGGILLANANHLASLFLGIELISLPLFGLVGYAFRQKRSLEASIKYTILSAAASSFLLFGMALVYAQSGDLSFVALGKNLGDGMLNEPLLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVSTFLATASKIAIFGVVMRLFLYAPVGDSEAIRVVLAIIAFASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQTGEMSMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGKFYVLAVGVQAHLWWLVGAVVVGSAIGLYYYLRVAVSLYLHAPEQPGRDAPSNWQYSAGGIVVLISALLVLVLGVWPQPLISIVRLAMPLM" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "NUPC-MONOMER" "nucleoside:H+ symporter NupC" ["Cru", "NupC", "NupC nucleoside NUP transporter"] "MDRVLHFVLALAVVAILALLVSSDRKKIRIRYVIQLLVIEVLLAWFFLNSDVGLGFVKGFSEMFEKLLGFANEGTNFVFGSMNDQGLAFFFLKVLCPIVFISALIGILQHIRVLPVIIRAIGFLLSKVNGMGKLESFNAVSSLILGQSENFIAYKDILGKISRNRMYTMAATAMSTVSMSIVGAYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVDASEENIQMSNLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALIAALNALFATVTGWFGYSISFQGILGYIFYPIAWVMGVPSSEALQVGSIMATKLVSNEFVAMMDLQKIASTLSPRAEGIISVFLVSFANFSSIGIIAGAVKGLNEEQGNVVSRFGLKLVYGSTLVSVLSASIAALVL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"NUPG-MONOMER" "nucleoside:H+ symporter NupG" ["Gru", "NupG"] "MNLKLQLKILSFLQFCLWGSWLTTLGSYMFVTLKFDGASIGAVYSSLGIAAVFMPALLGIVADKWLSAKWVYAICHTIGAITLFMAAQVTTPEAMFLVILINSFAYMPTLGLINTISYYRLQNAGMDIVTDFPPIRIWGTIGFIMAMWVVSLSGFELSHMQLYIGAALSAILVLFTLTLPHIPVAKQQANQSWTTLLGLDAFALFKNKRMAIFFIFSMLLGAELQITNMFGNTFLHSFDKDPMFASSFIVQHASIIMSISQISETLFILTIPFFLSRYGIKNVMMISIVAWILRFALFAYGDPTPFGTVLLVLSMIVYGCAFDFFNISGSVFVEKEVSPAIRASAQGMFLMMTNGFGCILGGIVSGKVVEMYTQNGITDWQTVWLIFAGYSVVLAFAFMAMFKYKHVRVPTGTQTVSH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"NUPG-MONOMER" "nucleoside:H+ symporter NupG" ["Gru", "NupG"] "MNLKLQLKILSFLQFCLWGSWLTTLGSYMFVTLKFDGASIGAVYSSLGIAAVFMPALLGIVADKWLSAKWVYAICHTIGAITLFMAAQVTTPEAMFLVILINSFAYMPTLGLINTISYYRLQNAGMDIVTDFPPIRIWGTIGFIMAMWVVSLSGFELSHMQLYIGAALSAILVLFTLTLPHIPVAKQQANQSWTTLLGLDAFALFKNKRMAIFFIFSMLLGAELQITNMFGNTFLHSFDKDPMFASSFIVQHASIIMSISQISETLFILTIPFFLSRYGIKNVMMISIVAWILRFALFAYGDPTPFGTVLLVLSMIVYGCAFDFFNISGSVFVEKEVSPAIRASAQGMFLMMTNGFGCILGGIVSGKVVEMYTQNGITDWQTVWLIFAGYSVVLAFAFMAMFKYKHVRVPTGTQTVSH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "O-SUCCHOMOSERLYASE-MONOMER" "O-succinylhomoserine(thiol)-lyase / O-succinylhomoserine lyase" ["MetB"] "MTRKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAANKG" [] ["CCO-CYTOSOL"] 0 [] {} 1 "O-SUCCINYLBENZOATE-COA-LIG-MONOMER" "o-succinylbenzoate—CoA ligase" ["MenE"] "MIFSDWPWRHWRQVRGETIALRLNDEQLNWRELCARVDELASGFAVQGVVEGSGVMLRAWNTPQTLLAWLALLQCGARVLPVNPQLPQPLLEELLPNLTLQFALVPDGENTFPALTSLHIQLVEGAHAATWQPTRLCSMTLTSGSTGLPKAAVHTYQAHLASAQGVLSLIPFGDHDDWLLSLPLFHVSGQGIMWRWLYAGARMTVRDKQPLEQMLAGCTHASLVPTQLWRLLVNRSSVSLKAVLLGGAAIPVELTEQAREQGIRCFCGYGLTEFASTVCAKEADGLADVGSPLPGREVKIVNNEVWLRAASMAEGYWRNGQLVSLVNDEGWYATRDRGEMHNGKLTIVGRLDNLFFSGGEGIQPEEVERVIAAHPAVLQVFIVPVADKEFGHRPVAVMEYDHESVDLSEWVKDKLARFQQPVRWLTLPPELKNGGIKISRQALKEWVQRQQ" [] ["CCO-CYTOSOL"] 0 [] {} 1 "O-SUCCINYLBENZOATE-COA-SYN-MONOMER" null ["MenC"] "MRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLREGEREGWGEISPLPGFSQETWEEAQSVLLAWVNNWLAGDCELPQMPSVAFGVSCALAELTDTLPQAANYRAAPLCNGDPDDLILKLADMPGEKVAKVKVGLYEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQFAKYVNPDYRDRIAFLEEPCKTRDDSRAFARETGIAIAWDESLREPDFAFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSIESSLGLTQLARIAAWLTPDTIPGLDTLDLMQAQQVRRWPGSTLPVVEVDALERLL" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 @@ -3904,12 +3904,12 @@ "OPPA-MONOMER" "oligopeptide ABC transporter periplasmic binding protein" ["OppA"] "MTNITKRSLVAAGVLAALMAGNVALAADVPAGVTLAEKQTLVRNNGSEVQSLDPHKIEGVPESNISRDLFEGLLVSDLDGHPAPGVAESWDNKDAKVWTFHLRKDAKWSDGTPVTAQDFVYSWQRSVDPNTASPYASYLQYGHIAGIDEILEGKKPITDLGVKAIDDHTLEVTLSEPVPYFYKLLVHPSTSPVPKAAIEKFGEKWTQPGNIVTNGAYTLKDWVVNERIVLERSPTYWNNAKTVINQVTYLPIASEVTDVNRYRSGEIDMTNNSMPIELFQKLKKEIPDEVHVDPYLCTYYYEINNQKPPFNDVRVRTALKLGMDRDIIVNKVKAQGNMPAYGYTPPYTDGAKLTQPEWFGWSQEKRNEEAKKLLAEAGYTADKPLTINLLYNTSDLHKKLAIAASSLWKKNIGVNVKLVNQEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSNSSMNTAHYKSPAFDSIMAETLKVTDEAQRTALYTKAEQQLDKDSAIVPVYYYVNARLVKPWVGGYTGKDPLDNTYTRNMYIVKH" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "OPPB-MONOMER" "murein tripeptide ABC transporter / oligopeptide ABC transporter inner membrane subunit OppB" ["OppB"] "MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFKYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHWLPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "OPPC-MONOMER" "murein tripeptide ABC transporter / oligopeptide ABC transporter inner membrane subunit OppC" ["OppC"] "MMLSKKNSETLENFSEKLEVEGRSLWQDARRRFMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWAMMSSAPDMESGHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPKDR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"OPPD-MONOMER" "murein tripeptide ABC transporter / oligopeptide ABC transporter ATP binding subunit OppD" ["OppD"] "MSVIETATVPLAQQQADALLNVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEHELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKNMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLVVVAGICDKVLVMYAGRTMEYGNARDVFYQPVHPYSIGLLNAVPRLDAEGETMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICSSAPPLEEFTPGRLRACFKPVEELL" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 -"OPPF-MONOMER" "murein tripeptide ABC transporter / oligopeptide ABC transporter ATP binding subunit OppF" ["OppF"] "MNAVTEGRKVLLEIADLKVHFEIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGHVAWLGKELLGMKPDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKMSRQEVRERVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTRALMSAVPIPDPDLEKNKTIQLLEGELPSPINPPSGCVFRTRCPIAGPECAKTRPVLEGSFRHSVSCLKVDPL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"OPPD-MONOMER" "murein tripeptide ABC transporter / oligopeptide ABC transporter ATP binding subunit OppD" ["OppD"] "MSVIETATVPLAQQQADALLNVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEHELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKNMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLVVVAGICDKVLVMYAGRTMEYGNARDVFYQPVHPYSIGLLNAVPRLDAEGETMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICSSAPPLEEFTPGRLRACFKPVEELL" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"OPPF-MONOMER" "murein tripeptide ABC transporter / oligopeptide ABC transporter ATP binding subunit OppF" ["OppF"] "MNAVTEGRKVLLEIADLKVHFEIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGHVAWLGKELLGMKPDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKMSRQEVRERVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTRALMSAVPIPDPDLEKNKTIQLLEGELPSPINPPSGCVFRTRCPIAGPECAKTRPVLEGSFRHSVSCLKVDPL" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "OPPSYN-MONOMER" "all-trans-octaprenyl-diphosphate synthase" ["Cel", "YhbD", "IspB"] "MNLEKINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIVSGGGKRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALIGLAHIAVQRDR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 2} 1 "ORNDECARBOX-BIO-MONOMER" "constitutive ornithine decarboxylase" ["SpeC", "ornithine decarboxylase, biosynthetic"] "MKSMNIAASSELVSRLSSHRRVVALGDTDFTDVAAVVITAADSRSGILALLKRTGFHLPVFLYSEHAVELPAGVTAVINGNEQQWLELESAACQYEENLLPPFYDTLTQYVEMGNSTFACPGHQHGAFFKKHPAGRHFYDFFGENVFRADMCNADVKLGDLLIHEGSAKDAQKFAAKVFHADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNHHGALIQAGATPVYLEASRNPFGFIGGIDAHCFNEEYLRQQIRDVAPEKADLPRPYRLAIIQLGTYDGTVYNARQVIDTVGHLCDYILFDSAWVGYEQFIPMMADSSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIRGQARFCPHKRLNNAFMLHASTSPFYPLFAALDVNAKIHEGESGRRLWAECVEIGIEARKAILARCKLFRPFIPPVVDGKLWQDYPTSVLASDRRFFSFEPGAKWHGFEGYAADQYFVDPCKLLLTTPGIDAETGEYSDFGVPATILAHYLRENGIVPEKCDLNSILFLLTPAESHEKLAQLVAMLAQFEQHIEDDSPLVEVLPSVYNKYPVRYRDYTLRQLCQEMHDLYVSFDVKDLQKAMFRQQSFPSVVMNPQDAHSAYIRGDVELVRIRDAEGRIAAEGALPYPPGVLCVVPGEVWGGAVQRYFLALEEGVNLLPGFSPELQGVYSETDADGVKRLYGYVLK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "ORNDECARBOXDEG-MONOMER" "inducible ornithine decarboxylase" ["SpeF", "ornithine decarboxylase, degradative"] "MSKLKIAVSDSCPDCFTTQRECIYINESRNIDVAAIVLSLNDVTCGKLDEIDATGYGIPVFIATENQERVPAEYLPRISGVFENCESRREFYGRQLETAASHYETQLRPPFFRALVDYVNQGNSAFDCPGHQGGEFFRRHPAGNQFVEYFGEALFRADLCNADVAMGDLLIHEGAPCIAQQHAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGALLQAGATPVYLETARNPYGFIGGIDAHCFEESYLRELIAEVAPQRAKEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMADCSPLLLDLNENDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQQRYVPHKRMNNAFMMHASTSPFYPLFAALNINAKMHEGVSGRNMWMDCVVNGINARKLILDNCQHIRPFVPELVDGKPWQSYETAQIAVDLRFFQFVPGEHWHSFEGYAENQYFVDPCKLLLTTPGIDARNGEYEAFGVPATILANFLRENGVVPEKCDLNSILFLLTPAEDMAKLQQLVALLVRFEKLLESDAPLAEVLPSIYKQHEERYAGYTLRQLCQEMHDLYARHNVKQLQKEMFRKEHFPRVSMNPQEANYAYLRGEVELVRLPDAEGRIAAEGALPYPPGVLCVVPGEIWGGAVLRYFSALEEGINLLPGFAPELQGVYIEEHDGRKQVWCYVIKPRDAQSTLLKGEKL" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"OROPRIBTRANS-MONOMER" "orotate phosphoribosyltransferase" ["PyrE"] "MKPYQRQFIEFALSKQVLKFGEFTLKSGRKSPYFFNAGLFNTGRDLALLGRFYAEALVDSGIEFDLLFGPAYKGIPIATTTAVALAEHHDLDLPYCFNRKEAKDHGEGGNLVGSALQGRVMLVDDVITAGTAIRESMEIIQANGATLAGVLISLDRQERGRGEISAIQEVERDYNCKVISIITLKDLIAYLEEKPEMAEHLAAVKAYREEFGV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 +"OROPRIBTRANS-MONOMER" "orotate phosphoribosyltransferase" ["PyrE", "OPRTase"] "MKPYQRQFIEFALSKQVLKFGEFTLKSGRKSPYFFNAGLFNTGRDLALLGRFYAEALVDSGIEFDLLFGPAYKGIPIATTTAVALAEHHDLDLPYCFNRKEAKDHGEGGNLVGSALQGRVMLVDDVITAGTAIRESMEIIQANGATLAGVLISLDRQERGRGEISAIQEVERDYNCKVISIITLKDLIAYLEEKPEMAEHLAAVKAYREEFGV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "OROTPDECARB-MONOMER" "orotidine-5'-phosphate decarboxylase" ["PyrF"] "MTLTASSSSRAVTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQRSA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "PABASYN-COMPI-MONOMER" "aminodeoxychorismate synthase subunit 1" ["ADC synthase", "PabB", "aminodeoxychorismate synthase component 1"] "MKTLSPAVITLLWRQDAAEFYFSRLSHLPWAMLLHSGYADHPYSRFDIVVAEPICTLTTFGKETVVSESEKRTTTTDDPLQVLQQVLDRADIRPTHNEDLPFQGGALGLFGYDLGRRFESLPEIAEQDIVLPDMAVGIYDWALIVDHQRHTVSLLSHNDVNARRAWLESQQFSPQEDFTLTSDWQSNMTREQYGEKFRQVQEYLHSGDCYQVNLAQRFHATYSGDEWQAFLQLNQANRAPFSAFLRLEQGAILSLSPERFILCDNSEIQTRPIKGTLPRLPDPQEDSKQAVKLANSAKDRAENLMIVDLMRNDIGRVAVAGSVKVPELFVVEPFPAVHHLVSTITAQLPEQLHASDLLRAAFPGGSITGAPKVRAMEIIDELEPQRRNAWCGSIGYLSFCGNMDTSITIRTLTAINGQIFCSAGGGIVADSQEEAEYQETFDKVNRILKQLEK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "PABASYN-COMPII-MONOMER" "aminodeoxychorismate synthase subunit 2" ["glutamine amidotransferase", "PabA", "aminodeoxychorismate synthase, glutamine amidotransferase component"] "MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRAAKVMHGKTSPITHNGEGVFRGLANPLTVTRYHSLVVEPDSLPACFDVTAWSETREIMGIRHRQWDLEGVQFHPESILSEQGHQLLANFLHR" [] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -3932,7 +3932,7 @@ "PD00230" "DNA-binding transcriptional dual regulator / DNA repair protein Ada" ["Ada"] "MKKATCLTDDQRWQSVLARDPNADGEFVFAVRTTGIFCRPSCRARHALRENVSFYANASEALAAGFRPCKRCQPEKANAQQHRLDKITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKATTGMTPKAWQQAWRARRLRESLAKGESVTTSILNAGFPDSSSYYRKADETLGMTAKQFRHGGENLAVRYALADCELGRCLVAESERGICAILLGDDDATLISELQQMFPAADNAPADLMFQQHVREVIASLNQRDTPLTLPLDIRGTAFQQQVWQALRTIPCGETVSYQQLANAIGKPKAVRAVASACAANKLAIIIPCHRVVRGDGTLSGYRWGVSRKAQLLRREAENEER" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 "PD00232" "DNA-binding transcriptional dual regulator CysB" ["positive transcriptional regulator for cysteine regulon", "CysB"] "MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFSRSGKHLTQVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPNVIKGFIERYPRVSLHMHQGSPTQIADAVSKGNADFAIATEALHLYEDLVMLPCYHWNRAIVVTPDHPLAGKKAITIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMAVDPVADPDLVRVDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRDVVDAAVALRSNEEIEVMFKDIKLPEK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "PD00237" "DNA-binding transcriptional activator MalT" ["MalA", "MalT"] "MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMMGYGV" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"PD00242" "AraC" ["AraC"] "MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 +"PD00242" "DNA-binding transcriptional dual regulator AraC" ["AraC"] "MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "PD00250" "DNA-binding transcriptional dual regulator AsnC" ["AsnC"] "MENYLIDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVEKMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSAKDYPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETLIVLQNPIMRTIKP" [] ["CCO-CYTOSOL"] 0 [] {} 1 "PD00251" "DNA-binding transcriptional repressor BetI" ["BetI"] "MPKLGMQSIRRRQLIDATLEAINEVGMHDATIAQIARRAGVSTGIISHYFRDKNGLLEATMRDITSQLRDAVLNRLHALPQGSAEQRLQAIVGGNFDETQVSSAAMKAWLAFWASSMHQPMLYRLQQVSSRRLLSNLVSEFRRELPREQAQEAGYGLAALIDGLWLRAALSGKPLDKTRANSLTRHFITQHLPTD" [] ["CCO-CYTOSOL"] 0 [] {} 1 "PD00257" "DNA-binding transcriptional dual regulator CRP" ["GurB", "Csm", "Cap", "Crp"] "MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 @@ -3958,22 +3958,22 @@ "PD00406" "DNA-binding transcriptional dual regulator SoxS" ["SoxS", "regulation of superoxide response regulon"] "MSHQKIIQDLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTPSDYRHRL" [] ["CCO-CYTOSOL"] 1 [] {} 0 "PD00413" "DNA-binding transcriptional dual regulator TyrR" ["TyrR"] "MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNEE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "PD00423" "DNA-binding transcriptional repressor TrpR" ["RtrY", "TrpR"] "MAQQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD" [] ["CCO-CYTOSOL"] 1 [] {} 1 -"PD00436" "DNA-binding transcriptional activator CadC" ["CadC"] "MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKFLASE" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"PD00436" "DNA-binding transcriptional activator CadC" ["CadC"] "MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKFLASE" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "PD00440" "RNA polymerase sigma factor FecI" ["FecI", "σ19", "RNA polymerase, sigma 19 factor"] "MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL" [] ["CCO-CYTOSOL"] 1 [] {} 1 "PD00444" "DNA-binding transcriptional activator FucR" ["FucR"] "MKAARQQAIVDLLLNHTSLTTEALSEQLKVSKETIRRDLNELQTQGKILRNHGRAKYIHRQNQDSGDPFHIRLKSHYAHKADIAREALAWIEEGMVIALDASSTCWYLARQLPDINIQVFTNSHPICHELGKRERIQLISSGGTLERKYGCYVNPSLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEARIGHLDEVTHIISDERQVATSLVTA" [] ["CCO-CYTOSOL"] 0 [] {} 1 "PD00474" "DNA-binding transcriptional activator NhaR" ["YaaB", "AntO", "NhaR"] "MSMSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADALSKRLVSSVLNAAVVEGEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGLFSVRIGECGVSFWCTNPPPEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGAMHNAIFVAPTLYAYDFYADKTVVEIGRVENVMEEYHAIFAERMIQHPAVQRICNTDYSALFSPAVR" [] ["CCO-CYTOSOL"] 0 [] {} 1 "PD00519" "DNA-binding transcriptional dual regulator LeuO" ["LeuO"] "MPEVQTDHPETAELSKPQLRMVDLNLLTVFDAVMQEQNITRAAHVLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPGSGFEPASSERVFHLCVCSPLDSILTSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRYQETEFVISYEDFHRPEFTSVPLFKDEMVLVASKNHPTIKGPLLKHDVYNEQHAAVSLDRFASFSQPWYDTVDKQASIAYQGMAMMSVLSVVSQTHLVAIAPRWLAEEFAESLELQVLPLPLKQNSRTCYLSWHEAAGRDKGHQWMEEQLVSICKR" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"PD00521" "DNA-binding transcriptional dual regulator Cra" ["Shl", "FruC", "FruR", "Cra"] "MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSYEREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVAERVLEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS" [] ["CCO-CYTOSOL"] 0 [] {} 1 +"PD00521" "DNA-binding transcriptional regulator Cra" ["Shl", "FruC", "FruR", "Cra"] "MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSYEREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVAERVLEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS" [] ["CCO-CYTOSOL"] 0 [] {} 1 "PD00763" "DNA-binding transcriptional repressor LacI" ["LacI", "transcriptional repressor of the lac operon"] "MKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGVEACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPLTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNTQTASPRALADSLMQLARQVSRLESGQ" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "PD00967" "DLP12 prophage; DNA-binding transcriptional activator AppY" ["AppY"] "MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDGINKTID" [] ["CCO-CYTOSOL"] 0 [] {} 0 "PD00969" "DNA-binding transcriptional activator EnvY" ["EnvY", "envelope protein; thermoregulation of porin biosynthesis"] "MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKVMW" ["CCO-MEMBRANE"] ["CCO-CYTOSOL"] 0 [] {} 0 "PD01103" "DNA-binding transcriptional repressor MngR" ["YbgB", "FarR", "MngR"] "MGHKPLYRQIADRIREQIARGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILESIQGSGTYVKEERVNYDIFQLTSFDEKLSDRHVDTHSEVLIFEVIPADDFLQQQLQITPQDRVWHVKRVRYRKQKPMALEETWMPLALFPDLTWQVMENSKYHFIEEVKKMVIDRSEQEIIPLMPTEEMSRLLNISQTKPILEKVSRGYLVDGRVFEYSRNAFNTDDYKFTLIAQRKSSR" [] ["CCO-CYTOSOL"] 0 [] {} 1 "PD01196" "DNA-binding transcriptional repressor DeoR" ["NucR", "DeoR", "transcriptional repressor for deo operon, tsx, nupG"] "METRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNNHSAPVVLLGGYIVLEPRSASHYLLSDQKSRLVEEKRRAAKLAATLVEPDQTLFFDCGTTTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKPIDFQQTLNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPARMGDLKRFDIVVSDCCPEDEYVKYAQTQRIKLMY" [] ["CCO-CYTOSOL"] 0 [] {} 0 "PD01343" "NAD(P)H:quinone oxidoreductase" ["WrbA"] "MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-MEMBRANE"] 1 [] {} 1 -"PD01352" "DNA-binding transcriptional dual regulator RutR" ["YcdC", "RutR"] "MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"PD01379" "DNA-binding transcriptional dual regulator CsgD" ["CsgD"] "MFNEVHSIHGHTLLLITKSSLQATALLQHLKQSLAITGKLHNIQRSLDDISSGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWPHINGVFYSMEDQERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 +"PD01352" "DNA-binding transcriptional regulator RutR" ["YcdC", "RutR"] "MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR" [] ["CCO-CYTOSOL"] 0 [] {} 1 +"PD01379" "DNA-binding transcriptional dual regulator CsgD" ["CsgD"] "MFNEVHSIHGHTLLLITKSSLQATALLQHLKQSLAITGKLHNIQRSLDDISSGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWPHINGVFYSMEDQERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "PD01520" "DNA-binding transcriptional dual regulator FadR" ["Ole", "Dec", "ThdB", "OleR", "FadR"] "MVIKAQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDHESVPQLIDNLLSVRTNISTIFIRTAFRQHPDKAQEVLATANEVADHADAFAELDYNIFRGLAFASGNPIYGLILNGMKGLYTRIGRHYFANPEARSLALGFYHKLSALCSEGAHDQVYETVRRYGHESGEIWHRMQKNLPGDLAIQGR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 -"PD01896" "DNA-binding transcriptional repressor Mlc" ["Mlc", "DgsA"] "MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 +"PD01896" "DNA-binding transcriptional repressor Mlc" ["Mlc", "DgsA"] "MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG" [] ["CCO-CYTOSOL"] 0 [] {} 1 "PD02198" "DNA-binding transcriptional dual regulator SdiA" ["SdiA"] "MQDKDFFSWRRTMLLRFQRMETAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI" [] ["CCO-CYTOSOL"] 0 [] {} 0 "PD02233" "DNA-binding transcriptional activator RcsA" ["CpsR", "RcsA", "positive regulator of capsular polysaccharide synthesis", "positive DNA-binding transcriptional regulator of capsular polysaccharide synthesis, activates its own expression"] "MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSQRPSVVFINEDCFIHDASNSQRIKLIINQHPNTLFIVFMAIANVHFDEYLLVRKNLLISSKSIKPESLDDILGDILKKETTITSFLNMPTLSLSRTESSMLRMWMAGQGTIQISDQMNIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTDNVTNGIFVNMR" [] ["CCO-CYTOSOL"] 0 [] {} 1 "PD02850" "CP4-57 prophage; DNA-binding transcriptional activator AlpA" ["AlpA"] "MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCKLI" [] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -3992,7 +3992,7 @@ "PD04032" "DNA-binding transcriptional repressor MetJ" ["MetJ"] "MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINPETWEY" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "PD04099" "DNA-binding transcriptional repressor IclR" ["IclR"] "MVAPIPAKRGRKPAVATAPATGQVQSLTRGLKLLEWIAESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWAIGAHAFMVGSSFLQSRNLLAIVHPILRNLMEESGETVNMAVLDQSDHEAIIIDQVQCTHLMRMSAPIGGKLPMHASGAGKAFLAQLSEEQVTKLLHRKGLHAYTHATLVSPVHLKEDLAQTRKRGYSFDDEEHALGLRCLAACIFDEHREPFAAISISGPISRITDDRVTEFGAMVIKAAKEVTLAYGGMR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "PD04132" "DNA-binding transcriptional dual regulator SoxR" ["MarC", "SoxR"] "MEKKLPRIKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDRLGEEGTGARLLEDEQN" ["CCO-CYTOSOL"] [] 0 [] {"CPD-6": 1} 0 -"PD04413" "DNA-binding transcriptional repressor/NMN adenylyltransferase NadR" ["NadI", "NadR"] "MSSFDYLKTAIKQQGCTLQQVADASGMTKGYLSQLLNAKIKSPSAQKLEALHRFLGLEFPRQKKTIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGFDDTRDRALFEDSAMSQQPTVPDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHGWDVWSNGIKKFMAEKGIQPDLIYTSEEADAPQYMEHLGIETVLVDPKRTFMSISGAQIRENPFRYWEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDEIALQYSDYDKIALGHAQYIDFAVKYANKVAFIDTDFVTTQAFCKKYEGREHPFVQALIDEYRFDLVILLENNTPWVADGLRSLGSSVDRKEFQNLLVEMLEENNIEFVRVEEEDYDSRFLRCVELVREMMGEQR" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 1 +"PD04413" "DNA-binding transcriptional repressor/NMN adenylyltransferase NadR" ["NadI", "NadR"] "MSSFDYLKTAIKQQGCTLQQVADASGMTKGYLSQLLNAKIKSPSAQKLEALHRFLGLEFPRQKKTIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGFDDTRDRALFEDSAMSQQPTVPDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHGWDVWSNGIKKFMAEKGIQPDLIYTSEEADAPQYMEHLGIETVLVDPKRTFMSISGAQIRENPFRYWEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDEIALQYSDYDKIALGHAQYIDFAVKYANKVAFIDTDFVTTQAFCKKYEGREHPFVQALIDEYRFDLVILLENNTPWVADGLRSLGSSVDRKEFQNLLVEMLEENNIEFVRVEEEDYDSRFLRCVELVREMMGEQR" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 "PD04418" "DNA-binding transcriptional dual regulator Rob" ["RobA", "CbpB", "Rob", "right origin-binding protein"] "MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "PDXA-MONOMER" "4-hydroxythreonine-4-phosphate dehydrogenase" ["PdxA"] "MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTNRAAMLGLPLTLRPYSPNSPAQPQTAGTLTLLPVALRAPVTAGQLAVENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLNELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGKADVGSFITALNLAIKMIVNTQ" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "PDXH-MONOMER" "pyridoxine/pyridoxamine 5'-phosphate oxidase" ["PdxH", "pyridoxal 5-phosphate synthase"] "MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 @@ -4008,10 +4008,10 @@ "PGLUCISOM" "glucose-6-phosphate isomerase" ["Pgi"] "MKNINPTQTAAWQALQKHFDEMKDVTIADLFAKDGDRFSKFSATFDDQMLVDYSKNRITEETLAKLQDLAKECDLAGAIKSMFSGEKINRTENRAVLHVALRNRSNTPILVDGKDVMPEVNAVLEKMKTFSEAIISGEWKGYTGKAITDVVNIGIGGSDLGPYMVTEALRPYKNHLNMHFVSNVDGTHIAEVLKKVNPETTLFLVASKTFTTQETMTNAHSARDWFLKAAGDEKHVAKHFAALSTNAKAVGEFGIDTANMFEFWDWVGGRYSLWSAIGLSIVLSIGFDNFVELLSGAHAMDKHFSTTPAEKNLPVLLALIGIWYNNFFGAETEAILPYDQYMHRFAAYFQQGNMESNGKYVDRNGNVVDYQTGPIIWGEPGTNGQHAFYQLIHQGTKMVPCDFIAPAITHNPLSDHHQKLLSNFFAQTEALAFGKSREVVEQEYRDQGKDPATLDYVVPFKVFEGNRPTNSILLREITPFSLGALIALYEHKIFTQGVILNIFTFDQWGVELGKQLANRILPELKDDKEISSHDSSTNGLINRYKAWRG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "PGLUCONDEHYDRAT-MONOMER" null ["Edd"] "MNPQLLRVTNRIIERSRETRSAYLARIEQAKTSTVHRSQLACGNLAHGFAACQPEDKASLKSMLRNNIAIITSYNDMLSAHQPYEHYPEIIRKALHEANAVGQVAGGVPAMCDGVTQGQDGMELSLLSREVIAMSAAVGLSHNMFDGALFLGVCDKIVPGLTMAALSFGHLPAVFVPSGPMASGLPNKEKVRIRQLYAEGKVDRMALLESEAASYHAPGTCTFYGTANTNQMVVEFMGMQLPGSSFVHPDSPLRDALTAAAARQVTRMTGNGNEWMPIGKMIDEKVVVNGIVALLATGGSTNHTMHLVAMARAAGIQINWDDFSDLSDVVPLMARLYPNGPADINHFQAAGGVPVLVRELLKAGLLHEDVNTVAGFGLSRYTLEPWLNNGELDWREGAEKSLDSNVIASFEQPFSHHGGTKVLSGNLGRAVMKTSAVPVENQVIEAPAVVFESQHDVMPAFEAGLLDRDCVVVVRHQGPKANGMPELHKLMPPLGVLLDRCFKIALVTDGRLSGASGKVPSAIHVTPEAYDGGLLAKVRDGDIIRVNGQTGELTLLVDEAELAAREPHIPDLSASRVGTGRELFSALREKLSGAEQGATCITF" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 0 "PGLYCDEHYDROG-MONOMER" "phosphoglycerate dehydrogenase" ["SerA", "PHGDH"] "MAKVSLEKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLLY" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 -"PGLYCEROLTRANSI-MONOMER" "phosphoglycerol transferase I" ["OpgB", "YjjO", "MdoB"] "MSELLSFALFLASVLIYAWKAGRNTWWFAATLTVLGLFVVLNITLFASDYFTGDGINDAVLYTLTNSLTGAGVSKYILPGIGIVLGLTAVFGALGWILRRRRHHPHHFGYSLLALLLALGSVDASPAFRQITELVKSQSRDGDPDFAAYYKEPSKTIPDPKLNLVYIYGESLERTYFDNEAFPDLTPELGALKNEGLDFSHTQQLPGTDYTIAGMVASQCGIPLFAPFEGNASASVSSFFPQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKSHGFDHLYGSEELKSVVADPHYRNDWGFYDDTVLDEAWKKFEELSRSGQRFSLFTLTVDTHHPDGFISRTCNRKKYDFDGKPNQSFSAVSCSQENIATFINKIKASPWFKDTVIVVSSDHLAMNNTAWKYLNKQDRNNLFFVIRGDKPQQETLAVKRNTMDNGATVLDILGGDNYLGLGRSSLSGQSMSEIFLNIKEKTLAWKPDIIRLWKFPKEMKEFTIDQQKNMIAFSGSHFRLPLLLRVSDKRVEPLPESEYSAPLRFQLADFAPRDNFVWVDRCYKMAQLWAPELALSTDWCVSQGQLGGQQIVQHVDKTTWQGKTAFKDTVIDMARYKGNVDTLKIVDNDIRYKADSFIFNVAGAPEEVKQFSGISRPESWGRWSNAQLGDEVKIEYKHPLPKKFDLVITAKAYGNNASRPIPVRVGNEEQTLVLGNEVTTTTLHFDNPTDADTLVIVPPEPVSTNEGNILGHSPRKLGIGMVEIKVVEREG" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"PGLYCEROLTRANSI-MONOMER" "phosphoglycerol transferase I" ["OpgB", "YjjO", "MdoB"] "MSELLSFALFLASVLIYAWKAGRNTWWFAATLTVLGLFVVLNITLFASDYFTGDGINDAVLYTLTNSLTGAGVSKYILPGIGIVLGLTAVFGALGWILRRRRHHPHHFGYSLLALLLALGSVDASPAFRQITELVKSQSRDGDPDFAAYYKEPSKTIPDPKLNLVYIYGESLERTYFDNEAFPDLTPELGALKNEGLDFSHTQQLPGTDYTIAGMVASQCGIPLFAPFEGNASASVSSFFPQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKSHGFDHLYGSEELKSVVADPHYRNDWGFYDDTVLDEAWKKFEELSRSGQRFSLFTLTVDTHHPDGFISRTCNRKKYDFDGKPNQSFSAVSCSQENIATFINKIKASPWFKDTVIVVSSDHLAMNNTAWKYLNKQDRNNLFFVIRGDKPQQETLAVKRNTMDNGATVLDILGGDNYLGLGRSSLSGQSMSEIFLNIKEKTLAWKPDIIRLWKFPKEMKEFTIDQQKNMIAFSGSHFRLPLLLRVSDKRVEPLPESEYSAPLRFQLADFAPRDNFVWVDRCYKMAQLWAPELALSTDWCVSQGQLGGQQIVQHVDKTTWQGKTAFKDTVIDMARYKGNVDTLKIVDNDIRYKADSFIFNVAGAPEEVKQFSGISRPESWGRWSNAQLGDEVKIEYKHPLPKKFDLVITAKAYGNNASRPIPVRVGNEEQTLVLGNEVTTTTLHFDNPTDADTLVIVPPEPVSTNEGNILGHSPRKLGIGMVEIKVVEREG" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "PGMI-MONOMER" "2,3-bisphosphoglycerate-independent phosphoglycerate mutase" ["GpmI", "GpmC", "GpmM", "YibO", "PgmI"] "MLVSKKPMVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPHTLIDASGLEVGLPDRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGAVDKAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAESSLKKFEEKFAALGKGRVASIIGRYYAMDRDNRWDRVEKAYDLLTLAQGEFQADTAVAGLQAAYARDENDEFVKATVIRAEGQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAVAYPPASLVNTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEESFKGEDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQMRDPATGQAHTAHTNLPVPLIYVGDKNVKAVEGGKLSDIAPTMLSLMGMEIPQEMTGKPLFIVE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MN+2": 2} 0 -"PGPPHOSPHAA-MONOMER" "phosphatidylglycerophosphatase A" ["YajN", "PgpA"] "MTILPRHKDVAKSRLKMSNPWHLLAVGFGSGLSPIVPGTMGSLAAIPFWYLMTFLPWQLYSLVVMLGICIGVYLCHQTAKDMGVHDHGSIVWDEFIGMWITLMALPTNDWQWVAAGFVIFRILDMWKPWPIRWFDRNVHGGMGIMIDDIVAGVISAGILYFIGHHWPLGILS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"PGPPHOSPHAB-MONOMER" "phosphatidylglycerophosphatase B" ["PgpB"] "MRSIARRTAVGAALLLVMPVAVWISGWRWQPGEQSWLLKAAFWVTETVTQPWGVITHLILFGWFLWCLRFRIKAAFVLFAILAAAILVGQGVKSWIKDKVQEPRPFVIWLEKTHHIPVDEFYTLKRAERGNLVKEQLAEEKNIPQYLRSHWQKETGFAFPSGHTMFAASWALLAVGLLWPRRRTLTIAILLVWATGVMGSRLLLGMHWPRDLVVATLISWALVAVATWLAQRICGPLTPPAEENREIAQREQES" ["CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] 1 [] {} 0 +"PGPPHOSPHAA-MONOMER" "phosphatidylglycerophosphatase A" ["YajN", "PgpA"] "MTILPRHKDVAKSRLKMSNPWHLLAVGFGSGLSPIVPGTMGSLAAIPFWYLMTFLPWQLYSLVVMLGICIGVYLCHQTAKDMGVHDHGSIVWDEFIGMWITLMALPTNDWQWVAAGFVIFRILDMWKPWPIRWFDRNVHGGMGIMIDDIVAGVISAGILYFIGHHWPLGILS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"PGPPHOSPHAB-MONOMER" "phosphatidylglycerophosphatase B" ["PgpB"] "MRSIARRTAVGAALLLVMPVAVWISGWRWQPGEQSWLLKAAFWVTETVTQPWGVITHLILFGWFLWCLRFRIKAAFVLFAILAAAILVGQGVKSWIKDKVQEPRPFVIWLEKTHHIPVDEFYTLKRAERGNLVKEQLAEEKNIPQYLRSHWQKETGFAFPSGHTMFAASWALLAVGLLWPRRRTLTIAILLVWATGVMGSRLLLGMHWPRDLVVATLISWALVAVATWLAQRICGPLTPPAEENREIAQREQES" ["CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] ["CCO-PM-BAC-NEG", "CCO-OUTER-MEM"] 1 [] {} 0 "PHENDEHYD-MONOMER" "phenylacetaldehyde dehydrogenase" ["YdbG", "PadA", "FeaB"] "MTEPHVAVLSQVQQFLDRQHGLYIDGRPGPAQSEKRLAIFDPATGQEIASTADANEADVDNAVMSAWRAFVSRRWAGRLPAERERILLRFADLVEQHSEELAQLETLEQGKSIAISRAFEVGCTLNWMRYTAGLTTKIAGKTLDLSIPLPQGARYQAWTRKEPVGVVAGIVPWNFPLMIGMWKVMPALAAGCSIVIKPSETTPLTMLRVAELASEAGIPDGVFNVVTGSGAVCGAALTSHPHVAKISFTGSTATGKGIARTAADHLTRVTLELGGKNPAIVLKDADPQWVIEGLMTGSFLNQGQVCAASSRIYIEAPLFDTLVSGFEQAVKSLQVGPGMSPVAQINPLVSRAHCDKVCSFLDDAQAQQAELIRGSNGPAGEGYYVAPTLVVNPDAKLRLTREEVFGPVVNLVRVADGEEALQLANDTEYGLTASVWTQNLSQALEYSDRLQAGTVWVNSHTLIDANLPFGGMKQSGTGRDFGPDWLDGWCETKSVCVRY" [] ["CCO-CYTOSOL"] 0 [] {} 1 "PHENPRODIOLDEHYDROG-MONOMER" "2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase" ["YfhX", "PhdD", "HcaB"] "MSDLHNESIFITGGGSGLGLALVERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASEGSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAPKVRVNGVGPCGMASDLRGPQALGQSETSIMQSLTPEKIAAILPLQFFPQPADFTGPYVMLTSRRNNRALSGVMINADAGLAIRGIRHVAAGLDL" [] ["CCO-CYTOSOL"] 0 [] {} 0 "PHENYLPRODIOXY-MONOMER" "putative 3-phenylpropionate/cinnamate dioxygenase subunit α" ["DigA", "YfhU", "HcaA", "HcaE", "HcaA1", "3-phenylpropionate dioxygenase, large subunit", "3-phenylpropionate dioxygenase, α subunit"] "MTTPSDLNIYQLIDTQNGRVTPRIYTDPDIYQLELERIFGRCWLFLAHESQIPKPGDFFNTYMGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVPLEPRAYPQGLCKSHWGLNEVPCVESYKGLIFGNWDTSAPGLRDYLGDIAWYLDGMLDRREGGTEIVGGVQKWVINCNWKFPAEQFASDQYHALFSHASAVQVLGAKDDGSDKRLGDGQTARPVWETAKDALQFGQDGHGSGFFFTEKPDANVWVDGAVSSYYRETYAEAEQRLGEVRALRLAGHNNIFPTLSWLNGTATLRVWHPRGPDQVEVWAFCITDKAASDEVKAAFENSATRAFGPAGFLEQDDSENWCEIQKLLKGHRARNSKLCLEMGLGQEKRRDDGIPGITNYIFSETAARGMYQRWADLLSSESWQEVLDKTAAYQQEVMK" [] ["CCO-CYTOSOL"] 0 [] {"CPD-6": 1, "FE+2": 1} 1 @@ -4020,9 +4020,9 @@ "PHET-MONOMER" "phenylalanine—tRNA ligase subunit β" ["PheT"] "MKFSELWLREWVNPAIDSDALANQITMAGLEVDGVEPVAGSFHGVVVGEVVECAQHPNADKLRVTKVNVGGDRLLDIVCGAPNCRQGLRVAVATIGAVLPGDFKIKAAKLRGEPSEGMLCSFSELGISDDHSGIIELPADAPIGTDIREYLKLDDNTIEISVTPNRADCLGIIGVARDVAVLNQLPLVQPEIVPVGATIDDTLPITVEAPEACPRYLGRVVKGINVKAPTPLWMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGIVVRMAKEGETLVLLDGTEAKLNADTLVIADHNKALAMGGIFGGEHSGVNDETQNVLLECAFFSPLSITGRARRHGLHTDASHRYERGVDPALQHKAMERATRLLIDICGGEAGPVIDITNEATLPKRATITLRRSKLDRLIGHHIADEQVTDILRRLGCEVTEGKDEWQAVAPSWRFDMEIEEDLVEEVARVYGYNNIPDEPVQASLIMGTHREADLSLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLTGKLNEVEFRAEANPALHPGQSAAIYLKGERIGFVGVVHPELERKLDLNGRTLVFELEWNKLADRVVPQAREISRFPANRRDIAVVVAENVPAADILSECKKVGVNQVVGVNLFDVYRGKGVAEGYKSLAISLILQDTSRTLEEEEIAATVAKCVEALKERFQASLRD" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "PHNC-MONOMER" "phosphonate/phosphate ABC transporter ATP binding subunit" ["cryptic phosphonate ABC transporter ATP binding subunit"] "MQTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSVGSHIELLGRTVQREGRLARDIRKSRAHTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTGEQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNERFDHLYRSINRVEENAKAA" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 "PHND-MONOMER" "phosphonate/phosphate ABC transporter periplasmic binding protein" ["Phn", "PsiD", "cryptic phosphonate ABC transporter periplasmic binding protein"] "MNAKIIASLAFTSMFSLSTLLSPAHAEEQEKALNFGIISTESQQNLKPQWTPFLQDMEKKLGVKVNAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSPINNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERLGWAPFRASSDLQLVPIRQLALFKEMQGVKSNKGLNEQDKLAKTTEIQAQLDDLDRLNNALSAMSSVSKAVQ" [] ["CCO-PERI-BAC"] 0 [] {} 1 -"PHNE-MONOMER" "phosphonate/phosphate ABC transporter membrane subunit" [] "MPDAVQAPYPAYRPEPNMQTITIAPPKRSWFSLLSWAVVLAVLVVSWQGAEMAPLTLIKDGGNMATFAADFFPPDFSQWQDYLTEMAVTLQIAVWGTALAVVLSIPFGLMSAENLVPWWVYQPVRRLMDACRAINEMVFAMLFVVAVGLGPFAGVLACWRCLSTPPACSPSCFPKRWKRLSPARWKAFAPPVPTSSKRSSTACCHR*CHC*SPTPSIASNPTSARRPSSAWSAQAGSASPCGKRFAVSSSNKPAP*WCLSSSRSACWISSLNGCVSTL" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"PHNK-MONOMER" "ATP-binding cassette protein PhnK" ["PhnK"] "MNQPLLSVNNLTHLYAPGKGFSDVSFDLWPGEVLGIVGESGSGKTTLLKSISARLTPQQGEIHYENRSLYAMSEADRRRLLRTEWGVVHQHPLDGLRRQVSAGGNIGERLMATGARHYGDIRATAQKWLEEVEIPANRIDDLPTTFSGGMQQRLQIARNLVTHPKLVFMDEPTGGLDVSVQARLLDLLRGLVVELNLAVVIVTHDLGVARLLADRLLVMKQGQVVESGLTDRVLDDPHHPYTQLLVSSVLQN" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"PHNL-MONOMER" "ATP-binding cassette protein PhnL" ["PhnL"] "MINVQNVSKTFILHQQNGVRLPVLNRASLTVNAGECVVLHGHSGSGKSTLLRSLYANYLPDEGQIQIKHGDEWVDLVTAPARKVVEIRKTTVGWVSQFLRVIPRISALEVVMQPLLDTGVPREACAAKAARLLTRLNVPERLWHLAPSTFSGGEQQRVNIARGFIVDYPILLLDEPTASLDAKNSAAVVELIREAKTRGAAIVGIFHDEAVRNDVADRLHPMGASS" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 +"PHNE-MONOMER" "phosphonate/phosphate ABC transporter membrane subunit PhnE1" [] "MPDAVQAPYPAYRPEPNMQTITIAPPKRSWFSLLSWAVVLAVLVVSWQGAEMAPLTLIKDGGNMATFAADFFPPDFSQWQDYLTEMAVTLQIAVWGTALAVVLSIPFGLMSAENLVPWWVYQPVRRLMDACRAINEMVFAMLFVVAVGLGPFAGVLACWRCLSTPPACSPSCFPKRWKRLSPARWKAFAPPVPTSSKRSSTACCHR*CHC*SPTPSIASNPTSARRPSSAWSAQAGSASPCGKRFAVSSSNKPAP*WCLSSSRSACWISSLNGCVSTL" [] [] 0 [] {} 1 +"PHNK-MONOMER" "carbon-phosphorus lyase ATP-binding protein PhnK" ["PhnK"] "MNQPLLSVNNLTHLYAPGKGFSDVSFDLWPGEVLGIVGESGSGKTTLLKSISARLTPQQGEIHYENRSLYAMSEADRRRLLRTEWGVVHQHPLDGLRRQVSAGGNIGERLMATGARHYGDIRATAQKWLEEVEIPANRIDDLPTTFSGGMQQRLQIARNLVTHPKLVFMDEPTGGLDVSVQARLLDLLRGLVVELNLAVVIVTHDLGVARLLADRLLVMKQGQVVESGLTDRVLDDPHHPYTQLLVSSVLQN" [] ["CCO-CYTOSOL"] 0 [] {} 1 +"PHNL-MONOMER" "carbon-phosphorus lyase ATP-binding protein PhnL" ["PhnL"] "MINVQNVSKTFILHQQNGVRLPVLNRASLTVNAGECVVLHGHSGSGKSTLLRSLYANYLPDEGQIQIKHGDEWVDLVTAPARKVVEIRKTTVGWVSQFLRVIPRISALEVVMQPLLDTGVPREACAAKAARLLTRLNVPERLWHLAPSTFSGGEQQRVNIARGFIVDYPILLLDEPTASLDAKNSAAVVELIREAKTRGAAIVGIFHDEAVRNDVADRLHPMGASS" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 "PHOB-MONOMER" "DNA-binding transcriptional dual regulator PhoB" ["PhoB", "PhoT", "PhoB response regulator"] "MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF" [] ["CCO-CYTOSOL"] 0 [] {} 0 "PHOP-MONOMER" "DNA-binding transcriptional dual regulator PhoP" ["PhoP", "PhoP response regulator"] "MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "PHOQ-MONOMER" "sensor histidine kinase PhoQ" [] "MKKLLRLFFPLSLRVRFLLATAAVVLVLSLAYGMVALIGYSVSFDKTTFRLLRGESNLFYTLAKWENNKLHVELPENIDKQSPTMTLIYDENGQLLWAQRDVPWLMKMIQPDWLKSNGFHEIEADVNDTSLLLSGDHSIQQQLQEVREDDDDAEMTHSVAVNVYPATSRMPKLTIVVVDTIPVELKSSYMVWSWFIYVLSANLLLVIPLLWVAAWWSLRPIEALAKEVRELEEHNRELLNPATTRELTSLVRNLNRLLKSERERYDKYRTTLTDLTHSLKTPLAVLQSTLRSLRSEKMSVSDAEPVMLEQISRISQQIGYYLHRASMRGGTLLSRELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQHSAPKDE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"MG+2": 1} 1 @@ -4032,13 +4032,13 @@ "PHOSMANMUT-MONOMER" null ["RfbK", "CpsG", "ManB"] "MKKLTCFKAYDIRGKLGEELNEDIAWRIGRAYGEFLKPKTIVLGGDVRLTSETLKLALAKGLQDAGVDVLDIGMSGTEEIYFATFHLGVDGGIEVTASHNPMDYNGMKLVREGARPISGDTGLRDVQRLAEANDFPPVDETKRGRYQQINLRDAYVDHLFGYINVKNLTPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIPNPLLPECRDDTRNAVIKHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLEKNPGAKIIHDPRLSWNTVDVVTAAGGTPVMSKTGHAFIKERMRKEDAIYGGEMSAHHYFRDFAYCDSGMIPWLLVAELVCLKDKTLGELVRDRMAAFPASGEINSKLAQPVEAINRVEQHFSREALAVDRTDGISMTFADWRFNLRTSNTEPVVRLNVESRGDVPLMEARTRTLLTLLNE" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "PHOSNACMURPENTATRANS-MONOMER" null ["MurX", "MraY"] "MLVWLAEHLVKYYSGFNVFSYLTFRAIVSLLTALFISLWMGPRMIAHLQKLSFGQVVRNDGPESHFSKRGTPTMGGIMILTAIVISVLLWAYPSNPYVWCVLVVLVGYGVIGFVDDYRKVVRKDTKGLIARWKYFWMSVIALGVAFALYLAGKDTPATQLVVPFFKDVMPQLGLFYILLAYFVIVGTGNAVNLTDGLDGLAIMPTVFVAGGFALVAWATGNMNFASYLHIPYLRHAGELVIVCTAIVGAGLGFLWFNTYPAQVFMGDVGSLALGGALGIIAVLLRQEFLLVIMGGVFVVETLSVILQVGSFKLRGQRIFRMAPIHHHYELKGWPEPRVIVRFWIISLMLVLIGLATLKVR" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 "PHOSPHAGLYPSYN-MONOMER" "CDP-diacylglycerol—glycerol-3-phosphate 3-phosphatidyltransferase" ["PgsA"] "MQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAVTDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSSVAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVAAVLTLWSMLQYLSAARADLLDQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 1 [] {} 0 -"PHOSPHASERSYN-MONOMER" "phosphatidylserine synthase" ["Pss", "PssA"] "MLSKFKRNKHQQHLAQLPKISQSVDDVDFFYAPADFRETLLEKIASAKQRICIVALYLEQDDGGKGILNALYEAKRQRPELDVRVLVDWHRAQRGRIGAAASNTNADWYCRMAQENPGVDVPVYGVPINTREALGVLHFKGFIIDDSVLYSGASLNDVYLHQHDKYRYDRYHLIRNRKMSDIMFEWVTQNIMNGRGVNRLDDVNRPKSPEIKNDIRLFRQELRDAAYHFQGDADNDQLSVTPLVGLGKSSLLNKTIFHLMPCAEQKLTICTPYFNLPAILVRNIIQLLREGKKVEIIVGDKTANDFYIPEDEPFKIIGALPYLYEINLRRFLSRLQYYVNTDQLVVRLWKDDDNTYHLKGMWVDDKWMLITGNNLNPRAWRLDLENAILIHDPQLELAPQREKELELIREHTTIVKHYRDLQSIADYPVKVRKLIRRLRRIRIDRLISRIL" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 0 +"PHOSPHASERSYN-MONOMER" "phosphatidylserine synthase" ["Pss", "PssA"] "MLSKFKRNKHQQHLAQLPKISQSVDDVDFFYAPADFRETLLEKIASAKQRICIVALYLEQDDGGKGILNALYEAKRQRPELDVRVLVDWHRAQRGRIGAAASNTNADWYCRMAQENPGVDVPVYGVPINTREALGVLHFKGFIIDDSVLYSGASLNDVYLHQHDKYRYDRYHLIRNRKMSDIMFEWVTQNIMNGRGVNRLDDVNRPKSPEIKNDIRLFRQELRDAAYHFQGDADNDQLSVTPLVGLGKSSLLNKTIFHLMPCAEQKLTICTPYFNLPAILVRNIIQLLREGKKVEIIVGDKTANDFYIPEDEPFKIIGALPYLYEINLRRFLSRLQYYVNTDQLVVRLWKDDDNTYHLKGMWVDDKWMLITGNNLNPRAWRLDLENAILIHDPQLELAPQREKELELIREHTTIVKHYRDLQSIADYPVKVRKLIRRLRRIRIDRLISRIL" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "PHOSPHOGLUCMUT-MONOMER" null ["Blu", "Pgm"] "MAIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGTSGHRGSAARHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVEDRANALLADGLKGVKRISLDEAMASGHVKEQDLVQPFVEGLADIVDMAAIQKAGLTLGVDPLGGSGIEYWKRIGEYYNLNLTIVNDQVDQTFRFMHLDKDGAIRMDCSSECAMAGLLALRDKFDLAFANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQHRPQWGKDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAKRFGAPSYNRLQAAATSAQKAALSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNGWFAARPSGTEDAYKIYCESFLGEEHRKQIEKEAVEIVSEVLKNA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "PITA-MONOMER" "metal phosphate:H+ symporter PitA" ["PitA", "Pit"] "MLHLFAGLDLHTGLLLLLALAFVLFYEAINGFHDTANAVATVIYTRAMRSQLAVVMAAVFNFLGVLLGGLSVAYAIVHMLPTDLLLNMGSSHGLAMVFSMLLAAIIWNLGTWYFGLPASSSHTLIGAIIGIGLTNALMTGTSVVDALNIPKVLSIFGSLIVSPIVGLVFAGGLIFLLRRYWSGTKKRARIHLTPAEREKKDGKKKPPFWTRIALILSAIGVAFSHGANDGQKGIGLVMLVLIGVAPAGFVVNMNATGYEITRTRDAINNVEAYFEQHPALLKQATGADQLVPAPEAGATQPAEFHCHPSNTINALNRLKGMLTTDVESYDKLSLDQRSQMRRIMLCVSDTIDKVVKMPGVSADDQRLLKKLKSDMLSTIEYAPVWIIMAVALALGIGTMIGWRRVATTIGEKIGKKGMTYAQGMSAQMTAAVSIGLASYTGMPVSTTHVLSSSVAGTMVVDGGGLQRKTVTSILMAWVFTLPAAVLLSGGLYWLSLQFL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "PITB-MONOMER" "metal phosphate:H+ symporter PitB" ["PitB"] "MLNLFVGLDIYTGLLLLLALAFVLFYEAINGFHDTANAVAAVIYTRAMQPQLAVVMAAFFNFFGVLLGGLSVAYAIVHMLPTDLLLNMGSTHGLAMVFSMLLAAIIWNLGTWFFGLPASSSHTLIGAIIGIGLTNALLTGSSVMDALNLREVTKIFSSLIVSPIVGLVIAGGLIFLLRRYWSGTKKRDRIHRIPEDRKKKKGKRKPPFWTRIALIVSAAGVAFSHGANDGQKGIGLVMLVLVGIAPAGFVVNMNASGYEITRTRDAVTNFEHYLQQHPELPQKLIAMEPPLPAASTDGTQVTEFHCHPANTFDAIARVKTMLPGNMESYEPLSVSQRSQLRRIMLCISDTSAKLAKLPGVSKEDQNLLKKLRSDMLSTIEYAPVWIIMAVALALGIGTMIGWRRVAMTIGEKIGKRGMTYAQGMAAQMTAAVSIGLASYIGMPVSTTHVLSSAVAGTMVVDGGGLQRKTVTSILMAWVFTLPAAIFLSGGLYWIALQLI" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "PKI-MONOMER" "pyruvate kinase 1" ["PykF", "pyruvate kinase I"] "MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"K+": 1, "MG+2": 1} 1 "PKII-MONOMER" "pyruvate kinase 2" ["PykA", "pyruvate kinase II"] "MSRRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSPEDHKMRADKVREIAAKLGRHVAILGDLQGPKIRVSTFKEGKVFLNIGDKFLLDANLGKGEGDKEKVGIDYKGLPADVVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNKGINKLGGGLSAEALTEKDKADIKTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDAKIVAKVERAEAVCSQDAMDDIILASDVVMVARGDLGVEIGDPELVGIQKALIRRARQLNRAVITATQMMESMITNPMPTRAEVMDVANAVLDGTDAVMLSAETAAGQYPSETVAAMARVCLGAEKIPSINVSKHRLDVQFDNVEEAIAMSAMYAANHLKGVTAIITMTESGRTALMTSRISSGLPIFAMSRHERTLNLTALYRGVTPVHFDSANDGVAAASEAVNLLRDKGYLMSGDLVIVTQGDVMSTVGSTNTTRILTVE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"K+": 1, "MG+2": 1} 1 -"PNTA-MONOMER" "pyridine nucleotide transhydrogenase subunit α" ["PntA"] "MRIGIPRERLTNETRVAATPKTVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVWQSEIILKVNAPLDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTDLPGRLPTQSSQLYGTNLVNLLKLLCKEKDGNITVDFDDVVIRGVTVIRAGEITWPAPPIQVSAQPQAAQKAAPEVKTEEKCTCSPWRKYALMALAIILFGWMASVAPKEFLGHFTVFALACVVGYYVVWNVSHALHTPLMSVTNAISGIIVVGALLQIGQGGWVSFLSFIAVLIASINIFGGFTVTQRMLKMFRKN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"PNTA-MONOMER" "pyridine nucleotide transhydrogenase subunit α" ["PntA"] "MRIGIPRERLTNETRVAATPKTVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVWQSEIILKVNAPLDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTDLPGRLPTQSSQLYGTNLVNLLKLLCKEKDGNITVDFDDVVIRGVTVIRAGEITWPAPPIQVSAQPQAAQKAAPEVKTEEKCTCSPWRKYALMALAIILFGWMASVAPKEFLGHFTVFALACVVGYYVVWNVSHALHTPLMSVTNAISGIIVVGALLQIGQGGWVSFLSFIAVLIASINIFGGFTVTQRMLKMFRKN" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "PNTB-MONOMER" "pyridine nucleotide transhydrogenase subunit β" ["PntB"] "MSGGLVTAAYIVAAILFIFSLAGLSKHETSRQGNNFGIAGMAIALIATIFGPDTGNVGWILLAMVIGGAIGIRLAKKVEMTEMPELVAILHSFVGLAAVLVGFNSYLHHDAGMAPILVNIHLTEVFLGIFIGAVTFTGSVVAFGKLCGKISSKPLMLPNRHKMNLAALVVSFLLLIVFVRTDSVGLQVLALLIMTAIALVFGWHLVASIGGADMPVVVSMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVIAGGFGTDGSSTGDDQEVGEHREITAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTHMLFGDAKASVDAILKAL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "PNUC-MONOMER" null ["PnuC"] "MDFFSVQNILVHIPIGAGGYDLSWIEAVGTIAGLLCIGLASLEKISNYFFGLINVTLFGIIFFQIQLYASLLLQVFFFAANIYGWYAWSRQTSQNEAELKIRWLPLPKALSWLAVCVVSIGLMTVFINPVFAFLTRVAVMIMQALGLQVVMPELQPDAFPFWDSCMMVLSIVAMILMTRKYVENWLLWVIINVISVVIFALQGVYAMSLEYIILTFIALNGSRMWINSARERGSRALSH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "PORPHOBILSYNTH-MONOMER" "porphobilinogen synthase" ["Ncf", "HemB"] "MTDLIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCEYTSHGHCGVLCEHGVDNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQALDAAGFKDTAIMSYSTKFASSFYGPFREAAGSALKGDRKSYQMNPMNRREAIRESLLDEAQGADCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYFALDLAEKKILR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"ZN+2": 1, "MG+2": 1} 1 @@ -4048,13 +4048,13 @@ "POTD-MONOMER" "spermidine preferential ABC transporter periplasmic binding protein" [] "MKKWSRHLLAAGALALGMSAAHADDNNTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAARKLLSPEVANDKTLYPDAETIKNGEWQNDVGAASSIYEEYYQKLKAGR" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "POTE-MONOMER" "putrescine transporter PotE" ["PotE", "putrescine:ornithine antiporter", "putrescine symporter"] "MSQAKSNKMGVVQLTILTMVNMMGSGIIMLPTKLAEVGTISIISWLVTAVGSMALAWAFAKCGMFSRKSGGMGGYAEYAFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELLGASLSPVQIGLATIGVLWICTVANFGGARITGQISSITVWGVIIPVVGLCIIGWFWFSPTLYVDSWNPHHAPFFSAVGSSIAMTLWAFLGLESACANTDVVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFTPEVGKVIMALMVMSCCGSLLGWQFTIAQVFKSSSDEGYFPKIFSRVTKVDAPVQGMLTIVIIQSGLALMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAKVANFVAFVGAMYSFYALYSSGEEAMLYGSIVTFLGWTLYGLVSPRFELKNKHG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "POTF-MONOMER" "putrescine ABC transporter periplasmic binding protein" [] "MTALNKKWLSGLVAGALMAVSVGTLAAEQKTLHIYNWSDYIAPDTVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATPLVSAEVRENPGIYPPADVRAKLFTLKVQDPKIDRVRTRAWTKVKSGK" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 -"POTG-MONOMER" "putrescine ABC transporter ATP binding subunit" [] "MNDAIPRPQAKTRKALTPLLEIRNLTKSYDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPSAGQIMLDGVDLSQVPPYLRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLKERQEDGLVLDSPGLVHPLKVDADASVVDNVPVHVALRPEKIMLCEEPPANGCNFAVGEVIHIAYLGDLSVYHVRLKSGQMISAQLQNAHRHRKGLPTWGDEVRLCWEVDSCVVLTV" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 1 +"POTG-MONOMER" "putrescine ABC transporter ATP binding subunit" [] "MNDAIPRPQAKTRKALTPLLEIRNLTKSYDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPSAGQIMLDGVDLSQVPPYLRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLKERQEDGLVLDSPGLVHPLKVDADASVVDNVPVHVALRPEKIMLCEEPPANGCNFAVGEVIHIAYLGDLSVYHVRLKSGQMISAQLQNAHRHRKGLPTWGDEVRLCWEVDSCVVLTV" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 "POTH-MONOMER" "putrescine ABC transporter membrane subunit PotH" [] "MSTLEPAAQSKPPGGFKLWLSQLQMKHGRKLVIALPYIWLILLFLLPFLIVFKISLAEMARAIPPYTELMEWADGQLSITLNLGNFLQLTDDPLYFDAYLQSLQVAAISTFCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLWLGVIDQPLTILHTNLAVYIGIVYAYVPFMVLPIYTALIRIDYSLVEAALDLGARPLKTFFTVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLIVPIMWFHKHQQKSVGEHG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "POTI-MONOMER" "putrescine ABC transporter membrane subunit PotI" [] "MNNLPVVRSPWRIVILLLGFTFLYAPMLMLVIYSFNSSKLVTVWAGWSTRWYGELLRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVLVRFGRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALAHAIGWPADRGMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNPEINALATLILGAVGIVGFIAWYLMARAEKQRIRDIQRARRG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "PPENTOMUT-MONOMER" "phosphopentomutase" ["Tlr", "Drm", "ThyR", "DeoB"] "MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEADNGRKGPLNLPNLTRLGLAKAHEGSTGFIPAGMDGNAEVIGAYAWAHEMSSGKDTPSGHWEIAGVPVLFEWGYFSDHENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAPTVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDNTIVFTNFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMSLLRDDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTLAKYFGTSDMEYGKAMF" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MN+2": 1} 0 -"PPK-MONOMER" "polyphosphate kinase" ["Ppk"] "MGQEKLYIEKELSWLSFNERVLQEAADKSNPLIERMRFLGIYSNNLDEFYKVRFAELKRRIIISEEQGSNSHSRHLLGKIQSRVLKADQEFDGLYNELLLEMARNQIFLINERQLSVNQQNWLRHYFKQYLRQHITPILINPDTDLVQFLKDDYTYLAVEIIRGDTIRYALLEIPSDKVPRFVNLPPEAPRRRKPMILLDNILRYCLDDIFKGFFDYDALNAYSMKMTRDAEYDLVHEMEASLMELMSSSLKQRLTAEPVRFVYQRDMPNALVEVLREKLTISRYDSIVPGGRYHNFKDFINFPNVGKANLVNKPLPRLRHIWFDKAQFRNGFDAIRERDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHNGKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGLKIHAKLFLISRKENGEVVRYAHIGTGNFNEKTARLYTDYSLLTADARITNEVRRVFNFIENPYRPVTFDYLMVSPQNSRRLLYEMVDREIANAQQGLPSGITLKLNNLVDKGLVDRLYAASSSGVPVNLLVRGMCSLIPNLEGISDNIRAISIVDRYLEHDRVYIFENGGDKKVYLSSADWMTRNIDYRIEVATPLLDPRLKQRVLDIIDILFSDTVKARYIDKELSNRYVPRGNRRKVRAQLAIYDYIKSLEQPE" ["CCO-CYTOSOL", "CCO-OUTER-MEM"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 1 [] {"MG+2": 1} 1 +"PPK-MONOMER" "polyphosphate kinase" ["Ppk"] "MGQEKLYIEKELSWLSFNERVLQEAADKSNPLIERMRFLGIYSNNLDEFYKVRFAELKRRIIISEEQGSNSHSRHLLGKIQSRVLKADQEFDGLYNELLLEMARNQIFLINERQLSVNQQNWLRHYFKQYLRQHITPILINPDTDLVQFLKDDYTYLAVEIIRGDTIRYALLEIPSDKVPRFVNLPPEAPRRRKPMILLDNILRYCLDDIFKGFFDYDALNAYSMKMTRDAEYDLVHEMEASLMELMSSSLKQRLTAEPVRFVYQRDMPNALVEVLREKLTISRYDSIVPGGRYHNFKDFINFPNVGKANLVNKPLPRLRHIWFDKAQFRNGFDAIRERDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHNGKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGLKIHAKLFLISRKENGEVVRYAHIGTGNFNEKTARLYTDYSLLTADARITNEVRRVFNFIENPYRPVTFDYLMVSPQNSRRLLYEMVDREIANAQQGLPSGITLKLNNLVDKGLVDRLYAASSSGVPVNLLVRGMCSLIPNLEGISDNIRAISIVDRYLEHDRVYIFENGGDKKVYLSSADWMTRNIDYRIEVATPLLDPRLKQRVLDIIDILFSDTVKARYIDKELSNRYVPRGNRRKVRAQLAIYDYIKSLEQPE" ["CCO-CYTOSOL", "CCO-OUTER-MEM"] ["CCO-PM-BAC-NEG"] 1 [] {"MG+2": 1} 1 "PPPGPPHYDRO-MONOMER" "guanosine-5'-triphosphate,3'-diphosphate phosphatase" ["GppA", "Gpp"] "MGSTSSLYAAIDLGSNSFHMLVVREVAGSIQTLTRIKRKVRLAAGLNSENALSNEAMERGWQCLRLFAERLQDIPPSQIRVVATATLRLAVNAGDFIAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQTTSLFSLSMGCVTWLERYFADRNLGQENFDAAEKAAREVLRPVADELRYHGWKVCVGASGTVQALQEIMMAQGMDERITLEKLQQLKQRAIHCGRLEELEIDGLTLERALVFPSGLAILIAIFTELNIQCMTLAGGALREGLVYGMLHLAVEQDIRSRTLRNIQRRFMIDIDQAQRVAKVAANFFDQVENEWHLEAISRDLLISACQLHEIGLSVDFKQAPQHAAYLVRNLDLPGFTPAQKKLLATLLLNQTNPVDLSSLHQQNAVPPRVAEQLCRLLRLAIIFASRRRDDLVPEMTLQANHELLTLTLPQGWLTQHPLGKEIIAQESQWQSYVHWPLEVH" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"PPX-MONOMER" "exopolyphosphatase" ["Ppx"] "MPIHDKSPRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQGFSPASVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPILVESRRMGCVSFAQLYFPGGVINKENFQRARMAAAQKLETLTWQFRIQGWNVAMGASGTIKAAHEVLMEMGEKDGIITPERLEKLVKEVLRHRNFASLSLPGLSEERKTVFVPGLAILCGVFDALAIRELRLSDGALREGVLYEMEGRFRHQDVRSRTASSLANQYHIDSEQARRVLDTTMQMYEQWREQQPKLAHPQLEALLRWAAMLHEVGLNINHSGLHRHSAYILQNSDLPGFNQEQQLMMATLVRYHRKAIKLDDLPRFTLFKKKQFLPLIQLLRLGVLLNNQRQATTTPPTLTLITDDSHWTLRFPHDWFSQNALVLLDLEKEQEYWEGVAGWRLKIEEESTPEIAA" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 1 [] {} 1 +"PPX-MONOMER" "exopolyphosphatase" ["Ppx"] "MPIHDKSPRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQGFSPASVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPILVESRRMGCVSFAQLYFPGGVINKENFQRARMAAAQKLETLTWQFRIQGWNVAMGASGTIKAAHEVLMEMGEKDGIITPERLEKLVKEVLRHRNFASLSLPGLSEERKTVFVPGLAILCGVFDALAIRELRLSDGALREGVLYEMEGRFRHQDVRSRTASSLANQYHIDSEQARRVLDTTMQMYEQWREQQPKLAHPQLEALLRWAAMLHEVGLNINHSGLHRHSAYILQNSDLPGFNQEQQLMMATLVRYHRKAIKLDDLPRFTLFKKKQFLPLIQLLRLGVLLNNQRQATTTPPTLTLITDDSHWTLRFPHDWFSQNALVLLDLEKEQEYWEGVAGWRLKIEEESTPEIAA" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 1 [] {} 1 "PRAI-IGPS" "fused indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase" ["TrpC", "TrpF"] "MMQTVLAKIVADKAIWVEARKQQQPLASFQNEVQPSTRHFYDALQGARTAFILECKKASPSKGVIRDDFDPARIAAIYKHYASAISVLTDEKYFQGSFNFLPIVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHFANGFLIGSALMAHDDLHAAVRRVLLGENKVCGLTRGQDAKAAYDAGAIYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVLSLAAVQLHGNEEQLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQRFDWSLLNGQSLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAVESQPGIKDARLLASVFQTLRAY" [] ["CCO-CYTOSOL"] 0 [] {} 0 "PRIBFAICARPISOM-MONOMER" null ["HisA"] "MIIPALDLIDGTVVRLHQGDYGKQRDYGNDPLPRLQDYAAQGAEVLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRSEEDVAALLEAGVARVVVGSTAVKSQDMVKGWFERFGADALVLALDVRIDEQGNKQVAVSGWQENSGVSLEQLVETYLPVGLKHVLCTDISRDGTLAGSNVSLYEEVCARYPQVAFQSSGGIGDIDDVAALRGTGVRGVIVGRALLEGKFTVKEAIACWQNA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "PROP-MONOMER" "osmolyte:H+ symporter ProP" ["ProP proline/betaine MFS transporter", "ProP", "proline permease II", "proline porter II"] "MLKRKKVKPITLRDVTIIDDGKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYDTIGIWAPILLLICKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKYWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVLLGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESSQNLMMPAYYLMVVAVVGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHYDNIEQKIDDIDHEIADLQAKRTRLVQQHPRIDE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 @@ -4064,16 +4064,16 @@ "PROTEIN-NRI" "DNA-binding transcriptional dual regulator NtrC" ["GlnT", "GlnG", "NtrC", "NtrC response regulator"] "MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "PROTEIN-NRII" "protein histidine kinase NtrB" ["GlnL", "GlnR", "NtrB"] "MATGTQPDAGQILNSLINSILLIDDNLAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFSLNIELMQESLEAGQGFTDNEVTLVIDGRSHILSVTAQRMPDGMILLEMAPMDNQRRLSQEQLQHAQQVAARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPSLLEYTKVIIEQADRLRNLVDRLLGPQLPGTRVTESIHKVAERVVTLVSMELPDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPGHTEFSVYLPIRK" [] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 1 "PROTEIN-PII" "nitrogen regulatory protein PII-1" ["GlnB", "[protein PII]", "unmodified PII", "PII", "regulatory protein P-II, regulation of nitrogen metabolism and fatty acid biosynthesis"] "MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVDFLPKVKIEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAAI" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"PROTEIN-PII2" "nitrogen regulatory protein PII-2" ["YbaI", "GlnK", "PII-2", "nitrogen regulatory protein GlnK"] "MKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAAL" [] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"PROTEIN-PII2" "nitrogen regulatory protein PII-2" ["YbaI", "GlnK", "PII-2", "nitrogen regulatory protein GlnK"] "MKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAAL" [] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 1 "PROTOHEME-FERROCHELAT-MONOMER" null ["VisA", "PopA", "HemH"] "MRQTKTGILLANLGTPDAPTPEAVKRYLKQFLSDRRVVDTSRLLWWPLLRGVILPLRSPRVAKLYASVWMEGGSPLMVYSRQQQQALAQRLPEMPVALGMSYGSPSLESAVDELLAEHVDHIVVLPLYPQFSCSTVGAVWDELARILARKRSIPGISFIRDYADNHDYINALANSVRASFAKHGEPDLLLLSYHGIPQRYADEGDDYPQRCRTTTRELASALGMAPEKVMMTFQSRFGREPWLMPYTDETLKMLGEKGVGHIQVMCPGFAADCLETLEEIAEQNREVFLGAGGKKYEYIPALNATPEHIEMMANLVAAYR" [] ["CCO-CYTOSOL"] 0 [] {"FE+2": 1} 0 -"PROTOPORGENOXI-MONOMER" "protoporphyrinogen oxidase" ["YihB", "HemG"] "MKTLILFSTRDGQTREIASYLASELKELGIQADVANVHRIEEPQWENYDRVVIGASIRYGHYHSAFQEFVKKHATRLNSMPSAFYSVNLVARKPEKRTPQTNSYARKFLMNSQWRPDRCAVIAGALRYPRYRWYDRFMIKLIMKMSGGETDTRKEVVYTDWEQVANFAREIAHLTDKPTLK" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL", "CCO-MEMBRANE"] 0 [] {} 1 +"PROTOPORGENOXI-MONOMER" "protoporphyrinogen oxidase" ["YihB", "HemG"] "MKTLILFSTRDGQTREIASYLASELKELGIQADVANVHRIEEPQWENYDRVVIGASIRYGHYHSAFQEFVKKHATRLNSMPSAFYSVNLVARKPEKRTPQTNSYARKFLMNSQWRPDRCAVIAGALRYPRYRWYDRFMIKLIMKMSGGETDTRKEVVYTDWEQVANFAREIAHLTDKPTLK" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 "PROV-MONOMER" "glycine betaine ABC transporter ATP binding subunit ProV" ["ProU", "OsrA", "ProV"] "MAIKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQQGLDAALIDAPLAVDAQTPLSELLSHVGQAPCAVPVVDEDQQYVGIISKGMLLRALDREGVNNG" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 "PROW-MONOMER" "glycine betaine ABC transporter membrane subunit ProW" ["OsrA", "ProU", "ProW"] "MADQNNPWDTTPAADSAAQSADAWGTPTTAPTDGGGADWLTSTPAPNVEHFNILDPFHKTLIPLDSWVTEGIDWVVTHFRPVFQGVRVPVDYILNGFQQLLLGMPAPVAIIVFALIAWQISGVGMGVATLVSLIAIGAIGAWSQAMVTLALVLTALLFCIVIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVGRDSRSRGNRRWYTTGPVGLLTRPFIK" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "PROX-MONOMER" "glycine betaine ABC transporter periplasmic binding protein ProX" ["OsrA", "ProU", "ProX", "glycine betaine binding protein (GBBP)"] "MRHSVLFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALEKLGYTVNKPSEVDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTADQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELTNTVTHNQGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTKLPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDIQGHVDGWIKAHQQQFDGWVNEALAAQK" ["CCO-MEMBRANE", "CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "PROY-MONOMER" "putative transporter ProY" ["YajM", "ProY", "ProY cryptic proline APC transporter"] "MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGIAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLLFIIGLIGYHPDTRISLYVGFAWIVVLLIGWMFKRRHDRQLAENQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "PRPPAMIDOTRANS-MONOMER" "amidophosphoribosyltransferase" ["Ade", "PurC", "PurF"] "MCGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAIYITEEGQLFTRQCADNPVSNPCLFEYVYFARPDSFIDKISVYSARVNMGTKLGEKIAREWEDLDIDVVIPIPETSCDIALEIARILGKPYRQGFVKNRYVGRTFIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYLASAAPEIRFPNVYGIDMPSATELIAHGREVDEIRQIIGADGLIFQDLNDLIDAVRAENPDIQQFECSVFNGVYVTKDVDQGYLDFLDTLRNDDAKAVQRQNEVENLEMHNEG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MG+2": 1} 1 "PRPPSYN-MONOMER" "ribose-phosphate diphosphokinase" ["DnaR", "Prs", "PrsA"] "MPDMKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAPTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQLNLDNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVLVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAANNLRNSVIDEVVVCDTIPLSDEIKSLPNVRTLTLSGMLAEAIRRISNEESISAMFEH" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MG+2": 2} 1 -"PSD-MONOMER" "phosphatidylserine decarboxylase proenzyme" ["Psd", "phosphatidylserine decarboxylase, π subunit"] "MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTASYRTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSVTKIGQPLAVSTETFVTPDAEPAPLPAEEIEAEHDASPLVDDKKDQV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"PSD-MONOMER" "phosphatidylserine decarboxylase proenzyme" ["Psd", "phosphatidylserine decarboxylase, π subunit"] "MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTASYRTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSVTKIGQPLAVSTETFVTPDAEPAPLPAEEIEAEHDASPLVDDKKDQV" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "PSERPHOSPHA-MONOMER" null ["SerB"] "MPNITWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYGRGLDKQRLTQYQSKLGAAMVIVAAWCVEDYQVIRLAGSLTARATRLAHEAQLDVAPLGKIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEMVAEVTERAMRGELDFTASLRSRVATLKGADANILQQVRENLPLMPGLTQLVLKLETLGWKVAIASGGFTFFAEYLRDKLRLTAVVANELEIMDGKFTGNVIGDIVDAQYKAKTLTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAYHAKPKVNEKAEVTIRHADLMGVFCILSGSLNQK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "PSERTRANSAM-MONOMER" "phosphoserine/phosphohydroxythreonine aminotransferase" ["SerC", "PdxF", "PdxC"] "MAQIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFGADVVVAADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRHG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "PSTA-MONOMER" "phosphate ABC transporter membrane subunit PstA" ["PhoT"] "MAMVEMQTTAALAESRRKMQARRRLKNRIALTLSMATMAFGLFWLIWILMSTITRGIDGMSLALFTEMTPPPNTEGGGLANALAGSGLLILWATVFGTPLGIMAGIYLAEYGRKSWLAEVIRFINDILLSAPSIVVGLFVYTIVVAQMEHFSGWAGVIALALLQVPIVIRTTENMLKLVPYSLREAAYALGTPKWKMISAITLKASVSGIMTGILLAIARIAGETAPLLFTALSNQFWSTDMMQPIANLPVTIFKFAMSPFAEWQQLAWAGVLIITLCVLLLNILARVVFAKNKHG" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 @@ -4089,23 +4089,23 @@ "PUTP-MONOMER" "proline:Na+ symporter" ["PutC", "PutP", "PPI", "proline permease I", "PutP proline SSS transporter"] "MAISTPMLVTFCVYIFGMILIGFIAWRSTKNFDDYILGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIGGFLAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEVIKQKSIENVDMLKGLNFVAIISLMGWGLGYFGQPHILARFMAADSHHSIVHARRISMTWMILCLAGAVAVGFFGIAYFNDHPALAGAVNQNAERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSAITEDLYKAFLRKHASQKELVWVGRVMVLVVALVAIALAANPENRVLGLVSYAWAGFGAAFGPVVLFSVMWSRMTRNGALAGMIIGALTVIVWKQFGWLGLYEIIPGFIFGSIGIVVFSLLGKAPSAAMQKRFAEADAHYHSAPPSRLQES" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "PYRROLINECARBREDUCT-MONOMER" "pyrroline-5-carboxylate reductase" ["ProC"] "MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAALHDQFGINAAESAQEVAQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTLDQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVIAEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLSKS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "PYRUVFORMLY-MONOMER" "pyruvate formate-lyase" ["Pfl", "PflB"] "MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATEATTTLWDKVMEGVKLENRTHAPVDFDTAVASTITSHDAGYINKQLEKIVGLQTEAPLKRALIPFGGIKMIEGSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLTGLPDAYGRGRIIGDYRRVALYGIDYLMKDKLAQFTSLQADLENGVNLEQTIRLREEIAEQHRALGQMKEMAAKYGYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSTFLDVYIERDLKAGKITEQEAQEMVDHLVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNTLYTMGPSPEPNMTILWSEKLPLNFKKFAAKVSIDTSSLQYENDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDVLNYDEVMERMDHFMDWLAKQYITALNIIHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAKVKPIRDEDGLAIDFEIEGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIPTQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVRKTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQSM" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 -"PYRUVOXID-MONOMER" "pyruvate oxidase" ["PoxB"] "MKQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGDVALKPAPEGATMHWYHAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAFYPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVEEKADRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDEALQRAFSIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELAKTNWLR" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 +"PYRUVOXID-MONOMER" "pyruvate oxidase" ["PoxB"] "MKQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGDVALKPAPEGATMHWYHAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAFYPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVEEKADRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDEALQRAFSIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELAKTNWLR" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "QOR-MONOMER" "putative quinone oxidoreductase 1" ["Hzc", "Hcz", "Qor", "QorA"] "MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLIP" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "QUINOLINATE-SYNTHA-MONOMER" "quinolinate synthase" ["NicA", "NadA"] "MSVMFDPDTAIYPFPPKPTPLSIDEKAYYREKIKRLLKERNAVMVAHYYTDPEIQQLAEETGGCISDSLEMARFGAKHPASTLLVAGVRFMGETAKILSPEKTILMPTLQAECSLDLGCPVEEFNAFCDAHPDRTVVVYANTSAAVKARADWVVTSSIAVELIDHLDSLGEKIIWAPDKHLGRYVQKQTGGDILCWQGACIVHDEFKTQALTRLQEEYPDAAILVHPESPQAIVDMADAVGSTSQLIAAAKTLPHQRLIVATDRGIFYKMQQAVPDKELLEAPTAGEGATCRSCAHCPWMAMNGLQAIAEALEQEGSNHEVHVDERLRERALVPLNRMLDFAATLRG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 1 "QUINOPRIBOTRANS-MONOMER" "quinolinate phosphoribosyltransferase (decarboxylating)" ["NadC"] "MPPRRYNPDTRRDELLERINLDIPGAVAQALREDLGGTVDANNDITAKLLPENSRSHATVITRENGVFCGKRWVEEVFIQLAGDDVTIIWHVDDGDVINANQSLFELEGPSRVLLTGERTALNFVQTLSGVASKVRHYVELLEGTNTQLLDTRKTLPGLRSALKYAVLCGGGANHRLGLSDAFLIKENHIIASGSVRQAVEKASWLHPDAPVEVEVENLEELDEALKAGADIIMLDNFETEQMREAVKRTNGKALLEVSGNVTDKTLREFAETGVDFISVGALTKHVQALDLSMRFR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 -"RBSA-MONOMER" "ribose ABC transporter ATP binding subunit" ["RbsP", "RbsT"] "MEALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGTLLWLGKETTFTGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGKIDWKTMYAEADKLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVGRKLEDQYPHLDKAPGDIRLKVDNLCGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNVKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDRIIVMHEGHLSGEFTREQATQEVLMAAAVGKLNRVNQE" ["CCO-MEMBRANE"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"RBSA-MONOMER" "ribose ABC transporter ATP binding subunit" ["RbsP", "RbsT"] "MEALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGTLLWLGKETTFTGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGKIDWKTMYAEADKLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVGRKLEDQYPHLDKAPGDIRLKVDNLCGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNVKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDRIIVMHEGHLSGEFTREQATQEVLMAAAVGKLNRVNQE" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "RBSB-MONOMER" "ribose ABC transporter periplasmic binding protein" ["RbsP", "PrlB"] "MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ" ["CCO-MEMBRANE", "CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "RBSC-MONOMER" "ribose ABC transporter membrane subunit" ["RbsT", "RbsP"] "MTTQTVSGRRYFTKAWLMEQKSLIALLVLIAIVSTLSPNFFTINNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTENADLFGWFGIGRPLGVPTPVWIMGIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLASLAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "RCSB-MONOMER" "DNA-binding transcriptional activator RcsB" ["RcsB response regulator", "RcsB"] "MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIALLNYLSSVTLSPADKD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"RCSC-MONOMER" "histidine kinase RcsC" [] "MKYLASFRTTLKASRYMFRALALVLWLLIAFSSVFYIVNALHQRESEIRQEFNLSSDQAQRFIQRTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPLFADSDCSAMSNTWRGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMPVERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLGVEQTIRMENFFLPGTLPMGVTILDENGHTLISLTGPESKIKGDPRWMQERSWFGYTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQRLTQIICGQQVNFVDVLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIPLYGAQYPQKKGVEGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQEPTPEDVLITDEVVSKKWQGRAVVTFCRRHIGIPLEKAPGEWVHSVAAPHELPALLARIYLIEMESDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVRKSRDS" ["CCO-PERI-BAC", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"RCSF-MONOMER" "sensor lipoprotein RcsF" ["RcsF"] "MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNITAK" ["CCO-PERI-BAC", "CCO-OUTER-MEM"] ["CCO-MEMBRANE", "CCO-OUTER-MEM"] 0 [] {} 0 +"RCSC-MONOMER" "histidine kinase RcsC" [] "MKYLASFRTTLKASRYMFRALALVLWLLIAFSSVFYIVNALHQRESEIRQEFNLSSDQAQRFIQRTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPLFADSDCSAMSNTWRGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMPVERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLGVEQTIRMENFFLPGTLPMGVTILDENGHTLISLTGPESKIKGDPRWMQERSWFGYTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQRLTQIICGQQVNFVDVLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIPLYGAQYPQKKGVEGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQEPTPEDVLITDEVVSKKWQGRAVVTFCRRHIGIPLEKAPGEWVHSVAAPHELPALLARIYLIEMESDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVRKSRDS" ["CCO-PERI-BAC", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"RCSF-MONOMER" "sensor lipoprotein RcsF" ["RcsF"] "MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNITAK" ["CCO-PERI-BAC", "CCO-OUTER-MEM"] ["CCO-OUTER-MEM"] 0 [] {} 0 "RED-GLUTAREDOXIN" "reduced glutaredoxin 1" ["Grx", "GrxA", "glutaredoxin 1", "Grx1"] "MQTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYTDFAAWVKENLDA" [] ["CCO-CYTOSOL"] 0 [] {} 0 -"RED-THIOREDOXIN-MONOMER" "reduced thioredoxin 