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@lilab-bcb

lilab-bcb

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  1. cumulus Public

    Cloud-based scalable and efficient single-cell genomics workflows

    WDL 60 30

  2. pegasus Public

    A tool for analyzing trascriptomes of millions of single cells.

    Python 85 21

  3. pegasusio Public

    pegasus io module for reading/writing single-cell genomics data

    Python 7 4

  4. demuxEM Public

    Demultiplexing cell/nucleus hashing data for single-cell genomics

    Python 2 2

  5. harmony-pytorch Public

    Python 51 9

  6. nmf-torch Public

    Python 10 2

Repositories

Showing 10 of 37 repositories
  • pegasus Public

    A tool for analyzing trascriptomes of millions of single cells.

    Python 85 BSD-3-Clause 21 11 1 Updated Mar 18, 2025
  • harmony-pytorch Public
    Python 51 BSD-3-Clause 9 0 0 Updated Mar 18, 2025
  • cumulus Public

    Cloud-based scalable and efficient single-cell genomics workflows

    WDL 60 BSD-3-Clause 30 8 0 Updated Mar 18, 2025
  • stratocumulus Public

    Backend component of Cumulus for different cloud environments.

    Python 2 BSD-3-Clause 0 1 1 Updated Mar 17, 2025
  • cumulus_feature_barcoding Public
    C++ 2 BSD-3-Clause 1 0 0 Updated Mar 7, 2025
  • cirrocumulus Public

    Bring your single-cell data to life

    JavaScript 79 BSD-3-Clause 17 12 2 Updated Mar 3, 2025
  • altocumulus Public

    Command line tool for submitting WDL jobs to Terra or Cromwell server.

    Python 7 BSD-3-Clause 0 3 1 Updated Mar 3, 2025
  • backedarray Public

    Sparse csc and csr arrays backed by on-disk storage in Zarr or HDF5

    Jupyter Notebook 6 BSD-3-Clause 0 0 1 Updated Mar 3, 2025
  • cumulus-fb-test Public

    Test data and scripts for cumulus_feature_barcoding

    Shell 0 0 0 0 Updated Feb 6, 2025
  • pegasusio Public

    pegasus io module for reading/writing single-cell genomics data

    Python 7 BSD-3-Clause 4 1 1 Updated Sep 19, 2024
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