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@MarioniLab

Marioni Laboratory

A central repository for projects in John Marioni's group

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  1. miloR miloR Public

    R package implementation of Milo for testing for differential abundance in KNN graphs

    R 361 23

  2. EmbryoTimecourse2018 EmbryoTimecourse2018 Public

    Data and analysis scripts for our Embryo Timecourse paper.

    HTML 68 35

  3. miloDE miloDE Public

    Framework for sensitive DE testing (using neighbourhoods)

    R 64 3

  4. DropletUtils DropletUtils Public

    Clone of the Bioconductor repository for the DropletUtils package.

    R 57 28

  5. MNN2017 MNN2017 Public archive

    Code for the MNN manuscript figures

    HTML 51 17

  6. scran scran Public

    Clone of the Bioconductor repository for the scran package.

    R 41 22

Repositories

Showing 10 of 90 repositories
  • COSICC Public

    COSICC R package

    R 0 0 0 0 Updated Mar 11, 2025
  • analysis_chimera_data Public

    Systematic characterisation of perturbations in complex developing cell populations reveals mechanisms underpinning development and disease

    HTML 0 0 0 0 Updated Mar 11, 2025
  • ExtendedMouseAtlas Public
    1 0 0 0 Updated Feb 24, 2025
  • DropletUtils Public

    Clone of the Bioconductor repository for the DropletUtils package.

    R 57 28 14 1 Updated Dec 10, 2024
  • miloR Public

    R package implementation of Milo for testing for differential abundance in KNN graphs

    R 361 GPL-3.0 23 12 0 Updated Nov 20, 2024
  • oor_benchmark Public

    A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data

    Python 13 MIT 2 1 0 Updated Oct 21, 2024
  • cydar Public

    Clone of the Bioconductor repository for the cydar package.

    R 1 2 0 0 Updated Sep 6, 2024
  • scran Public

    Clone of the Bioconductor repository for the scran package.

    R 41 22 18 1 Updated Sep 5, 2024
  • BE_perturb_seq_drug_resistance Public
    HTML 0 0 0 0 Updated Aug 26, 2024
  • miloDE Public

    Framework for sensitive DE testing (using neighbourhoods)

    R 64 3 5 0 Updated Jul 20, 2024
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