1" ["DasC", "TsnC", "FipA", "TrxA", "thioredoxin(SH)2", "TRX1"] "MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 -"RED-THIOREDOXIN2-MONOMER" "reduced thioredoxin 2" ["YfiG", "TrxC", "Trx2"] "MNTVCTHCQAINRIPDDRIEDAAKCGRCGHDLFDGEVINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 -"RELA-MONOMER" "GDP/GTP pyrophosphokinase" ["RelA", "stringent factor", "ppGpp synthetase I", "PSI", "ppGpp synthase I", "(p)ppGpp synthetase I"] "MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 +"RED-THIOREDOXIN-MONOMER" "thioredoxin 1" ["DasC", "TsnC", "FipA", "TrxA", "thioredoxin(SH)2", "TRX1"] "MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 +"RED-THIOREDOXIN2-MONOMER" "thioredoxin 2" ["YfiG", "TrxC", "Trx2"] "MNTVCTHCQAINRIPDDRIEDAAKCGRCGHDLFDGEVINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 +"RELA-MONOMER" "GDP/GTP pyrophosphokinase" ["RelA", "stringent factor", "ppGpp synthetase I", "PSI", "ppGpp synthase I", "(p)ppGpp synthetase I"] "MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "RFBX-MONOMER" "polyisoprenol-linked O16-antigen repeat unit flippase" ["Wzx", "WzxB", "RfbX"] "MNTNKLSLRRNVIYLAVVQGSNYLLPLLTFPYLVRTLGPENFGIFGFCQATMLYMIMFVEYGFNLTATQSIAKAADSKDKVTSIFWAVIFSKIVLIVITLIFLTSMTLLVPEYNKHAVIIWSFVPALVGNLIYPIWLFQGKEKMKWLTLSSILSRLAIIPLTFIFVNTKSDIAIAGFIQSSANLVAGIIALAIVVHEGWIGKVTLSLHNVRRSLADGFHVFISTSAISLYSTGIVIILGFISGPTSVGNFNAANTIRNALQGLLNPITQAIYPRISSTLVLNRVKGVILIKKSLTCLSLIGGAFSLILLLGASILVKISIGPGYDNAVIVLMIISPLPFLISLSNVYGIQVMLTHNYKKEFSKILIAAGLLSLLLIFPLTTLFKEIGAAITLLATECLVTSLMLMFVRNNKLLVC" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "RFFTRANS-MONOMER" "dTDP-4-dehydro-6-deoxy-D-glucose transaminase" ["Rff", "YifI", "RffA", "FcnA", "WecE"] "MIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRFGSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRPDTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLALWQNYYDALAPLAKAGRIELPSIPDGCVQNAHMFYIKLRDIDDRSALINFLKEAEIMAVFHYIPLHGCPAGEHFGEFHGEDRYTTKESERLLRLPLFYNLSPVNQRTVIATLLNYFS" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"RHAMNISOM-MONOMER" "L-rhamnose isomerase" ["RhaA"] "MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRRG" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1, "MN+2": 1} 1 +"RHAMNISOM-MONOMER" "L-rhamnose isomerase" ["RhaA"] "MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRRG" [] ["CCO-CYTOSOL"] 0 [] {} 1 "RHAMNULOKIN-MONOMER" null ["RhaB"] "MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCEEGIRIDSIGIDTWGVDFVLLDQQGQRVGLPVAYRDSRTNGLMAQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLMPDYFSYRLTGKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTASAVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGLWLLQRVLQEQQINDLPALISATQALPACRFIINPNDDRFINPETMCSEIQAACRETAQPIPESDAELARCIFDSLALLYADVLHELAQLRGEDFSQLHIVGGGCQNTLLNQLCADACGIRVIAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQIHSTRQTKELCA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "RHAMNULPALDOL-MONOMER" "rhamnulose-1-phosphate aldolase" ["RhaD"] "MQNITQSWFVQGMIKATTDAWLKGWDERNGGNLTLRLDDADIAPYHDNFHQQPRYIPLSQPMPLLANTPFIVTGSGKFFRNVQLDPAANLGIVKVDSDGAGYHILWGLTNEAVPTSELPAHFLSHCERIKATNGKDRVIMHCHATNLIALTYVLENDTAVFTRQLWEGSTECLVVFPDGVGILPWMVPGTDEIGQATAQEMQKHSLVLWPFHGVFGSGPTLDETFGLIDTAEKSAQVLVKVYSMGGMKQTISREELIALGKRFGVTPLASALAL" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 "RHAT-MONOMER" "rhamnose/lyxose:H+ symporter" ["RhaT"] "MSNAITMGIFWHLIGAASAACFYAPFKKVKKWSWETMWSVGGIVSWIILPWAISALLLPNFWAYYSSFSLSTRLPVFLFGAMWGIGNINYGLTMRYLGMSMGIGIAIGITLIVGTLMTPIINGNFDVLISTEGGRMTLLGVLVALIGVGIVTRAGQLKERKMGIKAEEFNLKKGLVLAVMCGIFSAGMSFAMNAAKPMHEAAAALGVDPLYVALPSYVVIMGGGAIINLGFCFIRLAKVKDLSLKADFSLAKSLIIHNVLLSTLGGLMWYLQFFFYAWGHARIPAQYDYISWMLHMSFYVLCGGIVGLVLKEWNNAGRRPVTVLSLGCVVIIVAANIVGIGMAN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -4123,7 +4123,7 @@ "RIBULP3EPIM-MONOMER" null ["Dod", "YhfD", "Rpe"] "MKQYLIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASEHVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSELAKVSHE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "RIBULPEPIM-MONOMER" "L-ribulose-5-phosphate 4-epimerase AraD" ["AraD"] "MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVSIETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 "RNTRACTIV-MONOMER" "anaerobic ribonucleoside-triphosphate reductase activating protein" ["YjgE", "NrdG"] "MNYHQYYPVDIVNGPGTRCTLFVSGCVHECPGCYNKSTWRVNSGQPFTKAMEDQIINDLNDTRIKRQGISLSGGDPLHPQNVPDILKLVQRIRAECPGKDIWVWTGYKLDELNAAQMQVVDLINVLVDGKFVQDLKDPSLIWRGSSNQVVHHLR" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 1 -"RPOA-MONOMER" "D-alanyl-D-alanine carboxypeptidase DacD" ["YeeC", "PhsE", "DacD", "PBP6b", "penicillin-binding protein 6b", "murein D,D-carboxypeptidase DacD"] "MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEIELYDRDKQVAHWPLVTLESVGEGSMFSRLSDYFHHKA" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"RPOA-MONOMER" "D-alanyl-D-alanine carboxypeptidase DacD" ["YeeC", "PhsE", "DacD", "PBP6b", "penicillin-binding protein 6b", "murein D,D-carboxypeptidase DacD"] "MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEIELYDRDKQVAHWPLVTLESVGEGSMFSRLSDYFHHKA" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "RPOB-MONOMER" "RNA polymerase subunit β" ["Stl", "Stv", "TabD", "SdgB", "Ron", "Rif", "NitB", "GroN", "FtsR", "RpoB"] "MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "RPOC-MONOMER" "RNA polymerase subunit β'" ["TabB", "RpoC"] "MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAGLGGSDNE" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1, "ZN+2": 2} 1 "RPOD-MONOMER" "RNA polymerase sigma factor RpoD" ["Alt", "RpoD", "sigma D factor", "sigma 70 factor", "σ70", "RNA polymerase, sigma 70 (sigma D) factor"] "MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -4138,21 +4138,21 @@ "SAPA-MONOMER" "putative periplasmic binding protein SapA" [] "MRQVLSSLLVIAGLVSGQAIAAPESPPHADIRDSGFVYCVSGQVNTFNPSKASSGLIVDTLAAQFYDRLLDVDPYTYRLMPELAESWEVLDNGATYRFHLRRDVPFQKTDWFTPTRKMNADDVVFTFQRIFDRNNPWHNVNGSNFPYFDSLQFADNVKSVRKLDNHTVEFRLAQPDASFLWHLATHYASVMSAEYARKLEKEDRQEQLDRQPVGTGPYQLSEYRAGQFIRLQRHDDFWRGKPLMPQVVVDLGSGGTGRLSKLLTGECDVLAWPAASQLSILRDDPRLRLTLRPGMNVAYLAFNTAKPPLNNPAVRHALALAINNQRLMQSIYYGTAETAASILPRASWAYDNEAKITEYNPAKSREQLKSLGLENLTLKLWVPTRSQAWNPSPLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMSHDLTLSGWATDSNDPDSFFRPLLSCAAIHSQTNLAHWCDPKFDSVLRKALSSQQLAARIEAYDEAQSILAQELPILPLASSLRLQAYRYDIKGLVLSPFGNASFAGVYREKQDEVKKP" [] ["CCO-PERI-BAC"] 0 [] {} 0 "SAPB-MONOMER" "putrescine ABC exporter membrane subunit SapB" [] "MIIFTLRRILLLIVTLFLLTFVGFSLSYFTPHAPLQGASLWNAWVFWFNGLIHWDFGVSSINGQPIAEQLKEVFPATMELCILAFGFALIVGIPVGMIAGITRHKWQDNLINAIALLGFSIPVFWLALLLTLFCSLTLGWLPVSGRFDLLYEVKPITGFALIDAWLSDSPWRDEMIMSAIRHMILPVITLSVAPTTEVIRLMRISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVCGSLVIIVNVISDILGAMANPLKHKEWYALR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "SAPC-MONOMER" "putrescine ABC exporter membrane protein SapC" [] "MPYDSVYSEKRPPGTLRTAWRKFYSDASAMVGLYGCAGLAVLCIFGGWFAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAATICGLVLGTFAGATHGLRSAVLNHILDTLLAIPSLLLAIIVVAFAGPSLSHAMFAVWLALLPRMVRSIYSMVHDELEKEYVIAARLDGASTLNILWFAVMPNITAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMISVLLVNLLGDGVRRAIIAGVE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"SAPD-MONOMER" "putrescine ABC exporter ATP binding protein SapD" ["TrkE"] "MPLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEQLPIGCRLGPRCPYAQRECIVTPRLTGAKNHLYACHFPLNMEKE" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"SAPF-MONOMER" "putrescine ABC exporter ATP binding protein SapF" [] "MIETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSFRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQRRKQIIETMRMVGLLPDHVSYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHISDQVLVMHQGEVVERGSTADVLASPLHELTKRLIAGHFGEALTADAWRKDR" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 1 +"SAPD-MONOMER" "putrescine ABC exporter ATP binding protein SapD" ["TrkE"] "MPLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEQLPIGCRLGPRCPYAQRECIVTPRLTGAKNHLYACHFPLNMEKE" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"SAPF-MONOMER" "putrescine ABC exporter ATP binding protein SapF" [] "MIETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSFRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQRRKQIIETMRMVGLLPDHVSYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHISDQVLVMHQGEVVERGSTADVLASPLHELTKRLIAGHFGEALTADAWRKDR" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 "SARCOX-MONOMER" null ["SolA"] "MKYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKYVPLVLRAQTLWDELSRHNEEDPIFVRSGVINLGPADSTFLANVAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADGEYQAKKAIVCAGTWVKDLLPELPVQPVRKVFAWYQADGRYSVKNKFPAFTGELPNGDQYYGFPAENDALKIGKHNGGQVIHSADERVPFAEVASDGSEAFPFLRNVLPGIGCCLYGAACTYDNSPDEDFIIDTLPGHDNTLLITGLSGHGFKFASVLGEIAADFAQDKKSDFDLTPFRLSRFQ" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "SBMA-MONOMER" "peptide antibiotic/peptide nucleic acid transporter" ["SbmA"] "MFKSFFPKPGTFFLSAFVWALIAVIFWQAGGGDWVARITGASGQIPISAARFWSLDFLIFYAYYIVCVGLFALFWFIYSPHRWQYWSILGTALIIFVTWFLVEVGVAVNAWYAPFYDLIQTALSSPHKVTIEQFYREVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMANWQQLRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLIAFLPVLVTLSAHVPELPIIGHIPYGLVIAAIVWSLMGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDATRATPPTVRELFSAVRKNYFRLYFHYMYFNIARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGAFQYLINSWTTLVELMSIYKRLRSFEHELDGDKIQEVTHTLS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "SBP-MONOMER" "sulfate/thiosulfate ABC transporter periplasmic binding protein Sbp" [] "MNKWGVGLTFLLAATSVMAKDIQLLNVSYDPTRELYEQYNKAFSAHWKQQTGDNVVIRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKEWIKRLPDNSAPYTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAWGYALHHNNNDQAKAQDFVRALYKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLAANELGKDKFEIVTPSESILAEPTVSVVDKVVEKKGTKEVAEAYLKYLYSPEGQEIAAKNYYRPRDAEVAKKYENAFPKLKLFTIDEEFGGWTKAQKEHFANGGTFDQISKR" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "SDAC-MONOMER" null ["DcrA", "SdaC", "L-serine transporter"] "METTQTSTIASKDSRSAWRKTDTMWMLGLYGTAIGAGVLFLPINAGVGGMIPLIIMAILAFPMTFFAHRGLTRFVLSGKNPGEDITEVVEEHFGIGAGKLITLLYFFAIYPILLVYSVAITNTVESFMSHQLGMTPPPRAILSLILIVGMMTIVRFGEQMIVKAMSILVFPFVGVLMLLALYLIPQWNGAALETLSLDTASATGNGLWMTLWLAIPVMVFSFNHSPIISSFAVAKREEYGDMAEQKCSKILAFAHIMMVLTVMFFVFSCVLSLTPADLAAAKEQNISILSYLANHFNAPVIAWMAPIIAIIAITKSFLGHYLGAREGFNGMVIKSLRGKGKSIEINKLNRITALFMLVTTWIVATLNPSILGMIETLGGPIIAMILFLMPMYAIQKVPAMRKYSGHISNVFVVVMGLIAISAIFYSLFS" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"SDH-FE-S" "succinate:quinone oxidoreductase, iron-sulfur cluster binding protein" ["DhsB", "SdhB"] "MRLEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {"CPD-6": 1, "CPD-7": 1, "3FE-4S": 1} 1 -"SDH-FLAVO" "succinate:quinone oxidoreductase, FAD binding protein" ["DhsA", "SdhA"] "MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESMTRRSVNMEPKLRPAFPPKIRTY" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"SDH-FE-S" "succinate:quinone oxidoreductase, [Fe-S] cluster binding protein" ["DhsB", "SdhB", "succinate:quinone oxidoreductase, iron-sulfur cluster binding protein"] "MRLEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA" [] ["CCO-PM-BAC-NEG"] 0 [] {"CPD-6": 1, "CPD-7": 1, "3FE-4S": 1} 1 +"SDH-FLAVO" "succinate:quinone oxidoreductase, FAD binding protein" ["DhsA", "SdhA"] "MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESMTRRSVNMEPKLRPAFPPKIRTY" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "SDH-MEMB1" "succinate:quinone oxidoreductase, membrane protein SdhC" ["DhsC", "CybA", "SdhC", "large subunit of cytochrome b556", "CybL"] "MIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLVW" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"PROTOHEME": 1} 1 "SDH-MEMB2" "succinate:quinone oxidoreductase, membrane protein SdhD" ["DhsD", "SdhD", "CybS", "small subunit of cytochrome b556"] "MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"PROTOHEME": 1} 1 "SECA" "protein translocation ATPase" ["Pea", "Azi", "PrlD", "SecA"] "MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEELEQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQCHGRLQ" ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"ZN+2": 1} 1 "SECB" "protein export chaperone SecB" ["SecB"] "MSEQNNTEMTFQIQRIYTKDISFEAPNAPHVFQKDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGTEEHQDA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"SECD" "Sec translocon accessory complex subunit SecD" ["SecD"] "MLNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARGVAASEQTLIQVQKTLQEEKITAKSVALEEGAILARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKARDEAIAYLSKRHPDLVISSQGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"SECD" "Sec translocon accessory complex subunit SecD" ["SecD"] "MLNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARGVAASEQTLIQVQKTLQEEKITAKSVALEEGAILARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKARDEAIAYLSKRHPDLVISSQGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "SECE" "Sec translocon subunit SecE" ["SecE", "MbrC", "PrlG"] "MSANTEAQGSGRGLEAMKWVVVVALLLVAIVGNYLYRDIMLPLRALAVVILIAAAGGVALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFITGLRF" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"SECF" "Sec translocon accessory complex subunit SecF" ["SecF"] "MAQEYTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEKPAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQNAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKREHMLQQKVEKEGADQPSILP" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"SECF" "Sec translocon accessory complex subunit SecF" ["SecF"] "MAQEYTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEKPAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQNAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKREHMLQQKVEKEGADQPSILP" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "SECG" "Sec translocon subunit SecG" ["SecG", "PrlH", "p12"] "MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLATLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPAKPTSDIPN" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "SECY" "Sec translocon subunit SecY" ["SecY", "PrlA"] "MAKQPGLDFQSAKGGLGELKRRLLFVIGALIVFRIGSFIPIPGIDAAVLAKLLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQLLTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFLVLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPLYVLLYASAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMRDAMKVPFYFGGTSLLIVVVVIMDFMAQVQTLMMSSQYESALKKANLKGYGR" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "SERINE-O-ACETTRAN-MONOMER" "serine acetyltransferase" ["CysE"] "MSCEELEIVWNNIKAEARTLADCEPMLASFYHATLLKHENLGSALSYMLANKLSSPIMPAIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIVGKPDSDKPSMDMDQHFNGINHTFEYGDGI" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -4172,7 +4172,7 @@ "SPED-MONOMER" "S-adenosylmethionine decarboxylase proenzyme" ["SpeD"] "MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYNANRLTEILSETCSIIGANILNIARQDYEPQGASVTILVSEEPVDPKLIDKTEHPGPLPETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDIVTIDYRVRGFTRDINGMKHFIDHEINSIQNFMSDDMKALYDMVDVNVYQENIFHTKMLLKEFDLKHYMFHTKPEDLTDSERQEITAALWKEMREIYYGRNMPAV" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "SPERMACTRAN-MONOMER" "spermidine N-acetyltransferase" ["SpeG"] "MPSAHSVKLRPLEREDLRYVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVECDGEKAGLVELVEINHVHRRAEFQIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFSVEGELMHEFFINGQYRNAIRMCIFQHQYLAEHKTPGQTLLKPTAQ" [] ["CCO-CYTOSOL"] 1 [] {"MG+2": 1} 1 "SPERMIDINESYN-MONOMER" "spermidine synthase" ["SpeE"] "MAEKKQWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDNDALRHLSTEIIQARFLASGLKCRYYNPAIHTAAFALPQYLQDALASQPS" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 -"SPOT-MONOMER" "bifunctional (p)ppGpp synthase/hydrolase SpoT" ["SpoT"] "MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPGARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLNEIPQENIQRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQHGDASIPPATQSHGHLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDKETAQEFITEIKVEMFNHQGALANLTAAINTTTSNIQSLNTEEKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRNRN" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 +"SPOT-MONOMER" "bifunctional (p)ppGpp synthase/hydrolase SpoT" ["SpoT"] "MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPGARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLNEIPQENIQRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQHGDASIPPATQSHGHLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDKETAQEFITEIKVEMFNHQGALANLTAAINTTTSNIQSLNTEEKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRNRN" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "SUCCARGDIHYDRO-MONOMER" "N-succinylarginine dihydrolase" ["YdjT", "AstB"] "MNAWEVNFDGLVGLTHHYAGLSFGNEASTRHRFQVSNPRLAAKQGLLKMKALADAGFPQAVIPPHERPFIPVLRQLGFSGSDEQVLEKVARQAPHWLSSVSSASPMWVANAATIAPSADTLDGKVHLTVANLNNKFHRSLEAPVTESLLKAIFNDEEKFSVHSALPQVALLGDEGAANHNRLGGHYGEPGMQLFVYGREEGNDTRPSRYPARQTREASEAVARLNQVNPQQVIFAQQNPDVIDQGVFHNDVIAVSNRQVLFCHQQAFARQSQLLANLRARVNGFMAIEVPATQVSVSDTVSTYLFNSQLLSRDDGSMMLVLPQECREHAGVWGYLNELLAADNPISELKVFDLRESMANGGGPACLRLRVVLTEEERRAVNPAVMMNDTLFNALNDWVDRYYRDRLTAADLADPQLLREGREALDVLSQLLNLGSVYPFQREGGGNG" [] ["CCO-CYTOSOL"] 0 [] {} 1 "SUCCCOASYN-ALPHA" "succinyl-CoA synthetase subunit α" ["SucD", "α subunit"] "MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "SUCCCOASYN-BETA" "succinyl-CoA synthetase subunit β" ["SucC", "β subunit"] "MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEGK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 @@ -4180,7 +4180,7 @@ "SUCCGLUDESUCC-MONOMER" null ["YdjS", "AstE"] "MDNFLALTLTGKKPVITEREINGVRWRWLGDGVLELTPLTPPQGALVISAGIHGNETAPVEMLDALLGAISHGEIPLRWRLLVILGNPPALKQGKRYCHSDMNRMFGGRWQLFAESGETCRARELEQCLEDFYDQGKESVRWHLDLHTAIRGSLHPQFGVLPQRDIPWDEKFLTWLGAAGLEALVFHQEPGGTFTHFSARHFGALACTLELGKALPFGQNDLRQFAVTASAIAALLSGESVGIVRTPPLRYRVVSQITRHSPSFEMHMASDTLNFMPFEKGTLLAQDGEERFTVTHDVEYVLFPNPLVALGLRAGLMLEKIS" [] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 "SUCCORNTRANSAM-MONOMER" "succinylornithine transaminase" ["AstC", "YdjW", "CstC", "ArgM"] "MSQPITRENFDEWMIPVYAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALIDDSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAAACEHFVSRGSS" [] ["CCO-CYTOSOL"] 0 [] {} 1 "SUCCSEMIALDDEHYDROG-MONOMER" "succinate-semialdehyde dehydrogenase (NADP+) GabD" ["GabD", "NADP+-dependent succinate-semialdehyde dehydrogenase"] "MKLNDSNLFRQQALINGEWLDANNGEAIDVTNPANGDKLGSVPKMGADETRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFAEEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQLMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAVSKLHIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYMCIGL" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"SUGE-MONOMER" "guanidinium exporter" ["SugE", "Gdx"] "MSWIILVIAGLLEVVWAVGLKYTHGFSRLTPSVITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESANPMRLASLALIVLGIIGLKLSTH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"SUGE-MONOMER" "guanidinium exporter" ["SugE", "Gdx"] "MSWIILVIAGLLEVVWAVGLKYTHGFSRLTPSVITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESANPMRLASLALIVLGIIGLKLSTH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "SUPEROX-DISMUTFE-MONOMER" "superoxide dismutase (Fe)" ["SodB"] "MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA" ["CCO-MEMBRANE", "CCO-CYTOSOL"] [] 1 [] {"FE+2": 1} 1 "SUPEROX-DISMUTMN-MONOMER" "superoxide dismutase (Mn)" ["SodA", "MnSOD"] "MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFAAKK" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {"MN+2": 1} 1 "TAGAALDOL1-MONOMER" "tagatose-1,6-bisphosphate aldolase 1" ["Kba", "YraC", "AgaY", "KbaY"] "MSIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRISA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 @@ -4189,11 +4189,11 @@ "TAR-MONOMER" "methyl-accepting chemotaxis protein Tar" ["CheM", "MCP-II", "aspartate chemoreceptor protein", "Tar dimer", "chemotaxis signaling protein II"] "MINRIRVVTLLVMVLGVFALLQLISGSLFFSSLHHSQKSFVVSNQLREQQGELTSTWDLMLQTRINLSRSAVRMMMDSSNQQSNAKVELLDSARKTLAQAATHYKKFKSMAPLPEMVATSRNIDEKYKNYYTALTELIDYLDYGNTGAYFAQPTQGMQNAMGEAFAQYALSSEKLYRDIVTDNADDYRFAQWQLAVIALVVVLILLVAWYGIRRMLLTPLAKIIAHIREIAGGNLANTLTIDGRSEMGDLAQSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQSASDTAQHGGKVVDGVVKTMHEIADSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKALIEDSVSRVDTGSVLVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRVTQQNASLVQESAAAAAALEEQASRLTQAVSAFRLAASPLTNKPQTPSRPASEQPPAQPRLRIAEQDPNWETF" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 "TATA" "twin arginine protein translocation system - TatA protein" ["YigT", "MttA1"] "MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDDEPKQDKTSQDADFTAKTIADKQADTNQEQAKTEDAKRHDKEQV" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "TAUA-MONOMER" "taurine ABC transporter periplasmic binding protein" ["YaiR", "SsiA", "taurine transport system periplasmic protein", "Ssi1"] "MAISSRNTLLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQADNTFAKESGATVDWRKFDSGASIVRALASGDVQIGNLGSSPLAVAASQQVPIEVFLLASKLGNSEALVVKKTISKPEDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPPAIIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSAIDAQQPYIANPDVWLKQPENISKLARLSGVPEGDVPGLVKGNTYLTPQQQTAELTGPVNKAIIDTAQFLKEQGKVPAVANDYSQYVTSRFVQ" [] ["CCO-PERI-BAC"] 0 [] {} 1 -"TAUB-MONOMER" "taurine ABC transporter ATP binding subunit" ["YaiQ", "SsiB"] "MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIQLAGKRIEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGIEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTRDQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSSGPGRVLERLPLNFARRFVAGESSRSIKSDPQFIAMREYVLSRVFEQREAFS" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 1 +"TAUB-MONOMER" "taurine ABC transporter ATP binding subunit" ["YaiQ", "SsiB"] "MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIQLAGKRIEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGIEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTRDQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSSGPGRVLERLPLNFARRFVAGESSRSIKSDPQFIAMREYVLSRVFEQREAFS" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 "TAUC-MONOMER" "taurine ABC transporter membrane subunit" ["YaiJ", "SsiC", "G6219"] "MSVLINEKLHSRRLKWRWPLSRQVTLSIGTLAVLLTVWWTVATLQLISPLFLPPPQQVLEKLLTIAGPQGFMDATLWQHLAASLTRIMLALFAAVLFGIPVGIAMGLSPTVRGILDPIIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGVKSVQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGLRALQRRLTPWHGEVQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "TDCC-MONOMER" "threonine/serine:H+ symporter TdcC" ["TdcC", "threonine/serine STP transporter"] "MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPANMAEAKAQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLVLKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTVIGLLTILNIVYKLF" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "TDK-MONOMER" "thymidine/deoxyuridine kinase" ["Tdk"] "MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRFGAGKVSSRIGLSSPAKLFNQNSSLFDEIRAEHEQQAIHCVLVDECQFLTRQQVYELSEVVDQLDIPVLCYGLRTDFRGELFIGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQAGRPYNEGEQVVIGGNERYVSVCRKHYKEALQVDSLTAIQERHRHD" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 -"TDPFUCACTRANS-MONOMER" null ["Rff", "YifH", "RffC", "WecD"] "MPVRASIEPLTWENAFFGVNSAIVRITSEAPLLTPDALAPWSRVQAKIAASNTGELDALQQLGFSLVEGEVDLALPVNNASDSGAVVAQETDIPALRQLASAAFAQSRFRAPWYAPDASSRFYAQWIENAVRGTFDHQCLILRAASGDIRGYVSLRELNATDARIGLLAGRGAGAELMQTALNWAYARGKTTLRVATQMGNTAALKRYIQSGANVESTAYWLYR" [] [] 0 [] {} 1 +"TDPFUCACTRANS-MONOMER" "dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase" ["Rff", "YifH", "RffC", "WecD"] "MPVRASIEPLTWENAFFGVNSAIVRITSEAPLLTPDALAPWSRVQAKIAASNTGELDALQQLGFSLVEGEVDLALPVNNASDSGAVVAQETDIPALRQLASAAFAQSRFRAPWYAPDASSRFYAQWIENAVRGTFDHQCLILRAASGDIRGYVSLRELNATDARIGLLAGRGAGAELMQTALNWAYARGKTTLRVATQMGNTAALKRYIQSGANVESTAYWLYR" [] [] 0 [] {} 1 "TEHA-MONOMER" "tellurite resistance protein" ["TehA"] "MQSDKVLNLPAGYFGIVLGTIGMGFAWRYASQVWQVSHWLGDGLVILAMIIWGLLTSAFIARLIRFPHSVLAEVRHPVLSSFVSLFPATTMLVAIGFVPWFRPLAVCLFSFGVVVQLAYAAWQTAGLWRGSHPEEATTPGLYLPTVANNFISAMACGALGYTDAGLVFLGAGVFSWLSLEPVILQRLRSSGELPTALRTSLGIQLAPALVACSAWLSVNGGEGDTLAKMLFGYGLLQLLFMLRLMPWYLSQPFNASFWSFSFGVSALATTGLHLGSGSDNGFFHTLAVPLFIFTNFIIAILLIRTFALLMQGKLLVRTERAVLMKAEDKE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "TETRAACYLDISACC4KIN-MONOMER" null ["YcaH", "LpxK"] "MIEKIWSGESPLWRLLLPLSWLYGLVSGAIRLCYKLKLKRAWRAPVPVVVVGNLTAGGNGKTPVVVWLVEQLQQRGIRVGVVSRGYGGKAESYPLLLSADTTTAQAGDEPVLIYQRTDAPVAVSPVRSDAVKAILAQHPDVQIIVTDDGLQHYRLARDVEIVVIDGVRRFGNGWWLPAGPMRERAGRLKSVDAVIVNGGVPRSGEIPMHLLPGQAVNLRTGTRCDVAQLEHVVAMAGIGHPPRFFATLKMCGVQPEKCVPLADHQSLNHADVSALVSAGQTLVMTEKDAVKCRAFAEENWWYLPVDAQLSGDEPAKLLTQLTLLASGN" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 0 "THI-P-KIN-MONOMER" "thiamine monophosphate kinase" ["ThiJ", "ThiL", "ATP:thiamine-phosphate phosphotransferase"] "MACGEFSLIARYFDRVRSSRLDVELGIGDDCALLNIPEKQTLAISTDTLVAGNHFLPDIDPADLAYKALAVNLSDLAAMGADPAWLTLALTLPDVDEAWLESFSDSLFDLLNYYDMQLIGGDTTRGPLSMTLGIHGFVPMGRALTRSGAKPGDWIYVTGTPGDSAAGLAILQNRLQVADAKDADYLIKRHLRPSPRILQGQALRDLANSAIDLSDGLISDLGHIVKASDCGARIDLALLPFSDALSRHVEPEQALRWALSGGEDYELCFTVPELNRGALDVALGHLGVPFTCIGQMTADIEGLCFIRDGEPVTLDWKGYDHFATP" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 5} 0 @@ -4215,11 +4215,11 @@ "THRS-MONOMER" "threonine—tRNA ligase" ["ThrS", "ThrRS"] "MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRSLKQLEE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 1 "THYMIDYLATESYN-MONOMER" "thymidylate synthase" ["ThyA"] "MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "THZ-KIN-MONOMER" "hydroxyethylthiazole kinase" ["ThiM"] "MQVDLLGSAQSAHALHLFHQHSPLVHCMTNDVVQTFTANTLLALGASPAMVIETEEASQFAAIASALLINVGTLTQPRAQAMRAAVEQAKSSQTPWTLDPVAVGALDYRRHFCHELLSFKPAAIRGNASEIMALAGIANGGRGVDTTDAAANAIPAAQTLARETGAIVVVTGEMDYVTDGHRIIGIHGGDPLMTKVVGTGCALSAVVAACCALPGDTLENVASACHWMKQAGERAVARSEGPGSFVPHFLDALWQLTQEVQA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"TNAB-MONOMER" null ["TrpP", "TnaP", "TnaB", "TnaB tryptophan ArAAP transporter"] "MTDQAEKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWLSSLAASRITSLFLGLKIISFVIVFGSFFFQVDYSILRDATSSTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNSHGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVILCWFGNVFNVLPKFG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"TNAB-MONOMER" null ["TrpP", "TnaP", "TnaB", "TnaB tryptophan ArAAP transporter"] "MTDQAEKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWLSSLAASRITSLFLGLKIISFVIVFGSFFFQVDYSILRDATSSTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNSHGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVILCWFGNVFNVLPKFG" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "TORA-MONOMER" "trimethylamine N-oxide reductase 1" ["TorA"] "MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATDAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGLRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {"CPD-15873": 1} 1 "TORR-MONOMER" "DNA-binding transcriptional dual regulator TorR" ["TorR response regulator", "TorR"] "MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC" [] ["CCO-CYTOSOL"] 0 [] {} 1 "TORS-MONOMER" "sensor histidine kinase TorS" ["YccI", "TorS"] "MNLTLTRRLWMGFALMALLTLTSTLVGWYNLRFISQVEKDNTQALIPTMNMARQLSEASAWELFAAQNLTSADNEKMWQAQGRMLTAQSLKINALLQALREQGFDTTAIEQQEQEISRSLRQQGELVGQRLQLRQQQQQLSQQIVAAADEIARLAQGQANNATTSAGATQAGIYDLIEQDQRQAAESALDRLIDIDLEYVNQMNELRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRIEDPGVRAQVATTLTTVSQYSDLLALYQQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDTIELRNQHGLAHLEKASARGQYSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEGYIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQAVRLDGLRLLLIEDNPLTQRITIEMLKTSGAQIVAVGNAAQALETLQNSEPFAAALVDFDLPDIDGITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQVNNDQSLDVSQLNEDAQLMGTEKIHEWLVLFTQHALPLLDEIDIARASQDSEKIKRAAHQLKSSCSSLGMHIASQLCAQLEQQPLSAPLPHEEITRSVAALEAWLHKKDLNAI" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"TORT-MONOMER" "periplasmic trimethylamine-N-oxide binding protein" ["YccH", "TorT"] "MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK" [] ["CCO-PERI-BAC"] 0 [] {} 0 +"TORT-MONOMER" "periplasmic trimethylamine-N-oxide binding protein" ["YccH", "TorT"] "MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK" [] ["CCO-PERI-BAC"] 0 [] {} 1 "TPI-MONOMER" "triose-phosphate isomerase" ["Tpi", "TpiA"] "MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "TRANSALDOLA-MONOMER" "transaldolase A" ["TalA"] "MNELDGIKQFTTVVADSGDIESIRHYHPQDATTNPSLLLKAAGLSQYEHLIDDAIAWGKKNGKTQEQQVVAACDKLAVNFGAEILKIVPGRVSTEVDARLSFDKEKSIEKARHLVDLYQQQGVEKSRILIKLASTWEGIRAAEELEKEGINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHHYETIVMGASFRRTEQILALTGCDRLTIAPNLLKELQEKVSPVVRKLIPPSQTFPRPAPMSEAEFRWEHNQDAMAVEKLSEGIRLFAVDQRKLEDLLAAKL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "TRANSALDOLB-MONOMER" "transaldolase B" ["YaaK", "TalB"] "MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAKQQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCDRLTIAPALLKELAESEGAIERKLSYTGEVKARPARITESEFLWQHNQDPMAVDKLAEGIRKFAIDQEKLEKMIGDLL" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 @@ -4232,7 +4232,7 @@ "TREHALOSE6PSYN-MONOMER" null ["OtsA"] "MSRLVVVSNRIAPPDEHAASAGGLAVGILGALKAAGGLWFGWSGETGNEDQPLKKVKKGNITWASFNLSEQDLDEYYNQFSNAVLWPAFHYRLDLVQFQRPAWDGYLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQIVPRSAESQQRDKVATFPKLA" [] ["CCO-CYTOSOL"] 1 [] {} 0 "TREHALOSEPHOSPHASYN-MONOMER" null ["OtsP", "OtsB"] "MTEPLTETPELSAKYAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATASDGALALISGRSMVELDALAKPYRFPLAGVHGAERRDINGKTHIVHLPDAIARDISVQLHTVIAQYPGAELEAKGMAFALHYRQAPQHEDALMTLAQRITQIWPQMALQQGKCVVEIKPRGTSKGEAIAAFMQEAPFIGRTPVFLGDDLTDESGFAVVNRLGGMSVKIGTGATQASWRLAGVPDVWSWLEMITTALQQKRENNRSDDYESFSRSI" [] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 0 "TRG-MONOMER" "methyl-accepting chemotaxis protein Trg" ["MCP-III", "ribose/galactose/glucose chemoreceptor protein", "Trg", "Trg dimer", "chemotaxis signaling protein III"] "MNTTPSQRLGFLHHIRLVPLFACILGGILVLFALSSALAGYFLWQADRDQRDVTAEIEIRTGLANSSDFLRSARINMIQAGAASRIAEMEAMKRNIAQAESEIKQSQQGYRAYQNRPVKTPADEALDTELNQRFQAYITGMQPMLKYAKNGMFEAIINHESEQIRPLDNAYTDILNKAVKIRSTRANQLAELAHQRTRLGGMFMIGAFVLALVMTLITFMVLRRIVIRPLQHAAQRIEKIASGDLTMNDEPAGRNEIGRLSRHLQQMQHSLGMTVGTVRQGAEEIYRGTSEISAGNADLSSRTEEQAAAIEQTAASMEQLTATVKQNADNAHHASKLAQEASIKASDGGQTVSGVVKTMGAISTSSKKISEITAVINSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLASRSAQAAKEIEGLISESVRLIDLGSDEVATAGKTMSTIVDAVASVTHIMQEIAAASDEQSRGITQVSQAISEMDKVTQQNASLVEEASAAAVSLEEQAARLTEAVDVFRLHKHSVSAEPRGAGEPVSFATV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"TRKA-MONOMER" "NAD-binding component of Trk potassium transporters" ["TrkA"] "MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRTLQDKFDLRVVQGHGSHPRVLREAGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSPDYVRDADKLFHSDAVPIDHLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKAYYGGPLIGNALSTMREHMPHIDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIAASQHIRAVMSELQRLEKPYKRIMLVGGGNIGAGLARRLEKDYSVKLIERNQQRAAELAEKLQNTIVFFGDASDQELLAEEHIDQVDLFIAVTNDDEANIMSAMLAKRMGAKKVMVLIQRRAYVDLVQGSVIDIAISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVAHGDESTSRVVGRVIDEIKLPPGTIIGAVVRGNDVMIANDNLRIEQGDHVIMFLTDKKFITDVERLFQPSPFFL" ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 +"TRKA-MONOMER" "NAD-binding component of Trk potassium transporters" ["TrkA"] "MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRTLQDKFDLRVVQGHGSHPRVLREAGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSPDYVRDADKLFHSDAVPIDHLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKAYYGGPLIGNALSTMREHMPHIDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIAASQHIRAVMSELQRLEKPYKRIMLVGGGNIGAGLARRLEKDYSVKLIERNQQRAAELAEKLQNTIVFFGDASDQELLAEEHIDQVDLFIAVTNDDEANIMSAMLAKRMGAKKVMVLIQRRAYVDLVQGSVIDIAISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVAHGDESTSRVVGRVIDEIKLPPGTIIGAVVRGNDVMIANDNLRIEQGDHVIMFLTDKKFITDVERLFQPSPFFL" ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "TRKG-MONOMER" "Rac prophage; Na+-dependent K+ transporter TrkG" ["TrkG"] "MNTSHVRVVTHMCGFLVWLYSLSMLPPMVVALFYKEKSLFVFFITFVIFFCIGGGAWYTTKKSGIQLRTRDGFIIIVMFWILFSVISAFPLWIDSELNLTFIDALFEGVSGITTTGATVIDDVSSLPRAYLYYRSQLNFIGGLGVIVLAVAVLPLLGIGGAKLYQSEMPGPFKDDKLTPRLADTSRTLWITYSLLGIACIVCYRLAGMPLFDAICHGISTVSLGGFSTHSESIGYFNNYLVELVAGSFSLLSAFNFTLWYIVISRKTIKPLIRDIELRFFLLIALGVIIVTSFQVWHIGMYDLHGSFIHSFFLASSMLTDNGLATQDYASWPTHTIVFLLLSSFFGGCIGSTCGGIKSLRFLILFKQSKHEINQLSHPRALLSVNVGGKIVTDRVMRSVWSFFFLYTLFTVFFILVLNGMGYDFLTSFATVAACINNMGLGFGATASSFGVLNDIAKCLMCIAMILGRLEIYPVIILFSGFFWRS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"K+": 