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chore: release 0.4.0 #655

Merged
merged 478 commits into from
Mar 14, 2025
Merged

chore: release 0.4.0 #655

merged 478 commits into from
Mar 14, 2025

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cameronraysmith
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  • release 0.4.0

@cameronraysmith
fix(workflows): io.json -> io.metrics
39f28af 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
feat(io): log dataset hash on load
cd00e8a 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(utils): log data hash on load
cd56435 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
refactor(utils): move hash function to io
6ef6954 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
refactor(datasets): update hash file import
941653e 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(io): log data hash on pickle save/load
5a0c660 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
refactor(utils): move hash file tests to separate module
cbac59e 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(styles): remove unused mplstyle key
dc77b0d 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): filter invalid adjustText warning
5e57d40 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(tasks): set 4 columns for time fate correlation legend
a9b559b 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): update vector field summary plot
8986fc6 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): filter invalid adjustText warning if logger is available
508ee80 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
test(plots): add modular layout function
9479789 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(io): use dill to support pickling matplotlib objects
daf7716 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
test(scripts): add h5 scripts
061b795 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(deps): explicitly lower bound dill
cb2bbbe 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
feat(plots): serialize figure layout and its panels separately
74254ce 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): show mean and CV histograms in shared time uncertainty
7db1074 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): use gridspec for shared time uncertainty plot
46c28c5 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): default to CV in vector field plot
9529dd7 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(io): change sparsification notice from warning to debug level
b33d7b4 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
feat(plots): set base for report
2049cd8 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(models): include std of predictive samples in posterior dict
2dc9414 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): allow setting axis-level label for colorbars
1972b79 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(analysis): remove unused list wrappers
c2efd4f 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
feat(plots): support SubplotSpec for plot_gene_ranking
d5bcbe1 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
feat(plots): support SubplotSpec for plot_parameter_posteriors
989c19b 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
feat(plots): support SubplotSpec for plot_vector_field_summary
3685fd8 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): use pure text title for plot gene ranking
e0c9466 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(plots): update major log tick labels for parameter posteriors
daabaee 
Signed-off-by: Cameron Smith <[email protected]>
cameronraysmith and others added 15 commits March 13, 2025 14:50
@cameronraysmith
test(rainbow): add fast unit alternative to slow integration
ab0f422 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
test(predictive): add fast unit alternative to slow integration
f4ddf34 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
test(posteriors): add fast unit alternative to slow integration
975b16d 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
test(genes): add fast unit alternative to slow integration
d45ddcf 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
test(report): add unit alternative to summarize integration
e756b8c 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
chore(conda): sync lock
619fbe5 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
chore(pip): sync lock
84f3988 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
chore(version): 0.4.0b5
1b9c922 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(codecov): temporarily set default threshold to 20%
588a46b 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(deploy-docs-cloudflare): pin yarn version
d4a9354 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(cid): use default github token
9cb6825 
Signed-off-by: Cameron Smith <[email protected]>
@semantic-release-bot
chore(release): 0.4.0-beta.5
c663cf2
@cameronraysmith
chore(version): 0.4.0
c209633 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(cid): use checkout branch for cloudflare docs
5338e55 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith
fix(flake): disable github for image builds
4bd844d 
Signed-off-by: Cameron Smith <[email protected]>
@cameronraysmith cameronraysmith self-assigned this Mar 14, 2025
@cameronraysmith cameronraysmith added skip-ci Skip CI workflow build-images Control image build on PRs labels Mar 14, 2025
@cameronraysmith cameronraysmith added skip-tests Skip Tests in CI workflow and removed skip-ci Skip CI workflow labels Mar 14, 2025
@cameronraysmith cameronraysmith added skip-ci Skip CI workflow and removed build-images Control image build on PRs skip-tests Skip Tests in CI workflow labels Mar 14, 2025
@cameronraysmith cameronraysmith merged commit 590b421 into main Mar 14, 2025
22 of 36 checks passed
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