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QuPath

Open source software for bioimage analysis
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  1. qupath Public

    QuPath - Open-source bioimage analysis for research

    Java 1.1k 289

  2. qupath-docs Public

    QuPath documentation

    Python 19 24

  3. qupath-extension-stardist Public

    QuPath extension to run StarDist nucleus detection

    Java 39 7

  4. qupath-extension-djl Public

    A QuPath extension for working with Deep Java Library (https://djl.ai)

    Java 6 6

  5. qupath-extension-omero-web Public

    QuPath extension to work with images through OMERO's web API

    Java 9 11

  6. qupath-extension-bioimageio Public

    A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)

    Java 4 3

Repositories

Showing 10 of 44 repositories
  • javadoc-viewer Public

    A simple JavaFX Javadoc viewer

    Java 0 Apache-2.0 1 1 1 Updated Mar 21, 2025
  • qupath Public

    QuPath - Open-source bioimage analysis for research

    Java 1,127 GPL-3.0 289 40 6 Updated Mar 21, 2025
  • qupath-extension-omero Public

    QuPath extension to work with images through OMERO's APIs

    Java 4 Apache-2.0 1 14 0 Updated Mar 21, 2025
  • qupath-extension-djl Public

    A QuPath extension for working with Deep Java Library (https://djl.ai)

    Java 6 Apache-2.0 6 3 1 Updated Mar 21, 2025
  • qupath-extension-instanseg Public

    The official QuPath extension for InstanSeg

    Java 14 Apache-2.0 6 5 1 Updated Mar 19, 2025
  • extension-manager Public

    A manager for catalogs and extensions.

    Java 0 Apache-2.0 1 0 0 Updated Mar 19, 2025
  • qupath-extension-py4j Public

    A QuPath extension for linking up to Python via Py4J (https://www.py4j.org)

    Java 0 Apache-2.0 1 0 0 Updated Mar 19, 2025
  • qupath-catalog Public

    The catalog containing the QuPath extensions developed by the QuPath team

    0 Apache-2.0 0 0 0 Updated Mar 13, 2025
  • qupath-docs Public

    QuPath documentation

    Python 19 24 6 5 Updated Mar 7, 2025
  • qupath-bioimageio-spec Public

    Support for parsing the BioImage Model Zoo spec in Java

    Java 0 MIT 2 1 1 Updated Feb 19, 2025
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