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Implementing tools to build and simulate microbial communities.
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Implementing tools to build and simulate microbial communities.

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  1. reframed Public

    ReFramed: metabolic modeling package

    Python 58 14

  2. carveme Public

    CarveMe: genome-scale metabolic model reconstruction

    Python 165 57

  3. embl_gems Public

    EMBL GEMs: A collection of GEnome-scale Models for bacterial species

    25 9

  4. smetana Public

    SMETANA: a tool to analyse interactions in microbial communities

    Python 58 12

  5. HiOrCo Public

    Higher-Order Co-occurrence

    Python 9 4

  6. designmc Public

    Designing microbial communities

    Python 5 4