1} 0 "TRKH-MONOMER" null ["TrkH"] "MHFRAITRIVGLLVILFSGTMIIPGLVALIYRDGAGRAFTQTFFVALAIGSMLWWPNRKEKGELKSREGFLIVVLFWTVLGSVGALPFIFSESPNLTITDAFFESFSGLTTTGATTLVGLDSLPHAILFYRQMLQWFGGMGIIVLAVAILPILGVGGMQLYRAEMPGPLKDNKMRPRIAETAKTLWLIYVLLTVACALALWFAGMDAFDAIGHSFATIAIGGFSTHDASIGYFDSPTINTIIAIFLLISGCNYGLHFSLLSGRSLKVYWRDPEFRMFIGVQFTLVVICTLVLWFHNVYSSALMTINQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTGGGLKVIRILLLFKQGNRELKRLVHPNAVYSIKLGNRALPERILEAVWGFFSAYALVFIVSMLAIIATGVDDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFGRLEVFTLLVLFTPTFWRE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"K+": 1} 0 "TRPS-MONOMER" "tryptophan—tRNA ligase" ["TrpS", "TrpRS"] "MTKPIVFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQKLRKATLDTLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARYAENINAGLFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNALYGEIFKVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVVKKIKRAVTDSDEPPVVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVADAVSGMLTELQERYHRFRNDEAFLQQVMKDGAEKASAHASRTLKAVYEAIGFVAKP" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -4244,14 +4244,14 @@ "TTDA-MONOMER" "L(+)-tartrate dehydratase subunit α" ["YgjA", "TtdA"] "MMSESNKQQAVNKLTEIVANFTAMISTRMPDDVVDKLKQLKDAETSSMGKIIYHTMFDNMQKAIDLNRPACQDTGEIMFFVKVGSRFPLLGELQSILKQAVEEATVKAPLRHNAVEIFDEVNTGKNTGSGVPWVTWDIIPDNDDAEIEVYMAGGGCTLPGRSKVLMPSEGYEGVVKFVFENISTLAVNACPPVLVGVGIATSVETAAVLSRKAILRPIGSRHPNPKAAELELRLEEGLNRLGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTGCWAHRRGTLLVHADLTFENLSHTRSAL" [] ["CCO-CYTOSOL"] 0 [] {"CPD-7": 1} 1 "TTDB-MONOMER" "L(+)-tartrate dehydratase subunit β" ["YgjB", "TtdB"] "MKKILTTPIKAEDLQDIRVGDVIYLTGTLVTCRDVCHRRLIELKRPIPYDLNGKAIFHAGPIVRKNGDKWEMVSVGPTTSMRMESFEREFIEQTGVKLVVGKGGMGPLTEEGCQKFKALHVIFPAGCAVLAATQVEEIEEVHWTELGMPESLWVCRVKEFGPLIVSIDTHGNNLIAENKKLFAERRDPIVEEICEHVHYIK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "TYRB-MONOMER" "tyrosine aminotransferase" ["TyrB"] "MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 -"TYRP-MONOMER" null ["TyrP", "tyrosine ArAAP transporter"] "MKNRTLGSVFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSATAGVLLFTFVAGGVVCVGTSLVDLFNRFLFSAKIIFLVVMLVLLLPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMDGNIRKLRWVFIIGSAIPLVAYIFWQVATLGSIDSTTFMGLLANHAGLNGLLQALREMVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRSNTVGGRLQTGAITFLPPLAFALFYPRGFVMALGYAGVALAVLALIIPSLLTWQSRKHNPQAGYRVKGGRPALVVVFLCGIAVIGVQFLIAAGLLPEVG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"TYRP-MONOMER" null ["TyrP", "tyrosine ArAAP transporter"] "MKNRTLGSVFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSATAGVLLFTFVAGGVVCVGTSLVDLFNRFLFSAKIIFLVVMLVLLLPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMDGNIRKLRWVFIIGSAIPLVAYIFWQVATLGSIDSTTFMGLLANHAGLNGLLQALREMVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRSNTVGGRLQTGAITFLPPLAFALFYPRGFVMALGYAGVALAVLALIIPSLLTWQSRKHNPQAGYRVKGGRPALVVVFLCGIAVIGVQFLIAAGLLPEVG" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "TYRS-MONOMER" "tyrosine—tRNA ligase" ["TyrS"] "MASSNLIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDFACLNKQYGVVLQIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTEGGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFTFMSIEEINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLQAAKRITECLFSGSLSALSEADFEQLAQDGVPMVEMEKGADLMQALVDSELQPSRGQARKTIASNAITINGEKQSDPEYFFKEEDRLFGRFTLLRRGKKNYCLICWK" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "UBIX-MONOMER" "flavin prenyltransferase" ["DedF", "UbiX"] "MKRLIVGISGASGAIYGVRLLQVLRDVTDIETHLVMSQAARQTLSLETDFSLREVQALADVTHDARDIAASISSGSFQTLGMVILPCSIKTLSGIVHSYTDGLLTRAADVVLKERRPLVLCVRETPLHLGHLRLMTQAAEIGAVIMPPVPAFYHRPQSLDDVINQTVNRVLDQFAITLPEDLFARWQGA" [] ["CCO-CYTOSOL"] 0 [] {} 0 "UDHA-MONOMER" "soluble pyridine nucleotide transhydrogenase" ["SthA", "Sth", "UdhA"] "MPHSYDYDAIVIGSGPGGEGAAMGLVKQGARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADILNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAALNGLNRLF" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 "UDK-MONOMER" "uridine/cytidine kinase" ["Udk"] "MTDQSHQCVIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDCYYKDQSHLSMEERVKTNYDHPSAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTRMKETVTVEPKKVIILEGILLLTDARLRDELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQYADIIVPRGGKNRIAIDILKAKISQFFE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "UDP-NACMUR-ALA-LIG-MONOMER" "UDP-N-acetylmuramate—L-alanine ligase" ["MurC"] "MNTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRGRGKIDPILVPDPARVAEMLAPVLTGNDLILVQGAGNIGKIARSLAEIKLKPQTPEEEQHD" [] ["CCO-CYTOSOL"] 0 [] {} 1 "UDP-NACMURALA-GLU-LIG-MONOMER" "UDP-N-acetylmuramoyl-L-alanine—D-glutamate ligase" ["MurD"] "MADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDECELYVLELSSFQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKELG" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 -"UDP-NACMURALGLDAPAALIG-MONOMER" "UDP-N-acetylmuramoyl-tripeptide—D-alanyl-D-alanine ligase" ["Mra", "MurF"] "MISVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTASGVGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQENGTC" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 +"UDP-NACMURALGLDAPAALIG-MONOMER" "UDP-N-acetylmuramoyl-tripeptide—D-alanyl-D-alanine ligase" ["Mra", "MurF", "D-alanyl-D-alanine-adding enzyme"] "MISVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTASGVGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQENGTC" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 "UDP-NACMURALGLDAPLIG-MONOMER" null ["MurE"] "MADRNLRDLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLLGVIA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 0 "UDPACYLGLCNACDEACETYL-MONOMER" null ["EnvA", "AsmB", "LpxC"] "MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIPIMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNHPAIDSSNQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVLAKQEAWEYVTFQDDAELPLAFKAPSAVLA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"ZN+2": 1} 0 "UDPGLCNACEPIM-MONOMER" "UDP-N-acetylglucosamine 2-epimerase" ["MnaA", "YifF", "RffE", "NfrC", "WecB"] "MKVLTVFGTRPEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQACSRILEALKNNRISL" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 @@ -4265,7 +4265,7 @@ "UGD-MONOMER" "UDP-glucose 6-dehydrogenase" ["Udg", "YefA", "Ugd", "PmrE"] "MKITISGTGYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPMLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNSRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYQSVPNNLISAIVDANRTRKDFIADAILSRKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSFFNSRLERDLATFKQQADVIISNRMAEELKDVADKVYTRDLFGSD" [] ["CCO-CYTOSOL"] 0 [] {} 1 "UGPA-MONOMER" "sn-glycerol 3-phosphate ABC transporter membrane subunit UgpA" ["Ugp", "PsiC", "PsiB"] "MSSSRPVFRSRWLPYLLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVTLFHDSYYLDSFWTTIKFSTFVTVSGLLVSLFFAALVEYIVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFYAALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATSGGPVQATTTLIYKIYREGFTGLDLASSAAQSVVLMFLVIVLTVVQFRYVESKVRYQ" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "UGPB-MONOMER" "sn-glycerol 3-phosphate ABC transporter periplasmic binding protein" ["PsiC", "PsiB"] "MKPLHYTASALALGLALMGNAQAVTTIPFWHSMEGELGKEVDSLAQRFNAENPDYKIVPTYKGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIKPVYDVFKEAGIQFDESQFVPTVSGYYSDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADYAAKLKASGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIAMLEEMNKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLANIREYAKFNYGVGMMPYDADAKDAPQNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKPENAAEWHQKTGYLPITKAAYDLTREQGFYEKNPGADTATRQMLNKPPLPFTKGLRLGNMPQIRVIVDEELESVWTGKKTPQQALDTAVERGNQLLRRFEKSTKS" ["CCO-MEMBRANE", "CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 -"UGPC-MONOMER" "sn-glycerol 3-phosphate ABC transporter ATP binding subunit" [] "MAGLKLQAVTKSWDGKTQVIKPLTLDVADGEFIVMVGPSGCGKSTLLRMVAGLERVTEGDIWINDQRVTEMEPKDRGIAMVFQNYALYPHMSVEENMAWGLKIRGMGKQQIAERVKEAARILELDGLLKRRPRELSGGQRQRVAMGRAIVRDPAVFLFDEPLSNLDAKLRVQMRLELQQLHRRLKTTSLYVTHDQVEAMTLAQRVMVMNGGVAEQIGTPVEVYEKPASLFVASFIGSPAMNLLTGRVNNEGTHFELDGGIELPLNGGYRQYAGRKMTLGIRPEHIALSSQAEGGVPMVMDTLEILGADNLAHGRWGEQKLVVRLAHQERPTAGSTLWLHLAENQLHLFDGETGQRV" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 1 +"UGPC-MONOMER" "sn-glycerol 3-phosphate ABC transporter ATP binding subunit" [] "MAGLKLQAVTKSWDGKTQVIKPLTLDVADGEFIVMVGPSGCGKSTLLRMVAGLERVTEGDIWINDQRVTEMEPKDRGIAMVFQNYALYPHMSVEENMAWGLKIRGMGKQQIAERVKEAARILELDGLLKRRPRELSGGQRQRVAMGRAIVRDPAVFLFDEPLSNLDAKLRVQMRLELQQLHRRLKTTSLYVTHDQVEAMTLAQRVMVMNGGVAEQIGTPVEVYEKPASLFVASFIGSPAMNLLTGRVNNEGTHFELDGGIELPLNGGYRQYAGRKMTLGIRPEHIALSSQAEGGVPMVMDTLEILGADNLAHGRWGEQKLVVRLAHQERPTAGSTLWLHLAENQLHLFDGETGQRV" ["CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 "UGPE-MONOMER" "sn-glycerol 3-phosphate ABC transporter membrane subunit UgpE" [] "MIENRPWLTIFSHTMLILGIAVILFPLYVAFVAATLDKQAVYAAPMTLIPGTHLLENIHNIWVNGVGTNSAPFWRMLLNSFVMAFSITLGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLQMLDSYAGLTLPLMASATATFLFRQFFMTLPDELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWPLLIITDVDLGTTVAGIKGMIATGEGTTEWNSVMVAMLLTLIPPVVIVLVMQRAFVRGLVDSEK" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "UHPA-MONOMER" "DNA-binding transcriptional activator UhpA" ["UhpA response regulator", "UhpA"] "MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW" [] ["CCO-CYTOSOL"] 0 [] {} 0 "UHPB-MONOMER" "sensor histidine kinase UhpB" [] "MKTLFSRLITVIACFFIFSAAWFCLWSISLHLVERPDMAVLLFPFGLRLGLMLQCPRGYWPVLLGAEWLLIYWLTQAVGLTHFPLLMIGSLLTLLPVALISRYRHQRDWRTLLLQGAALTAAALLQSLPWLWHGKESWNALLLTLTGGLTLAPICLVFWHYLANNTWLPLGPSLVSQPINWRGRHLVWYLLLFVISLWLQLGLPDELSRFTPFCLALPIIALAWHYGWQGALIATLMNAIALIASQTWRDHPVDLLLSLLVQSLTGLLLGAGIQRLRELNQSLQKELARNQHLAERLLETEESVRRDVARELHDDIGQTITAIRTQAGIVQRLAADNASVKQSGQLIEQLSLGVYDAVRRLLGRLRPRQLDDLTLEQAIRSLMREMELEGRGIVSHLEWRIDESALSENQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQDERLMLVIEDDGSGLPPGSGQQGFGLTGMRERVTALGGTLHISCLHGTRVSVSLPQRYV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -4273,7 +4273,7 @@ "UHPT-MONOMER" "hexose-6-phosphate:phosphate antiporter" ["UhpT", "UhpT-hexose phosphate MFS transporter"] "MLAFLNQVRKPTLDLPLEVRRKMWFKPFMQSYLVVFIGYLTMYLIRKNFNIAQNDMISTYGLSMTQLGMIGLGFSITYGVGKTLVSYYADGKNTKQFLPFMLILSAICMLGFSASMGSGSVSLFLMIAFYALSGFFQSTGGSCSYSTITKWTPRRKRGTFLGFWNISHNLGGAGAAGVALFGANYLFDGHVIGMFIFPSIIALIVGFIGLRYGSDSPESYGLGKAEELFGEEISEEDKETESTDMTKWQIFVEYVLKNKVIWLLCFANIFLYVVRIGIDQWSTVYAFQELKLSKAVAIQGFTLFEAGALVGTLLWGWLSDLANGRRGLVACIALALIIATLGVYQHASNEYIYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGAADGIKGTFAYLIGDSFAKLGLGMIADGTPVFGLTGWAGTFAALDIAAIGCICLMAIVAVMEERKIRREKKIQQLTVA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "UIDB-MONOMER" "glucuronide:H+ symporter" ["UidP", "GusB", "UidB", "glucuronide GPH transporter"] "MNQQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVLTDWSHGSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQPSLNISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQTPEVIMGIRTSIALVPCGFMLLAFVIIWFYPLTDKKFKEIVVEIDNRKKVQQQLISDITN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "UMPKI-MONOMER" "UMP kinase" ["Umk", "SmbA", "PyrH"] "MATNAKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADVVLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLITE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 1 [] {} 1 -"UPPSYN-MONOMER" "ditrans,polycis-undecaprenyl-diphosphate synthase [(2E,6E)-farnesyl-diphosphate specific]" ["IspU", "Rth", "YaeS", "UppS"] "MMLSATQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFGGTEPGDETA" ["CCO-CYTOSOL"] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 +"UPPSYN-MONOMER" "ditrans,polycis-undecaprenyl-diphosphate synthase [(2E,6E)-farnesyl-diphosphate specific]" ["IspU", "Rth", "YaeS", "UppS"] "MMLSATQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFGGTEPGDETA" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {"MG+2": 1} 1 "URAA-MONOMER" "uracil:H+ symporter UraA" ["UraA", "uracil NCS2 transporter"] "MTRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTLYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGMALATIVGIGLSLIFKLISVLRPEEVVLDAEDADITDK" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 "URACIL-PRIBOSYLTRANS-MONOMER" "uracil phosphoribosyltransferase" ["UraP", "Upp"] "MKIVEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWNGPVEIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSNIDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLVAAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK" ["CCO-MEMBRANE", "CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 1 "UROGENDECARBOX-MONOMER" "uroporphyrinogen decarboxylase" ["HemE"] "MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVEAVHRLSEQYHR" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 @@ -4297,22 +4297,22 @@ "YAAU-MONOMER" "putative transporter YaaU" ["YaaU", "YabE"] "MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YADG-MONOMER" "putative ABC transporter ATP-binding protein YadG" ["YadG"] "MTIALELQQLKKTYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSETFILDLAPKSPLPKLDGYQYRLVDTATLEVEVLREQGINSVFTQLSEQGIQVLSMRNKANRLEELFVSLVNEKQGDRA" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "YADH-MONOMER" "putative ABC transporter membrane subunit YadH" ["YadH"] "MMHLYWVALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGNLIGSRIGDMHGFSYMQFIVPGLIMMSVITNAYANVASSFFGAKFQRNIEELLVAPVPTHVIIAGYVGGGVARGLFVGILVTAISLFFVPFQVHSWVFVALTLVLTAVLFSLAGLLNGVFAKTFDDISLVPTFVLTPLTYLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGFLGINDVPLVTTFGVLVVFIVAFYLICWSLIQRGRGLRS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"YADQ-MONOMER" "chloride:H+ antiporter ClcA" ["EriC", "ClcA", "YadQ", "ClC-ec1"] "MKTDTPSLETPQAARLRRRQLIRQLLERDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILARTLAKQEAEQLARSKAASASENT" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"YAGC-MONOMER" "CP4-6 prophage; ABC transporter ATP-binding protein AfuC" ["YagC", "AfuC", "FbpC"] "MTQKNFVELRNVTKRFGSNTVIDNINLTIPQGQMVTLLGPSGCGKTTILRLVAGLEKPSEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPRAELKARVKEALAMVDLEGFEDRFVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMRDKIRELQKQFDITSLYVTHDQSEAFAVSDTVLVMNKGHIMQIGSPQDLYRQPASRFMASFMGDANLFPATFSDGYVDIYGYHLPRPLHFGTQGEGMVGVRPEAITLSDRGEESQRCVIRHVAYMGPQYEVTVEWHGQEILLQVNATRLQPDVGEQYYLEIHPYGMFVLADAA" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 0 +"YADQ-MONOMER" "chloride:H+ antiporter ClcA" ["EriC", "ClcA", "YadQ", "ClC-ec1"] "MKTDTPSLETPQAARLRRRQLIRQLLERDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILARTLAKQEAEQLARSKAASASENT" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"YAGC-MONOMER" "CP4-6 prophage; ABC transporter ATP-binding protein AfuC" ["YagC", "AfuC", "FbpC"] "MTQKNFVELRNVTKRFGSNTVIDNINLTIPQGQMVTLLGPSGCGKTTILRLVAGLEKPSEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPRAELKARVKEALAMVDLEGFEDRFVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMRDKIRELQKQFDITSLYVTHDQSEAFAVSDTVLVMNKGHIMQIGSPQDLYRQPASRFMASFMGDANLFPATFSDGYVDIYGYHLPRPLHFGTQGEGMVGVRPEAITLSDRGEESQRCVIRHVAYMGPQYEVTVEWHGQEILLQVNATRLQPDVGEQYYLEIHPYGMFVLADAA" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 "YBAL-MONOMER" "putative transporter YbaL" ["YlaA", "YbaL"] "MHHATPLITTIVGGLVLAFILGMLANKLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKAIAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDMGITIGKVIAFIAIMMLVGRRLVPWIMARSAATGSRELFTLSVLALALGVAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPLILIQQPLAVLATLAIILFGKSLAAFFLVRLFGHSQRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFALLEKYLAKTETLEEQTLEEAIEEEKQIPVDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLETPPAGEVVTG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YBBA-MONOMER" "putative ABC transporter ATP-binding protein YbbA" ["YbbA"] "MPAENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALVGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHNMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSAESRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIMVTHDLQLAARCDRCLRLVNGQLQEEA" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "YBBL-MONOMER" "putative iron ABC exporter ATP-binding subunit FetA" ["YbbL", "FetA"] "MQENSPLLQLQNVGYLAGDAKILNNINFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNRQPDPAIFLDFLERFALPDSILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEMIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYELA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YBBP-MONOMER" "putative ABC transporter membrane subunit YbbP" ["YbbP"] "MIARWFWREWRSPSLLIVWLALSLAVACVLALGNISDRMEKGLSQQSREFMAGDRALRSSREVPQAWLEEAQKRGLKVGKQLTFATMTFAGDTPQLANVKAVDDIYPMYGDLQTNPPGLKPQAGSVLLAPRLMALLNLKTGDTIDVGDATLRIAGEVIQEPDSGFNPFQMAPRLMMNLADVDKTGAVQPGSRVTWRYKFGGNENQLDGYEKWLLPQLKPEQRWYGLEQDEGALGRSMERSQQFLLLSALLTLLLAVAAVAVAMNHYCRSRYDLVAILKTLGAGRAQLRKLIVGQWLMVLTLSAVTGGAIGLLFENVLMVLLKPVLPAALPPASLWPWLWALGTMTVISLLVGLRPYRLLLATQPLRVLRNDVVANVWPLKFYLPIVSVVVVLLLAGLMGGSMLLWAVLAGAVVLALLCGVLGWMLLNVLRRMTLKSLPLRLAVSRLLRQPWSTLSQLSAFSLSFMLLALLLVLRGDLLDRWQQQLPPESPNYFLINIATEQVAPLKAFLAEHQIVPESFYPVVRARLTAINDKPTEGNEDEALNRELNLTWQNTRPDHNPIVAGNWPPKADEVSMEEGLAKRLNVALGDTVTFMGDTQEFRAKVTSLRKVDWESLRPNFYFIFPEGALDGQPQSWLTSFRWENGNGMLTQLNRQFPTISLLDIGAILKQVGQVLEQVSRALEVMVVLVTACGMLLLLAQVQVGMRQRHQELVVWRTLGAGKKLLRTTLWCEFAMLGFVSGLVAAIGAETALAVLQAKVFDFPWEPDWRLWIVLPCSGALLLSLFGGWLGARLVKGKALFRQFAG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"YBDA-MONOMER" null ["EntS", "YbdA", "P43"] "MNKQSWLLNLSLLKTHPAFRAVFLARFISIVSLGLLGVAVPVQIQMMTHSTWQVGLSVTLTGGAMFVGLMVGGVLADRYERKKVILLARGTCGIGFIGLCLNALLPEPSLLAIYLLGLWDGFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPMIGGLLLATGGVAWNYGLAAAGTFITLLPLLSLPALPPPPQPREHPLKSLLAGFRFLLASPLVGGIALLGGLLTMASAVRVLYPALADNWQMSAAQIGFLYAAIPLGAAIGALTSGKLAHSARPGLLMLLSTLGSFLAIGLFGLMPMWILGVVCLALFGWLSAVSSLLQYTMLQTQTPEAMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLVELRHFRQTPPQVTASDS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"YBDA-MONOMER" null ["EntS", "YbdA", "P43"] "MNKQSWLLNLSLLKTHPAFRAVFLARFISIVSLGLLGVAVPVQIQMMTHSTWQVGLSVTLTGGAMFVGLMVGGVLADRYERKKVILLARGTCGIGFIGLCLNALLPEPSLLAIYLLGLWDGFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPMIGGLLLATGGVAWNYGLAAAGTFITLLPLLSLPALPPPPQPREHPLKSLLAGFRFLLASPLVGGIALLGGLLTMASAVRVLYPALADNWQMSAAQIGFLYAAIPLGAAIGALTSGKLAHSARPGLLMLLSTLGSFLAIGLFGLMPMWILGVVCLALFGWLSAVSSLLQYTMLQTQTPEAMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLVELRHFRQTPPQVTASDS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "YBDE-MONOMER" "copper/silver export system RND permease" ["YbdE"] "MIEWIIRRSVANRFLVLMGALFLSIWGTWTIINTPVDALPDLSDVQVIIKTSYPGQAPQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQVQGKLPAGVSAELGPDATGVGWIYEYALVDRSGKHDLADLRSLQDWFLKYELKTIPDVAEVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASGYLQTLDDFNHIVLKASENGVPVYLRDVAKVQIGPEMRRGIAELNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDNLSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPLNRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTLPGISAAEAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQEQWRPGMTMDKIIEELDNTVRLPGLANLWVPPIRNRIDMLSTGIKSPIGIKVSGTVLADIDAMAEQIEEVARTVPGVASALAERLEGGRYINVEINREKAARYGMTVADVQLFVTSAVGGAMVGETVEGIARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADIKVSTGPSMLKTENARPTSWIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKLKLMVPMTLMIIFVLLYLAFRRVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAEFGVVMLMYLRHAIEAVPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "YBHF-MONOMER" "ABC exporter ATP binding subunit YbhF" ["YbhF"] "MNDAVITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDSGSATVIGFDPIKNDGALHAVLGYMPQKFGLYEDLTVMENLNLYADLRSVTGEARKQTFARLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQMVHELAGEGMLILWSTSYLDEAEQCRDVLLMNEGELLYQGEPKALTQTMAGRSFLMTSPHEGNRKLLQRALKLPQVSDGMIQGKSVRLILKKEATPDDIRHADGMPEININETTPRFEDAFIDLLGGAGTSESPLGAILHTVEGTPGETVIEAKELTKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVLGMDLKESSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKISRMSEAFGLKSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVEKGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQSANDEQPDPTMEQAFIQLIHDWDKEHSNE" ["CCO-PM-BAC-NEG"] [] 0 [] {} 1 "YBHR-MONOMER" "ABC exporter membrane subunit YbhR" ["YbhR"] "MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLEVTNATIAIYDEDNGEHSVELTQRFARASAFTHVLLLKSPQEIRPTIDTQKALLLVRFPADFSRKLDTFQTAPLQLILDGRNSNSAQIAANYLQQIVKNYQQELLEGKPKPNNSELVVRNWYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAVPALIVATFQATIVLAIGIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCSTQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTWINPIRHFTDITKQIYLKDASLDIVWNSLWPLLVITATTGSAAYAMFRRKVM" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "YBHS-MONOMER" "ABC exporter membrane subunit YbhS" ["YbhS"] "MSNPILSWRRVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFGYGINLDSSKLRVGILLEQRSEAALDFTHTMTGSPYIDATISDNRQELIAKMQAGKIRGLVVIPVDFAEQMERANATAPIQVITDGSEPNTANFVQGYVEGIWQIWQMQRAEDNGQTFEPLIDVQTRYWFNPAAISQHFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLSTEITRTELLLCKLIPYYFLGMLAMLLCMLVSVFILGVPYRGSLLILFFISSLFLLSTLGMGLLISTITRNQFNAAQVALNAAFLPSIMLSGFIFQIDSMPAVIRAVTYIIPARYFVSTLQSLFLAGNIPVVLVVNVLFLIASAVMFIGLTWLKTKRRLD" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"YCAD-MONOMER" "putative transporter YcaD" ["YcaD"] "MSTYTQPVMLLLSGLLLLTLAIAVLNTLVPLWLAQEHMSTWQVGVVSSSYFTGNLVGTLLTGYVIKRIGFNRSYYLASFIFAAGCAGLGLMIGFWSWLAWRFVAGVGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYVGTFLGQLLVSKVSTELMSVLPWVTGLTLAGILPLLFTRVLNQQAENHDSTSITSMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHKGVSNASIGFWMAVLVSAGILGQWPIGRLADKFGRLLVLRVQVFVVILGSIAMLSQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHQLVAMNQALLLSYTVGSLLGPSFTAMLMQNFSDNLLFIMIASVSFIYLLMLLRNAGHTPKPVAHV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"YCAD-MONOMER" "putative transporter YcaD" ["YcaD"] "MSTYTQPVMLLLSGLLLLTLAIAVLNTLVPLWLAQEHMSTWQVGVVSSSYFTGNLVGTLLTGYVIKRIGFNRSYYLASFIFAAGCAGLGLMIGFWSWLAWRFVAGVGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYVGTFLGQLLVSKVSTELMSVLPWVTGLTLAGILPLLFTRVLNQQAENHDSTSITSMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHKGVSNASIGFWMAVLVSAGILGQWPIGRLADKFGRLLVLRVQVFVVILGSIAMLSQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHQLVAMNQALLLSYTVGSLLGPSFTAMLMQNFSDNLLFIMIASVSFIYLLMLLRNAGHTPKPVAHV" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "YCAM" "putative transporter YcaM" ["YcaM"] "MAGNVQEKQLRWYNIALMSFITVWGFGNVVNNYANQGLVVVFSWVFIFALYFTPYALIVGQLGSTFKDGKGGVSTWIKHTMGPGLAYLAAWTYWVVHIPYLAQKPQAILIALGWAMKGDGSLIKEYSVVALQGLTLVLFIFFMWVASRGMKSLKIVGSVAGIAMFVMSLLYVAMAVTAPAITEVHIATTNITWETFIPHIDFTYITTISMLVFAVGGAEKISPYVNQTRNPGKEFPKGMLCLAVMVAVCAILGSLAMGMMFDSRNIPDDLMTNGQYYAFQKLGEYYNMGNTLMVIYAIANTLGQVAALVFSIDAPLKVLLGDADSKYIPASLCRTNASGTPVNGYFLTLVLVAILIMLPTLGIGDMNNLYKWLLNLNSVVMPLRYLWVFVAFIAVVRLAQKYKPEYVFIRNKPLAMTVGIWCFAFTAFACLTGIFPKMEAFTAEWTFQLALNVATPFVLVGLGLIFPLLARKANSK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"YCBE-MONOMER" "aliphatic sulfonate ABC transporter ATP binding subunit" ["YcbE"] "MNTARLNQGTPLLLNAVSKHYAENIVLNQLDLHIPAGQFVAVVGRSGGGKSTLLRLLAGLETPTAGDVLAGTTPLAEIQEDTRMMFQDARLLPWKSVIDNVGLGLKGQWRDAARRALAAVGLENRAGEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRLEMQDLIVSLWQEHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDIPRPRRLGSVRLAELEAEVLQRVMQRGESETRLRKQG" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 1 +"YCBE-MONOMER" "aliphatic sulfonate ABC transporter ATP binding subunit" ["YcbE"] "MNTARLNQGTPLLLNAVSKHYAENIVLNQLDLHIPAGQFVAVVGRSGGGKSTLLRLLAGLETPTAGDVLAGTTPLAEIQEDTRMMFQDARLLPWKSVIDNVGLGLKGQWRDAARRALAAVGLENRAGEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRLEMQDLIVSLWQEHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDIPRPRRLGSVRLAELEAEVLQRVMQRGESETRLRKQG" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 "YCBM-MONOMER" "aliphatic sulfonate ABC transporter membrane subunit" ["YcbM"] "MATPVKKWLLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVVTAFWTLSASGELWQHLAISSWRALIGFSIGGSLGLILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADVSAQLLERLWLRWNPAYHLKEATV" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"YCEE-MONOMER" "efflux pump MdtG" ["MdtG", "YceE", "MdtG drug MFS transporter", "MdtG multidrug efflux pump"] "MSPCENDTPINWKRNLIVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGIVFSITFLFSAIASPFWGGLADRKGRKLMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPMAGGLLADSYGLRPVFFITASVLILCFFVTLFCIREKFQPVSKKEMLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNVAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSYVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRRRRIPQVSN" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"YCEE-MONOMER" "efflux pump MdtG" ["MdtG", "YceE", "MdtG drug MFS transporter", "MdtG multidrug efflux pump"] "MSPCENDTPINWKRNLIVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGIVFSITFLFSAIASPFWGGLADRKGRKLMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPMAGGLLADSYGLRPVFFITASVLILCFFVTLFCIREKFQPVSKKEMLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNVAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSYVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRRRRIPQVSN" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "YCFU-MONOMER" "lipoprotein release complex - inner membrane subunit" ["YcfU"] "MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNILGLMPQAILSSEHGSLNPQQLPETAVKLDGVNRVAPITTGDVVLQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQTDLEPGKYNVILGEQLASQLGVNRGDQIRVMVPSASQFTPMGRIPSQRLFNVIGTFAANSEVDGYEMLVNIEDASRLMRYPAGNITGWRLWLDEPLKVDSLSQQKLPEGSKWQDWRDRKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMVFMVQGASAGIIGAILGAALGALLASQLNNLMPIIGVLLDGAALPVAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQPAEALRYE" ["CCO-PERI-BAC", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "YCFV-MONOMER" "lipoprotein release complex - ATP binding subunit" ["YcfV"] "MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSVGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLKAVGLDHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELSLMGAE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "YCFW-MONOMER" "lipoprotein release complex - inner membrane subunit" ["YcfW"] "MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMGSSVSGIALKMTDVFNANKLVRDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 1 [] {} 1 @@ -4327,19 +4327,19 @@ "YDCU-MONOMER" "putative ABC transporter membrane subunit YdcU" ["YdcU"] "MAMNVLQSPSRPGLGKVSGFFWHNPGLGLFLLLLGPLMWFGIVYFGSLLTLLWQGFYTFDDFTMSVTPELTLANIRALFNPANYDIILRTLTMAVAVTIASAILAFPMAWYMARYTSGKMKAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQWFLQHLGLEPLLTAFLTLPAVGGNTLSTSGLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIILIALYLAFVKRLGAFDAL" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "YDCV-MONOMER" "putative ABC transporter membrane subunit YdcV" ["YdcV"] "MHSERAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFPPQGLTLRWFSVAAQRSDILDAVTLSLKVAALATLIALVLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTSWSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVALLVMLVTTLPILGAWWLTREGDNGQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "YDDA-MONOMER" "ABC transporter family protein YddA" ["YddA"] "MITIPITLRMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILGVVKIQVWLNDWNNDFFNALSQKETDKLWQLVLWFPALLGIFVLISVNKTWLIKLLTIRWREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQSLSMLITFTVILWESAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEATFRTNLVQHNKQAELIALSNAESLQRQELSDNFHTIKENWHRLMNRQRWLDYWQNIYSRSLSVLPYFLLLPQFISGQINLGGLMKSRQAFMLVSNNLSWFIYKYDELAELAAVIDRLYEFHQLTEQRPTNKPKNCQHAVQVADASIRTPDNKIILENLNFHVSPGKWLLLKGYSGAGKTTLLKTLSHCWPWFKGDISSPADSWYVSQTPLIKTGLLKEIICKALPLPVDDKSLSEVLHQVGLGKLAARIHDHDRWGDILSSGEKQRIALARLILRRPKWIFLDETTSHLEEQEAIRLLRLVREKLPTSGVIMVTHQPGVWNLADDICDISAVL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"YDDO-MONOMER" "putative D,D-dipeptide ABC transporter ATP-binding subunit DdpF" ["DdpF", "YddO"] "MSDTLLTLRDVHINFPARKNWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMQMVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYTRLLLDSLPAIDKPLEEEWALRKTDLPGNRTLPQGCFFYERCPLATHGCEVRQSLAIREDGRELRCWRAL" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 -"YDDP-MONOMER" "putative D,D-dipeptide ABC transporter ATP-binding subunit DdpD" ["DdpD", "YddP"] "MTQPVLDIQQLHLSFPGFNGDVHALNNVSLQINRGEIVGLVGESGSGKSVTAMLIMRLLPTGSYCVHRGQISLLGEDVLNAREKQLRQWRGARVAMIFQEPMTALNPTRRIGLQMMDVIRHHQPISRREARAKAIDLLEEMQIPDAVEVMSRYPFELSGGMRQRVMIALAFSCEPQLIIADEPTTALDVTVQLQVLRLLKHKARASGTAVLFISHDMAVVSQLCDSVYVMYAGSVIESGVTADVIHHPRHPYTIGLLQCAPEHGVPRQLLPAIPGTVPNLTHLPDGCAFRDRCYAAGAQCENVPALTACGDNNQRCACWYPQQEVISV" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"YDDO-MONOMER" "putative D,D-dipeptide ABC transporter ATP-binding subunit DdpF" ["DdpF", "YddO"] "MSDTLLTLRDVHINFPARKNWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMQMVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYTRLLLDSLPAIDKPLEEEWALRKTDLPGNRTLPQGCFFYERCPLATHGCEVRQSLAIREDGRELRCWRAL" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 +"YDDP-MONOMER" "putative D,D-dipeptide ABC transporter ATP-binding subunit DdpD" ["DdpD", "YddP"] "MTQPVLDIQQLHLSFPGFNGDVHALNNVSLQINRGEIVGLVGESGSGKSVTAMLIMRLLPTGSYCVHRGQISLLGEDVLNAREKQLRQWRGARVAMIFQEPMTALNPTRRIGLQMMDVIRHHQPISRREARAKAIDLLEEMQIPDAVEVMSRYPFELSGGMRQRVMIALAFSCEPQLIIADEPTTALDVTVQLQVLRLLKHKARASGTAVLFISHDMAVVSQLCDSVYVMYAGSVIESGVTADVIHHPRHPYTIGLLQCAPEHGVPRQLLPAIPGTVPNLTHLPDGCAFRDRCYAAGAQCENVPALTACGDNNQRCACWYPQQEVISV" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "YDDQ-MONOMER" "putative D,D-dipeptide ABC transporter membrane subunit DdpC" ["DdpC", "YddQ"] "MMLSEETSAVRPQKQTRFNGAKLVWMLKGSPLTVTSAVIIVLMLLMMIFSPWLATHDPNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLINWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAGGKQS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "YDDR-MONOMER" "putative D,D-dipeptide ABC transporter membrane subunit DdpB" ["DdpB", "YddR"] "MTFWSILRQRCWGLVLVVAGVCVITFIISHLIPGDPARLLAGDRASDAIVENIRQQLGLDQPLYVQFYRYVSDLFHGDLGTSIRTGRPVLEELRIFFPATLELAFGALLLALLIGIPLGILSAVWRNRWLDHLVRIMAITGISTPAFWLGLGVIVLFYGHLQILPGGGRLDDWLDPPTHVTGFYLLDALLEGNGEVFFNALQHLILPALTLAFVHLGIVARQIRSAMLEQLSEDYIRTARASGLPGWYIVLCYALPNALIPSITVLGLALGDLLYGAVLTETVFAWPGMGAWVVTSIQALDFPAVMGFAVVVSFAYVLVNLVVDLLYLWIDPRIGRGGGE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "YDDS-MONOMER" "putative D,D-dipeptide ABC transporter periplasmic binding protein" ["DdpA", "YddS"] "MKRSISFRPTLLALVLATNFPVAHAAVPKDMLVIGKAADPQTLDPAVTIDNNDWTVTYPSYQRLVQYKTDGDKGSTDVEGDLASSWKASDDQKEWTFTLKDNAKFADGTPVTAEAVKLSFERLLKIGQGPAEAFPKDLKIDAPDEHTVKFTLSQPFAPFLYTLANDGASIINPAVLKEHAADDARGFLAQNTAGSGPFMLKSWQKGQQLVLVPNPHYPGNKPNFKRVSVKIIGESASRRLQLSRGDIDIADALPVDQLNALKQENKVNVAEYPSLRVTYLYLNNSKAPLNQADLRRAISWSTDYQGMVNGILSGNGKQMRGPIPEGMWGYDATAMQYNHDETKAKAEWDKVTSKPTSLTFLYSDNDPNWEPIALATQSSLNKLGIIVKLEKLANATMRDRVGKGDYDIAIGNWSPDFADPYMFMNYWFESDKKGLPGNRSFYENSEVDKLLRNALATTDQTQRTRDYQQAQKIVIDDAAYVYLFQKNYQLAMNKEVKGFVFNPMLEQVFNINTMSK" [] ["CCO-PERI-BAC"] 0 [] {} 1 -"YDEA-MONOMER" null ["YdeA", "arabinose MFS transporter"] "MTTNTVSRKVAWLRVVTLAVAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGIMLTIYAWVVALMSLPFMLMTSQVERRKLLICLFVVFIASHVLSFLSWSFTVLVISRIGVAFAHAIFWSITASLAIRMAPAGKRAQALSLIATGTALAMVLGLPLGRIVGQYFGWRMTFFAIGIGALITLLCLIKLLPLLPSEHSGSLKSLPLLFRRPALMSIYLLTVVVVTAHYTAYSYIEPFVQNIAGFSANFATALLLLLGGAGIIGSVIFGKLGNQYASALVSTAIALLLVCLALLLPAANSEIHLGVLSIFWGIAMMIIGLGMQVKVLALAPDATDVAMALFSGIFNIGIGAGALVGNQVSLHWSMSMIGYVGAVPAFAALIWSIIIFRRWPVTLEEQTQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"YDEF-MONOMER" "dipeptide exporter" ["YdeE", "YdeF"] "MNLSLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAITLVNNVTLVVLFFALINCAYSVFATVLKAWFADNLSSTSKTKIFSINYTMLNIGWTIGPPLGTLLVMQSINLPFWLAAICSAFPMLFIQIWVKRSEKIIATETGSVWSPKVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVIADGDFAEKVVAVVLPVNAAMVVTLQYSVGRRLNPANIRALMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPEMKASYFSAQSLGWLGAAINPLVSGVVLTSLPPSSLFVILALVIIAAWVLMLKGIRARPWGQPALC" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"YDEX-MONOMER" "Autoinducer-2 ABC transporter ATP binding subunit" ["YdeX", "Ego", "LsrA"] "MQTSDTRALPLLCARSVYKQYSGVNVLKGIDFTLHQGEVHALLGGNGAGKSTLMKIIAGITPADSGTLEIEGNNYVRLTPVHAHQLGIYLVPQEPLLFPSLSIKENILFGLAKKQLSMQKMKNLLAALGCQFDLHSLAGSLDVADRQMVEILRGLMRDSRILILDEPTASLTPAETERLFSRLQELLATGVGIVFISHKLPEIRQIADRISVMRDGTIALSGKTSELSTDDIIQAITPAVREKSLSASQKLWLELPGNRPQHAAGTPVLTLENLTGEGFRNVSLTLNAGEILGLAGLVGAGRTELAETLYGLRTLRGGRIMLNGKEINKLSTGERLLRGLVYLPEDRQSSGLNLDASLAWNVCALTHNLRGFWAKTAKDNATLERYRRALNIKFNQPEQAARTLSGGNQQKILIAKCLEASPQVLIVDEPTRGVDVSARNDIYQLLRSIAAQNVAVLLISSDLEEIELMADRVYVMHQGEITHSALTERDINVETIMRVAFGDSQRQEASC" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"YDEA-MONOMER" "putative