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@MPUSP

Max Planck Unit for the Science of Pathogens

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  1. nf-core-crispriscreen nf-core-crispriscreen Public

    Process next generation sequencing data obtained from CRISPRi repression library screenings

    Nextflow 5 2

  2. snakemake-ms-proteomics snakemake-ms-proteomics Public

    Pipeline for automatic processing and quality control of mass spectrometry data

    Python 5

  3. snakemake-crispr-guides snakemake-crispr-guides Public

    A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.

    R 5 2

  4. snakemake-ont-bacterial-variants snakemake-ont-bacterial-variants Public

    A Snakemake workflow for the identification of variants in bacterial genomes using nanopore long-read sequencing.

    Python 5 2

  5. RNA_editing_analysis_pipeline RNA_editing_analysis_pipeline Public

    RNA editing pipeline / code for publication Wulff et al.

    Python 3

  6. snakemake-bacterial-riboseq snakemake-bacterial-riboseq Public

    Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.

    Python 2

Repositories

Showing 10 of 11 repositories
  • ignatov_et_al_2025 Public

    R scripts and source data to reproduce the primary results presented in the manuscript: Ignatov et al. (2024).

    MPUSP/ignatov_et_al_2025’s past year of commit activity
    R 1 MIT 0 0 0 Updated Mar 20, 2025
  • snakemake-workflow-template Public template Forked from snakemake-workflows/snakemake-workflow-template

    A template for standard compliant snakemake-workflows

    MPUSP/snakemake-workflow-template’s past year of commit activity
    Python 0 MIT 35 0 0 Updated Mar 10, 2025
  • bioinfo-code-chunks Public

    Random selection of useful code chunks and examples for bioinformatics

    MPUSP/bioinfo-code-chunks’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Feb 20, 2025
  • snakemake-bacterial-riboseq Public

    Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.

    MPUSP/snakemake-bacterial-riboseq’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Feb 2, 2025
  • snakemake-ms-proteomics Public

    Pipeline for automatic processing and quality control of mass spectrometry data

    MPUSP/snakemake-ms-proteomics’s past year of commit activity
    Python 5 MIT 0 0 0 Updated Jan 30, 2025
  • snakemake-ont-bacterial-variants Public

    A Snakemake workflow for the identification of variants in bacterial genomes using nanopore long-read sequencing.

    MPUSP/snakemake-ont-bacterial-variants’s past year of commit activity
    Python 5 MIT 2 1 0 Updated Jan 24, 2025
  • snakemake-crispr-guides Public

    A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.

    MPUSP/snakemake-crispr-guides’s past year of commit activity
    R 5 MIT 2 1 0 Updated Dec 16, 2024
  • RNA_editing_analysis_pipeline Public

    RNA editing pipeline / code for publication Wulff et al.

    MPUSP/RNA_editing_analysis_pipeline’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Nov 7, 2024
  • nf-core-crispriscreen Public

    Process next generation sequencing data obtained from CRISPRi repression library screenings

    MPUSP/nf-core-crispriscreen’s past year of commit activity
    Nextflow 5 MIT 2 4 0 Updated Oct 31, 2024
  • lautenschlaeger_silent_sites Public

    Code for identifying silent sites in NGS RNA data with cross strain comparison

    MPUSP/lautenschlaeger_silent_sites’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jul 2, 2024
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