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Provide customers with a valid JSON-file for FASTQ and RML orders #4272
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Depends on #4286. |
With the linked PR, the following two sample files can be uploaded: Fastq: {
"comment": "",
"customer": "custXXX",
"name": "order-name",
"samples": [
{
"application": "WGSWPFR400",
"comment": "Free text where you can give additional info",
"container": "Tube",
"container_name": "name-for-your-container",
"data_analysis":"fastq",
"data_delivery":"fastq",
"elution_buffer":"Tris-HCl",
"name": "sample-1",
"priority": "research",
"quantity": "200",
"require_qc_ok": true,
"sex": "male",
"source": "blood",
"subject_id": "subject-id-1",
"volume": "111",
"well_position": ""
},
{
"application": "WGSWPFR400",
"comment": "Free text where you can give additional info",
"container": "96 well plate",
"container_name": "plate-name",
"data_analysis":"fastq",
"data_delivery":"fastq",
"elution_buffer":"Other",
"name": "sample-2",
"priority": "standard",
"quantity": "200",
"require_qc_ok": false,
"sex": "female",
"source": "blood",
"subject_id": "subject-id-2",
"volume": "111",
"well_position": "A:1"
}
]
} RML: {
"name": "order-name",
"customer": "custXXX",
"comment": "comment",
"samples": [{
"name": "rml-sample-1",
"application": "RMLP05R800",
"control": "",
"data_analysis": "rml",
"data_delivery": "fastq",
"comment": "A:1",
"volume": "111",
"concentration": "10",
"concentration_sample": "293.04000",
"pool": "1234567",
"rml_plate_name": "",
"well_position_rml": "",
"index": "NEXTflex® Unique Dual Index Barcodes 1 - 96",
"index_number": "7",
"priority": "standard"
},
{
"name": "rml-sample-2",
"application": "RMLP05R800",
"control": "negative",
"data_analysis": "rml",
"data_delivery": "fastq",
"comment": "C:1",
"volume": "111",
"concentration": "10",
"concentration_sample": "238.38000",
"pool": "1234567",
"rml_plate_name": "",
"well_position_rml": "",
"index": "NEXTflex® Unique Dual Index Barcodes 1 - 96",
"index_number": "31",
"priority": "standard"
}
]} |
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Description
In this ticket the customers would like guidance in how to automate their ordering for RML and FASTQ orders.
Lacking a proper auth-solution I say we exclude submission directly to the submit-order endpoint. Instead we should aim for providing clear and valid JSON example for them to replicate and be able to upload in the orderportal. Essentially describing which fields in
cg.models.orders.json_sample.JsonSample
need to be specified for the aforementioned order types.Acceptance criteria
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