exporter YdeA" ["YdeA", "arabinose MFS transporter"] "MTTNTVSRKVAWLRVVTLAVAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGIMLTIYAWVVALMSLPFMLMTSQVERRKLLICLFVVFIASHVLSFLSWSFTVLVISRIGVAFAHAIFWSITASLAIRMAPAGKRAQALSLIATGTALAMVLGLPLGRIVGQYFGWRMTFFAIGIGALITLLCLIKLLPLLPSEHSGSLKSLPLLFRRPALMSIYLLTVVVVTAHYTAYSYIEPFVQNIAGFSANFATALLLLLGGAGIIGSVIFGKLGNQYASALVSTAIALLLVCLALLLPAANSEIHLGVLSIFWGIAMMIIGLGMQVKVLALAPDATDVAMALFSGIFNIGIGAGALVGNQVSLHWSMSMIGYVGAVPAFAALIWSIIIFRRWPVTLEEQTQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"YDEF-MONOMER" "dipeptide exporter" ["YdeE", "YdeF"] "MNLSLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAITLVNNVTLVVLFFALINCAYSVFATVLKAWFADNLSSTSKTKIFSINYTMLNIGWTIGPPLGTLLVMQSINLPFWLAAICSAFPMLFIQIWVKRSEKIIATETGSVWSPKVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVIADGDFAEKVVAVVLPVNAAMVVTLQYSVGRRLNPANIRALMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPEMKASYFSAQSLGWLGAAINPLVSGVVLTSLPPSSLFVILALVIIAAWVLMLKGIRARPWGQPALC" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"YDEX-MONOMER" "Autoinducer-2 ABC transporter ATP binding subunit" ["YdeX", "Ego", "LsrA"] "MQTSDTRALPLLCARSVYKQYSGVNVLKGIDFTLHQGEVHALLGGNGAGKSTLMKIIAGITPADSGTLEIEGNNYVRLTPVHAHQLGIYLVPQEPLLFPSLSIKENILFGLAKKQLSMQKMKNLLAALGCQFDLHSLAGSLDVADRQMVEILRGLMRDSRILILDEPTASLTPAETERLFSRLQELLATGVGIVFISHKLPEIRQIADRISVMRDGTIALSGKTSELSTDDIIQAITPAVREKSLSASQKLWLELPGNRPQHAAGTPVLTLENLTGEGFRNVSLTLNAGEILGLAGLVGAGRTELAETLYGLRTLRGGRIMLNGKEINKLSTGERLLRGLVYLPEDRQSSGLNLDASLAWNVCALTHNLRGFWAKTAKDNATLERYRRALNIKFNQPEQAARTLSGGNQQKILIAKCLEASPQVLIVDEPTRGVDVSARNDIYQLLRSIAAQNVAVLLISSDLEEIELMADRVYVMHQGEITHSALTERDINVETIMRVAFGDSQRQEASC" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "YDEY-MONOMER" "Autoinducer-2 ABC transporter membrane subunit LsrC" ["YdeY", "LsrC"] "MLKFIQNNREITALLAVVLLFVLPGFLDRQYLSVQTLTMVYSSAQILILLAMGATLVMLTRNIDVSVGSITGMCAVLLGMLLNAGYSLPVACVATLLLGLLAGFFNGVLVAWLKIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPLLLGVSAIGWLTIILVAFMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAACVLGGISLLGGSGAIIGAVLGAWFLTQIDSVLVLLRIPAWWNDFIAGLVLLAVLVFDGRLRCALERNLRRQKYARFMTPPPSVKPASSGKKREAA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "YDEZ-MONOMER" "Autoinducer-2 ABC transporter membrane subunit LsrD" ["YdeZ", "LsrD"] "MRIRYGWELALAALLVIEIVAFGAINPRMLDLNMLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMPLAILLTLLLGALCGLINAGLIIYTKVNPLVITLGTLYLFAGSALLLSGMAGATGYEGIGGFPMAFTDFANLDVLGLPVPLIIFLICLLVFWLWLHKTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAVAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTAIAVLLVGYLQQGLQMAGVPNQVSSALSGALLIVVVVGRSVSLHRQQIKEWLARRANNPLP" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "YDHC-MONOMER" "purine nucleoside transporter PunC" ["YdhC", "YdhC MFS transporter", "PunC"] "MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFAAIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YDHE-MONOMER" "multidrug efflux pump MdtK" ["NorM", "MdtK", "YdhE", "NorE"] "MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRASR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"YDJE-MONOMER" "putative transporter YdjE" ["YdjE"] "MEQYDQIGARLDRLPLARFHYRIFGIISFSLLLTGFLSYSGNVVLAKLVSNGWSNNFLNAAFTSALMFGYFIGSLTGGFIGDYFGRRRAFRINLLIVGIAATGAAFVPDMYWLIFFRFLMGTGMGALIMVGYASFTEFIPATVRGKWSARLSFVGNWSPMLSAAIGVVVIAFFSWRIMFLLGGIGILLAWFLSGKYFIESPRWLAGKGQIAGAECQLREVEQQIEREKSIRLPPLTSYQSNSKVKVIKGTFWLLFKGEMLRRTLVAITVLIAMNISLYTITVWIPTIFVNSGIDVDKSILMTAVIMIGAPVGIFIAALIIDHFPRRLFGSTLLIIIAVLGYIYSIQTTEWAILIYGLVMIFFLYMYVCFASAVYIPELWPTHLRLRGSGFVNAVGRIVAVFTPYGVAALLTHYGSITVFMVLGVMLLLCALVLSIFGIETRKVSLEEISEVN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"YDJE-MONOMER" "putative transporter YdjE" ["YdjE"] "MEQYDQIGARLDRLPLARFHYRIFGIISFSLLLTGFLSYSGNVVLAKLVSNGWSNNFLNAAFTSALMFGYFIGSLTGGFIGDYFGRRRAFRINLLIVGIAATGAAFVPDMYWLIFFRFLMGTGMGALIMVGYASFTEFIPATVRGKWSARLSFVGNWSPMLSAAIGVVVIAFFSWRIMFLLGGIGILLAWFLSGKYFIESPRWLAGKGQIAGAECQLREVEQQIEREKSIRLPPLTSYQSNSKVKVIKGTFWLLFKGEMLRRTLVAITVLIAMNISLYTITVWIPTIFVNSGIDVDKSILMTAVIMIGAPVGIFIAALIIDHFPRRLFGSTLLIIIAVLGYIYSIQTTEWAILIYGLVMIFFLYMYVCFASAVYIPELWPTHLRLRGSGFVNAVGRIVAVFTPYGVAALLTHYGSITVFMVLGVMLLLCALVLSIFGIETRKVSLEEISEVN" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "YEAV-MONOMER" "putative transporter YeaV" ["YeaV"] "MVLLAMGLVIYLATSKYGNIRLGEGKPEYSTLSWLFMFICAGLGSSTLYWGVAEWAYYYQTPGLNIAPRSQQALEFSVPYSFFHWGISAWATYTLASLIMAYHFHVRKNKGLSLSGIIAAITGVRPQGPWGKLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPDNFTVQAFVILLSGGIFCLSSWIGINNGLQRLSKMVGWGAFLLPLLVLIVGPTEFITNSIINAIGLTTQNFLQMSLFTDPLGDGSFTRNWTVFYWLWWISYTPGVAMFVTRVSRGRKIKEVIWGLILGSTVGCWFFFGVMESYAIHQFINGVINVPQVLETLGGETAVQQVLMSLPAGKLFLAAYLGVMIIFLASHMDAVAYTMAATSTRNLQEGDDPDRGLRLFWCVVITLIPLSILFTGASLETMKTTVVLTALPFLVILLVKVGGFIRWLKQDYADIPAHQVEHYLPQTPVEALEKTPVLPAGTVFKGDN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YEEF-MONOMER" null ["YeeF", "PlaP"] "MSHNVTPNTSRVELRKTLTLVPVVMMGLAYMQPMTLFDTFGIVSGLTDGHVPTAYAFALIAILFTALSYGKLVRRYPSAGSAYTYAQKSISPTVGFMVGWSSLLDYLFAPMINILLAKIYFEALVPSIPSWMFVVALVAFMTAFNLRSLKSVANFNTVIVVLQVVLIAVILGMVVYGVFEGEGAGTLASTRPFWSGDAHVIPMITGATILCFSFTGFDGISNLSEETKDAERVIPRAIFLTALIGGMIFIFATYFLQLYFPDISRFKDPDASQPEIMLYVAGKAFQVGALIFSTITVLASGMAAHAGVARLMYVMGRDGVFPKSFFGYVHPKWRTPAMNIILVGAIALLAINFDLVMATALINFGALVAFTFVNLSVISQFWIREKRNKTLKDHFQYLFLPMCGALTVGALWVNLEESSMVLGLIWAAIGLIYLACVTKSFRNPVPQYEDVA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YEEO-MONOMER" "FMN/FAD exporter" ["YeeO"] "MLRHILTAKNLLSNPIFKFPNCLPFLSTVCCICRQFVGENLCSFADSPSLFEMWFHFLQLRSALNISSALRQVVHGTRWHAKRKSYKVLFWREITPLAVPIFMENACVLLMGVLSTFLVSWLGKDAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRARVATRQSLVIMTLFAVLLATLIHHFGEQIIDFVAGDATTEVKALALTYLELTVLSYPAAAITLIGSGALRGAGNTKIPLLINGSLNILNIIISGILIYGLFSWPGLGFVGAGLGLTISRYIGAVAILWVLAIGFNPALRISLKSYFKPLNFSIIWEVMGIGIPASVESVLFTSGRLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGSALGSASTIITGRRLGVGQIAQAEIQLRHVFWLSTLGLTAIAWLTAPFAGVMASFYTQDPQVKHVVVILIWLNALFMPIWSASWVLPAGFKGARDARYAMWVSMLSMWGCRVVVGYVLGIMLGWGVVGVWMGMFADWAVRAVLFYWRMVTGRWLWKYPRPEPQKCEKKPVVSE" ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 0 @@ -4349,12 +4349,12 @@ "YEHZ-MONOMER" "glycine betaine ABC transporter periplasmic binding protein OsmF" ["YehZ", "OsmF"] "MPLLKLWAGSLVMLAAVSLPLQAASPVKVGSKIDTEGALLGNIILQVLESHGVPTVNKVQLGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDSEHNKLIWLTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPAFEKAYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGVQPIYAPAPVVRESVLREYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYLKQKGWTK" [] ["CCO-PM-BAC-NEG", "CCO-PERI-BAC"] 0 [] {} 1 "YEIJ-MONOMER" "putative nucleoside transporter" ["NupX", "YeiJ"] "MDVMRSVLGMVVLLTIAFLLSVNKKKISLRTVGAALVLQVVIGGIMLWLPPGRWVAEKVAFGVHKVMAYSDAGSAFIFGSLVGPKMDTLFDGAGFIFGFRVLPAIIFVTALVSILYYIGVMGILIRILGGIFQKALNISKIESFVAVTTIFLGQNEIPAIVKPFIDRLNRNELFTAICSGMASIAGSTMIGYAALGVPVEYLLAASLMAIPGGILFARLLSPATESSQVSFNNLSFTETPPKSIIEAAATGAMTGLKIAAGVATVVMAFVAIIALINGIIGGVGGWFGFEHASLESILGYLLAPLAWVMGVDWSDANLAGSLIGQKLAINEFVAYLNFSPYLQTAGTLDAKTVAIISFALCGFANFGSIGVVVGAFSAVAPHRAPEIAQLGLRALAAATLSNLMSATIAGFFIGLA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YEIM-MONOMER" null ["PsuT", "YeiM", "PscT"] "MDIMRSVVGMVVLLAIAFLLSVNKKSISLRTVGAALLLQIAIGGIMLYFPPGKWAVEQAALGVHKVMSYSDAGSAFIFGSLVGPKMDVLFDGAGFIFAFRVLPAIIFVTALISLLYYIGVMGLLIRILGSIFQKALNISKIESFVAVTTIFLGQNEIPAIVKPFIDRMNRNELFTAICSGMASIAGSMMIGYAGMGVPIDYLLAASLMAIPGGILFARILSPATEPSQVTFENLSFSETPPKSFIEAAASGAMTGLKIAAGVATVVMAFVAIIALINGIIGGIGGWFGFANASLESIFGYVLAPLAWIMGVDWSDANLAGSLIGQKLAINEFVAYLSFSPYLQTGGTLEVKTIAIISFALCGFANFGSIGVVVGAFSAISPKRAPEIAQLGLRALAAATLSNLMSATIAGFFIGLA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"YEJA-MONOMER" "putative oligopeptide ABC transporter periplasmic binding protein YejA" [] "MIVRILLLFIALFTFGVQAQAIKESYAFAVLGEPRYAFNFNHFDYVNPAAPKGGQITLSALGTFDNFNRYALRGNPGARTEQLYDTLFTTSDDEPGSYYPLIAESARYADDYSWVEVAINPRARFHDGSPITARDVEFTFQKFMTEGVPQFRLVYKGTTVKAIAPLTVRIELAKPGKEDMLSLFSLPVFPEKYWKDHKLSDPLATPPLASGPYRVTSWKMGQNIVYSRVKDYWAANLPVNRGRWNFDTIRYDYYLDDNVAFEAFKAGAFDLRMENDAKNWATRYTGKNFDKKYIIKDEQKNESAQDTRWLAFNIQRPVFSDRRVREAITLAFDFEWMNKALFYNAWSRTNSYFQNTEYAARNYPDAAELVLLAPMKKDLPSEVFTQIYQPPVSKGDGYDRDNLLKADKLLNEAGWVLKGQQRVNATTGQPLSFELLLPASSNSQWVLPFQHSLQRLGINMDIRKVDNSQITNRMRSRDYDMMPRVWRAMPWPSSDLQISWSSEYINSTYNAPGVQSPVIDSLINQIIAAQGNKEKLLPLGRALDRVLTWNYYMLPMWYMAEDRLAWWDKFSQPAVRPIYSLGIDTWWYDVNKAAKLPSASKQGE" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 +"YEJA-MONOMER" "oligopeptide ABC transporter periplasmic binding protein YejA" [] "MIVRILLLFIALFTFGVQAQAIKESYAFAVLGEPRYAFNFNHFDYVNPAAPKGGQITLSALGTFDNFNRYALRGNPGARTEQLYDTLFTTSDDEPGSYYPLIAESARYADDYSWVEVAINPRARFHDGSPITARDVEFTFQKFMTEGVPQFRLVYKGTTVKAIAPLTVRIELAKPGKEDMLSLFSLPVFPEKYWKDHKLSDPLATPPLASGPYRVTSWKMGQNIVYSRVKDYWAANLPVNRGRWNFDTIRYDYYLDDNVAFEAFKAGAFDLRMENDAKNWATRYTGKNFDKKYIIKDEQKNESAQDTRWLAFNIQRPVFSDRRVREAITLAFDFEWMNKALFYNAWSRTNSYFQNTEYAARNYPDAAELVLLAPMKKDLPSEVFTQIYQPPVSKGDGYDRDNLLKADKLLNEAGWVLKGQQRVNATTGQPLSFELLLPASSNSQWVLPFQHSLQRLGINMDIRKVDNSQITNRMRSRDYDMMPRVWRAMPWPSSDLQISWSSEYINSTYNAPGVQSPVIDSLINQIIAAQGNKEKLLPLGRALDRVLTWNYYMLPMWYMAEDRLAWWDKFSQPAVRPIYSLGIDTWWYDVNKAAKLPSASKQGE" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "YEJB-MONOMER" "putative oligopeptide ABC transporter membrane subunit YejB" [] "MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGNAGVLPGAGGEGVRASHAQTGVGNISDSNYRGGRGLDPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVYNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWYQKITDYLWHITLPVLATVIGGFAALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDFEGR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "YEJE-MONOMER" "putative oligopeptide ABC transporter membrane subunit YejE" [] "MSRLSPVNQARWARFRHNRRGYWSLWIFLVLFGLSLCSELIANDKPLLVRYDGSWYFPLLKNYSESDFGGPLASQADYQDPWLKQRLENNGWVLWAPIRFGATSINFATNKPFPSPPSRQNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSITTLTSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLGITAFLSVAILLSLLIFIGEAVRDAFDPNKAV" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"YEJF-MONOMER" "putative oligopeptide ABC transporter ATP binding subunit YejF" [] "MTQTLLAIENLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVEYLSGDIRFHGESLLHASDQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLSIVRKLAHRVAVMQNGRCVEQNYAATLFASPTHPYTQKLLNSEPSGDPVPLPEPASTLLDVEQLQVAFPIRKGILKRIVDHNVVVKNISFTLRAGETLGLVGESGSGKSTTGLALLRLINSQGSIIFDGQPLQNLNRRQLLPIRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMHEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILTLLKSLQQKHQLAYLFISHDLHVVRALCHQVIILRQGEVVEQGPCARVFATPQQEYTRQLLALS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 -"YFEP-MONOMER" "Mn2+ : H+ symporter" ["MntA", "MntH", "YfeP"] "MTNYRVESSSGRAARKMRLALMGPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGLLLFVAAAYIVELIFSQPNLAQLGKGMVIPSLPTSEAVFLAAGVLGATIMPHVIYLHSSLTQHLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAYLTLQPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVTMLPSFIVILMGLDPTRILVMSQVLLSFGIALALVPLLIFTSDSKLMGDLVNSKRVKQTGWVIVVLVVALNIWLLVGTALGL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"YGAY-MONOMER" "putative transporter YgaY, N-terminal fragment" ["YgaY", "YgaX", "YgaY_1"] "MTKPNHELSPALIVLMSIATGLAVASNYYAQPLLDTIARNFSLSASSAGFIVTAAQLGYAAGLLFLVPLGDMFERRRLIVSMTLLAAC*LPPAVSRWR**SSVRH*PVYSQSWHKFWFRWQRRWLHRINAAKWLALL*AVCCWGSCWHGQLPDCWRISAAGAPSFGLLRC*WH*WRWHYGVVCHK*NQKPTSTTHSCWVPFSVCLSAIKFCVPARCWAA*PLPISAFSGPQWPFCLPLHLLTTAMVSLVCLDLRELPERWALVRRAVLPIRANRTTPQLSVCCCYYFHGWRSGLVTLPYWR*LSESWCWISPCRACISLTRR*FIGYILMRAIA*PQVT*LATLLAVPPVR*FQPQPGNMAVGLAFVWLARRLPWLTYWSGGEVFIVRKPQ" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"YEJF-MONOMER" "oligopeptide ABC transporter ATP binding subunit YejF" [] "MTQTLLAIENLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVEYLSGDIRFHGESLLHASDQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLSIVRKLAHRVAVMQNGRCVEQNYAATLFASPTHPYTQKLLNSEPSGDPVPLPEPASTLLDVEQLQVAFPIRKGILKRIVDHNVVVKNISFTLRAGETLGLVGESGSGKSTTGLALLRLINSQGSIIFDGQPLQNLNRRQLLPIRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMHEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILTLLKSLQQKHQLAYLFISHDLHVVRALCHQVIILRQGEVVEQGPCARVFATPQQEYTRQLLALS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"YFEP-MONOMER" "Mn(2+):H(+) symporter" ["MntA", "MntH", "YfeP", "Mn2+ : H+ symporter"] "MTNYRVESSSGRAARKMRLALMGPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGLLLFVAAAYIVELIFSQPNLAQLGKGMVIPSLPTSEAVFLAAGVLGATIMPHVIYLHSSLTQHLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAYLTLQPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVTMLPSFIVILMGLDPTRILVMSQVLLSFGIALALVPLLIFTSDSKLMGDLVNSKRVKQTGWVIVVLVVALNIWLLVGTALGL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"YGAY-MONOMER" "putative transporter YgaY, N-terminal fragment" ["YgaY", "YgaX", "YgaY_1"] "MTKPNHELSPALIVLMSIATGLAVASNYYAQPLLDTIARNFSLSASSAGFIVTAAQLGYAAGLLFLVPLGDMFERRRLIVSMTLLAAC*LPPAVSRWR**SSVRH*PVYSQSWHKFWFRWQRRWLHRINAAKWLALL*AVCCWGSCWHGQLPDCWRISAAGAPSFGLLRC*WH*WRWHYGVVCHK*NQKPTSTTHSCWVPFSVCLSAIKFCVPARCWAA*PLPISAFSGPQWPFCLPLHLLTTAMVSLVCLDLRELPERWALVRRAVLPIRANRTTPQLSVCCCYYFHGWRSGLVTLPYWR*LSESWCWISPCRACISLTRR*FIGYILMRAIA*PQVT*LATLLAVPPVR*FQPQPGNMAVGLAFVWLARRLPWLTYWSGGEVFIVRKPQ" [] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "YGFO-MONOMER" null ["XanQ", "YgfO", "xanthine NCS2 transporter"] "MSDINHAGSDLIFELEDRPPFHQALVGAITHLLAIFVPMVTPALIVGAALQLSAETTAYLVSMAMIASGIGTWLQVNRYGIVGSGLLSIQSVNFSFVTVMIALGSSMKSDGFHEELIMSSLLGVSFVGAFLVVGSSFILPYLRRVITPTVSGIVVLMIGLSLIKVGIIDFGGGFAAKSSGTFGNYEHLGVGLLVLIVVIGFNCCRSPLLRMGGIAIGLCVGYIASLCLGMVDFSSMRNLPLITIPHPFKYGFSFSFHQFLVVGTIYLLSVLEAVGDITATAMVSRRPIQGEEYQSRLKGGVLADGLVSVIASAVGSLPLTTFAQNNGVIQMTGVASRYVGRTIAVMLVILGLFPMIGGFFTTIPSAVLGGAMTLMFSMIAIAGIRIIITNGLKRRETLIVATSLGLGLGVSYDPEIFKILPASIYVLVENPICAGGLTAILLNIILPGGYRQENVLPGITSAEEMD" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YGFU-MONOMER" "urate:H+ symporter" ["UacT", "YgfU"] "MSAIDSQLPSSSGQDRPTDEVDRILSPGKLIILGLQHVLVMYAGAVAVPLMIGDRLGLSKEAIAMLISSDLFCCGIVTLLQCIGIGRFMGIRLPVIMSVTFAAVTPMIAIGMNPDIGLLGIFGATIAAGFITTLLAPLIGRLMPLFPPLVTGVVITSIGLSIIQVGIDWAAGGKGNPQYGNPVYLGISFAVLIFILLITRYAKGFMSNVAVLLGIVFGFLLSWMMNEVNLSGLHDASWFAIVTPMSFGMPIFDPVSILTMTAVLIIVFIESMGMFLALGEIVGRKLSSHDIIRGLRVDGVGTMIGGTFNSFPHTSFSQNVGLVSVTRVHSRWVCISSGIILILFGMVPKMAVLVASIPQFVLGGAGLVMFGMVLATGIRILSRCNYTTNRYNLYIVAISLGVGMTPTLSHDFFSKLPAVLQPLLHSGIMLATLSAVVLNVFFNGYQHHADLVKESVSDKDLKVRTVRMWLLMRKLKKNEHGE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YGGA-MONOMER" "L-arginine exporter" ["YggA", "ArgO"] "MFSYYFQGLALGAAMILPLGPQNAFVMNQGIRRQYHIMIALLCAISDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFKTAMSSNIELASAEVMKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQLDVEPKRWFALGTISASFLWFFGLALLAAWLAPRLRTAKAQRIINLVVGCVMWFIALQLARDGIAHAQALFS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -4362,17 +4362,17 @@ "YGJE-MONOMER" null ["YgjC", "YgjE", "TtdT", "TtdT tartrate/succinate DASS transporter"] "MKPSTEWWRYLAPLAVIAIIALLPVPAGLENHTWLYFAVFTGVIVGLILEPVPGAVVAMVGISIIAILSPWLLFSPEQLAQPGFKFTAKSLSWAVSGFSNSVIWLIFAAFMFGTGYEKTGLGRRIALILVKKMGHRTLFLGYAVMFSELILAPVTPSNSARGAGIIYPIIRNLPPLYQSQPNDSSSRSIGSYIMWMGIVADCVTSAIFLTAMAPNLLLIGLMKSASHATLSWGDWFLGMLPLSILLVLLVPWLAYVLYPPVLKSGDQVPRWAETELQAMGPLCSREKRMLGLMVGALVLWIFGGDYIDAAMVGYSVVALMLLLRIISWDDIVSNKAAWNVFFWLASLITLATGLNNTGFISWFGKLLAGSLSGYSPTMVMVALIVVFYLLRYFFASATAYTSALAPMMIAAALAMPEIPLPVFCLMVGAAIGLGSILTPYATGPSPIYYGSGYLPTADYWRLGAIFGLIFLVLLVITGLLWMPVVLL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YGJI-MONOMER" "putative transporter YgjI" ["YgjI"] "MSDTKRNTIGKFGLLSLTFAAVYSFNNVINNNIELGLASAPMFFLATIFYFIPFCLIIAEFVSLNKNSEAGVYAWVKSSLGGRWAFITAYTYWFVNLFFFTSLLPRVIAYASYAFLGYEYIMTPVATTIISMVLFAFSTWVSTNGAKMLGPITSVTSTLMLLLTLSYILLAGTALVGGVQPADAITVDAMIPNFNWAFLGVTTWIFMAAGGAESVAVYVNDVKGGSKSFVKVIILAGIFIGVLYSVSSVLINVFVSSKELKFTGGSVQVFHGMAAYFGLPEALMNRFVGLVSFTAMFGSLLMWTATPVKIFFSEIPEGIFGKKTVELNENGVPARAAWIQFLIVIPLMIIPMLGSNTVQDLMNTIINMTAAASMLPPLFIMLAYLNLRAKLDHLPRDFRMGSRRTGIIVVSMLIAIFAVGFVASTFPTGANILTIIFYNVGGIVIFLGFAWWKYSKYIKGLTAEERHIEATPASNVD" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YGJU-MONOMER" null ["YgjU", "SstT", "serine/threonine transporter"] "MTTQRSPGLFRRLAHGSLVKQILVGLVLGILLAWISKPAAEAVGLLGTLFVGALKAVAPILVLMLVMASIANHQHGQKTNIRPILFLYLLGTFSAALAAVVFSFAFPSTLHLSSSAGDISPPSGIVEVMRGLVMSMVSNPIDALLKGNYIGILVWAIGLGFALRHGNETTKNLVNDMSNAVTFMVKLVIRFAPIGIFGLVSSTLATTGFSTLWGYAQLLVVLVGCMLLVALVVNPLLVWWKIRRNPFPLVLLCLRESGVYAFFTRSSAANIPVNMALCEKLNLDRDTYSVSIPLGATINMAGAAITITVLTLAAVNTLGIPVDLPTALLLSVVASLCACGASGVAGGSLLLIPLACNMFGISNDIAMQVVAVGFIIGVLQDSCETALNSSTDVLFTAAACQAEDDRLANSALRN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 1 [] {} 0 -"YHAO-MONOMER" "L-cysteine importer" ["CyuP", "DlsT", "YhaO"] "MEIASNKGVIADASTPAGRAGMSESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKISTGMVLTKLLVVAALGVSMVGMWHLYNVGSLPPLGLLVKNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGILFVTVFFYAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAAWVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKINENLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYKGMSLYLIIVTGLLLCVSPFLAFS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"YHAO-MONOMER" "L-cysteine importer" ["CyuP", "DlsT", "YhaO"] "MEIASNKGVIADASTPAGRAGMSESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKISTGMVLTKLLVVAALGVSMVGMWHLYNVGSLPPLGLLVKNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGILFVTVFFYAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAAWVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKINENLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYKGMSLYLIIVTGLLLCVSPFLAFS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "YHAU-MONOMER" "galactarate/D-glucarate transporter GarP" ["GarP", "YhaU"] "MILDTVDEKKKGVHTRYLILLIIFIVTAVNYADRATLSIAGTEVAKELQLSAVSMGYIFSAFGWAYLLMQIPGGWLLDKFGSKKVYTYSLFFWSLFTFLQGFVDMFPLAWAGISMFFMRFMLGFSEAPSFPANARIVAAWFPTKERGTASAIFNSAQYFSLALFSPLLGWLTFAWGWEHVFTVMGVIGFVLTALWIKLIHNPTDHPRMSAEELKFISENGAVVDMDHKKPGSAAASGPKLHYIKQLLSNRMMLGVFFGQYFINTITWFFLTWFPIYLVQEKGMSILKVGLVASIPALCGFAGGVLGGVFSDYLIKRGLSLTLARKLPIVLGMLLASTIILCNYTNNTTLVVMLMALAFFGKGFGALGWPVISDTAPKEIVGLCGGVFNVFGNVASIVTPLVIGYLVSELHSFNAALVFVGCSALMAMVCYLFVVGDIKRMELQK" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"YHBG-MONOMER" "lipopolysaccharide transport system ATP binding protein LptB" ["YhbG"] "MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVYLGEDFRL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 1 [] {} 1 +"YHBG-MONOMER" "lipopolysaccharide transport system ATP binding protein LptB" ["YhbG"] "MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVYLGEDFRL" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 1 [] {} 1 "YHBN-MONOMER" "lipopolysaccharide transport system protein LptA" ["YhbN"] "MKFKTNKLSLNLVLASSLLAASIPAFAVTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVPSQLQDKNNKGQTPAQKKGN" ["CCO-OUTER-MEM", "CCO-PERI-BAC"] ["CCO-OUTER-MEM", "CCO-PERI-BAC"] 0 [] {} 1 "YHCL-MONOMER" "putative transporter DcuD" ["YhcL", "DcuD"] "MFGIIISVIVLITMGYLILKNYKPQVVLAAAGIFLMMCGVWLGFGGVLDPTKSSGYLIVDIYNEILRMLSNRIAGLGLSIMAVGGYARYMERIGASRAMVSLLSRPLKLIRSPYIILSATYVIGQIMAQFITSASGLGMLLMVTLFPTLVSLGVSRLSAVAVIATTMSIEWGILETNSIFAAQVAGMKIATYFFHYQLPVASCVIISVAISHFFVQRAFDKKDKNINHEQAEQKALDNVPPLYYAILPVMPLILMLGSLFLAHVGLMQSELHLVVVMLLSLTVTMFVEFFRKHNLRETMDDVQAFFDGMGTQFANVVTLVVAGEIFAKGLTTIGTVDAVIRGAEHSGLGGIGVMIIMALVIAICAIVMGSGNAPFMSFASLIPNIAAGLHVPAVVMIMPMHFATTLARAVSPITAVVVVTSGIAGVSPFAVVKRTAIPMAVGFVVNMIATITLFY" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YHDW-MONOMER" "putative ABC transporter periplasmic binding protein YhdW" ["YhdW"] "MKKMMIATLAAASVLLAVANQALLARRLMPFRKKVLCNAGSVMDYLGSLMPMLTVSFQVLMLIFVVVLPLLYLVTTRK*NIPRSLQKNASPLYSQGRWICSPVIRPGLHLAMPGWEWHLPASLITTALAS*RTIKRG*KARKNWMALPSVFRRVLIPNSTSPTTSRQTI*STHR*LSIALTNQRRHWNLVAAIRWPRINHNCMPCASN*ATQLNGLSYRKLSQKNRLVR*FVVAMMNGSRLYAGRFSPC*MLKRWASIPRTSMKKRLIQQRLIWHICWVKKAITARI*SWIINGPITSSNRWVTTRKFLSVT*VQKAR*KLNVGKIISGITAVFSTHRPC" [] ["CCO-PERI-BAC"] 0 [] {} 1 "YHDX-MONOMER" "putative ABC transporter membrane subunit YhdX" ["YhdX"] "MSHRRSTVKGSLSFANPTVRAWLFQILAVVAVVGIVGWLFHNTVTNLNNRGITSGFAFLDRGAGFGIVQHLIDYQQGDTYGRVFIVGLLNTLLVSALCIVFASVLGFFIGLARLSDNWLLRKLSTIYIEIFRNIPPLLQIFFWYFAVLRNLPGPRQAVSAFDLAFLSNRGLYIPSPQLGDGFIAFILAVVMAIVLSVGLFRFNKTYQIKTGQLRRTWPIAAVLIIGLPLLAQWLFGAALHWDVPALRGFNFRGGMVLIPELAALTLALSVYTSAFIAEIIRAGIQAVPYGQHEAARSLGLPNPVTLRQVIIPQALRVIIPPLTSQYLNIVKNSSLAAAIGYPDMVSLFAGTVLNQTGQAIETIAMTMSVYLIISLTISLLMNIYNRRIAIVER" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "YHDY-MONOMER" "putative ABC transporter membrane subunit YhdY" ["YhdY"] "MTKVLLSHPPRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWLMWELIPPLLNWAFLQANWVGSTRADCTKAGACWVFIHERFGQFMYGLYPHDQRWRINLALLIGLVSIAPMFWKILPHRGRYIAAWAVIYPLIVWWLMYGGFFALERVETRQWGGLTLTLIIASVGIAGALPWGILLALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVMLPLFMAEGTSIDKLIRALVGVILFQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGLFDLFSSVQQATVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSQYLEKRFNTGRTPH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"YHDZ-MONOMER" "putative ABC transporter ATP-binding subunit YhdZ" ["YhdZ"] "MSQILLQPANAMITLENVNKWYGQFHVLKNINLTVQPGERIVLCGPSGSGKSTTIRCINHLEEHQQGRIVVDGIELNEDIRNIERVRQEVGMVFQHFNLFPHLTVLQNCTLAPIWVRKMPKKEAEDLAVHYLERVRIAEHAHKFPGQISGGQQQRVAIARSLCMKPKIMLFDEPTSALDPEMVKEVLDTMIGLAQSGMTMLCVTHEMGFARTVADRVIFMDRGEIVEQAAPDEFFAHPKSERTRAFLSQVIH" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE", "CCO-CYTOSOL"] 0 [] {} 1 +"YHDZ-MONOMER" "putative ABC transporter ATP-binding subunit YhdZ" ["YhdZ"] "MSQILLQPANAMITLENVNKWYGQFHVLKNINLTVQPGERIVLCGPSGSGKSTTIRCINHLEEHQQGRIVVDGIELNEDIRNIERVRQEVGMVFQHFNLFPHLTVLQNCTLAPIWVRKMPKKEAEDLAVHYLERVRIAEHAHKFPGQISGGQQQRVAIARSLCMKPKIMLFDEPTSALDPEMVKEVLDTMIGLAQSGMTMLCVTHEMGFARTVADRVIFMDRGEIVEQAAPDEFFAHPKSERTRAFLSQVIH" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 "YHES-MONOMER" "putative ATP-binding protein YheS" ["YheS"] "MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGSWQLAWVNQETPALPQAALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWSIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSMFEYTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFRFSFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEYLRADESPIQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIEFEGALVVVSHDRHLLRSTTDDLYLVHDRKVEPFDGDLEDYQQWLSDVQKQENQTDEAPKENANSAQARKDQKRREAELRAQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQMLLEGQSN" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 0 -"YHFC-MONOMER" "putative transporter TsgA" ["GutS", "YhfH", "TsgA", "YhfC"] "MTNSNRIKLTWISFLSYALTGALVIVTGMVMGNIADYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIVPLKTQLRFGFLLMVLAVAGLMFSHSLALFSAAMFILGVVSGITMSIGTFLVTQMYEGRQRGSRLLFTDSFFSMAGMIFPMIAAFLLARSIEWYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILGQLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAGLAAILMYVFNTGTPAHMAWSILALGFFSSAIYTTIITLGSQQTKVPSPKLVNFVLTCGTIGTMLTFVVTGPIVEHSGPQAALLTANGLYAVVFVMCFLLGFVSRHRQHNTLTSH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"YHFC-MONOMER" "putative transporter TsgA" ["GutS", "YhfH", "TsgA", "YhfC"] "MTNSNRIKLTWISFLSYALTGALVIVTGMVMGNIADYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIVPLKTQLRFGFLLMVLAVAGLMFSHSLALFSAAMFILGVVSGITMSIGTFLVTQMYEGRQRGSRLLFTDSFFSMAGMIFPMIAAFLLARSIEWYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCYILGQLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTVLAGLAAILMYVFNTGTPAHMAWSILALGFFSSAIYTTIITLGSQQTKVPSPKLVNFVLTCGTIGTMLTFVVTGPIVEHSGPQAALLTANGLYAVVFVMCFLLGFVSRHRQHNTLTSH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "YHFM-MONOMER" "fructoselysine/psicoselysine transporter" ["YhfM", "FrlA"] "MGSQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDDYKPLWRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKRSRQLNALS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YHHJ-MONOMER" "ABC transporter family protein YhhJ" ["YhhJ"] "MRHLRNIFNLGIKELRSLLGDKAMLTLIVFSFTVSVYSSATVTPGSLNLAPIAIADMDQSQLSNRIVNSFYRPWFLPPEMITADEMDAGLDAGRYTFAINIPPNFQRDVLAGRQPDIQVNVDATRMSQAFTGNGYIQNIINGEVNSFVARYRDNSEPLVSLETRMRFNPNLDPAWFGGVMAIINNITMLAIVLTGSALIREREHGTVEHLLVMPITPFEIMMAKIWSMGLVVLVVSGLSLVLMVKGVLGVPIEGSIPLFMLGVALSLFATTSIGIFMGTIARSMPQLGLLVILVLLPLQMLSGGSTPRESMPQMVQDIMLTMPTTHFVSLAQAILYRGAGFEIVWPQFLTLMAIGGAFFTIALLRFRKTIGTMA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YHHO-MONOMER" "Zn2+/Cd2+/Pb2+ exporting P-type ATPase" ["YhhO", "ZntA"] "MSTPDNHGKKAPQFAAFKPLTTVQNANDCCCDGACSSTPTLSENVSGTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLRDEQAAEEPQASRLKENLPLITLIVMMAISWGLEQFNHPFGQLAFIATTLVGLYPIARQALRLIKSGSYFAIETLMSVAAIGALFIGATAEAAMVLLLFLIGERLEGWAASRARQGVSALMALKPETATRLRKGEREEVAINSLRPGDVIEVAAGGRLPADGKLLSPFASFDESALTGESIPVERATGDKVPAGATSVDRLVTLEVLSEPGASAIDRILKLIEEAEERRAPIERFIDRFSRIYTPAIMAVALLVTLVPPLLFAASWQEWIYKGLTLLLIGCPCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRVTQVAFDKTGTLTVGKPRVTAIHPATGISESELLTLAAAVEQGATHPLAQAIVREAQVAELAIPTAESQRALVGSGIEAQVNGERVLICAAGKHPADAFTGLINELESAGQTVVLVVRNDDVLGVIALQDTLRADAATAISELNALGVKGVILTGDNPRAAAAIAGELGLEFKAGLLPEDKVKAVTELNQHAPLAMVGDGINDAPAMKAAAIGIAMGSGTDVALETADAALTHNHLRGLVQMIELARATHANIRQNITIALGLKGIFLVTTLLGMTGLWLAVLADTGATVLVTANALRLLRRR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {"ZN+2": 2, "MG+2": 1} 0 @@ -4381,14 +4381,14 @@ "YHIP-MONOMER" "dipeptide/tripeptide:H+ symporter DtpB" ["DtpB", "YhiP"] "MNTTTPMGMLQQPRPFFMIFFVELWERFGYYGVQGVLAVFFVKQLGFSQEQAFVTFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGALVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLIALSLAPVIADRFGYSVTYNLCGAGLIIALLVYIACRGMVKDIGSEPDFRPMSFSKLLYVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFRQAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVLASPILAGIYTHLGNKGKDLSMPMKFTLGMFMCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMLLMVPWLKRMIATPESH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YHIV-MONOMER" "multidrug efflux pump RND permease MdtF" ["YhiV", "MdtF"] "MANYFIDRPVFAWVLAIIMMLAGGLAIMNLPVAQYPQIAPPTITVSATYPGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQNKLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRTAGVGSVQLFGSEYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQQLNASIIVQTRLQTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATILKAAPEGGHKPNALFARFNTLFEKSTQHYTDSTRSLLRCTGRYMVVYLLICAGMAVLFLRTPTSFLPEEDQGVFMTTAQLPSGATMVNTTKVLQQVTDYYLTKEKDNVQSVFTVGGFGFSGQGQNNGLAFISLKPWSERVGEENSVTAIIQRAMIALSSINKAVVFPFNLPAVAELGTASGFDMELLDNGNLGHEKLTQARNELLSLAAQSPNQVTGVRPNGLEDTPMFKVNVNAAKAEAMGVALSDINQTISTAFGSSYVNDFLNQGRVKKVYVQAGTPFRMLPDNINQWYVRNASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLPAGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGALLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKEGKTPIEAIIEAARMRLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIYFVPVFFVVVEHLFARFKKA" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "YHJE-MONOMER" "putative transporter YhjE" ["YhjE"] "MQATATTLDHEQEYTPINSRNKVLVASLIGTAIEFFDFYIYATAAVIVFPHIFFPQGDPTAATLQSLATFAIAFVARPIGSAVFGHFGDRVGRKATLVASLLTMGISTVVIGLLPGYATIGIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRALYGSFPQLGAPIGFFFANGTFLLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVSLHESPVFEKVAKAKKQVKIPLGTLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTFSTAAAPVGLGLPRNEVLWMLMMAVIGFGVMVPVAGLLADAFGRRKSMVIITTLIILFALFAFNPLLGSGNPILVFAFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVASILGASVAPYIAAWLQTNYGLGAVGLYLAAMAGLTLIALLLTHETRHQSL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"YHJV-MONOMER" "putative transporter YhjV" ["YhjV"] "MQHNTLSKHNQKLPFTRYDFGWVLLCIGMAIGAGTVLMPVQIGLKGIWVFITAAIIAYPATWVVQDIYLKTLSESDSCNDYTDIISHYLGKNWGIFLGVIYFLMIIHGIFIYSLSVVFDSASYLKTFGLTDADLSQSLLYKVAIFAVLVAIASGGERLLFKISGPMVVVKVGIIVVFGFAMIPHWNFANITAFPQASVFFRDVLLTIPFCFFSAVFIQVLNPMNIAYRKREADKVLATRLALRTHRISYITLIAVILFFAFSFTFSISHEEAVSAFEQNISALALAAQVIPGHIIHITSTVLNIFAVLTAFFGIYLGFHEAIKGIILNLLSRIIDTKKINSRVLTLAICAFIVITLTIWVSFRVSVLVFFQLGSPLYGIVSCLIPFFLIYKVAQLEKLRGFKAWLILLYGILLCLSPLLKLIE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"YHJV-MONOMER" "putative transporter YhjV" ["YhjV"] "MQHNTLSKHNQKLPFTRYDFGWVLLCIGMAIGAGTVLMPVQIGLKGIWVFITAAIIAYPATWVVQDIYLKTLSESDSCNDYTDIISHYLGKNWGIFLGVIYFLMIIHGIFIYSLSVVFDSASYLKTFGLTDADLSQSLLYKVAIFAVLVAIASGGERLLFKISGPMVVVKVGIIVVFGFAMIPHWNFANITAFPQASVFFRDVLLTIPFCFFSAVFIQVLNPMNIAYRKREADKVLATRLALRTHRISYITLIAVILFFAFSFTFSISHEEAVSAFEQNISALALAAQVIPGHIIHITSTVLNIFAVLTAFFGIYLGFHEAIKGIILNLLSRIIDTKKINSRVLTLAICAFIVITLTIWVSFRVSVLVFFQLGSPLYGIVSCLIPFFLIYKVAQLEKLRGFKAWLILLYGILLCLSPLLKLIE" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "YHJX-MONOMER" "putative transporter YhjX" ["YhjX"] "MTPSNYQRTRWLTLIGTIITQFALGSVYTWSLFNGALSAKLDAPVSQVAFSFGLLSLGLAISSSVAGKLQERFGVKRVTMASGILLGLGFFLTAHSDNLMMLWLSAGVLVGLADGAGYLLTLSNCVKWFPERKGLISAFAIGSYGLGSLGFKFIDTQLLETVGLEKTFVIWGAIALLMIVFGATLMKDAPKQEVKTSNGVVEKDYTLAESMRKPQYWMLAVMFLTACMSGLYVIGVAKDIAQSLAHLDVVSAANAVTVISIANLSGRLVLGILSDKIARIRVITIGQVISLVGMAALLFAPLNAVTFFAAIACVAFNFGGTITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSICGSIIASLFGGFYVTFYVIFALLILSLALSTTIRQPEQKMLREAHGSL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YICE-MONOMER" null ["YicE", "XanP", "xanthine NCS2 transporter"] "MSVSTLESENAQPVAQTQNSELIYRLEDRPPLPQTLFAACQHLLAMFVAVITPALLICQALGLPAQDTQHIISMSLFASGVASIIQIKAWGPVGSGLLSIQGTSFNFVAPLIMGGTALKTGGADVPTMMAALFGTLMLASCTEMVISRVLHLARRIITPLVSGVVVMIIGLSLIQVGLTSIGGGYAAMSDNTFGAPKNLLLAGVVLALIILLNRQRNPYLRVASLVIAMAAGYALAWFMGMLPESNEPMTQELIMVPTPLYYGLGIEWSLLLPLMLVFMITSLETIGDITATSDVSEQPVSGPLYMKRLKGGVLANGLNSFVSAVFNTFPNSCFGQNNGVIQLTGVASRYVGFVVALMLIVLGLFPAVSGFVQHIPEPVLGGATLVMFGTIAASGVRIVSREPLNRRAILIIALSLAVGLGVSQQPLILQFAPEWLKNLLSSGIAAGGITAIVLNLIFPPEKQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YICJ-MONOMER" "putative xyloside transporter YicJ" ["YicJ"] "MKSEVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYDAAEKAQNSATISIIIALFTIVPAICYLLSAIIAKRYYSLTTHNLKTVMEQLAQGKRRCQQQFTSQEVQN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YICM-MONOMER" "purine ribonucleoside exporter" ["YicM", "NepI", "NepI MFS ribonucleoside transporter"] "MSEFIAENRGADAITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFIGTSLSSFILKRSVKLALAGAPLILAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALLVTAKVKMKKS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YIDC" "membrane protein insertase YidC" ["YidC"] "MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALHTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYTANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKS" ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "YIDK-MONOMER" "putative transporter YidK" ["YidK"] "MNSLQILSFVGFTLLVAVITWWKVRKTDTGSQQGYFLAGRSLKAPVIAASLMLTNLSTEQLVGLSGQAYKSGMSVMGWEVTSAVTLIFLALIFLPRYLKRGIATIPDFLEERYDKTTRIIIDFCFLIATGVCFLPIVLYSGALALNSLFHVGESLQISHGAAIWLLVILLGLAGILYAVIGGLRAMAVADSINGIGLVIGGLMVPVFGLIAMGKGSFMQGIEQLTTVHAEKLNSIGGPTDPLPIGAAFTGLILVNTFYWCTNQGIVQRTLASKSLAEGQKGALLTAVLKMLDPLVLVLPGLIAFHLYQDLPKADMAYPTLVNNVLPVPMVGFFGAVLFGAVISTFNGFLNSASTLFSMGIYRRIINQNAEPQQLVTVGRKFGFFIAIVSVLVAPWIANAPQGLYSWMKQLNGIYNVPLVTIIIMGFFFPRIPALAAKVAMGIGIISYITINYLVKFDFHFLYVLACTFCINVVVMLVIGFIKPRATPFTFKDAFAVDMKPWKNVKIASIGILFAMIGVYAGLAEFGGYGTRWLAMISYFIAAVVIVYLIFDSWRHRHDPAVTFTPDGKDSL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"YIDT-MONOMER" "D-galactonate:H+ symporter" ["YidT", "DgoT"] "MDIPVNAAKPGRRRYLTLVMIFITVVICYVDRANLAVASAHIQEEFGITKAEMGYVFSAFAWLYTLCQIPGGWFLDRVGSRVTYFIAIFGWSVATLFQGFATGLMSLIGLRAITGIFEAPAFPTNNRMVTSWFPEHERASAVGFYTSGQFVGLAFLTPLLIWIQEMLSWHWVFIVTGGIGIIWSLIWFKVYQPPRLTKGISKAELDYIRDGGGLVDGDAPVKKEARQPLTAKDWKLVFHRKLIGVYLGQFAVASTLWFFLTWFPNYLTQEKGITALKAGFMTTVPFLAAFVGVLLSGWVADLLVRKGFSLGFARKTPIICGLLISTCIMGANYTNDPMMIMCLMALAFFGNGFASITWSLVSSLAPMRLIGLTGGVFNFAGGLGGITVPLVVGYLAQGYGFAPALVYISAVALIGALSYILLVGDVKRVG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"YIDT-MONOMER" "D-galactonate:H+ symporter" ["YidT", "DgoT"] "MDIPVNAAKPGRRRYLTLVMIFITVVICYVDRANLAVASAHIQEEFGITKAEMGYVFSAFAWLYTLCQIPGGWFLDRVGSRVTYFIAIFGWSVATLFQGFATGLMSLIGLRAITGIFEAPAFPTNNRMVTSWFPEHERASAVGFYTSGQFVGLAFLTPLLIWIQEMLSWHWVFIVTGGIGIIWSLIWFKVYQPPRLTKGISKAELDYIRDGGGLVDGDAPVKKEARQPLTAKDWKLVFHRKLIGVYLGQFAVASTLWFFLTWFPNYLTQEKGITALKAGFMTTVPFLAAFVGVLLSGWVADLLVRKGFSLGFARKTPIICGLLISTCIMGANYTNDPMMIMCLMALAFFGNGFASITWSLVSSLAPMRLIGLTGGVFNFAGGLGGITVPLVVGYLAQGYGFAPALVYISAVALIGALSYILLVGDVKRVG" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "YIDY-MONOMER" "efflux pump MdtL" ["MdtL", "YidY", "YidY drug MFS transporter", "MdtL multidrug efflux pump"] "MSRFLICSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKVADRSGRKPVAIPGAALFIIASVFCSLAETSTLFLAGRFLQGLGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFWAMAMMGIAVLMLSLFILKETRPAAPAASDKPRENSESLLNRFFLSRVVITTLSVSVILTFVNTSPVLLMEIMGFERGEYATIMALTAGVSMTVSFSTPFALGIFKPRTLMITSQVLFLAAGITLAVSPSHAVSLFGITLICAGFSVGFGVAMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVVGIGAWNMLIGILIACSIVSLLLIMFVAPGRPVAAHEEIHHHA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YIEO-MONOMER" "putative