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Update GitHub Actions (#37)
* add header=False * Update createid2id.yml
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.github/workflows/createid2id.yml

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@@ -38,6 +38,11 @@ jobs:
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run: |
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cat CHEBI/CHEBI.tsv bigg.metabolite/bigg.metabolite.tsv bigg.reaction/bigg.reaction.tsv biocyc/biocyc.tsv brenda/brenda.tsv metanetx.reaction/metanetx.reaction.tsv rhea/rhea.tsv uniprot/uniprot.tsv > id2id.tsv
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ls -lh id2id.tsv
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- name: Update release
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uses: johnwbyrd/update-release@v1
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with:
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token: ${{ secrets.GITHUB_TOKEN }}
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files: ./id2id.tsv
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- uses: actions/upload-artifact@v3
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with:
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name: my-artifact

bigg.metabolite/bigg.metabolite.py

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df3 = df2['database_links'].str.split('/', expand=True)
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result = pd.DataFrame({'id1': df2['universal_bigg_id'], 'identifiersorgprefix2': df3[3], 'id2': df3[4]})
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result['identifiersorgprefix1'] = 'bigg.metabolite'
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result[['identifiersorgprefix1', 'id1', 'identifiersorgprefix2', 'id2']].to_csv('bigg.metabolite.tsv', index=False, sep="\t")
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result[['identifiersorgprefix1', 'id1', 'identifiersorgprefix2', 'id2']].to_csv('bigg.metabolite.tsv', header=False, index=False, sep="\t")

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