main.tex

\documentclass[11pt]{book}
%\usepackage{natbib}
\usepackage[
backend=bibtex,
style=numeric,
doi=false,
isbn=true,
url=false,
eprint=false,
abbreviate=false,
sorting=none
]{biblatex}
\addbibresource{bibliography}


\input{setup.tex}



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%                          Begin Document					  %

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\begin{document}
\fancypagestyle{empty}{
	\fancyhf{}
	\renewcommand{\headrulewidth}{0 pt}
	\renewcommand{\footrulewidth}{0 pt}
}
% \setkeys{Gin}{draft}
\input{title_page.tex}

\pagestyle{fancy}

\renewcommand{\sectionmark}[1]{\markright{\thesection~- ~#1}}
\renewcommand{\chaptermark}[1]{\markboth{\chaptername~\thechapter~-~ #1}{}}

\fancypagestyle{main}{
\fancyhf{} % clear all header fields
\fancyhead[LE]{\scshape\leftmark}
\fancyhead[RO]{\scshape\rightmark}
% \fancyfoot[LE,RO]{\thepage}
\fancyfoot[RO]{\vspace{8mm}\vfootline\hskip\linepagesep\hspace{1mm}\thepage}
\fancyfoot[LE]{\vspace{8mm}\thepage\hskip\linepagesep\hspace{1mm}\vfootline}
\newskip\linepagesep \linepagesep 5pt\relax
  \def\vfootline{%
    \begingroup\color{THEMECOLOR}\rule[-990pt]{2pt}{1000pt}\endgroup}
\renewcommand{\headrulewidth}{0 pt}
\renewcommand{\footrulewidth}{0 pt}
}

\fancypagestyle{plain}{%
  \fancyhf{}%
  \fancyfoot[RO]{\vspace{8mm}\vfootline\hspace{1mm}\hskip\linepagesep\thepage}
	\fancyfoot[LE]{\vspace{8mm}\thepage\hspace{1mm}\hskip\linepagesep\vfootline}
	\newskip\linepagesep \linepagesep 5pt\relax
	\def\vfootline{%
		\begingroup\color{THEMECOLOR}\rule[-990pt]{2pt}{1000pt}\endgroup}
	\renewcommand{\headrulewidth}{0 pt}
	\renewcommand{\footrulewidth}{0 pt}
}

\fancypagestyle{partplain}{%
  \fancyhf{}%
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	\fancyfoot[LE]{\vspace{8mm}\color{white}\thepage\hskip\linepagesep\vfootline}
	\newskip\linepagesep \linepagesep 5pt\relax
	\def\vfootline{%
		\begingroup\color{white}\rule[-990pt]{2pt}{1000pt}\endgroup}
	\renewcommand{\headrulewidth}{0 pt}
	\renewcommand{\footrulewidth}{0 pt}
}

\pagestyle{plain}
\frontmatter
{
	\setlength{\parskip}{.7em}
	
	\titlespacing*{\section}{0pt}{.9em}{.8em}
	%\titlespacing*{\subsection}
	%{0pt}{5.5ex plus 1ex minus .2ex}{4.3ex plus .2ex}
	\renewcommand{\baselinestretch}{1.1}
	\sloppy
	


	\phantomsection
	\input{chapters/abstract.tex}
	

	% \phantomsection
	% \include{chapters/acknowledgement}

	\cleardoublepage
	
}

{
	\hypersetup{linkcolor=black}
	
	{
		\phantomsection
		\addcontentsline{toc}{chapter}{Table of Contents}
        \tableofcontents
        % \FullToC
    }
	
	{
		\cleardoublepage
		\phantomsection
		\addcontentsline{toc}{chapter}{List of Figures}
		\listoffigures
	}
	
	
	{
		\cleardoublepage
		\phantomsection
		\addcontentsline{toc}{chapter}{List of Tables}
		\listoftables
		
	}


}

\cleardoublepage
\phantomsection
\input{glossary.tex}


\setlength{\parskip}{.7em}

\titlespacing*{\section}{0pt}{.9em}{.8em}
\renewcommand{\baselinestretch}{1.1}
\sloppy




\mainmatter

\pagestyle{main}


\markboth{\textsc{Introduction}}{\textsc{Introduction}}
\input{chapters/introduction.tex}


% \stopcontents[chapters]
\part{Part title}%
\input{chapters/chap1.tex}


\bookmarksetup{startatroot}
\input{chapters/conclusion.tex}

% \stopcontents[chapters]
\cleardoublepage
\phantomsection
\addcontentsline{toc}{chapter}{Bibliography}
\printbibliography

\cleardoublepage
\appendix

\renewcommand{\chaptermark}[1]{\markboth{Appendix~\thechapter~-~ #1}{}}

\newpage\null\thispagestyle{empty}\newpage
\end{document}