transporter HsrA" ["YieO", "HsrA", "multidrug efflux pump HsrA"] "MSDKKKRSMAGLPWIAAMAFFMQALDATILNTALPAIAHSLNRSPLAMQSAIISYTLTVAMLIPVSGWLADRFGTRRIFTLAVSLFTLGSLACALSNSLPQLVVFRVIQGIGGAMMMPVARLALLRAYPRNELLPVLNFVAMPGLVGPILGPVLGGVLVTWATWHWIFLINIPIGIAGLLYARKHMPNFTTARRRFDITGFLLFGLSLVLFSSGIELFGEKIVASWIALTVIVTSIGLLLLYILHARRTPNPLISLDLFKTRTFSIGIVGNIATRLGTGCVPFLMPLMLQVGFGYQAFIAGCMMAPTALGSIIAKSMVTQVLRRLGYRHTLVGITVIIGLMIAQFSLQSPAMAIWMLILPLFILGMAMSTQFTAMNTITLADLTDDNASSGNSVLAVTQQLSISLGVAVSAAVLRVYEGMEGTTTVEQFHYTFITMGIITVASAAMFMLLKTTDGNNLIKRQRKSKPNRVPSESE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YIFK-MONOMER" "threonine/serine:H+ symporter ThrP" ["ThrP", "YifK", "threonine/serine transporter"] "MADNKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSIAILLIGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAAIASHPFRSILFPWANYVTMAFLICVLIGMYFNEDTRMSLFVGIIFMLAVTAIYKVFGLNRHGKAHKLEE" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -4397,11 +4397,11 @@ "YIHP-MONOMER" "putative 2,3-dihydroxypropane-1-sulfonate export protein" ["YihP"] "MSHITTEDPATLRLPFKEKLSYGIGDLASNILLDIGTLYLLKFYTDVLGLPGTYGGIIFLISKFFTAFTDMGTGIMLDSRRKIGPKGKFRPFILYASFPVTLLAIANFVGTPFDVTGKTVMATILFMLYGLFFSMMNCSYGAMVPAITKNPNERASLAAWRQGGATLGLLLCTVGFVPVMNLIEGNQQLGYIFAATLFSLFGLLFMWICYSGVKERYVETQPANPAQKPGLLQSFRAIAGNRPLFILCIANLCTLGAFNVKLAIQVYYTQYVLNDPILLSYMGFFSMGCIFIGVFLMPASVRRFGKKKVYIGGLLIWVLGDLLNYFFGGGSVSFVAFSCLAFFGSAFVNSLNWALVSDTVEYGEWRTGVRSEGTVYTGFTFFRKVSQALAGFFPGWMLTQIGYVPNVAQADHTIEGLRQLIFIYPSALAVVTIVAMGCFYSLNEKMYVRIVEEIEARKRTA" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YIIP-MONOMER" "Zn2+/Fe2+/Cd2+ exporter" ["YiiP", "FieF"] "MNQSYGRLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQDPCSVVPREGKRSMLS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "YJCE-MONOMER" "putative transporter YjcE" ["YjcE"] "MEIFFTILIMTLVVSLSGVVTRVMPFQIPLPLMQIAIGALLAWPTFGLHVEFDPELFLVLFIPPLLFADGWKTPTREFLEHGREIFGLALALVVVTVVGIGFLIYWVVPGIPLIPAFALAAVLSPTDAVALSGIVGEGRIPKKIMGILQGEALMNDASGLVSLKFAVAVAMGTMIFTVGGATVEFMKVAIGGILAGFVVSWLYGRSLRFLSRWGGDEPATQIVLLFLLPFASYLIAEHIGVSGILAAVAAGMTITRSGVMRRAPLAMRLRANSTWAMLEFVFNGMVFLLLGLQLPGILETSLMAAEIDPNVEIWMLFTNIILIYAALMLVRFGWLWTMKKFSNRFLKKKPMEFGSWTTREILIASFAGVRGAITLAGVLSIPLLLPDGNVFPARYELVFLAAGVILFSLFVGVVMLPILLQHIEVADHSQQLKEERIARAATAEVAIVAIQKMEERLAADTEENIDNQLLTEVSSRVIGNLRRRADGRNDVESSVQEENLERRFRLAALRSERAELYHLRATREISNETLQKLLHDLDLLEALLIEENQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"YJCG-MONOMER" "acetate/glycolate:cation symporter" ["YjcG", "ActP"] "MKRVLTALAATLPFAANAADAISGAVERQPTNWQAIIMFLIFVVFTLGITYWASKRVRSRSDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQGPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLNYHIAVVLVGVLMMMYVLFGGMLATTWVQIIKAVLLLFGASFMAFMVMKHVGFSFNNLFSEAMAVHPKGVDIMKPGGLVKDPISALSLGLGLMFGTAGLPHILMRFFTVSDAREARKSVFYATGFMGYFYILTFIIGFGAIMLVGANPEYKDAAGHLIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYANVFKKGATEREELRVSKITVLILGVIAIILGVLFENQNIAFMVGLAFAIAASCNFPIILLSMYWSKLTTRGAMMGGWLGLITAVVLMILGPTIWVQILGHEKAIFPYEYPALFSITVAFLGIWFFSATDNSAEGARERELFRAQFIRSQTGFGVEQGRAH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"YJCH-MONOMER" "DUF485 domain-containing inner membrane protein YjcH" ["YjcH"] "MNGTIYQRIEDNAHFRELVEKRQRFATILSIIMLAVYIGFILLIAFAPGWLGTPLNPNTSVTRGIPIGVGVIVISFVLTGIYIWRANGEFDRLNNEVLHEVQAS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"YJCQ-MONOMER" "putative multidrug efflux pump subunit MdtO" ["MdtO", "YjcQ", "SdsQ"] "MSALNSLPLPVVRLLAFFHEELSERRPGRVPQTVQLWVGCLLVILISMTFEIPFVALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWSYGEPLIRLIIAGPILMGCMFLMRTHRLGLVFFAVAIVAIYGQTFPAMLDYPEVVVRLTLWCIVVGLYPTLLMTLIGVLWFPSRAISQMHQALNDRLDDAISHLTDSLAPLPETRIEREALALQKLNVFCLADDANWRTQNAWWQSCVATVTYIYSTLNRYDPTSFADSQAIIEFRQKLASEINKLQHAVAEGQCWQSDWRISESEAMAARECNLENICQTLLQLGQMDPNTPPTPAAKPPSMAADAFTNPDYMRYAVKTLLACLICYTFYSGVDWEGIHTCMLTCVIVANPNVGSSYQKMVLRFGGAFCGAILALLFTLLVMPWLDNIVELLFVLAPIFLLGAWIATSSERSSYIGTQMVVTFALATLENVFGPVYDLVEIRDRALGIIIGTVVSAVIYTFVWPESEARTLPQKLAGTLGMLSKVMRIPRQQEVTALRTYLQIRIGLHAAFNACEEMCQRVALERQLDSEERALLIERSQTVIRQGRDLLHAWDATWNSAQALDNALQPDRAGQFADALEKYAAGLATALSRSPQITLEETPASQAILPTLLKQEQHVCQLFARLPDWTAPALTPATEQAQGATQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"YJCG-MONOMER" "acetate/glycolate:cation symporter" ["YjcG", "ActP"] "MKRVLTALAATLPFAANAADAISGAVERQPTNWQAIIMFLIFVVFTLGITYWASKRVRSRSDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQGPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLNYHIAVVLVGVLMMMYVLFGGMLATTWVQIIKAVLLLFGASFMAFMVMKHVGFSFNNLFSEAMAVHPKGVDIMKPGGLVKDPISALSLGLGLMFGTAGLPHILMRFFTVSDAREARKSVFYATGFMGYFYILTFIIGFGAIMLVGANPEYKDAAGHLIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYANVFKKGATEREELRVSKITVLILGVIAIILGVLFENQNIAFMVGLAFAIAASCNFPIILLSMYWSKLTTRGAMMGGWLGLITAVVLMILGPTIWVQILGHEKAIFPYEYPALFSITVAFLGIWFFSATDNSAEGARERELFRAQFIRSQTGFGVEQGRAH" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"YJCH-MONOMER" "DUF485 domain-containing inner membrane protein YjcH" ["YjcH"] "MNGTIYQRIEDNAHFRELVEKRQRFATILSIIMLAVYIGFILLIAFAPGWLGTPLNPNTSVTRGIPIGVGVIVISFVLTGIYIWRANGEFDRLNNEVLHEVQAS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 +"YJCQ-MONOMER" "putative multidrug efflux pump subunit MdtO" ["MdtO", "YjcQ", "SdsQ"] "MSALNSLPLPVVRLLAFFHEELSERRPGRVPQTVQLWVGCLLVILISMTFEIPFVALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWSYGEPLIRLIIAGPILMGCMFLMRTHRLGLVFFAVAIVAIYGQTFPAMLDYPEVVVRLTLWCIVVGLYPTLLMTLIGVLWFPSRAISQMHQALNDRLDDAISHLTDSLAPLPETRIEREALALQKLNVFCLADDANWRTQNAWWQSCVATVTYIYSTLNRYDPTSFADSQAIIEFRQKLASEINKLQHAVAEGQCWQSDWRISESEAMAARECNLENICQTLLQLGQMDPNTPPTPAAKPPSMAADAFTNPDYMRYAVKTLLACLICYTFYSGVDWEGIHTCMLTCVIVANPNVGSSYQKMVLRFGGAFCGAILALLFTLLVMPWLDNIVELLFVLAPIFLLGAWIATSSERSSYIGTQMVVTFALATLENVFGPVYDLVEIRDRALGIIIGTVVSAVIYTFVWPESEARTLPQKLAGTLGMLSKVMRIPRQQEVTALRTYLQIRIGLHAAFNACEEMCQRVALERQLDSEERALLIERSQTVIRQGRDLLHAWDATWNSAQALDNALQPDRAGQFADALEKYAAGLATALSRSPQITLEETPASQAILPTLLKQEQHVCQLFARLPDWTAPALTPATEQAQGATQ" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "YJCV-MONOMER" "D-allose ABC transporter membrane subunit" ["YjcV"] "MGFTTRVKSEASEKKPFNFALFWDKYGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDPFLAAMIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRLISK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"YJCW-MONOMER" "D-allose ABC transporter ATP binding subunit" ["YjcW"] "MATPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNISYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKICGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGIVSDVSNDDIVRLMVGRELQNRFNAMKENVSNLAHETVFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMSEEEIMAWALPQE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"YJCW-MONOMER" "D-allose ABC transporter ATP binding subunit" ["YjcW"] "MATPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNISYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKICGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGIVSDVSNDDIVRLMVGRELQNRFNAMKENVSNLAHETVFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMSEEEIMAWALPQE" ["CCO-PM-BAC-NEG"] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 0 [] {} 1 "YJCX-MONOMER" "D-allose ABC transporter periplasmic binding protein" ["YjcX", "ALBP", "allose binding protein"] "MNKYLKYFSGTLVGLMLSTSAFAAAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGKVIPLDKAPEFKLVDSILVTQ" ["CCO-MEMBRANE", "CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "YJDE-MONOMER" "arginine:agmatine antiporter" ["YjdD", "YjdE", "AdiC"] "MSSDADAHKVGLIPVTLMVSGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNPYPLDAPISKD" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "YJDL-MONOMER" "dipeptide/tripeptide:H+ symporter DtpC" ["YjdL", "DtpC"] "MKTPSQPRAIYYIVAIQIWEYFSFYGMRALLILYLTHQLGFDDNHAISLFSAYASLVYVTPILGGWLADRLLGNRTAVIAGALLMTLGHVVLGIDTNSTFSLYLALAIIICGYGLFKSNISCLLGELYDENDHRRDGGFSLLYAAGNIGSIAAPIACGLAAQWYGWHVGFALAGGGMFIGLLIFLSGHRHFQSTRSMDKKALTSVKFALPVWSWLVVMLCLAPVFFTLLLENDWSGYLLAIVCLIAAQIIARMMIKFPEHRRALWQIVLLMFVGTLFWVLAQQGGSTISLFIDRFVNRQAFNIEVPTALFQSVNAIAVMLAGVVLAWLASPESRGNSTLRVWLKFAFGLLLMACGFMLLAFDARHAAADGQASMGVMISGLALMGFAELFIDPVAIAQITRLKMSGVLTGIYMLATGAVANWLAGVVAQQTTESQISGMAIAAYQRFFSQMGEWTLACVAIIVVLAFATRFLFSTPTNMIQESND" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 @@ -4410,12 +4410,12 @@ "YJFT-MONOMER" "L-ascorbate specific PTS enzyme IIB component" ["SgaB", "YjfT"] "MTVRILAVCGNGQGSSMIMKMKVDQFLTQSNIDHTVNSCAVGEYKSELSGADIIIASTHIAGEITVTGNKYVVGVRNMLSPADFGPKLLEVIKEHFPQDVK" [] ["CCO-CYTOSOL"] 0 [] {} 1 "YJFU-MONOMER" "L-ascorbate specific PTS enzyme IIA component" ["SgaA", "YjfU", "PtxA", "EIISga", "EIIUla", "Enzyme IISga", "Enzyme IIUla"] "MKLRDSLAENKSIRLQAEAETWQEAVKIGVDLLVAADVVEPRYYQAILDGVEQFGPYFVIAPGLAMPHGRPEEGVKKTGFSLVTLKKPLEFNHDDNDPVDILITMAAVDANTHQEVGIMQIVNLFEDEENFDRLRACRTEQEVLDLIDRTNAAA" [] ["CCO-PM-BAC-NEG", "CCO-CYTOSOL"] 0 [] {} 1 "YJGT-MONOMER" "L-idonate/5-ketogluconate/gluconate transporter" ["YjgT", "GntW", "IdnT"] "MPLIIIAAGVALLLILMIGFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFAAVIPVILMAIAAVCEITLPKTNTVRLFFEFVGNPAVALFIAIVIAIFTLGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGHYISHLMTGTTLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 -"YJHB-MONOMER" "sialic acid transporter NanX" ["NanX", "YjhB"] "MATAWYKQVNPPQRKALFSAWLGYVFDGFDFMMIFYILHIIKADLGITDIQATLIGTVAFIARPIGGGFFGAMADKYGRKPMMMWAIFIYSVGTGLSGIATNLYMLAVCRFIVGLGMSGEYACASTYAVESWPKNLQSKASAFLVSGFSVGNIIAAQIIPQFAEVYGWRNSFFIGLLPVLLVLWIRKSAPESQEWIEDKYKDKSTFLSVFRKPHLSISMIVFLVCFCLFGANWPINGLLPSYLADNGVNTVVISTLMTIAGLGTLTGTIFFGFVGDKIGVKKAFVVGLITSFIFLCPLFFISVKNSSLIGLCLFGLMFTNLGIAGLVPKFIYDYFPTKLRGLGTGLIYNLGATGGMAAPVLATYISGYYGLGVSLFIVTVAFSALLILLVGFDIPGKIYKLSVAK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 +"YJHB-MONOMER" "2,7-anhydro-N-acetylneuraminate transporter NanX" ["NanX", "YjhB"] "MATAWYKQVNPPQRKALFSAWLGYVFDGFDFMMIFYILHIIKADLGITDIQATLIGTVAFIARPIGGGFFGAMADKYGRKPMMMWAIFIYSVGTGLSGIATNLYMLAVCRFIVGLGMSGEYACASTYAVESWPKNLQSKASAFLVSGFSVGNIIAAQIIPQFAEVYGWRNSFFIGLLPVLLVLWIRKSAPESQEWIEDKYKDKSTFLSVFRKPHLSISMIVFLVCFCLFGANWPINGLLPSYLADNGVNTVVISTLMTIAGLGTLTGTIFFGFVGDKIGVKKAFVVGLITSFIFLCPLFFISVKNSSLIGLCLFGLMFTNLGIAGLVPKFIYDYFPTKLRGLGTGLIYNLGATGGMAAPVLATYISGYYGLGVSLFIVTVAFSALLILLVGFDIPGKIYKLSVAK" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 0 "YJHF-MONOMER" "KpLE2 phage-like element; putative transporter YjhF" ["YjhF"] "MPLIIVVAGIALLLLLTIKIKLNTFVSLIIVSIAVAIASGMDLSKVVTSVESGLGGTLGHIGLIFGFGVMLGRLLADAGGAQRIALTMLNYFGKNKLDWAVVCSAFIVGIALFFEVGLILLVPILFAIAREAKISPMFMCVPMLSGLLVAHGFLPPHPGPTVIAREYGADVGLVLIYGIIVGIPTFILCGPVLNKFCQRIIPDAFKKEGNIASLGATRRFSESEMPGFGISFLTAMLPVILMAVVTIIQMTHAKSAADSGLFYNVILFLGNSTIAMLISLLFAIYTMGLGRGKTIPDLMDSCGKAIAGIAGLLLIIGGGGAFKQVLIDSGVGQYISTLVSGMDINPILMAWGVAAFLRICLGSATVAAISTAGLVIPLLAVHPNTNLALITLATGAGSCICSHVNDASFWMIKDFFGLTTKETLLSWTLMSTLLSISGLIFILLASLVL" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YJIO-MONOMER" "multidrug efflux pump / bile salt:H+ antiporter / Na+:H+ antiporter / K+:H+ antiporter" ["MdtM", "YjiO", "MdtM drug MFS transporter", "multidrug efflux pump MdtM"] "MPRFFTRHAATLFFPMALILYDFAAYLSTDLIQPGIINVVRDFNADVSLAPAAVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATMFTTSMTQFLIARAIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLIAPIIGPLSGAALMHFMHWKVLFAIIAVMGFISFVGLLLAMPETVKRGAVPFSAKSVLRDFRNVFCNRLFLFGAATISLSYIPMMSWVAVSPVILIDAGSLTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLSLLIVGNLLSPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNKLPKGTVSASLNMVILMVMSVSVEIGRWLWFNGGRLPFHLLAVVAGVIVVFTLAGLLNRVRQHQAAELVEEQ" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YJIZ-MONOMER" null ["LgoT", "YjjL", "YjiZ", "L-galactonate MFS transporter"] "MEKENITIDPRSSFTPSSSADIPVPPDGLVQRSTRIKRIQTTAMLLLFFAAVINYLDRSSLSVANLTIREELGLSATEIGALLSVFSLAYGIAQLPCGPLLDRKGPRLMLGLGMFFWSLFQAMSGMVHNFTQFVLVRIGMGIGEAPMNPCGVKVINDWFNIKERGRPMGFFNAASTIGVAVSPPILAAMMLVMGWRGMFITIGVLGIFLAIGWYMLYRNREHVELTAVEQAYLNAGSVNARRDPLSFAEWRSLFRNRTMWGMMLGFSGINYTAWLYLAWLPGYLQTAYNLDLKSTGLMAAIPFLFGAAGMLVNGYVTDWLVKGGMAPIKSRKICIIAGMFCSAAFTLIVPQATTSMTAVLLIGMALFCIHFAGTSCWGLIHVAVASRMTASVGSIQNFASFICASFAPIITGFIVDTTHSFRLALIICGCVTAAGALAYIFLVRQPINDPRKD" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YJJK-MONOMER" "energy-dependent translational throttle protein EttA" ["YjjK", "EttA"] "MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEARPQPDIKIGYLPQEPQLNPEHTVRESIEEAVSEVVNALKRLDEVYALYADPDADFDKLAAEQGRLEEIIQAHDGHNLNVQLERAADALRLPDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEWVRQGTKGRQSKGKARLARFEELNSTEYQKRNETNELFIPPGPRLGDKVLEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITLGETVKLASVDQFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNMLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIATHILDYQDEGKVEFFEGNFTEYEEYKKRTLGADALEPKRIKYKRIAK" [] ["CCO-CYTOSOL", "CCO-PM-BAC-NEG"] 1 [] {} 0 -"YLIA-MONOMER" "glutathione ABC transporter ATP binding subunit GsiA" ["GsiA", "YliA"] "MPHSDELDAGNVLAVENLNIAFMQDQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQNASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGTVEQIFHAPQHPYTRALLAAVPQLGAMKGLDYPRRFPLISLEHPAKQAPPIEQKTVVDGEPVLRVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTIGDSIIEPLRVHGLLPGKDAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLLAAVPVAEPSRQRPQRVLLSDDLPSNIHLRGEEVAAVSLQCVGPGHYVAQPQSEYAFMRR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"YLIA-MONOMER" "glutathione ABC transporter ATP binding subunit GsiA" ["GsiA", "YliA"] "MPHSDELDAGNVLAVENLNIAFMQDQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQNASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGTVEQIFHAPQHPYTRALLAAVPQLGAMKGLDYPRRFPLISLEHPAKQAPPIEQKTVVDGEPVLRVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTIGDSIIEPLRVHGLLPGKDAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLLAAVPVAEPSRQRPQRVLLSDDLPSNIHLRGEEVAAVSLQCVGPGHYVAQPQSEYAFMRR" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "YLIB-MONOMER" "glutathione ABC transporter periplasmic binding protein" ["GsiB", "YliB"] "MARAVHRSGLVALGIATALMASCAFAAKDVVVAVGSNFTTLDPYDANDTLSQAVAKSFYQGLFGLDKEMKLKNVLAESYTVSDDGITYTVKLREGIKFQDGTDFNAAAVKANLDRASDPANHLKRYNLYKNIAKTEAIDPTTVKITLKQPFSAFINILAHPATAMISPAALEKYGKEIGFYPVGTGPYELDTWNQTDFVKVKKFAGYWQPGLPKLDSITWRPVADNNTRAAMLQTGEAQFAFPIPYEQATLLEKNKNIELMASPSIMQRYISMNVTQKPFDNPKVREALNYAINRPALVKVAFAGYATPATGVVPPSIAYAQSYKPWPYDPVKARELLKEAGYPNGFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEVEGKGQKESGVRMFYTGWSASTGEADWALSPLFASQNWPPTLFNTAFYSNKQVDDFLAQALKTNDPAEKTRLYKAAQDIIWQESPWIPLVVEKLVSAHSKNLTGFWIMPDTGFSFEDADLQ" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 "YLIC-MONOMER" "glutathione ABC transporter membrane subunit GsiC" ["GsiC", "YliC"] "MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEADAQVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAINPAIRYK" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "YLID-MONOMER" "glutathione ABC transporter membrane subunit GsiD" ["GsiD", "YliD"] "MRLFNWRRQAVLNAMPLVKPDQVRTPWHEFWRRFRRQHMAMTAALFVILLIVVAIFARWIAPYDAENYFDYDNLNNGPSLQHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDRLIMRICDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIESARSIGASDMTVLLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVIAPHVAVFPALAIFLTVLAFNLLGDGLRDALDPKIKG" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 @@ -4428,12 +4428,12 @@ "YPHD-MONOMER" "putative ABC transporter membrane subunit YphD" ["YphD"] "MSASSLPLPQGKSVSLKQFVSRHINEIGLLVVIAILYLVFSLNAPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLLQFEVPLAVACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENEVLDWLGGQFLGVPVSALIMIVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVLANILLTQRSSKAKR" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "YPHE-MONOMER" "putative ABC transporter ATP-binding protein YphE" ["YphE"] "MFTATEAVPVAKVVAGNKRYPGVVALDNVNFTLNKGEVRALLGKNGAGKSTLIRMLTGSERPDSGDIWIGETRLEGDEATLTRRAAELGVRAVYQELSLVEGLTVAENLCLGQWPRRNGMIDYLQMAQDAQRCLQALGVDVSPEQLVSTLSPAQKQLVEIARVMKGEPRVVILDEPTSSLASAEVELVISAVKKMSALGVAVIYVSHRMEEIRRIASCATVMRDGQVAGDVMLENTSTHHIVSLMLGRDHVDIAPVAPQEIVDQAVLEVRALRHKPKLEDISFTLRRGEVLGIAGLLGAGRSELLKAIVGLEEYEQGEIVINGEKITRPDYGDMLKRGIGYTPENRKEAGIIPWLGVDENTVLTNRQKISANGVLQWSTIRRLTEEVMQRMTVKAASSETPIGTLSGGNQQKVVIGRWVYAASQILLLDEPTRGVDIEAKQQIYRIVRELAAEGKSVVFISSEVEELPLVCDRILLLQHGTFSQEFHAPVNVDELMSAILSVH" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "YRAO-MONOMER" "DnaA initiator-associating protein DiaA" ["YraO", "DiaA"] "MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPHQDD" [] ["CCO-CYTOSOL"] 0 [] {} 1 -"YRBE-MONOMER" "intermembrane phospholipid transport system, integral membrane subunit MlaE" ["YrbE", "MlaE"] "MLLNALASLGHKGIKTLRTFGRAGLMLFNALVGKPEFRKHAPLLVRQLYNVGVLSMLIIVVSGVFIGMVLGLQGYLVLTTYSAETSLGMLVALSLLRELGPVVAALLFAGRAGSALTAEIGLMRATEQLSSMEMMAVDPLRRVISPRFWAGVISLPLLTVIFVAVGIWGGSLVGVSWKGIDSGFFWSAMQNAVDWRMDLVNCLIKSVVFAITVTWISLFNGYDAIPTSAGISRATTRTVVHSSLAVLGLDFVLTALMFGN" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"YRBF-MONOMER" "intermembrane phospholipid transport system, ATP binding subunit MlaF" ["YrbF", "MlaF"] "MEQSVANLVDMRDVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAWILADKKIVAHGSAQALQANPDPRVRQFLDGIADGPVPFRYPAGDYHADLLPGS" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"YRBE-MONOMER" "intermembrane phospholipid transport system, integral membrane subunit MlaE" ["YrbE", "MlaE"] "MLLNALASLGHKGIKTLRTFGRAGLMLFNALVGKPEFRKHAPLLVRQLYNVGVLSMLIIVVSGVFIGMVLGLQGYLVLTTYSAETSLGMLVALSLLRELGPVVAALLFAGRAGSALTAEIGLMRATEQLSSMEMMAVDPLRRVISPRFWAGVISLPLLTVIFVAVGIWGGSLVGVSWKGIDSGFFWSAMQNAVDWRMDLVNCLIKSVVFAITVTWISLFNGYDAIPTSAGISRATTRTVVHSSLAVLGLDFVLTALMFGN" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"YRBF-MONOMER" "intermembrane phospholipid transport system, ATP binding subunit MlaF" ["YrbF", "MlaF"] "MEQSVANLVDMRDVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAWILADKKIVAHGSAQALQANPDPRVRQFLDGIADGPVPFRYPAGDYHADLLPGS" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "YRBG-MONOMER" "putative transport protein YrbG" ["YrbG"] "MLLATALLIVGLLLVVYSADRLVFAASILCRTFGIPPLIIGMTVVSIGTSLPEVIVSLAASLHEQRDLAVGTALGSNIINILLILGLAALVRPFTVHSDVLRRELPLMLLVSVVAGSVLYDGQLSRSDGIFLLFLAVLWLLFIVKLARQAERQGTDSLTREQLAELPRDGGLPVAFLWLGIALIIMPVATRMVVDNATVLANYFAISELTMGLTAIAIGTSLPELATAIAGVRKGENDIAVGNIIGANIFNIVIVLGLPALITPGEIDPLAYSRDYSVMLLVSIIFALLCWRRSPQPGRGVGVLLTGGFIVWLAMLYWLSPILVE" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 0 "YTFQ-MONOMER" "galactofuranose ABC transporter periplasmic binding protein" [] "MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKKNMGY" ["CCO-PERI-BAC"] ["CCO-PERI-BAC"] 0 [] {} 1 -"YTFR-MONOMER" "galactofuranose ABC transporter putative ATP binding subunit" ["YtfR", "YtfS"] "MTTDQHQEILRTEGLSKFFPGVKALDNVDFSLRRGEIMALLGENGAGKSTLIKALTGVYHADRGTIWLEGQAISPKNTAHAQQLGIGTVYQEVNLLPNMSVADNLFIGREPKRFGLLRRKEMEKRATELMASYGFSLDVREPLNRFSVAMQQIVAICRAIDLSAKVLILDEPTASLDTQEVELLFDLMRQLRDRGVSLIFVTHFLDQVYQVSDRITVLRNGSFVGCRETCELPQIELVKMMLGRELDTHALQRAGRTLLSDKPVAAFKNYGKKGTIAPFDLEVRPGEIVGLAGLLGSGRTETAEVIFGIKPADSGTALIKGKPQNLRSPHQASVLGIGFCPEDRKTDGIIAAASVRENIILALQAQRGWLRPISRKEQQEIAERFIRQLGIRTPSTEQPIEFLSGGNQQKVLLSRWLLTRPQFLILDEPTRGIDVGAHAEIIRLIETLCADGLALLVISSELEELVGYADRVIIMRDRKQVAEIPLAELSVPAIMNAIAA" [] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 +"YTFR-MONOMER" "galactofuranose ABC transporter putative ATP binding subunit" ["YtfR", "YtfS"] "MTTDQHQEILRTEGLSKFFPGVKALDNVDFSLRRGEIMALLGENGAGKSTLIKALTGVYHADRGTIWLEGQAISPKNTAHAQQLGIGTVYQEVNLLPNMSVADNLFIGREPKRFGLLRRKEMEKRATELMASYGFSLDVREPLNRFSVAMQQIVAICRAIDLSAKVLILDEPTASLDTQEVELLFDLMRQLRDRGVSLIFVTHFLDQVYQVSDRITVLRNGSFVGCRETCELPQIELVKMMLGRELDTHALQRAGRTLLSDKPVAAFKNYGKKGTIAPFDLEVRPGEIVGLAGLLGSGRTETAEVIFGIKPADSGTALIKGKPQNLRSPHQASVLGIGFCPEDRKTDGIIAAASVRENIILALQAQRGWLRPISRKEQQEIAERFIRQLGIRTPSTEQPIEFLSGGNQQKVLLSRWLLTRPQFLILDEPTRGIDVGAHAEIIRLIETLCADGLALLVISSELEELVGYADRVIIMRDRKQVAEIPLAELSVPAIMNAIAA" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 "YTFT-MONOMER" "galactofuranose ABC transporter putative membrane subunit YtfT" [] "MMPQSLPDTTTPKRRFRWPTGMPQLVALLLVLLVDSLVAPHFWQVVLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVAGFSLPIVLLSALGTGILAGLWNGILVAILKIQPFVATLILMVAGRGVAQLITAGQIVTFNSPDLSWFGSGSLLFLPTPVIIAVLTLILFWLLTRKTALGMFIEAVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVAADIRGADANNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCVLIVQSQRFISLIKGVRSRDKT" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 "ZNUA-MONOMER" "Zn2+ ABC transporter periplasmic binding protein" ["YzzP", "YebL"] "MLHKKTLLFAALSAALWGGATQAADAAVVASLKPVGFIASAIADGVTETEVLLPDGASEHDYSLRPSDVKRLQNADLVVWVGPEMEAFMQKPVSKLPGAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMHLWLSPEIARATAVAIHGKLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMGTLDPLGTNIKLGKTSYSEFLSQLANQYASCLKGD" [] ["CCO-PERI-BAC"] 0 [] {"ZN+2": 1} 1 -"ZNUB-MONOMER" "Zn2+ ABC transporter membrane subunit" ["YebI"] "MIELLFPGWLAGIMLACAAGPLGSFVVWRRMSYFGDTLAHASLLGVAFGLLLDVNPFYAVIAVTLLLAGGLVWLEKRPQLAIDTLLGIMAHSALSLGLVVVSLMSNIRVDLMAYLFGDLLAVTPEDLISIAIGVVIVVAILFWQWRNLLSMTISPDLAFVDGVKLQRVKLLLMLVTALTIGVAMKFVGALIITSLLIIPAATARRFARTPEQMAGVAVLVGMVAVTGGLTFSAVYDTPAGPSVVLCAALLFILSMMKKQAS" ["CCO-PM-BAC-NEG"] ["CCO-MEMBRANE", "CCO-PM-BAC-NEG"] 0 [] {} 1 -"ZNUC-MONOMER" "Zn2+ ABC transporter ATP binding subunit" ["YebM"] "MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVTPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTHKEDILPALKRVQAGHLINAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCGVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVSLHPEFISMFGPRGAEQLGIYRHHHNHRHDLQGRIVLRRGNDRS" [] ["CCO-PM-BAC-NEG", "CCO-MEMBRANE"] 0 [] {} 1 +"ZNUB-MONOMER" "Zn2+ ABC transporter membrane subunit" ["YebI"] "MIELLFPGWLAGIMLACAAGPLGSFVVWRRMSYFGDTLAHASLLGVAFGLLLDVNPFYAVIAVTLLLAGGLVWLEKRPQLAIDTLLGIMAHSALSLGLVVVSLMSNIRVDLMAYLFGDLLAVTPEDLISIAIGVVIVVAILFWQWRNLLSMTISPDLAFVDGVKLQRVKLLLMLVTALTIGVAMKFVGALIITSLLIIPAATARRFARTPEQMAGVAVLVGMVAVTGGLTFSAVYDTPAGPSVVLCAALLFILSMMKKQAS" ["CCO-PM-BAC-NEG"] ["CCO-PM-BAC-NEG"] 0 [] {} 1 +"ZNUC-MONOMER" "Zn2+ ABC transporter ATP binding subunit" ["YebM"] "MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVTPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTHKEDILPALKRVQAGHLINAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCGVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVSLHPEFISMFGPRGAEQLGIYRHHHNHRHDLQGRIVLRRGNDRS" [] ["CCO-PM-BAC-NEG"] 0 [] {} 1 diff --git a/reconstruction/ecoli/flat/rnas.tsv b/reconstruction/ecoli/flat/rnas.tsv index ae0effde8..9da8c3b6b 100644 --- a/reconstruction/ecoli/flat/rnas.tsv +++ b/reconstruction/ecoli/flat/rnas.tsv @@ -1,7 +1,7 @@ # Organism: Escherichia coli K-12 substr. MG1655 # Database: EcoCyc -# Version: 28.1 -# Date and time generated: March 7, 2024, 13:56:42 +# Version: 28.5 +# Date and time generated: July 19, 2024, 9:41:42 "id" "common_name" "synonyms" "type" "modified_forms" "gene_id" "monomer_ids" "anticodon" "coding_segments" "EG10001_RNA" "alr" ["alr", "alr5", "b4053", "ECK4045"] "mRNA" [] "EG10001" ["ALARACEBIOSYN-MONOMER"] null [] "EG10002_RNA" "modB" ["modB", "chlJ", "tslJ", "b0764", "ECK0753"] "mRNA" [] "EG10002" ["MODB-MONOMER"] null [] @@ -1257,7 +1257,7 @@ "EG11280_RNA" "leuL" ["leuL", "leuLP", "leulL", "leulLP", "leuIP", "b0075", "ECK0077"] "mRNA" [] "EG11280" ["EG11280-MONOMER"] null [] "EG11281_RNA" "mutL" ["mutL", "b4170", "ECK4166"] "mRNA" [] "EG11281" ["EG11281-MONOMER"] null [] "EG11282_RNA" "hyfB" ["hyfB", "yffF", "b2482", "ECK2478"] "mRNA" [] "EG11282" ["MONOMER0-153"] null [] -"EG11283_RNA" "phnE" ["phnE", "ECK4097", "b4103", "b4104", "b4583", "ECK4096"] "pseudo" [] "EG11283" ["PHNE-MONOMER"] null [] +"EG11283_RNA" "phnE1" ["phnE1", "ECK4097", "b4103", "b4104", "b4583", "ECK4096"] "mRNA" [] "EG11283" ["PHNE-MONOMER"] null [] "EG11284_RNA" "fabZ" ["fabZ", "sfhC21", "sabA1", "sefA", "yaeA", "b0180", "ECK0179"] "mRNA" [] "EG11284" ["FABZ-MONOMER"] null [] "EG11285_RNA" "glrR" ["glrR", "yfhA", "qseF", "b2554", "ECK2551"] "mRNA" [] "EG11285" ["EG11285-MONOMER"] null [] "EG11286_RNA" "argE" ["argE", "b3957", "ECK3948"] "mRNA" [] "EG11286" ["ACETYLORNDEACET-MONOMER"] null [] @@ -2603,7 +2603,7 @@ "G0-10461_RNA" "ypdJ" ["ypdJ", "b4545", "ECK2358"] "mRNA" [] "G0-10461" ["MONOMER0-2683"] null [] "G0-10462_RNA" "ypeB" ["ypeB", "b4546", "ECK2405"] "mRNA" [] "G0-10462" ["MONOMER0-2684"] null [] "G0-10463_RNA" "ypfN" ["ypfN", "b4547", "ECK2468"] "mRNA" [] "G0-10463" ["MONOMER0-2685"] null [] -"G0-10464_RNA" "ypjJ" ["ypjJ", "b4548", "ECK2641"] "mRNA" [] "G0-10464" ["MONOMER0-2686"] null [] +"G0-10464_RNA" "ypjJ" ["ypjJ", "lfgC", "b4548", "ECK2641"] "mRNA" [] "G0-10464" ["MONOMER0-2686"] null [] "G0-10465_RNA" "arfA" ["arfA", "yhdL", "b4550", "ECK3278"] "mRNA" [] "G0-10465" ["MONOMER0-2687"] null [] "G0-10466_RNA" "yheV" ["yheV", "b4551", "ECK3337"] "mRNA" [] "G0-10466" ["MONOMER0-2688"] null [] "G0-10467_RNA" "ysaB" ["ysaB", "b4553", "ECK3549"] "mRNA" [] "G0-10467" ["MONOMER0-2689"] null [] @@ -2726,7 +2726,7 @@ "G0-10751_RNA" "agrA" ["agrA", "b4712", "ECK4569"] "mRNA" [] "G0-10751" [] null [] "RNA0-380" "small regulatory RNA AgrB" ["AgrB"] "miscRNA" [] "G0-10752" [] null [] "RNA0-385" "Rac prophage; small regulatory RNA antitoxin RalA" ["RalA", "RalA antitoxin of the RalRA toxin-antitoxin system"] "miscRNA" [] "G0-16600" [] null [] -"RNA0-386" "small regulatory RNA MicL-S" ["SlrA", "MicL-S", "RyeF"] "miscRNA" [] "G0-16601" [] null [] +"RNA0-386" "small regulatory RNA MicL" ["SlrA", "MicL-S", "RyeF"] "miscRNA" [] "G0-16601" [] null [] "G0-16635_RNA" "ryeG" ["ryeG", "IS118"] "mRNA" [] "G0-16635" [] null [] "RNA0-388" "small regulatory RNA 3'ETSleuZ" [] "miscRNA" [] "G0-16636" [] null [] "G0-16637_RNA" "insB9" ["insB9", "b4710", "ECK4567"] "mRNA" [] "G0-16637" ["MONOMER0-4345"] null [] @@ -2894,12 +2894,11 @@ "RNA0-435" "small antisense RNA AsflhD" ["AsflhD"] "miscRNA" [] "G0-17119" [] null [] "RNA0-436" "small antisense RNA StfZ" ["StfZ"] "miscRNA" [] "G0-17120" [] null [] "RNA0-437" "small antisense RNA AsCRP" [] "miscRNA" [] "G0-17122" [] null [] -"G0-17123_RNA" "asompR" ["asompR", "b4842", "ECK4699"] "mRNA" [] "G0-17123" [] null [] +"RNA0-438" "small antisense RNA AsompR" [] "miscRNA" [] "G0-17123" [] null [] "RNA0-439" "small antisense RNA AsphoP" [] "miscRNA" [] "G0-17124" [] null [] "RNA0-440" "small antisense RNA aMEF" ["aMEF"] "miscRNA" [] "G0-17125" [] null [] "G0-17126_RNA" "xtpA" ["xtpA", "b4845", "ECK4702"] "mRNA" [] "G0-17126" ["MONOMER0-4561"] null [] "RNA0-441" "arfA-derived small regulatory RNA" [] "miscRNA" [] "G0-17130" [] null [] -"G0-17132_RNA" null [] "pseudo" [] "G0-17132" [] null [] "G0-41_RNA" "ecnA" ["ecnA", "b4410", "ECK4142"] "mRNA" [] "G0-41" ["MONOMER0-1562"] null [] "G0-8601_RNA" "glcF" ["glcF", "gox", "yghL", "b2978", "b4467", "ECK2972"] "mRNA" [] "G0-8601" ["MONOMER0-561"] null [] "CSRB-RNA" "small regulatory RNA CsrB" ["CsrB"] "miscRNA" [] "G0-8785" [] null [] @@ -4236,10 +4235,10 @@ "G7373_RNA" "yfjU" ["yfjU", "b2638", "ECK2634"] "mRNA" [] "G7373" ["G7373-MONOMER"] null [] "G7376_RNA" "yfjV" ["yfjV", "ypjM", "ypjL", "ECK2637", "ECK2636", "b2640", "b2639", "b2641", "ECK2635"] "pseudo" [] "G7376" ["G7376-MONOMER"] null [] "G7377_RNA" "yfjW" ["yfjW", "b2642", "ECK2638"] "mRNA" [] "G7377" ["G7377-MONOMER"] null [] -"G7378_RNA" "yfjX" ["yfjX", "b2643", "ECK2639"] "mRNA" [] "G7378" ["G7378-MONOMER"] null [] -"G7379_RNA" "yfjY" ["yfjY", "b2644", "ECK2640"] "mRNA" [] "G7379" ["G7379-MONOMER"] null [] -"G7380_RNA" "yfjZ" ["yfjZ", "b2645", "ECK2642"] "mRNA" [] "G7380" ["G7380-MONOMER"] null [] -"G7381_RNA" "ypjF" ["ypjF", "b2646", "ECK2643"] "mRNA" [] "G7381" ["G7381-MONOMER"] null [] +"G7378_RNA" "lfgA" ["lfgA", "yfjX", "b2643", "ECK2639"] "mRNA" [] "G7378" ["G7378-MONOMER"] null [] +"G7379_RNA" "lfgB" ["lfgB", "yfjY", "b2644", "ECK2640"] "mRNA" [] "G7379" ["G7379-MONOMER"] null [] +"G7380_RNA" "yfjZ" ["yfjZ", "lfgD", "b2645", "ECK2642"] "mRNA" [] "G7380" ["G7380-MONOMER"] null [] +"G7381_RNA" "ypjF" ["ypjF", "lfgE", "b2646", "ECK2643"] "mRNA" [] "G7381" ["G7381-MONOMER"] null [] "G7382_RNA" "ypjA" ["ypjA", "b2647", "ECK2644"] "mRNA" [] "G7382" ["G7382-MONOMER"] null [] "G7383_RNA" "pinH" ["pinH", "ypjG", "b2648", "ECK2645"] "pseudo" [] "G7383" ["G7383-MONOMER"] null [] "G7384_RNA" "ypjB" ["ypjB", "b2649", "ECK2646"] "mRNA" [] "G7384" ["G7384-MONOMER"] null [] @@ -4384,7 +4383,7 @@ "G7535_RNA" "yghD" ["yghD", "ecfC", "b2968", "ECK2963"] "mRNA" [] "G7535" ["G7535-MONOMER"] null [] "G7536_RNA" "yghE" ["yghE", "ecfB", "b2969", "ECK2964"] "mRNA" [] "G7536" ["G7536-MONOMER"] null [] "G7537_RNA" "yghF" ["yghF", "ecfA", "b2970", "ECK2965"] "mRNA" [] "G7537" ["G7537-MONOMER"] null [] -"G7538_RNA" "yghG" ["yghG", "b2971", "ECK2966"] "mRNA" [] "G7538" ["G7538-MONOMER"] null [] +"G7538_RNA" "yghG" ["yghG", "gspSβ", "b2971", "ECK2966"] "mRNA" [] "G7538" ["G7538-MONOMER"] null [] "G7539_RNA" "pppA" ["pppA", "yghH", "b2972", "ECK2967"] "mRNA" [] "G7539" ["G7539-MONOMER"] null [] "G7541_RNA" "yghJ" ["yghJ", "b2974", "b2973", "sslE", "b4466", "ECK2968"] "mRNA" [] "G7541" ["G7541-MONOMER"] null [] "G7542_RNA" "glcA" ["glcA", "yghK", "b2975", "ECK2969"] "mRNA" [] "G7542" ["B2975-MONOMER"] null [] @@ -4512,7 +4511,7 @@ "G7678_RNA" "nanR" ["nanR", "yhcK", "b3226", "ECK3215"] "mRNA" [] "G7678" ["G7678-MONOMER"] null [] "G7679_RNA" "dcuD" ["dcuD", "yhcL", "b3227", "ECK3216"] "mRNA" [] "G7679" ["YHCL-MONOMER"] null [] "G7680_RNA" "zapE" ["zapE", "yhcM", "b3232", "ECK3221"] "mRNA" [] "G7680" ["G7680-MONOMER"] null [] -"G7681_RNA" "zapG" ["zapG", "yhcB", "lapD", "b3233", "ECK3222"] "mRNA" [] "G7681" ["G7681-MONOMER"] null [] +"G7681_RNA" "yhcB" ["yhcB", "lapD", "zapG", "b3233", "ECK3222"] "mRNA" [] "G7681" ["G7681-MONOMER"] null [] "G7682_RNA" "degQ" ["degQ", "hhoA", "b3234", "ECK3223"] "mRNA" [] "G7682" ["G7682-MONOMER"] null [] "G7683_RNA" "yhcN" ["yhcN", "b3238", "ECK3227"] "mRNA" [] "G7683" ["G7683-MONOMER"] null [] "G7684_RNA" "yhcO" ["yhcO", "b3239", "ECK3228"] "mRNA" [] "G7684" ["G7684-MONOMER"] null [] diff --git a/reconstruction/ecoli/flat/transcription_units.tsv b/reconstruction/ecoli/flat/transcription_units.tsv index 6d2fd55e1..fd3b1771e 100644 --- a/reconstruction/ecoli/flat/transcription_units.tsv +++ b/reconstruction/ecoli/flat/transcription_units.tsv @@ -1,7 +1,7 @@ # Organism: Escherichia coli K-12 substr. MG1655 # Database: EcoCyc -# Version: 28.1 -# Date and time generated: March 7, 2024, 13:56:51 +# Version: 28.5 +# Date and time generated: July 19, 2024, 9:41:46 "id" "common_name" "genes" "left_end_pos" "right_end_pos" "direction" "evidence" "TU-8381" "spy" ["G6939"] 1825057 1825688 "-" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU-8382" "ycaC" ["EG11241"] 944931 945557 "-" ["EV-COMP-AINF-SINGLE-DIRECTON"] @@ -719,7 +719,7 @@ "TU0-13482" "yeeP" ["G7079"] 2070786 2071211 "+" ["EV-COMP-AINF"] "TU0-13483" "yeeRST-cbeA-cbtA-yeeW" ["G7086", "G7085", "G7084", "G7083", "G7082", "G7081"] 2074779 2078134 "+" ["EV-COMP-AINF"] "TU0-13484" "yoeF" ["G0-10456"] 2078575 2078931 "+" ["EV-COMP-AINF"] -"TU0-13485" "yeeX" ["G7087"] 2079032 2079361 "-" ["EV-COMP-AINF"] +"TU0-13485" "tmaR" ["G7087"] 2079032 2079361 "-" ["EV-COMP-AINF"] "TU0-13486" "yeeA" ["EG11891"] 2079533 2080591 "-" ["EV-COMP-AINF"] "TU0-13487" "sbmC" ["EG11892"] 2080789 2081325 "-" ["EV-COMP-AINF"] "TU0-13488" "dacD" ["EG11893"] 2081341 2082547 "-" ["EV-COMP-AINF"] @@ -740,7 +740,7 @@ "TU0-13505" "trhP" ["G7118"] 2165668 2167029 "+" ["EV-COMP-AINF"] "TU0-13506" "cyaR" ["G0-8878"] 2167114 2167200 "+" ["EV-COMP-AINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-13507" "insE5EF5F5" ["G7126", "G7125", "G0-10528"] 2170236 2171398 "+" ["EV-COMP-AINF"] -"TU0-13509" "yegTUV" ["G7132", "G7131", "G7130"] 2178781 2182061 "+" ["EV-COMP-AINF"] +"TU0-13509" "yegTUV" ["G7132", "G7131", "G7130"] 2178781 2182061 "+" ["EV-COMP-AINF", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION-NORTHERN"] "TU0-13510" "yegW" ["G7133"] 2182035 2182781 "-" ["EV-COMP-AINF", "EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU0-13511" "yegX" ["G7134"] 2182833 2183651 "-" ["EV-COMP-AINF"] "TU0-13512" "thiMD" ["M007", "G7135"] 2183716 2185451 "-" ["EV-COMP-AINF"] @@ -915,7 +915,7 @@ "TU0-13696" "yfjU" ["G7373"] 2771840 2772154 "-" ["EV-COMP-AINF"] "TU0-13697" "yfjV" ["G7376"] 2772167 2773182 "-" ["EV-COMP-AINF"] "TU0-13698" "yfjW" ["G7377"] 2773318 2775021 "+" ["EV-COMP-AINF"] -"TU0-13699" "yfjXY-ypjJ-yfjZ-ypjF" ["G7381", "G7380", "G0-10464", "G7379", "G7378"] 2775919 2777782 "+" ["EV-COMP-AINF"] +"TU0-13699" "lfgABCDE" ["G7381", "G7380", "G0-10464", "G7379", "G7378"] 2775653 2777782 "+" ["EV-COMP-AINF"] "TU0-13700" "ypjA" ["G7382"] 2778146 2782726 "-" ["EV-COMP-AINF"] "TU0-13701" "pinH" ["G7383"] 2783065 2783304 "-" ["EV-COMP-AINF"] "TU0-13702" "ypjB" ["G7384"] 2783638 2784818 "-" ["EV-COMP-AINF"] @@ -1866,6 +1866,12 @@ "TU0-198738" "yqhJ" ["G0-17032"] 3111266 3111325 "+" ["EV-COMP-HINF-IGC", "EV-IC"] "TU0-198739" "ysdE" ["G0-17044"] 3853766 3853840 "-" ["EV-COMP-HINF-IGC", "EV-IC"] "TU0-198740" "yqjD" ["G7612"] 3249270 3249680 "+" [] +"TU0-198742" "proV" ["EG10771"] 2804815 2806382 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-198743" "proW" ["EG10772"] 2806010 2807102 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-198744" "proX" ["EG10773"] 2806878 2808124 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] +"TU0-198745" "nikABCDER" ["EG11519", "EG12079", "EG12078", "EG12077", "EG12076", "EG12075"] 3613667 3618989 "+" ["EV-EXP-IEP-COREGULATION"] +"TU0-198746" "nuoABCEFGHIJKLMN" ["EG12093", "EG11773", "EG12092", "EG12091", "EG12090", "EG12089", "EG12088", "EG12087", "EG11774", "EG12086", "EG12084", "EG12083", "EG12082"] 2390048 2405072 "-" ["EV-EXP-IEP-COREGULATION"] +"TU0-198747" "hisGDCBHAFI" ["EG10451", "EG10448", "EG10444", "EG10450", "EG10445", "EG10446", "EG10447", "EG10449"] 2090192 2097225 "+" ["EV-EXP-IEP-RNA-SEQ"] "TU0-2" "recN" ["EG10831"] 2751759 2753456 "+" ["EV-COMP-AINF"] "TU0-2001" "rlmL-uup" ["G6488", "G6489"] 1007672 1011871 "+" ["EV-EXP-IMP-POLAR-MUTATION"] "TU0-2021" "psiE" ["EG11209"] 4240300 4240735 "+" [] @@ -3589,7 +3595,7 @@ "TU00521" "leuQPV" ["EG30051", "EG30047", "EG30048"] 4606079 4606432 "-" ["EV-EXP-IDA-BOUNDARIES-DEFINED", "EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00522" "pdhR-aceEF-lpdA" ["EG11088", "EG10024", "EG10025", "EG10543"] 122034 129394 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00523" "lpdA" ["EG10543"] 127717 129394 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] -"TU00524" "sdhCDAB-sucABCD-sdhX" ["G0-17009", "EG10933", "EG10934", "EG10931", "EG10932", "EG10979", "EG10980", "EG10981", "EG10982"] 754958 765150 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] +"TU00524" "sdhCDAB-sucABCD-sdhX" ["G6388", "G0-17009", "EG10933", "EG10934", "EG10931", "EG10932", "EG10979", "EG10980", "EG10981", "EG10982"] 754958 765150 "+" ["EV-EXP-IDA-TRANSCRIPT-LEN-DETERMINATION"] "TU00526" "rseABC" ["G7347", "G7348", "EG12341"] 2707322 2709632 "-" ["EV-EXP-IEP-COREGULATION"] "TU00527" "pykF" ["EG10804"] 1755467 1757110 "+" ["EV-EXP-IDA-BOUNDARIES-DEFINED"] "TU101" "uxuAB" ["EG20248", "EG11066"] 4551518 4554361 "+" ["EV-EXP-IEP-COREGULATION", "EV-EXP-IEP"] diff --git a/reconstruction/ecoli/flat/trna_charging_reactions.tsv b/reconstruction/ecoli/flat/trna_charging_reactions.tsv index b22864d5f..7ce177f6b 100644 --- a/reconstruction/ecoli/flat/trna_charging_reactions.tsv +++ b/reconstruction/ecoli/flat/trna_charging_reactions.tsv @@ -1,7 +1,7 @@ # Organism: Escherichia coli K-12 substr. MG1655 # Database: EcoCyc -# Version: 28.1 -# Date and time generated: March 7, 2024, 13:56:53 +# Version: 28.5 +# Date and time generated: July 19, 2024, 9:41:47 "id" "stoichiometry" "catalyzed_by" "common_name" "ALANINE--TRNA-LIGASE-RXN_alaT-tRNA" {"L-ALPHA-ALANINE": -1, "ATP": -1, "alaT-tRNA": -1, "PPI": 1, "AMP": 1, "charged-alaT-tRNA": 1} ["ALAS-CPLX"] "ALANYL-TRNA SYNTHETASE" "ALANINE--TRNA-LIGASE-RXN_alaU-tRNA" {"L-ALPHA-ALANINE": -1, "ATP": -1, "alaU-tRNA": -1, "PPI": 1, "AMP": 1, "charged-alaU-tRNA": 1} ["ALAS-CPLX"] "ALANYL-TRNA SYNTHETASE" From 226cbfa27a06e3f7fffce6b04e23fe88add8b67c Mon Sep 17 00:00:00 2001 From: Nora Date: Fri, 13 Sep 2024 10:26:37 -0700 Subject: [PATCH 24/34] changed compartment of EG12298-MONOMER, and eliminated protein deg adjustments based on N-end rule for ADENYLATECYC-MONOMER and SPOT-MONOMER, which now have updated sequences. (#1455) --- .../ecoli/flat/adjustments/protein_deg_rates_adjustments.tsv | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/reconstruction/ecoli/flat/adjustments/protein_deg_rates_adjustments.tsv b/reconstruction/ecoli/flat/adjustments/protein_deg_rates_adjustments.tsv index 520b15f4a..a0b3aa0b6 100644 --- a/reconstruction/ecoli/flat/adjustments/protein_deg_rates_adjustments.tsv +++ b/reconstruction/ecoli/flat/adjustments/protein_deg_rates_adjustments.tsv @@ -1,5 +1,3 @@ # Adjustments to get protein expression for certain enzymes required for metabolism "name" "value" "units" "_source" "_comments" -"ADENYLATECYC-MONOMER[c]" "2.0/600" "fit_sim_data_1.py" "CyaA, adenylate cyclase; convert from 2 min to 10 hr half life to get expression in acetate condition (required for cAMP)" -"SPOT-MONOMER[c]" "2.0/600" "fit_sim_data_1.py" "SpoT, ppGpp phosphatase; convert from 2 min to 10 hr half life to better match expected protein counts" -"EG12298-MONOMER[p]" 0.1 "fit_sim_data_1.py" "yibQ, Predicted polysaccharide deacetylase; This protein is fit for the anaerobic condition" +"EG12298-MONOMER[c]" 0.1 "fit_sim_data_1.py" "yibQ, Predicted polysaccharide deacetylase; This protein is fit for the anaerobic condition" From f124dc7570c3e512c053b6746a2531ffd125b97f Mon Sep 17 00:00:00 2001 From: Jerry Morrison <1fish2@users.noreply.github.com> Date: Wed, 2 Oct 2024 23:19:38 -0700 Subject: [PATCH 25/34] update the pyenv setup steps (#1456) * Manually update pip, then let requirements.txt install the other installers so it can require `setuptools==73.0.1` which is the last version that's compatible with Aesara. It's OK to use some older versions (the pyenv on Sherlock uses 69.0.2) but not `> 73.0.1`. * macOS: Install `cmake` via brew. * Sherlock: `module load git/2.45.1` (git/2.27.0 is no longer available). * Add comments about the different ways to run `test_blas.py` and more consistent results from openblas/0.3.28 and macOS Accelerate. Newer numpy and scipy releases can use Accelerate by default and maybe openblas/0.3.28, but they're not compatible with Aesara. **Note:** Aesara is no longer actively maintained. It's not compatible with newer versions of numpy, scipy, and numba. At some point we'll need to replace it. Its only use in wcEcoli is its Automatic Differentiation feature for `rna_decay.py`. It's likely that PyTorch or TensorFlow can do that, and will remain well maintained. **Note:** A pytest warning says `It is recommended to use setuptools < 60.0 for those Python versions` (< 3.12) but cvxpy 1.3.2 requires `setuptools > 65.5.1`. --- docs/create-pyenv.md | 7 +++++-- requirements.txt | 8 +++++--- wholecell/tests/utils/test_blas.py | 9 ++++++--- 3 files changed, 16 insertions(+), 8 deletions(-) diff --git a/docs/create-pyenv.md b/docs/create-pyenv.md index 601e80678..3fd12c27b 100644 --- a/docs/create-pyenv.md +++ b/docs/create-pyenv.md @@ -58,9 +58,12 @@ This page goes through the Python environment setup steps in more detail and wit **On macOS** ```bash - brew install glpk openssl readline swig suite-sparse xz + brew install cmake glpk openssl readline swig suite-sparse xz ``` + Use the `cmake` native package rather than the `cmake` pip, which can't build + `osqp` and `qdldl`. + **On Ubuntu** ```bash @@ -97,7 +100,7 @@ This page goes through the Python environment setup steps in more detail and wit . "${PI_HOME}/etc/bash_profile" fi - module load git/2.27.0 git-lfs/2.11. + module load git/2.45.1 git-lfs/2.11. module load wcEcoli/python3 export PYENV_ROOT="${PI_HOME}/pyenv" diff --git a/requirements.txt b/requirements.txt index eb34bd880..6438d7805 100644 --- a/requirements.txt +++ b/requirements.txt @@ -25,8 +25,8 @@ # cd ~/dev/wcEcoli # pyenv virtualenv 3.11.3 wcEcoli3 && pyenv local wcEcoli3 # -## Upgrade this virtual environment's installers: -# pip install --upgrade pip setuptools virtualenv virtualenvwrapper virtualenv-clone wheel +## Upgrade this virtual environment's pip installer: +# pip install --upgrade pip # ## Install numpy (if it's the first time) then all the packages listed in this file (see ## docs/create-pyenv.md about whether to create a `~/.numpy-site.cfg` file and add @@ -39,6 +39,8 @@ # python -c "import numpy as np; np.show_config()" # runscripts/debug/numpy_benchmark.py # python -c "import scipy; scipy.__config__.show()" +# python -c "import aesara; print(aesara.config.blas.ldflags)" +# python runscripts/debug/summarize_environment.py # OPENBLAS_NUM_THREADS=1 python -m wholecell.tests.utils.test_library_performance # ## Build the Cython code: @@ -46,7 +48,7 @@ # Installers pip>=23.1 -setuptools>=67.6.1 +setuptools==73.0.1 # setuptools>=74.0.0 breaks aesara (via distutils changes?) virtualenv>=20.21.0 virtualenv-clone>=0.5.7 virtualenvwrapper>=4.8.4 diff --git a/wholecell/tests/utils/test_blas.py b/wholecell/tests/utils/test_blas.py index 978289c14..a553e4cd0 100755 --- a/wholecell/tests/utils/test_blas.py +++ b/wholecell/tests/utils/test_blas.py @@ -12,9 +12,10 @@ Any of these ways works to run this test. The first one is quiet if the test passes. The others always show stdout: - pytest wholecell/tests/utils/test_blas.py - python -m wholecell.tests.utils.test_blas - wholecell/tests/utils/test_blas.py + pytest wholecell/tests/utils/test_blas.py DOT # measures a dot product speed + pytest wholecell/tests/utils/test_blas.py # unit tests: time dot products with a range of threads + python -m wholecell.tests.utils.test_blas # unit tests + wholecell/tests/utils/test_blas.py # unit tests """ import os @@ -78,8 +79,10 @@ def test_dot_product(self): # Issue #931: The expected value came from Numpy's copy of openblas on # Intel CPUs on Sherlock, Mac, and Linux. But: # + # * Intel CPU on Mac using Accelerate or OpenBlas computed 0.016683805584112754 # * Apple M1 CPU on Mac computed 0.01668380558411259 # * Intel CPU on WSL on Windows computed 0.016683805584112667 + # * Intel CPU on Sherlock using openblas/0.3.28 also computed 0.016683805584112667 # # Reproducible simulations require reproducible floating point results, # but that might be unachievable across platforms. From 62aea721d7454fdfdd30c411577725bbb7bbfce6 Mon Sep 17 00:00:00 2001 From: mpg19 <151061490+mpg19@users.noreply.github.com> Date: Thu, 17 Oct 2024 15:40:57 -0700 Subject: [PATCH 26/34] Added supplemental source. (#1457) --- reconstruction/ecoli/flat/protein_half_lives_n_end_rule.tsv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/reconstruction/ecoli/flat/protein_half_lives_n_end_rule.tsv b/reconstruction/ecoli/flat/protein_half_lives_n_end_rule.tsv index 331688ff8..3c4ac0184 100644 --- a/reconstruction/ecoli/flat/protein_half_lives_n_end_rule.tsv +++ b/reconstruction/ecoli/flat/protein_half_lives_n_end_rule.tsv @@ -1,4 +1,4 @@ -# Half lives of protein monomers are determined by the identity of their amino-terminal residues. Slow degradation is assumed for P and U. (Tobias et al, 1986) +# Half lives of protein monomers are determined by the identity of their amino-terminal residues. Slow degradation is assumed for P and U. (Tobias et al., 1986 & Tobias et al., 1991) "aa_code" "aa_id" "half life (units.min)" "A" "L-ALPHA-ALANINE[c]" 600 "R" "ARG[c]" 2 From 9e5728ecd00f5ca46b073ac6fc6819d07476e7b8 Mon Sep 17 00:00:00 2001 From: ioanagherman Date: Thu, 7 Nov 2024 11:25:06 +0000 Subject: [PATCH 27/34] master with vio pathway conflicts with remote branch resolved --- models/ecoli/analysis/multigen/__init__.py | 2 +- .../flux_external_metabolic_pathway.py | 33 +++++++++++++++++++ .../multigen/molecules_external_pathway.py | 7 ++++ .../single/flux_external_metabolic_pathway.py | 22 ++++++++++++- .../single/molecules_external_pathway.py | 10 +++--- models/ecoli/listeners/fba_results.py | 6 ++-- .../processes/metabolism_external_pathway.py | 4 ++- .../sim/variants/new_gene_internal_shift.py | 5 +-- .../flat/new_gene_data/vioAE/metabolites.tsv | 3 ++ .../vioAE_less_genes/gene_sequences.tsv | 2 ++ .../new_gene_data/vioAE_less_genes/genes.tsv | 2 ++ .../vioAE_less_genes/insertion_location.tsv | 2 ++ .../metabolic_reactions_external.tsv | 1 + .../vioAE_less_genes/metabolites.tsv | 1 + .../protein_half_lives_measured.tsv | 1 + .../vioAE_less_genes/proteins.tsv | 2 ++ .../vioAE_less_genes/rna_half_lives.tsv | 1 + .../new_gene_data/vioAE_less_genes/rnas.tsv | 2 ++ .../metabolic_reactions_external.tsv | 9 +++++ reconstruction/ecoli/knowledge_base_raw.py | 4 +-- runscripts/fireworks/fw_queue.py | 2 +- 21 files changed, 107 insertions(+), 14 deletions(-) create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/gene_sequences.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/genes.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/insertion_location.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/metabolic_reactions_external.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/metabolites.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/protein_half_lives_measured.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/proteins.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/rna_half_lives.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/rnas.tsv diff --git a/models/ecoli/analysis/multigen/__init__.py b/models/ecoli/analysis/multigen/__init__.py index 5ee18d15a..72680b827 100644 --- a/models/ecoli/analysis/multigen/__init__.py +++ b/models/ecoli/analysis/multigen/__init__.py @@ -161,5 +161,5 @@ "new_gene_counts.py", "molecules_external_pathway.py", "flux_external_metabolic_pathway.py", - ], + ] } diff --git a/models/ecoli/analysis/multigen/flux_external_metabolic_pathway.py b/models/ecoli/analysis/multigen/flux_external_metabolic_pathway.py index 6ccd4ae9c..f9bee77e7 100644 --- a/models/ecoli/analysis/multigen/flux_external_metabolic_pathway.py +++ b/models/ecoli/analysis/multigen/flux_external_metabolic_pathway.py @@ -14,6 +14,10 @@ read_stacked_bulk_molecules, read_stacked_columns) from wholecell.io.tablereader import TableReader +from models.ecoli.processes.metabolism import ( + COUNTS_UNITS, VOLUME_UNITS, TIME_UNITS, MASS_UNITS) +from wholecell.utils import units + class Plot(multigenAnalysisPlot.MultigenAnalysisPlot): def do_plot(self, seedOutDir, plotOutDir, plotOutFileName, simDataFile, @@ -26,6 +30,7 @@ def do_plot(self, seedOutDir, plotOutDir, plotOutFileName, simDataFile, return cell_paths = self.ap.get_cells() + sim_dir = cell_paths[0] plt.figure() #for sim_dir in cell_paths: @@ -39,6 +44,34 @@ def do_plot(self, seedOutDir, plotOutDir, plotOutFileName, simDataFile, label='Flux ' + str(m)) plt.xlabel("Time (min)") plt.ylabel("Fluxes (mmol/L/sec)") + + cell_density = sim_data.constants.cell_density + plt.figure() + + # Calculate coefficients to be used to convert flux units from + # mM/s to mmol/gCDW/h + cell_mass = read_stacked_columns( + cell_paths, 'Mass', 'cellMass', ignore_exception=True) + dry_mass = read_stacked_columns( + cell_paths, 'Mass', 'dryMass', ignore_exception=True) + conversion_coeffs = ( + dry_mass / cell_mass + * cell_density.asNumber(MASS_UNITS / VOLUME_UNITS) + ) + + # Load data + time = read_stacked_columns(cell_paths, 'Main', 'time') + fluxes_external_pathway = ((COUNTS_UNITS / MASS_UNITS / TIME_UNITS) + * (read_stacked_columns(cell_paths, 'FBAResults', 'externalPathwayFluxes')/ conversion_coeffs) + ).asNumber(units.mmol / units.g / units.h) + reaction_id = sim_data.process.metabolism_external_pathway.rxn_ids + + # Fluxes plots + for m in range(fluxes_external_pathway.shape[1]): + plt.plot(time / 60., fluxes_external_pathway[:, m], + label='Flux ' + str(reaction_id[m])) + plt.xlabel("Time (min)") + plt.ylabel("Fluxes (mmol/gCDW/h)") plt.title("External Metabolic Pathway Fluxes") plt.legend() ### Create Plot ### diff --git a/models/ecoli/analysis/multigen/molecules_external_pathway.py b/models/ecoli/analysis/multigen/molecules_external_pathway.py index e744a911a..1c3bb88b6 100644 --- a/models/ecoli/analysis/multigen/molecules_external_pathway.py +++ b/models/ecoli/analysis/multigen/molecules_external_pathway.py @@ -40,6 +40,12 @@ def do_plot(self, seedOutDir, plotOutDir, plotOutFileName, simDataFile, with open(os.path.join(simOutDir, 'BulkMolecules', 'attributes.json')) as f: data = json.load(f, object_pairs_hook=OrderedDict) data_b = data['objectNames'] + plt.figure() + + # Load data + time = read_stacked_columns(cell_paths, 'Main', 'time') + bulk_molecules = read_stacked_bulk_molecules(cell_paths, molecule_names) + # Molecule counts plt.figure() plt.xlabel("Time (min)") @@ -49,6 +55,7 @@ def do_plot(self, seedOutDir, plotOutDir, plotOutFileName, simDataFile, plt.subplot(int(math.sqrt(len(molecule_names)))+1, int(math.sqrt(len(molecule_names)))+1, m+1) molecule_couts = bulk_molecules[:, data_b.index(molecule_names[m])] plt.plot(time / 60., molecule_couts) + plt.plot(time / 60., bulk_molecules[0][:,m]) plt.ylabel('\n'.join(molecule_names[m].split('-'))) ### Create Plot ### diff --git a/models/ecoli/analysis/single/flux_external_metabolic_pathway.py b/models/ecoli/analysis/single/flux_external_metabolic_pathway.py index 9c7305ba5..ab34127a3 100644 --- a/models/ecoli/analysis/single/flux_external_metabolic_pathway.py +++ b/models/ecoli/analysis/single/flux_external_metabolic_pathway.py @@ -11,7 +11,7 @@ from models.ecoli.analysis import singleAnalysisPlot from models.ecoli.processes.metabolism import COUNTS_UNITS, VOLUME_UNITS, TIME_UNITS, MASS_UNITS -from wholecell.analysis.analysis_tools import exportFigure, read_bulk_molecule_counts +from wholecell.analysis.analysis_tools import exportFigure, read_bulk_molecule_counts, read_stacked_columns from wholecell.io.tablereader import TableReader from wholecell.utils import units @@ -39,6 +39,26 @@ def do_plot(self, simOutDir, plotOutDir, plotOutFileName, simDataFile, validatio plt.plot(time / 60., fluxes_external_pathway[:, m], label='Flux '+ str(m)) plt.xlabel("Time (min)") plt.ylabel("Fluxes (mmol/L/sec)") + + # Calculate coefficients to be used to convert flux units from + # mM/s to mmol/gCDW/h + mass_listener = TableReader(os.path.join(simOutDir, "Mass")) + cell_mass = mass_listener.readColumn("cellMass") + dry_mass = mass_listener.readColumn("dryMass") + coefficient = dry_mass / cell_mass * sim_data.constants.cell_density.asNumber(MASS_UNITS / VOLUME_UNITS) + + # Load data + time = main_reader.readColumn('time') - initial_time + fluxes_external_pathway = ((COUNTS_UNITS / MASS_UNITS / TIME_UNITS) * (fba_results.readColumn('externalPathwayFluxes').T / coefficient).T).asNumber(units.mmol / units.g / units.h) + reaction_id = sim_data.process.metabolism_external_pathway.rxn_ids + + # Fluxes + plt.figure() + print(fluxes_external_pathway) + for m in range(fluxes_external_pathway.shape[1]): + plt.plot(time / 60., fluxes_external_pathway[:, m], label='Flux '+ str(reaction_id[m])) + plt.xlabel("Time (min)") + plt.ylabel("Fluxes (mmol/gCDW/h)") plt.title("External Metabolic Pathway Fluxes") plt.legend() diff --git a/models/ecoli/analysis/single/molecules_external_pathway.py b/models/ecoli/analysis/single/molecules_external_pathway.py index cc2a0f3e5..112c8bd0a 100644 --- a/models/ecoli/analysis/single/molecules_external_pathway.py +++ b/models/ecoli/analysis/single/molecules_external_pathway.py @@ -29,15 +29,16 @@ def do_plot(self, simOutDir, plotOutDir, plotOutFileName, simDataFile, validatio # Listeners used main_reader = TableReader(os.path.join(simOutDir, 'Main')) initial_time = main_reader.readAttribute('initialTime') - bulk_molecules_table = TableReader(os.path.join(simOutDir, 'BulkMolecules')) - # Load data - time = main_reader.readColumn('time') - initial_time - bulk_molecules = bulk_molecules_table.readColumn('counts') with open(os.path.join(simOutDir, 'BulkMolecules', 'attributes.json')) as f: data = json.load(f, object_pairs_hook=OrderedDict) data_b = data['objectNames'] + + # Load data + time = main_reader.readColumn('time') - initial_time + (bulk_molecules, ) = read_bulk_molecule_counts(simOutDir, molecule_names) + # Molecule counts plt.figure() plt.xlabel("Time (min)") @@ -46,6 +47,7 @@ def do_plot(self, simOutDir, plotOutDir, plotOutFileName, simDataFile, validatio for m in range(len(molecule_names)): plt.subplot(int(math.sqrt(len(molecule_names)))+1, int(math.sqrt(len(molecule_names)))+1, m+1) molecule_couts = bulk_molecules[:, data_b.index(molecule_names[m])] + plt.plot(time / 60., molecule_couts) plt.ylabel('\n'.join(molecule_names[m].split('-'))) diff --git a/models/ecoli/listeners/fba_results.py b/models/ecoli/listeners/fba_results.py index 086bdb611..e3787805e 100644 --- a/models/ecoli/listeners/fba_results.py +++ b/models/ecoli/listeners/fba_results.py @@ -105,7 +105,8 @@ def allocate(self): self.uptake_constraints = [np.nan] * len(self.all_external_exchange_molecules) # Args for external pathway - self.externalPathwayFluxes = [np.nan] * self.n_reactions_external + + self.externalPathwayFluxes = np.zeros(self.n_reactions_external) def update(self): # Compile reaction fluxes to those of base reactions @@ -168,5 +169,6 @@ def tableAppend(self, tableWriter): unconstrained_molecules=self.unconstrained_molecules, constrained_molecules=self.constrained_molecules, uptake_constraints=self.uptake_constraints, - externalPathwayFluxes=self.externalPathwayFluxes + + externalPathwayFluxes=self.externalPathwayFluxes, ) diff --git a/models/ecoli/processes/metabolism_external_pathway.py b/models/ecoli/processes/metabolism_external_pathway.py index ec0b7fc7b..96b837469 100644 --- a/models/ecoli/processes/metabolism_external_pathway.py +++ b/models/ecoli/processes/metabolism_external_pathway.py @@ -14,7 +14,6 @@ TIME_UNITS = units.s COUNTS_UNITS = units.mmol MASS_UNITS = units.g -TIME_UNITS = units.s VOLUME_UNITS = units.L CONC_UNITS = COUNTS_UNITS / VOLUME_UNITS CONVERSION_UNITS = MASS_UNITS * TIME_UNITS / VOLUME_UNITS @@ -52,7 +51,10 @@ def initialize(self, sim, sim_data): self.molecules = self.bulkMoleculesView(self.molecule_names) enzyme_names = sum(sim_data.process.metabolism_external_pathway.enzymes.values(), []) + + print('Enzyme ', enzyme_names) self.clean_enzyme = sorted([*set(list(filter(lambda item: item is not None, enzyme_names)))]) + print('Clean enzyme ', self.clean_enzyme) self.enzymes = self.bulkMoleculesView(self.clean_enzyme) self.bulkMoleculesRequestPriorityIs(REQUEST_PRIORITY_METABOLISM) diff --git a/models/ecoli/sim/variants/new_gene_internal_shift.py b/models/ecoli/sim/variants/new_gene_internal_shift.py index ebefc424d..2ef34fa06 100644 --- a/models/ecoli/sim/variants/new_gene_internal_shift.py +++ b/models/ecoli/sim/variants/new_gene_internal_shift.py @@ -60,7 +60,7 @@ # NOTE: If these values are greater than the number of generations you are # running, you will not see their effects. # OPTION: Set = -1 to skip induction or knockout shifts. -NEW_GENE_INDUCTION_GEN = 1 # Generation index to induce new gene expression +NEW_GENE_INDUCTION_GEN = 2 # Generation index to induce new gene expression NEW_GENE_KNOCKOUT_GEN = -1 # Generation index to knock out new gene expression assert NEW_GENE_INDUCTION_GEN != 0, ( "New genes must be induced after the first generation.") @@ -71,7 +71,8 @@ # The variant index will be split into an index for each of these lists # which are written to simulation metadata for later use in analysis scripts -NEW_GENE_EXPRESSION_FACTORS = [0, 9, 10] + +NEW_GENE_EXPRESSION_FACTORS = [0, 7] NEW_GENE_TRANSLATION_EFFICIENCY_VALUES = [1] SEPARATOR = len(NEW_GENE_TRANSLATION_EFFICIENCY_VALUES) diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE/metabolites.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE/metabolites.tsv index 28b416b37..8f98fee5a 100644 --- a/reconstruction/ecoli/flat/new_gene_data/vioAE/metabolites.tsv +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE/metabolites.tsv @@ -1,2 +1,5 @@ "id" "common_name" "synonyms" "chemical_formula" "mw" "molecular_charge" "_smiles" +<<<<<<< HEAD +======= +>>>>>>> 7b03a6071 (master with vio pathway) diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/gene_sequences.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/gene_sequences.tsv new file mode 100644 index 000000000..fcfb4baf0 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/gene_sequences.tsv @@ -0,0 +1,2 @@ +"id" "symbol" "synonyms" "gene_seq" +"NG003" "vioC" ["vioC"] "ATGAAACGTGCGATTATCGTTGGTGGCGGCCTGGCGGGTGGCCTGACCGCGATCTACCTGGCGAAGCGTGGCTACGAAGTGCACGTCGTGGAGAAGCGTGGTGATCCTCTGCGCGATCTGAGCTCTTACGTGGACGTTGTTAGCAGCCGTGCGATCGGCGTGAGCATGACCGTTCGTGGTATCAAGAGCGTTTTGGCTGCGGGCATTCCGCGTGCAGAGCTGGATGCGTGTGGCGAACCGATCGTGGCAATGGCTTTCTCCGTGGGTGGTCAGTATCGCATGCGCGAACTGAAGCCGTTGGAGGATTTCCGTCCGCTGAGCTTGAACCGTGCGGCGTTTCAAAAGCTGCTGAACAAATACGCGAACCTGGCAGGCGTTCGTTACTACTTTGAGCATAAGTGCCTGGATGTTGACCTGGATGGTAAGAGCGTGTTGATTCAGGGCAAAGATGGTCAGCCGCAGCGTCTGCAAGGTGACATGATTATCGGTGCGGATGGCGCCCACAGCGCCGTCCGTCAGGCGATGCAGAGCGGCCTGCGTCGTTTCGAGTTCCAGCAAACGTTCTTCCGCCATGGCTACAAAACCCTGGTTTTGCCGGACGCGCAAGCACTGGGTTACCGTAAAGACACGCTGTACTTTTTCGGCATGGATTCCGGTGGCCTGTTCGCGGGTCGTGCGGCTACGATCCCAGATGGTAGCGTCAGCATCGCCGTTTGCCTGCCGTACTCGGGTAGCCCTTCCCTGACGACCACCGACGAACCGACGATGCGTGCGTTCTTCGATCGTTACTTCGGTGGCCTGCCGCGTGACGCGCGTGACGAAATGCTGCGTCAGTTTCTGGCGAAGCCGAGCAACGACCTGATTAACGTGCGCTCTAGCACCTTTCACTATAAGGGTAATGTGCTGTTGCTGGGTGATGCTGCGCATGCGACTGCGCCGTTCCTGGGTCAGGGTATGAACATGGCGCTGGAGGACGCCCGCACGTTTGTCGAGCTGCTGGACCGCCACCAGGGCGACCAAGACAAAGCCTTTCCGGAGTTCACGGAGCTGCGCAAAGTCCAGGCAGACGCAATGCAAGACATGGCTCGCGCCAACTATGACGTTTTGAGCTGCTCGAACCCGATCTTTTTCATGCGTGCGCGTTACACGCGTTACATGCATTCCAAGTTTCCGGGCCTGTATCCGCCGGATATGGCCGAGAAACTGTACTTTACGAGCGAGCCGTACGATCGTCTGCAACAAATCCAGCGTAAACAGAATGTTTGGTACAAGATTGGTCGCGTGAATTGA" diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/genes.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/genes.tsv new file mode 100644 index 000000000..1fc41ae8d --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/genes.tsv @@ -0,0 +1,2 @@ +"id" "symbol" "synonyms" "left_end_pos" "right_end_pos" "direction" "rna_ids" +"NG003" "vioC" ["vioC"] 0 1289 "+" ["NG003_RNA"] diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/insertion_location.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/insertion_location.tsv new file mode 100644 index 000000000..98d8f4a6d --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/insertion_location.tsv @@ -0,0 +1,2 @@ +"subdirectory" "insertion_pos" "direction" +"vioC" 400000 "+" diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/metabolic_reactions_external.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/metabolic_reactions_external.tsv new file mode 100644 index 000000000..66b4676c9 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/metabolic_reactions_external.tsv @@ -0,0 +1 @@ +"id" "stoichiometry" "direction" "catalyzed_by" "substrate" "kcat" "km" diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/metabolites.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/metabolites.tsv new file mode 100644 index 000000000..259b1445b --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/metabolites.tsv @@ -0,0 +1 @@ +"id" "common_name" "synonyms" "chemical_formula" "mw" "molecular_charge" "_smiles" diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/protein_half_lives_measured.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/protein_half_lives_measured.tsv new file mode 100644 index 000000000..19efd4227 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/protein_half_lives_measured.tsv @@ -0,0 +1 @@ +"id" "half life (units.min)" "_comments" diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/proteins.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/proteins.tsv new file mode 100644 index 000000000..3f00d6a40 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/proteins.tsv @@ -0,0 +1,2 @@ +"id" "common_name" "synonyms" "seq" "experimental_compartment" "computational_compartment" "cleavage_of_initial_methionine" "selenocysteine_at_opal" "protein_feature_cofactors" "in_complex" +"NG-VioC-MONOMER" "VioC" ["VioC"] "MKRAIIVGGGLAGGLTAIYLAKRGYEVHVVEKRGDPLRDLSSYVDVVSSRAIGVSMTVRGIKSVLAAGIPRAELDACGEPIVAMAFSVGGQYRMRELKPLEDFRPLSLNRAAFQKLLNKYANLAGVRYYFEHKCLDVDLDGKSVLIQGKDGQPQRLQGDMIIGADGAHSAVRQAMQSGLRRFEFQQTFFRHGYKTLVLPDAQALGYRKDTLYFFGMDSGGLFAGRAATIPDGSVSIAVCLPYSGSPSLTTTDEPTMRAFFDRYFGGLPRDARDEMLRQFLAKPSNDLINVRSSTFHYKGNVLLLGDAAHATAPFLGQGMNMALEDARTFVELLDRHQGDQDKAFPEFTELRKVQADAMQDMARANYDVLSCSNPIFFMRARYTRYMHSKFPGLYPPDMAEKLYFTSEPYDRLQQIQRKQNVWYKIGRVN" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/rna_half_lives.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/rna_half_lives.tsv new file mode 100644 index 000000000..b63b12ddd --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/rna_half_lives.tsv @@ -0,0 +1 @@ +"id" "half_life (units.min)" diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/rnas.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/rnas.tsv new file mode 100644 index 000000000..0442872f7 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_less_genes/rnas.tsv @@ -0,0 +1,2 @@ +"id" "common_name" "synonyms" "type" "modified_forms" "gene_id" "monomer_ids" "anticodon" "coding_segments" +"NG003_RNA" "vioC" ["vioC"] "mRNA" [] "NG003" ["NG-VioC-MONOMER"] null [] diff --git a/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolic_reactions_external.tsv b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolic_reactions_external.tsv index b5ea9f176..c07e35ac0 100644 --- a/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolic_reactions_external.tsv +++ b/reconstruction/ecoli/flat/new_gene_data/vioAE_meta/metabolic_reactions_external.tsv @@ -1,7 +1,16 @@ "id" "stoichiometry" "direction" "catalyzed_by" "substrate" "kcat" "km" +<<<<<<< HEAD "rxnvio1" {"TRP[c]": -1, "OXYGEN-MOLECULE[c]": -1, "CPD-11890[c]": 1, "HYDROGEN-PEROXIDE[c]": 1, "PROTON[c]": 1} "L2R" ["NG-VioA-MONOMER[c]"] ["TRP[c]"] 3.38 0.031 "rxnvio2" {"CPD-11890[c]": -2, "HYDROGEN-PEROXIDE[c]": -1, "CPD-19471[c]": 1, "WATER[c]": 2} "L2R" ["NG-VioB-MONOMER[c]"] ["CPD-11890[c]"] 0.21 0.02 "rxnvio3" {"CPD-19471[c]": -1, "PROTON[c]": -2, "CPD-14320[c]": 1, "AMMONIUM[c]": 1, "CARBON-DIOXIDE[c]": 1} "L2R" ["NG-VioE-MONOMER[c]"] ["CPD-19471[c]"] 0.116 0.007 "rxnvio4" {"CPD-14320[c]": -1, "NADH[c]": -1, "PROTON[c]": -1, "OXYGEN-MOLECULE[c]": -1, "CPD-14319[c]": 1, "NAD[c]": 1, "WATER[c]": 1} "L2R" ["NG-VioD-MONOMER[c]"] ["CPD-14320[c]"] 0.035 0.001 "rxnvio5" {"CPD-14320[c]": -1, "NADH[c]": -1, "PROTON[c]": -1, "OXYGEN-MOLECULE[c]": -1, "CPD-14323[c]": 1, "NAD[c]": 1, "WATER[c]": 1} "L2R" ["NG-VioC-MONOMER[c]"] ["CPD-14320[c]"] 0.013 0.001 "rxnvio6" {"CPD-14319[c]": -1, "NADH[c]": -1, "OXYGEN-MOLECULE[c]": -1, "PROTON[c]": -1, "CPD-14324[c]": 1, "NAD[c]": 1, "WATER[c]": 1} "L2R" ["NG-VioC-MONOMER[c]"] ["CPD-14319[c]"] 0.013 0.001 +======= +"rxnvio1" {"TRP[c]": -1, "OXYGEN-MOLECULE[c]": -1, "CPD-11890[c]": 1, "HYDROGEN-PEROXIDE[c]": 1, "PROTON[c]": 1} "L2R" ["NG-VioA-MONOMER[c]"] ["TRP[c]"] 3.38 31 +"rxnvio2" {"CPD-11890[c]": -2, "HYDROGEN-PEROXIDE[c]": -1, "CPD-19471[c]": 1, "WATER[c]": 2} "L2R" ["NG-VioB-MONOMER[c]"] ["CPD-11890[c]"] 0.21 20 +"rxnvio3" {"CPD-19471[c]": -1, "PROTON[c]": -2, "CPD-14320[c]": 1, "AMMONIUM[c]": 1, "CARBON-DIOXIDE[c]": 1} "L2R" ["NG-VioE-MONOMER[c]"] ["CPD-19471[c]"] 0.116 7 +"rxnvio4" {"CPD-14320[c]": -1, "NADH[c]": -1, "PROTON[c]": -1, "OXYGEN-MOLECULE[c]": -1, "CPD-14319[c]": 1, "NAD[c]": 1, "WATER[c]": 1} "L2R" ["NG-VioD-MONOMER[c]"] ["CPD-14320[c]"] 0.035 1 +"rxnvio5" {"CPD-14320[c]": -1, "NADH[c]": -1, "PROTON[c]": -1, "OXYGEN-MOLECULE[c]": -1, "CPD-14323[c]": 1, "NAD[c]": 1, "WATER[c]": 1} "L2R" ["NG-VioC-MONOMER[c]"] ["CPD-14320[c]"] 0.013 1 +"rxnvio6" {"CPD-14319[c]": -1, "NADH[c]": -1, "OXYGEN-MOLECULE[c]": -1, "PROTON[c]": -1, "CPD-14324[c]": 1, "NAD[c]": 1, "WATER[c]": 1} "L2R" ["NG-VioC-MONOMER[c]"] ["CPD-14319[c]"] 0.013 1 +>>>>>>> 7b03a6071 (master with vio pathway) diff --git a/reconstruction/ecoli/knowledge_base_raw.py b/reconstruction/ecoli/knowledge_base_raw.py index 499bc8d9f..d68af4533 100644 --- a/reconstruction/ecoli/knowledge_base_raw.py +++ b/reconstruction/ecoli/knowledge_base_raw.py @@ -241,7 +241,6 @@ def __init__(self, operons_on: bool, remove_rrna_operons: bool, remove_rrff: boo self.list_of_dict_filenames.append( os.path.join(new_gene_path, 'metabolic_reactions_external.tsv')) - # These files need to be joined to existing files new_gene_shared_files = [ 'genes', @@ -249,7 +248,7 @@ def __init__(self, operons_on: bool, remove_rrna_operons: bool, remove_rrff: boo 'proteins', 'rna_half_lives', 'protein_half_lives_measured', - 'metabolites' + 'metabolites', ] for f in new_gene_shared_files: @@ -294,6 +293,7 @@ def __init__(self, operons_on: bool, remove_rrna_operons: bool, remove_rrff: boo self.added_data = self.new_gene_added_data self._join_data() + print('New version ') def _load_tsv(self, dir_name, file_name): path = self diff --git a/runscripts/fireworks/fw_queue.py b/runscripts/fireworks/fw_queue.py index d66f0667e..2d614fae2 100644 --- a/runscripts/fireworks/fw_queue.py +++ b/runscripts/fireworks/fw_queue.py @@ -341,7 +341,7 @@ def log_info(message): print(message) -OUT_DIRECTORY = filepath.makedirs(filepath.ROOT_PATH, "out") +OUT_DIRECTORY = '/user/work/ig13470/out/' CACHED_SIM_DATA_DIRECTORY = os.path.join(filepath.ROOT_PATH, "cached") SUBMISSION_TIME = filepath.timestamp() From a162d8bc788ea9196885a63ae0c258094e868b3b Mon Sep 17 00:00:00 2001 From: Kieren Sharma Date: Sun, 12 Jan 2025 14:00:15 +0000 Subject: [PATCH 28/34] bpsA scripts --- reconstruction/ecoli/flat/new_gene_data/bpsA/gene_sequences.tsv | 2 ++ reconstruction/ecoli/flat/new_gene_data/bpsA/genes.tsv | 2 ++ .../ecoli/flat/new_gene_data/bpsA/insertion_location.tsv | 2 ++ .../flat/new_gene_data/bpsA/metabolic_reactions_external.tsv | 2 ++ reconstruction/ecoli/flat/new_gene_data/bpsA/metabolites.tsv | 2 ++ .../flat/new_gene_data/bpsA/protein_half_lives_measured.tsv | 1 + reconstruction/ecoli/flat/new_gene_data/bpsA/proteins.tsv | 2 ++ reconstruction/ecoli/flat/new_gene_data/bpsA/rna_half_lives.tsv | 1 + reconstruction/ecoli/flat/new_gene_data/bpsA/rnas.tsv | 2 ++ 9 files changed, 16 insertions(+) create mode 100644 reconstruction/ecoli/flat/new_gene_data/bpsA/gene_sequences.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/bpsA/genes.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/bpsA/insertion_location.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/bpsA/metabolic_reactions_external.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/bpsA/metabolites.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/bpsA/protein_half_lives_measured.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/bpsA/proteins.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/bpsA/rna_half_lives.tsv create mode 100644 reconstruction/ecoli/flat/new_gene_data/bpsA/rnas.tsv diff --git a/reconstruction/ecoli/flat/new_gene_data/bpsA/gene_sequences.tsv b/reconstruction/ecoli/flat/new_gene_data/bpsA/gene_sequences.tsv new file mode 100644 index 000000000..ce81e5118 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/bpsA/gene_sequences.tsv @@ -0,0 +1,2 @@ +"id" "symbol" "synonyms" "gene_seq" +"NG001" "bpsA" ["bpsA"] "GGATCCTGACGATCGACCTGCACGCAGACCAGATCCAGGGATTCTTCGACGGCCCGGTGGACCACCTGTTCGCCATGCCGGTCCTCGCGGACTACATCGGCTCCAAGGTGGACCGCGAGGCGCTGACCGTGGTCTCGCCCGACGCCGGCCGCGTGCGCGTGGCCGACGGCTGGTGCGACCGCCTCGGCGCTCCGCTGGCCATCGTCCACAAGCGGCGCGACAAGGACGTGGCCCACCAGGTGACCGCCCACGAGGTGGTCGGCGAGGTCCGCGACCGGGTCTGCGTCCTGGTCGACGACATGATCGACACGGGCGGCACGATCTGCGCCGCCGCCGACGCCCTCTTCGCGCAGGGGGCGCGGGACGTCATCGTGGCGGCCACGCACGGGGTCCTCTCCGGCCCCGCGGCGGACCGCCTGAAGAACTCGCAGGTGAGCGAGTTCGTGTTCACGGACACCCTGCCGGTGCCCGGGGCCCTCGGACTGGACAAGGTCACCGTCCTGTCCATCGCCCCGCTGATCGCCGGCGCCTCGCGCGCGGTGTTCGAGAACGGATCTGTCACCCGGCTCCTGCAGAGCCGGTGATCGCCCGGGCGGACGGGCCCGACGGGGCCCGTCCGTCCGAAGGGGGAGGCGGCCGCACGCATCGAGCCGCTCCACAACGGATCGTCATAAGGAAGCGGGAAATGACTCTTCAGGAGACCAGCGTGCTCGAGCCCACCCTGCAGGGGACCACCACGTTGCCCGGCCTGCTCGCCCAGCGGGTGGCCGAACACCCCGAGGCGATCGCGGTCGCCTACCGGGACGACAAGCTCACCTTCCGCGAGCTCGCGTCCAGAAGCGCGGCCCTCGCCGACTACCTGGAGCACCTCGGTGTCTCCGCCGACGACTGCGTCGGCCTGTTCGTCGAGCCGTCGATCGACCTGATGGTCGGCGCCTGGGGCATCCTCAACGCCGGCGCCGCGTACCTGCCGCTGTCCCCGGAGTACCCCGAGGACCGGCTGCGCTACATGATCGAGAACAGCGAGACGAAGATCATCCTGGCGCAGCAGCGCCTGGTGTCCCGTCTGCGCGAGCTCGCGCCGAAGGACGTCACCATCGTGACCCTGCGCGAGTCCGAGGCCTTCGTCCGCCCCGAGGGCACCGAGGCCCCGGCCGCCCGCAGCGCCCGCCCGGACACCCTCGCGTACGTCATCTACACCTCCGGCAGCACGGGCAAGCCGAAGGGTGTGATGATCGAGCACCGCAGCATCGTCAACCAGCTCGGCTGGCTGCGCGAGACCTACGCGATCGACCGCAGCAAGGTCATCCTCCAGAAGACCCCGATGAGCTTCGACGCCGCCCAGTGGGAGATCCTCTCCCCGGCCAACGGCGCCACCGTCGTCATGGGCGCCCCGGGCGTCTACGCCGACCCCGAGGGCCTCATCGAGACCATCGTCAAGCACAACGTGACCACCCTCCAGTGCGTCCCGACGCTGCTCCAGGGTCTGATCGACACCGAGAAGTTCCCCGAGTGCGTCTCCCTCCAGCAGATCTTCAGCGGTGGCGAGGCCCTCTCCCGCCTGCTGGCGATCCAGACCACGCAGGAGATGCCCGGCCGGGCGCTCATCAACGTCTACGGGCCGACCGAGACGACGATCAACTCGTCCTCGTTCCCCGTCGACCCCGCCGACCTGGACGAGGGACCGCAGTCCATCTCCATCGGCTCCCCGGTGCACGGCACCACGTACCACATCCTTGACAAGGAGACCCTCAAGCCGGTCGGCGTCGGTGAGATCGGCGAGCTGTACATCGGCGGCATCCAGCTGGCCCGCGGCTACCTGCACCGCGACGACCTGACCGCCGAGCGCTTCCTGGAGATCGAGCTCGAGGAGGGCGCCGAGCCCGTCCGCCTGTACAAGACGGGCGACCTCGGCCAGTGGAACAACGACGGCACCGTGCAGTTCGCCGGCCGCGCCGACAACCAGGTCAAGCTGCGCGGCTACCGCGTCGAGCTCGACGAGATATCCCTGGCGATCGAGAACCACGACTGGGTCCGCAACGCCGCCGTCATCGTCAAGAACGACGGCCGCACCGGCTTCCAGAACCTGATCGCCTGCATCGAGCTGAGCGAGAAGGAAGCCGCCCTGATGGACCAGGGCAACCACGGCTCCCACCACGCGTCGAAGAAGAGCAAGCTCCAGGTCAAGGCGCAGCTGTCCAACCCGGGCCTGCGCGACGACGCCGAGCTGGCCGCCCGCCCGGCCTTCGACCTGGAGGGCGCCGAGCCCACCCCCGAGCAGCGCGCCCGGGTCTTCGCCCGCAAGACGTACCGCTTCTACGAGGGCGGCGCCGTCACCCAGGCCGACCTGCTGGGCCTGCTGGGCGCCACGGTCACCGCCGGCTACTCGCGCAAGGCGGCCGACCTGGCCCCCGCCGAACTCGGCCAGATCCTGCGCTGGTTCGGCCAGTACATCAGCGAGGAGCGGCTCCTGCCGAAGTACGGCTACGCCTCCCCGGGCGCGCTGTACGCGACGCAGATGTACTTCGAGCTGGAGGGCGTCGGCGGTCTGAAGCCGGGCTACTACTACTACCAGCCGGTCCGCCACCAGCTCGTCCTCATCAGCGAGCGCGAGGCCACCGGCAAGGCCACGGCGCAGATCCACTTCATCGGCAAGAAGAGCGGCATCGAGCCGGTCTACAAGAACAACATCCTCGAGGTCCTGGAGATCGAGACCGGCCACATGGTCGGCCTCTTCGAGCAGATCCTGCCGGCCTACGGCCTCGACATCCACGACCGCGCCTACGAGCCGGCCGTCAAGGACCTGCTCGACGTCGCCGACGAGGACTACTACCTGGGCACCTTCGAGCTGGTCCCGCACGCGGGCGCGCGCGACGACCAGGCCGAGGTCTACGTCCAGACGCACGGCGGAAAGGTCGCCGGCCTGCCCGAGGGCCAGTACCGCTACGAGAACGGCGAGCTGACCCGCTTCTCGGACGACATCGTCCTCAAGAAGCACGTCATCGCGATCAACCAGTCGGTGTACCAGGCCGCCAGCTTCGGCATCAGCGTCTACAGCCGCGCCGAGGAGGAGTGGCTGAAGTACATCACCCTCGGCAAGAAGCTCCAGCACCTGATGATGAACGGGCTGAACCTGGGCTTCATGTCCTCGGGCTACAGCTCCAAGACGGGCAACCCGCTGCCGGCCTCGCGCCGCATGGACGCCGTCCTCGGCGCCAACGGCGTCGACAGCGCCCCGATGTACTTCTTCGTCGGCGGCCGCATCAGCGACGAGCAGATCGGCCACGAGGGCATGCGCGAGGACAGCGTCCACATGCGCGGTCCGGCCGAGCTCATCCGCGACGACCTCGTCAGCTTCCTCCCGGACTACATGATCCCCAACCGGGTCGTGGTCTTCGACCGGCTGCCGCTGTCCGCCAACGGCAAGATCGACGTCAAGGCGCTCGCCGCCTCCGACCAGGTCAACGCCGAGCTCGTCGAGCGCCCCTTCGTCGCCCCGCGCACGGAGACGGAGAAGGAGATCGCGGCGGTCTGGGAGAAGGCCCTGCGCCGCGAGAACGCCTCCGTCCAGGACGACTTCTTCGAGTCGGGCGGCAACTCGCTGATCGCCGTCGGCCTCGTCCGCGAGCTCAACGCGCGCCTGGGCGTCTCCCTGCCGCTGCAGAGCGTCCTGGAGTCCCCGACCATCGAGAAGCTGGCCCGCCGCCTGGAGCGCGAGGTCGCCCAGGAGTCCTCGCGCTTCGTCCGCCTGCACGCGGAGACCGGCAAGGCCCGGCCCGTGATCTGCTGGCCGGGTCTGGGCGGCTACCCGATGAACCTGCGCAGCCTGGCCGGCGAGATCGGCCTCGGCCGCTCGTTCTACGGCGTCCAGTCCTACGGCATCAACGAGGGCGAGACCCCGTACGAGACCATCACCGAGATGGCCAAGAAGGACATCGAGGCCCTCAAGGAGATCCAGCCGGCCGGCCCCTACACCCTGTGGGGCTACTCCTTCGGCGCCCGCGTGGCCTTCGAGACCGCCTACCAGCTGGAGCAGGCGGGCGAGAAGGTGGACAACCTCTTCCTGATCGCCCCGGGCTCCCCGAAGGTGCGCGCCGAGAACGGCAAGGTGTGGGGCCGCGAGGCGTCCTTCGCCAACCGCGGCTACACCACGATCCTGTTCTCGGTCTTCACCGGCACCATTTCCGGTCCGGACCTGGACCGGTGCCTGGAGACCGTGACGGACGAGGCCTCCTTCGCCGAGTTCATCAGCGAGCTCAAGGGAATCGACGTCGACCTCGCCCGCCGGATCATCTCGGTCGTGGGCCAGACGTACGAATTCGAGTACTCCTTCCACGAGCTGGCCGAGCGCACCCTCCAGGCGCCGATCAGCATCTTCAAGGCCGTGGGCGACGACTACTCGTTCCTGGAGAACAGCAGCGGCTACTCGGCCGAGCCGCCGACGGTCATCGACCTCGACGCCGACCACTACAGCCTGCTGCGCGAGGACATCGGCGAGCTGGTGAAGCACATCCGCTACCTGCTCGGCGAGTGACCGGGTAAGGAAAAGCGGGGCTGAATGAAGACGGCCGCCCCGCCGGAGAAATCCGGCGGGGCGGCCGTCTTTTCGCGTTTCACTCGGGGGAAATACCGGCCATCAGGTGGCTCGGTATGGCTCAATTCTGACGCAGATTGACCGCGTTCTGACATACCTCCTGTTGACGTCCACATTCCCCACACAAGACACTTCTATTGATTCCAGCCGTCCCGTTTTTTGTTGTTCTCGCTGATGAGGAGTCATCTTCCATGCGCTTCAATCTCATCGGCCCCTTCGAGATCGTCACCGACGACGGCAGGACCTACCAGCCCGGTACCCCCAAGGTCTGCCAGACGCTCGCCCTGCTGCTCACCCGGCCCGGCGAGATCGTCACGGCCGAGGCCCTCATCCGGGAGCTGTGGGGCGAGAAGCCCCCGCGCAGCGCCGTCACCACGCTCCAGACGTACGTCTACCACGCGCGCCGGATGTTCGCCCAGGAGGAGCTGGCGCCCCCGGGGCGCTGCCTGATCGTCACCGGCCCGTCGGGCTACGTGATGCGCGTCGAGGACTCCGAGGTCGACGTGCGGATCTTCGAGCGGCTCGTCACCCGGGCCCGGTACGAGCTGGCCGAGGAGGAGCCGCAGCGGGCGCTGCGCACGGTCGGCCAGGCGCTCGACCTGTGGCGGGGGCCCGCCCTGTCGAACTTCCCGGCCGGCGACGTGCTGGCCGGGCACGTGGTGCACCTGGAGGAGCTGCGGATCAGGGCCTTCGAGACCCGCATCGAGGCGCAGGAGGCGCTGGGGCGCCACCGCGAGTCCATCCCGGAGCTGCGCAAGCTGATCAACGACTACCCGCTCAACGAGTGGTTCCACAGCCGGCTCATCGGCGCGCTCGGTGCCGCCGGGCGGCGGGCGGAGGCCCTCCAGGCCTACCAGAAGGTGCGCCGGCTGCTCGCGGAGGAACTGGGCCTGGAGCCCTCCGCGGAGCTCAAGCGGCTCCACGGGCGGCTGCTGAGCCCGGCGCGCGGCGAGCGGTTCGTGGTGGGCGCGGCCGTCTGAGCCGCCCCCGTGGGGCGGGCGCCCGCCACGCATTCGAGCAGGGCTCCAGGGAGGTCGGAGACGGTCGCCCTTCCGGCCGTGCACGGGTCGTGCACGGGGCCGCACAAGAAGGAGACCGCATGTCCCGTCGTCTGTTCACCTCGGAGTCCGTGACCGAGGGTCACCCCGACAAGATCGCCGACCAGATCAGCGACACGATCCTGGACGCGCTGCTGCGCCAGGACCCGACCTCGCGCGTGGCCGTGGAGACCCTGATCACCACCGGTCTGGTGCACGTCGCGGGCGAGGTGACGACGAAGGCGTACGCCCCGATCGCCCAGCTCGTCCGCGAGCGGATCC" \ No newline at end of file diff --git a/reconstruction/ecoli/flat/new_gene_data/bpsA/genes.tsv b/reconstruction/ecoli/flat/new_gene_data/bpsA/genes.tsv new file mode 100644 index 000000000..31e5d9772 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/bpsA/genes.tsv @@ -0,0 +1,2 @@ +"id" "symbol" "synonyms" "left_end_pos" "right_end_pos" "direction" "rna_ids" +"NG001" "bpsA" ["bpsA"] 0 5912 "+" ["NG001_RNA"] \ No newline at end of file diff --git a/reconstruction/ecoli/flat/new_gene_data/bpsA/insertion_location.tsv b/reconstruction/ecoli/flat/new_gene_data/bpsA/insertion_location.tsv new file mode 100644 index 000000000..0536c04e0 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/bpsA/insertion_location.tsv @@ -0,0 +1,2 @@ +"subdirectory" "insertion_pos" "direction" +"bpsA" 400000 "+" \ No newline at end of file diff --git a/reconstruction/ecoli/flat/new_gene_data/bpsA/metabolic_reactions_external.tsv b/reconstruction/ecoli/flat/new_gene_data/bpsA/metabolic_reactions_external.tsv new file mode 100644 index 000000000..ff3b5ffd0 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/bpsA/metabolic_reactions_external.tsv @@ -0,0 +1,2 @@ +"id" "stoichiometry" "direction" "catalyzed_by" "substrate" "kcat" "km" +"RXN-24414" {"GLN[c]": -2, "ATP[c]": -2, "FMN[c]": -2, "OXYGEN-MOLECULE[c]": -1, "IND[c]": 1, "AMP[c]": 2, "FMNH2[c]": 2, "PPI[c]": 2, "WATER[c]": 2} "L2R" ["NG-MONOMER-124584[c]"] ["GLN[c]"] 5.4 0.0157 \ No newline at end of file diff --git a/reconstruction/ecoli/flat/new_gene_data/bpsA/metabolites.tsv b/reconstruction/ecoli/flat/new_gene_data/bpsA/metabolites.tsv new file mode 100644 index 000000000..6ab1d055a --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/bpsA/metabolites.tsv @@ -0,0 +1,2 @@ +"id" "common_name" "synonyms" "chemical_formula" "mw" "molecular_charge" "_smiles" +"IND" "INDIGOIDINE" [] "C10H8N4O4" 248.199 0 \ No newline at end of file diff --git a/reconstruction/ecoli/flat/new_gene_data/bpsA/protein_half_lives_measured.tsv b/reconstruction/ecoli/flat/new_gene_data/bpsA/protein_half_lives_measured.tsv new file mode 100644 index 000000000..19efd4227 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/bpsA/protein_half_lives_measured.tsv @@ -0,0 +1 @@ +"id" "half life (units.min)" "_comments" diff --git a/reconstruction/ecoli/flat/new_gene_data/bpsA/proteins.tsv b/reconstruction/ecoli/flat/new_gene_data/bpsA/proteins.tsv new file mode 100644 index 000000000..8a3306ba4 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/bpsA/proteins.tsv @@ -0,0 +1,2 @@ +"id" "common_name" "synonyms" "seq" "experimental_compartment" "computational_compartment" "cleavage_of_initial_methionine" "selenocysteine_at_opal" "protein_feature_cofactors" "in_complex" +"NG-MONOMER-124584" "BpsA" ["BpsA"] "MTLQETSVLEPTLQGTTTLPGLLAQRVAEHPEAIAVAYRDDKLTFRELASRSAALADYLEHLGVSADDCVGLFVEPSIDLMVGAWGILNAGAAYLPLSPEYPEDRLRYMIENSETKIILAQQRLVSRLRELAPKDVTIVTLRESEAFVRPEGTEAPAARSARPDTLAYVIYTSGSTGKPKGVMIEHRSIVNQLGWLRETYAIDRSKVILQKTPMSFDAAQWEILSPANGATVVMGAPGVYADPEGLIETIVKHNVTTLQCVPTLLQGLIDTEKFPECVSLQQIFSGGEALSRLLAIQTTQEMPGRALINVYGPTETTINSSSFPVDPADLDEGPQSISIGSPVHGTTYHILDKETLKPVGVGEIGELYIGGIQLARGYLHRDDLTAERFLEIELEEGAEPVRLYKTGDLGQWNNDGTVQFAGRADNQVKLRGYRVELDEISLAIENHDWVRNAAVIVKNDGRTGFQNLIACIELSEKEAALMDQGNHGSHHASKKSKLQVKAQLSNPGLRDDAELAARPAFDLEGAEPTPEQRARVFARKTYRFYEGGAVTQADLLGLLGATVTAGYSRKAADLAPAELGQILRWFGQYISEERLLPKYGYASPGALYATQMYFELEGVGGLKPGYYYYQPVRHQLVLISEREATGKATAQIHFIGKKSGIEPVYKNNILEVLEIETGHMVGLFEQILPAYGLDIHDRAYEPAVKDLLDVADEDYYLGTFELVPHAGARDDQAEVYVQTHGGKVAGLPEGQYRYENGELTRFSDDIVLKKHVIAINQSVYQAASFGISVYSRAEEEWLKYITLGKKLQHLMMNGLNLGFMSSGYSSKTGNPLPASRRMDAVLGANGVDSAPMYFFVGGRISDEQIGHEGMREDSVHMRGPAELIRDDLVSFLPDYMIPNRVVVFDRLPLSANGKIDVKALAASDQVNAELVERPFVAPRTETEKEIAAVWEKALRRENASVQDDFFESGGNSLIAVGLVRELNARLGVSLPLQSVLESPTIEKLARRLEREVAQESSRFVRLHAETGKARPVICWPGLGGYPMNLRSLAGEIGLGRSFYGVQSYGINEGETPYETITEMAKKDIEALKEIQPAGPYTLWGYSFGARVAFETAYQLEQAGEKVDNLFLIAPGSPKVRAENGKVWGREASFANRGYTTILFSVFTGTISGPDLDRCLETVTDEASFAEFISELKGIDVDLARRIISVVGQTYEFEYSFHELAERTLQAPISIFKAVGDDYSFLENSSGYSAEPPTVIDLDADHYSLLREDIGELVKHIRYLLGE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 \ No newline at end of file diff --git a/reconstruction/ecoli/flat/new_gene_data/bpsA/rna_half_lives.tsv b/reconstruction/ecoli/flat/new_gene_data/bpsA/rna_half_lives.tsv new file mode 100644 index 000000000..b63b12ddd --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/bpsA/rna_half_lives.tsv @@ -0,0 +1 @@ +"id" "half_life (units.min)" diff --git a/reconstruction/ecoli/flat/new_gene_data/bpsA/rnas.tsv b/reconstruction/ecoli/flat/new_gene_data/bpsA/rnas.tsv new file mode 100644 index 000000000..71fdbe6d2 --- /dev/null +++ b/reconstruction/ecoli/flat/new_gene_data/bpsA/rnas.tsv @@ -0,0 +1,2 @@ +"id" "common_name" "synonyms" "type" "modified_forms" "gene_id" "monomer_ids" "anticodon" "coding_segments" +"NG001_RNA" "bpsA" ["bpsA"] "mRNA" [] "NG001" ["NG-BpsA-MONOMER"] null [] \ No newline at end of file From ff1dd9fa3839ce0a532b9f3960bf92cba0cc5a36 Mon Sep 17 00:00:00 2001 From: Kieren Sharma Date: Sun, 12 Jan 2025 14:02:11 +0000 Subject: [PATCH 29/34] Changed output dir --- runscripts/fireworks/fw_queue.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/runscripts/fireworks/fw_queue.py b/runscripts/fireworks/fw_queue.py index 2d614fae2..a57cb3266 100644 --- a/runscripts/fireworks/fw_queue.py +++ b/runscripts/fireworks/fw_queue.py @@ -341,7 +341,7 @@ def log_info(message): print(message) -OUT_DIRECTORY = '/user/work/ig13470/out/' +OUT_DIRECTORY = '/user/work/co18263/out/' CACHED_SIM_DATA_DIRECTORY = os.path.join(filepath.ROOT_PATH, "cached") SUBMISSION_TIME = filepath.timestamp() From 0c1e0011e106b3f00f602257d82fd6ed2574796f Mon Sep 17 00:00:00 2001 From: Kieren Sharma Date: Sun, 12 Jan 2025 14:02:18 +0000 Subject: [PATCH 30/34] bpsA --- runscripts/external_pathway/bpsA.sh | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 runscripts/external_pathway/bpsA.sh diff --git a/runscripts/external_pathway/bpsA.sh b/runscripts/external_pathway/bpsA.sh new file mode 100644 index 000000000..470b2d32b --- /dev/null +++ b/runscripts/external_pathway/bpsA.sh @@ -0,0 +1,28 @@ +## To Run +# chmod u+x FireWorksBox_1.sh +# ./FireWorksBox_1.sh + + +## Create and Add FireWorks to the Launchpad +cd $HOME/wcEcoli/wholecell/fireworks + +# Reset the database +yes | lpad -l my_launchpad.yaml reset + +export DESC="bpsA_KI_20gen" \ +PLOTS="NEW_GENE" \ +VARIANT="new_gene_internal_shift" \ +FIRST_VARIANT_INDEX=1 \ +LAST_VARIANT_INDEX=1 \ +NEW_GENES="bpsA" \ +CACHED_SIM_DATA=0 \ +PARALLEL_PARCA=1 \ +SINGLE_DAUGHTERS=1 \ +N_GENS=20 \ +N_INIT_SIMS=1 \ +LAUNCHPAD_FILE='/user/home/co18263/wcEcoli/wholecell/fireworks/my_launchpad.yaml' \ + +python $HOME/wcEcoli/runscripts/fireworks/fw_queue.py + +## Launch Rockets to collect the FireWorks (created by fw_queue.py) from the Launchpad (MongoDB hosted on MLab via Heroku) and run them on the Queue +nohup qlaunch -r -l my_launchpad.yaml -w my_fworker.yaml -q my_qadapter.yaml rapidfire --nlaunches infinite --sleep 30 --maxjobs_queue 100 From a04d26cae65a73ca92e73c7a88d4e33de7c86a55 Mon Sep 17 00:00:00 2001 From: Kieren Sharma Date: Sun, 12 Jan 2025 14:03:28 +0000 Subject: [PATCH 31/34] Adding --- wholecell/fireworks/my_launchpad.yaml | 17 +++++++++++++++++ wholecell/fireworks/my_qadapter.yaml | 18 ++++++++++++++++++ 2 files changed, 35 insertions(+) create mode 100644 wholecell/fireworks/my_launchpad.yaml create mode 100644 wholecell/fireworks/my_qadapter.yaml diff --git a/wholecell/fireworks/my_launchpad.yaml b/wholecell/fireworks/my_launchpad.yaml new file mode 100644 index 000000000..e8a4a86a8 --- /dev/null +++ b/wholecell/fireworks/my_launchpad.yaml @@ -0,0 +1,17 @@ +authsource: admin +host: mongodb+srv://kierensharma:Kieren1568@fireworks.c6rbgfm.mongodb.net/myFirstDatabase?retryWrites=true&w=majority +logdir: null +mongoclient_kwargs: {} +name: null +password: null +port: null +ssl: false +ssl_ca_certs: /user/home/co18263/.pyenv/versions/wcEcoli3/lib/python3.11/site-packages/certifi/cacert.pem +ssl_certfile: null +ssl_keyfile: null +ssl_pem_passphrase: null +strm_lvl: INFO +uri_mode: true +user_indices: [] +username: null +wf_user_indices: [] \ No newline at end of file diff --git a/wholecell/fireworks/my_qadapter.yaml b/wholecell/fireworks/my_qadapter.yaml new file mode 100644 index 000000000..3544417a8 --- /dev/null +++ b/wholecell/fireworks/my_qadapter.yaml @@ -0,0 +1,18 @@ +logdir: /user/home/co18263/fw/logs/qadapter +_fw_name: CommonAdapter +_fw_q_type: SLURM +rocket_launch: rlaunch -w /user/home/co18263/wcEcoli/wholecell/fireworks/my_fworker.yaml -l /user/home/co18263/wcEcoli/wholecell/fireworks/my_launchpad.yaml singleshot +# queue: serial +account: 'EMAT022602' +job_name: 'wcEcoli_Kieren' +walltime: '06:00:00' +mail_user: 'co18263@bristol.ac.uk' +mail_type: FAIL +# nodes: 1 +ntasks: 1 +# ntasks_per_node: 1 +pre_rocket: null +post_rocket: null +cpus_per_node: 1 +# cpus_per_task: 1 +mem: 8G From 82cf049d7668db93f5a28c9fa2ed7c0c5b22b644 Mon Sep 17 00:00:00 2001 From: Kieren <61089220+kierensharma@users.noreply.github.com> Date: Sun, 12 Jan 2025 16:30:18 +0000 Subject: [PATCH 32/34] Delete wholecell/fireworks/my_launchpad.yaml Reverting accidental push to upstream. --- wholecell/fireworks/my_launchpad.yaml | 17 ----------------- 1 file changed, 17 deletions(-) delete mode 100644 wholecell/fireworks/my_launchpad.yaml diff --git a/wholecell/fireworks/my_launchpad.yaml b/wholecell/fireworks/my_launchpad.yaml deleted file mode 100644 index e8a4a86a8..000000000 --- a/wholecell/fireworks/my_launchpad.yaml +++ /dev/null @@ -1,17 +0,0 @@ -authsource: admin -host: mongodb+srv://kierensharma:Kieren1568@fireworks.c6rbgfm.mongodb.net/myFirstDatabase?retryWrites=true&w=majority -logdir: null -mongoclient_kwargs: {} -name: null -password: null -port: null -ssl: false -ssl_ca_certs: /user/home/co18263/.pyenv/versions/wcEcoli3/lib/python3.11/site-packages/certifi/cacert.pem -ssl_certfile: null -ssl_keyfile: null -ssl_pem_passphrase: null -strm_lvl: INFO -uri_mode: true -user_indices: [] -username: null -wf_user_indices: [] \ No newline at end of file From 9ee7d149086cf5d7a5b0cbb362a3852b7acbb3c5 Mon Sep 17 00:00:00 2001 From: Kieren <61089220+kierensharma@users.noreply.github.com> Date: Sun, 12 Jan 2025 16:30:37 +0000 Subject: [PATCH 33/34] Delete wholecell/fireworks/my_qadapter.yaml Revert accidental push to upstream. --- wholecell/fireworks/my_qadapter.yaml | 18 ------------------ 1 file changed, 18 deletions(-) delete mode 100644 wholecell/fireworks/my_qadapter.yaml diff --git a/wholecell/fireworks/my_qadapter.yaml b/wholecell/fireworks/my_qadapter.yaml deleted file mode 100644 index 3544417a8..000000000 --- a/wholecell/fireworks/my_qadapter.yaml +++ /dev/null @@ -1,18 +0,0 @@ -logdir: /user/home/co18263/fw/logs/qadapter -_fw_name: CommonAdapter -_fw_q_type: SLURM -rocket_launch: rlaunch -w /user/home/co18263/wcEcoli/wholecell/fireworks/my_fworker.yaml -l /user/home/co18263/wcEcoli/wholecell/fireworks/my_launchpad.yaml singleshot -# queue: serial -account: 'EMAT022602' -job_name: 'wcEcoli_Kieren' -walltime: '06:00:00' -mail_user: 'co18263@bristol.ac.uk' -mail_type: FAIL -# nodes: 1 -ntasks: 1 -# ntasks_per_node: 1 -pre_rocket: null -post_rocket: null -cpus_per_node: 1 -# cpus_per_task: 1 -mem: 8G From 044aeb0a97ec5594d3f90d2f5b557d395b56f0ac Mon Sep 17 00:00:00 2001 From: Kieren <61089220+kierensharma@users.noreply.github.com> Date: Sun, 12 Jan 2025 16:36:18 +0000 Subject: [PATCH 34/34] Delete reconstruction/ecoli/flat/new_gene_data/bpsA directory Reverting accidental push to upstream. --- reconstruction/ecoli/flat/new_gene_data/bpsA/gene_sequences.tsv | 2 -- reconstruction/ecoli/flat/new_gene_data/bpsA/genes.tsv | 2 -- .../ecoli/flat/new_gene_data/bpsA/insertion_location.tsv | 2 -- .../flat/new_gene_data/bpsA/metabolic_reactions_external.tsv | 2 -- reconstruction/ecoli/flat/new_gene_data/bpsA/metabolites.tsv | 2 -- .../flat/new_gene_data/bpsA/protein_half_lives_measured.tsv | 1 - reconstruction/ecoli/flat/new_gene_data/bpsA/proteins.tsv | 2 -- reconstruction/ecoli/flat/new_gene_data/bpsA/rna_half_lives.tsv | 1 - reconstruction/ecoli/flat/new_gene_data/bpsA/rnas.tsv | 2 -- 9 files changed, 16 deletions(-) delete mode 100644 reconstruction/ecoli/flat/new_gene_data/bpsA/gene_sequences.tsv delete mode 100644 reconstruction/ecoli/flat/new_gene_data/bpsA/genes.tsv delete mode 100644 reconstruction/ecoli/flat/new_gene_data/bpsA/insertion_location.tsv delete mode 100644 reconstruction/ecoli/flat/new_gene_data/bpsA/metabolic_reactions_external.tsv delete mode 100644 reconstruction/ecoli/flat/new_gene_data/bpsA/metabolites.tsv delete mode 100644 reconstruction/ecoli/flat/new_gene_data/bpsA/protein_half_lives_measured.tsv delete mode 100644 reconstruction/ecoli/flat/new_gene_data/bpsA/proteins.tsv delete mode 100644 reconstruction/ecoli/flat/new_gene_data/bpsA/rna_half_lives.tsv delete mode 100644 reconstruction/ecoli/flat/new_gene_data/bpsA/rnas.tsv diff --git a/reconstruction/ecoli/flat/new_gene_data/bpsA/gene_sequences.tsv b/reconstruction/ecoli/flat/new_gene_data/bpsA/gene_sequences.tsv deleted file mode 100644 index ce81e5118..000000000 --- a/reconstruction/ecoli/flat/new_gene_data/bpsA/gene_sequences.tsv +++ /dev/null @@ -1,2 +0,0 @@ -"id" "symbol" "synonyms" "gene_seq" -"NG001" "bpsA" ["bpsA"] "GGATCCTGACGATCGACCTGCACGCAGACCAGATCCAGGGATTCTTCGACGGCCCGGTGGACCACCTGTTCGCCATGCCGGTCCTCGCGGACTACATCGGCTCCAAGGTGGACCGCGAGGCGCTGACCGTGGTCTCGCCCGACGCCGGCCGCGTGCGCGTGGCCGACGGCTGGTGCGACCGCCTCGGCGCTCCGCTGGCCATCGTCCACAAGCGGCGCGACAAGGACGTGGCCCACCAGGTGACCGCCCACGAGGTGGTCGGCGAGGTCCGCGACCGGGTCTGCGTCCTGGTCGACGACATGATCGACACGGGCGGCACGATCTGCGCCGCCGCCGACGCCCTCTTCGCGCAGGGGGCGCGGGACGTCATCGTGGCGGCCACGCACGGGGTCCTCTCCGGCCCCGCGGCGGACCGCCTGAAGAACTCGCAGGTGAGCGAGTTCGTGTTCACGGACACCCTGCCGGTGCCCGGGGCCCTCGGACTGGACAAGGTCACCGTCCTGTCCATCGCCCCGCTGATCGCCGGCGCCTCGCGCGCGGTGTTCGAGAACGGATCTGTCACCCGGCTCCTGCAGAGCCGGTGATCGCCCGGGCGGACGGGCCCGACGGGGCCCGTCCGTCCGAAGGGGGAGGCGGCCGCACGCATCGAGCCGCTCCACAACGGATCGTCATAAGGAAGCGGGAAATGACTCTTCAGGAGACCAGCGTGCTCGAGCCCACCCTGCAGGGGACCACCACGTTGCCCGGCCTGCTCGCCCAGCGGGTGGCCGAACACCCCGAGGCGATCGCGGTCGCCTACCGGGACGACAAGCTCACCTTCCGCGAGCTCGCGTCCAGAAGCGCGGCCCTCGCCGACTACCTGGAGCACCTCGGTGTCTCCGCCGACGACTGCGTCGGCCTGTTCGTCGAGCCGTCGATCGACCTGATGGTCGGCGCCTGGGGCATCCTCAACGCCGGCGCCGCGTACCTGCCGCTGTCCCCGGAGTACCCCGAGGACCGGCTGCGCTACATGATCGAGAACAGCGAGACGAAGATCATCCTGGCGCAGCAGCGCCTGGTGTCCCGTCTGCGCGAGCTCGCGCCGAAGGACGTCACCATCGTGACCCTGCGCGAGTCCGAGGCCTTCGTCCGCCCCGAGGGCACCGAGGCCCCGGCCGCCCGCAGCGCCCGCCCGGACACCCTCGCGTACGTCATCTACACCTCCGGCAGCACGGGCAAGCCGAAGGGTGTGATGATCGAGCACCGCAGCATCGTCAACCAGCTCGGCTGGCTGCGCGAGACCTACGCGATCGACCGCAGCAAGGTCATCCTCCAGAAGACCCCGATGAGCTTCGACGCCGCCCAGTGGGAGATCCTCTCCCCGGCCAACGGCGCCACCGTCGTCATGGGCGCCCCGGGCGTCTACGCCGACCCCGAGGGCCTCATCGAGACCATCGTCAAGCACAACGTGACCACCCTCCAGTGCGTCCCGACGCTGCTCCAGGGTCTGATCGACACCGAGAAGTTCCCCGAGTGCGTCTCCCTCCAGCAGATCTTCAGCGGTGGCGAGGCCCTCTCCCGCCTGCTGGCGATCCAGACCACGCAGGAGATGCCCGGCCGGGCGCTCATCAACGTCTACGGGCCGACCGAGACGACGATCAACTCGTCCTCGTTCCCCGTCGACCCCGCCGACCTGGACGAGGGACCGCAGTCCATCTCCATCGGCTCCCCGGTGCACGGCACCACGTACCACATCCTTGACAAGGAGACCCTCAAGCCGGTCGGCGTCGGTGAGATCGGCGAGCTGTACATCGGCGGCATCCAGCTGGCCCGCGGCTACCTGCACCGCGACGACCTGACCGCCGAGCGCTTCCTGGAGATCGAGCTCGAGGAGGGCGCCGAGCCCGTCCGCCTGTACAAGACGGGCGACCTCGGCCAGTGGAACAACGACGGCACCGTGCAGTTCGCCGGCCGCGCCGACAACCAGGTCAAGCTGCGCGGCTACCGCGTCGAGCTCGACGAGATATCCCTGGCGATCGAGAACCACGACTGGGTCCGCAACGCCGCCGTCATCGTCAAGAACGACGGCCGCACCGGCTTCCAGAACCTGATCGCCTGCATCGAGCTGAGCGAGAAGGAAGCCGCCCTGATGGACCAGGGCAACCACGGCTCCCACCACGCGTCGAAGAAGAGCAAGCTCCAGGTCAAGGCGCAGCTGTCCAACCCGGGCCTGCGCGACGACGCCGAGCTGGCCGCCCGCCCGGCCTTCGACCTGGAGGGCGCCGAGCCCACCCCCGAGCAGCGCGCCCGGGTCTTCGCCCGCAAGACGTACCGCTTCTACGAGGGCGGCGCCGTCACCCAGGCCGACCTGCTGGGCCTGCTGGGCGCCACGGTCACCGCCGGCTACTCGCGCAAGGCGGCCGACCTGGCCCCCGCCGAACTCGGCCAGATCCTGCGCTGGTTCGGCCAGTACATCAGCGAGGAGCGGCTCCTGCCGAAGTACGGCTACGCCTCCCCGGGCGCGCTGTACGCGACGCAGATGTACTTCGAGCTGGAGGGCGTCGGCGGTCTGAAGCCGGGCTACTACTACTACCAGCCGGTCCGCCACCAGCTCGTCCTCATCAGCGAGCGCGAGGCCACCGGCAAGGCCACGGCGCAGATCCACTTCATCGGCAAGAAGAGCGGCATCGAGCCGGTCTACAAGAACAACATCCTCGAGGTCCTGGAGATCGAGACCGGCCACATGGTCGGCCTCTTCGAGCAGATCCTGCCGGCCTACGGCCTCGACATCCACGACCGCGCCTACGAGCCGGCCGTCAAGGACCTGCTCGACGTCGCCGACGAGGACTACTACCTGGGCACCTTCGAGCTGGTCCCGCACGCGGGCGCGCGCGACGACCAGGCCGAGGTCTACGTCCAGACGCACGGCGGAAAGGTCGCCGGCCTGCCCGAGGGCCAGTACCGCTACGAGAACGGCGAGCTGACCCGCTTCTCGGACGACATCGTCCTCAAGAAGCACGTCATCGCGATCAACCAGTCGGTGTACCAGGCCGCCAGCTTCGGCATCAGCGTCTACAGCCGCGCCGAGGAGGAGTGGCTGAAGTACATCACCCTCGGCAAGAAGCTCCAGCACCTGATGATGAACGGGCTGAACCTGGGCTTCATGTCCTCGGGCTACAGCTCCAAGACGGGCAACCCGCTGCCGGCCTCGCGCCGCATGGACGCCGTCCTCGGCGCCAACGGCGTCGACAGCGCCCCGATGTACTTCTTCGTCGGCGGCCGCATCAGCGACGAGCAGATCGGCCACGAGGGCATGCGCGAGGACAGCGTCCACATGCGCGGTCCGGCCGAGCTCATCCGCGACGACCTCGTCAGCTTCCTCCCGGACTACATGATCCCCAACCGGGTCGTGGTCTTCGACCGGCTGCCGCTGTCCGCCAACGGCAAGATCGACGTCAAGGCGCTCGCCGCCTCCGACCAGGTCAACGCCGAGCTCGTCGAGCGCCCCTTCGTCGCCCCGCGCACGGAGACGGAGAAGGAGATCGCGGCGGTCTGGGAGAAGGCCCTGCGCCGCGAGAACGCCTCCGTCCAGGACGACTTCTTCGAGTCGGGCGGCAACTCGCTGATCGCCGTCGGCCTCGTCCGCGAGCTCAACGCGCGCCTGGGCGTCTCCCTGCCGCTGCAGAGCGTCCTGGAGTCCCCGACCATCGAGAAGCTGGCCCGCCGCCTGGAGCGCGAGGTCGCCCAGGAGTCCTCGCGCTTCGTCCGCCTGCACGCGGAGACCGGCAAGGCCCGGCCCGTGATCTGCTGGCCGGGTCTGGGCGGCTACCCGATGAACCTGCGCAGCCTGGCCGGCGAGATCGGCCTCGGCCGCTCGTTCTACGGCGTCCAGTCCTACGGCATCAACGAGGGCGAGACCCCGTACGAGACCATCACCGAGATGGCCAAGAAGGACATCGAGGCCCTCAAGGAGATCCAGCCGGCCGGCCCCTACACCCTGTGGGGCTACTCCTTCGGCGCCCGCGTGGCCTTCGAGACCGCCTACCAGCTGGAGCAGGCGGGCGAGAAGGTGGACAACCTCTTCCTGATCGCCCCGGGCTCCCCGAAGGTGCGCGCCGAGAACGGCAAGGTGTGGGGCCGCGAGGCGTCCTTCGCCAACCGCGGCTACACCACGATCCTGTTCTCGGTCTTCACCGGCACCATTTCCGGTCCGGACCTGGACCGGTGCCTGGAGACCGTGACGGACGAGGCCTCCTTCGCCGAGTTCATCAGCGAGCTCAAGGGAATCGACGTCGACCTCGCCCGCCGGATCATCTCGGTCGTGGGCCAGACGTACGAATTCGAGTACTCCTTCCACGAGCTGGCCGAGCGCACCCTCCAGGCGCCGATCAGCATCTTCAAGGCCGTGGGCGACGACTACTCGTTCCTGGAGAACAGCAGCGGCTACTCGGCCGAGCCGCCGACGGTCATCGACCTCGACGCCGACCACTACAGCCTGCTGCGCGAGGACATCGGCGAGCTGGTGAAGCACATCCGCTACCTGCTCGGCGAGTGACCGGGTAAGGAAAAGCGGGGCTGAATGAAGACGGCCGCCCCGCCGGAGAAATCCGGCGGGGCGGCCGTCTTTTCGCGTTTCACTCGGGGGAAATACCGGCCATCAGGTGGCTCGGTATGGCTCAATTCTGACGCAGATTGACCGCGTTCTGACATACCTCCTGTTGACGTCCACATTCCCCACACAAGACACTTCTATTGATTCCAGCCGTCCCGTTTTTTGTTGTTCTCGCTGATGAGGAGTCATCTTCCATGCGCTTCAATCTCATCGGCCCCTTCGAGATCGTCACCGACGACGGCAGGACCTACCAGCCCGGTACCCCCAAGGTCTGCCAGACGCTCGCCCTGCTGCTCACCCGGCCCGGCGAGATCGTCACGGCCGAGGCCCTCATCCGGGAGCTGTGGGGCGAGAAGCCCCCGCGCAGCGCCGTCACCACGCTCCAGACGTACGTCTACCACGCGCGCCGGATGTTCGCCCAGGAGGAGCTGGCGCCCCCGGGGCGCTGCCTGATCGTCACCGGCCCGTCGGGCTACGTGATGCGCGTCGAGGACTCCGAGGTCGACGTGCGGATCTTCGAGCGGCTCGTCACCCGGGCCCGGTACGAGCTGGCCGAGGAGGAGCCGCAGCGGGCGCTGCGCACGGTCGGCCAGGCGCTCGACCTGTGGCGGGGGCCCGCCCTGTCGAACTTCCCGGCCGGCGACGTGCTGGCCGGGCACGTGGTGCACCTGGAGGAGCTGCGGATCAGGGCCTTCGAGACCCGCATCGAGGCGCAGGAGGCGCTGGGGCGCCACCGCGAGTCCATCCCGGAGCTGCGCAAGCTGATCAACGACTACCCGCTCAACGAGTGGTTCCACAGCCGGCTCATCGGCGCGCTCGGTGCCGCCGGGCGGCGGGCGGAGGCCCTCCAGGCCTACCAGAAGGTGCGCCGGCTGCTCGCGGAGGAACTGGGCCTGGAGCCCTCCGCGGAGCTCAAGCGGCTCCACGGGCGGCTGCTGAGCCCGGCGCGCGGCGAGCGGTTCGTGGTGGGCGCGGCCGTCTGAGCCGCCCCCGTGGGGCGGGCGCCCGCCACGCATTCGAGCAGGGCTCCAGGGAGGTCGGAGACGGTCGCCCTTCCGGCCGTGCACGGGTCGTGCACGGGGCCGCACAAGAAGGAGACCGCATGTCCCGTCGTCTGTTCACCTCGGAGTCCGTGACCGAGGGTCACCCCGACAAGATCGCCGACCAGATCAGCGACACGATCCTGGACGCGCTGCTGCGCCAGGACCCGACCTCGCGCGTGGCCGTGGAGACCCTGATCACCACCGGTCTGGTGCACGTCGCGGGCGAGGTGACGACGAAGGCGTACGCCCCGATCGCCCAGCTCGTCCGCGAGCGGATCC" \ No newline at end of file diff --git a/reconstruction/ecoli/flat/new_gene_data/bpsA/genes.tsv b/reconstruction/ecoli/flat/new_gene_data/bpsA/genes.tsv deleted file mode 100644 index 31e5d9772..000000000 --- a/reconstruction/ecoli/flat/new_gene_data/bpsA/genes.tsv +++ /dev/null @@ -1,2 +0,0 @@ -"id" "symbol" "synonyms" "left_end_pos" "right_end_pos" "direction" "rna_ids" -"NG001" "bpsA" ["bpsA"] 0 5912 "+" ["NG001_RNA"] \ No newline at end of file diff --git a/reconstruction/ecoli/flat/new_gene_data/bpsA/insertion_location.tsv b/reconstruction/ecoli/flat/new_gene_data/bpsA/insertion_location.tsv deleted file mode 100644 index 0536c04e0..000000000 --- a/reconstruction/ecoli/flat/new_gene_data/bpsA/insertion_location.tsv +++ /dev/null @@ -1,2 +0,0 @@ -"subdirectory" "insertion_pos" "direction" -"bpsA" 400000 "+" \ No newline at end of file diff --git a/reconstruction/ecoli/flat/new_gene_data/bpsA/metabolic_reactions_external.tsv b/reconstruction/ecoli/flat/new_gene_data/bpsA/metabolic_reactions_external.tsv deleted file mode 100644 index ff3b5ffd0..000000000 --- a/reconstruction/ecoli/flat/new_gene_data/bpsA/metabolic_reactions_external.tsv +++ /dev/null @@ -1,2 +0,0 @@ -"id" "stoichiometry" "direction" "catalyzed_by" "substrate" "kcat" "km" -"RXN-24414" {"GLN[c]": -2, "ATP[c]": -2, "FMN[c]": -2, "OXYGEN-MOLECULE[c]": -1, "IND[c]": 1, "AMP[c]": 2, "FMNH2[c]": 2, "PPI[c]": 2, "WATER[c]": 2} "L2R" ["NG-MONOMER-124584[c]"] ["GLN[c]"] 5.4 0.0157 \ No newline at end of file diff --git a/reconstruction/ecoli/flat/new_gene_data/bpsA/metabolites.tsv b/reconstruction/ecoli/flat/new_gene_data/bpsA/metabolites.tsv deleted file mode 100644 index 6ab1d055a..000000000 --- a/reconstruction/ecoli/flat/new_gene_data/bpsA/metabolites.tsv +++ /dev/null @@ -1,2 +0,0 @@ -"id" "common_name" "synonyms" "chemical_formula" "mw" "molecular_charge" "_smiles" -"IND" "INDIGOIDINE" [] "C10H8N4O4" 248.199 0 \ No newline at end of file diff --git a/reconstruction/ecoli/flat/new_gene_data/bpsA/protein_half_lives_measured.tsv b/reconstruction/ecoli/flat/new_gene_data/bpsA/protein_half_lives_measured.tsv deleted file mode 100644 index 19efd4227..000000000 --- a/reconstruction/ecoli/flat/new_gene_data/bpsA/protein_half_lives_measured.tsv +++ /dev/null @@ -1 +0,0 @@ -"id" "half life (units.min)" "_comments" diff --git a/reconstruction/ecoli/flat/new_gene_data/bpsA/proteins.tsv b/reconstruction/ecoli/flat/new_gene_data/bpsA/proteins.tsv deleted file mode 100644 index 8a3306ba4..000000000 --- a/reconstruction/ecoli/flat/new_gene_data/bpsA/proteins.tsv +++ /dev/null @@ -1,2 +0,0 @@ -"id" "common_name" "synonyms" "seq" "experimental_compartment" "computational_compartment" "cleavage_of_initial_methionine" "selenocysteine_at_opal" "protein_feature_cofactors" "in_complex" -"NG-MONOMER-124584" "BpsA" ["BpsA"] "MTLQETSVLEPTLQGTTTLPGLLAQRVAEHPEAIAVAYRDDKLTFRELASRSAALADYLEHLGVSADDCVGLFVEPSIDLMVGAWGILNAGAAYLPLSPEYPEDRLRYMIENSETKIILAQQRLVSRLRELAPKDVTIVTLRESEAFVRPEGTEAPAARSARPDTLAYVIYTSGSTGKPKGVMIEHRSIVNQLGWLRETYAIDRSKVILQKTPMSFDAAQWEILSPANGATVVMGAPGVYADPEGLIETIVKHNVTTLQCVPTLLQGLIDTEKFPECVSLQQIFSGGEALSRLLAIQTTQEMPGRALINVYGPTETTINSSSFPVDPADLDEGPQSISIGSPVHGTTYHILDKETLKPVGVGEIGELYIGGIQLARGYLHRDDLTAERFLEIELEEGAEPVRLYKTGDLGQWNNDGTVQFAGRADNQVKLRGYRVELDEISLAIENHDWVRNAAVIVKNDGRTGFQNLIACIELSEKEAALMDQGNHGSHHASKKSKLQVKAQLSNPGLRDDAELAARPAFDLEGAEPTPEQRARVFARKTYRFYEGGAVTQADLLGLLGATVTAGYSRKAADLAPAELGQILRWFGQYISEERLLPKYGYASPGALYATQMYFELEGVGGLKPGYYYYQPVRHQLVLISEREATGKATAQIHFIGKKSGIEPVYKNNILEVLEIETGHMVGLFEQILPAYGLDIHDRAYEPAVKDLLDVADEDYYLGTFELVPHAGARDDQAEVYVQTHGGKVAGLPEGQYRYENGELTRFSDDIVLKKHVIAINQSVYQAASFGISVYSRAEEEWLKYITLGKKLQHLMMNGLNLGFMSSGYSSKTGNPLPASRRMDAVLGANGVDSAPMYFFVGGRISDEQIGHEGMREDSVHMRGPAELIRDDLVSFLPDYMIPNRVVVFDRLPLSANGKIDVKALAASDQVNAELVERPFVAPRTETEKEIAAVWEKALRRENASVQDDFFESGGNSLIAVGLVRELNARLGVSLPLQSVLESPTIEKLARRLEREVAQESSRFVRLHAETGKARPVICWPGLGGYPMNLRSLAGEIGLGRSFYGVQSYGINEGETPYETITEMAKKDIEALKEIQPAGPYTLWGYSFGARVAFETAYQLEQAGEKVDNLFLIAPGSPKVRAENGKVWGREASFANRGYTTILFSVFTGTISGPDLDRCLETVTDEASFAEFISELKGIDVDLARRIISVVGQTYEFEYSFHELAERTLQAPISIFKAVGDDYSFLENSSGYSAEPPTVIDLDADHYSLLREDIGELVKHIRYLLGE" ["CCO-CYTOSOL"] ["CCO-CYTOSOL"] 0 [] {} 0 \ No newline at end of file diff --git a/reconstruction/ecoli/flat/new_gene_data/bpsA/rna_half_lives.tsv b/reconstruction/ecoli/flat/new_gene_data/bpsA/rna_half_lives.tsv deleted file mode 100644 index b63b12ddd..000000000 --- a/reconstruction/ecoli/flat/new_gene_data/bpsA/rna_half_lives.tsv +++ /dev/null @@ -1 +0,0 @@ -"id" "half_life (units.min)" diff --git a/reconstruction/ecoli/flat/new_gene_data/bpsA/rnas.tsv b/reconstruction/ecoli/flat/new_gene_data/bpsA/rnas.tsv deleted file mode 100644 index 71fdbe6d2..000000000 --- a/reconstruction/ecoli/flat/new_gene_data/bpsA/rnas.tsv +++ /dev/null @@ -1,2 +0,0 @@ -"id" "common_name" "synonyms" "type" "modified_forms" "gene_id" "monomer_ids" "anticodon" "coding_segments" -"NG001_RNA" "bpsA" ["bpsA"] "mRNA" [] "NG001" ["NG-BpsA-MONOMER"] null [] \ No newline at end of file