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38 Open 1,040 Closed
38 Open 1,040 Closed
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Issues list

function to decode latent representations direcly. enhancement
#3278 opened Mar 26, 2025 by ivichadriana
Error when trying to feature native MLX accelerated scvi enhancement
#3268 opened Mar 23, 2025 by c0nleyinnnn
2
RESOLVI error bug
#3267 opened Mar 23, 2025 by christophechu
2
Training time of MrVI is too long, I am not sure if it is using GPU accelerator bug
#3266 opened Mar 21, 2025 by Kassab11
1
RESOLVI: sample_posterior fails with default return_sites argument bug
#3252 opened Mar 14, 2025 by luisa-cusick
1
RESOLVI: rapids deprecated in scanpy 1.10
#3208 opened Feb 25, 2025 by j-bac
1
MrVI slowdown due to JAX compilation update bug
#3179 opened Feb 10, 2025 by justjhong
1
6
Support metric and loss loging on step enhancement
#3020 opened Oct 19, 2024 by Hrovatin
2
Fix custom dataloader registry enhancement P0
#2907 opened Jul 23, 2024 by canergen
1
@ori-kron-wis
2
Use explicit configs instead of kwargs enhancement
#2904 opened Jul 18, 2024 by martinkim0 scvi-tools 2.0
Jax version of VAEMixin backlog enhancement good first issue jax
#2779 opened May 6, 2024 by justjhong
Consider non-jitting MRVI tests/long tests pytest flag backlog P2
#2774 opened May 2, 2024 by martinkim0
Training models with torch.Tensor input enhancement P1
#2736 opened Apr 22, 2024 by j-bac scvi-tools 1.2
@ori-kron-wis
4
torch.distributed.DistBackendError when training on multiple GPUs bug P0
#2635 opened Mar 28, 2024 by CytoLiorG scvi-tools 1.3
5
PyroModelGuideWarmup fails on GPU - probably need to be manually run before trainer.fit() bug P0
#2616 opened Mar 18, 2024 by vitkl
@canergen
4
Failing to train on multiple GPUs in jupyter notebook bug P1
#2602 opened Mar 6, 2024 by chem1kal1 scvi-tools 1.3
@martinkim0
6
Enable checkpointing with autotune good first issue P1
#2580 opened Feb 29, 2024 by martinkim0 scvi-tools 1.2
@martinkim0 @ori-kron-wis
Assess whether we should deprecate more scvi.data functions backlog enhancement
#2551 opened Feb 25, 2024 by martinkim0
Remove scvi.data.cellxgene P2
#2543 opened Feb 21, 2024 by martinkim0
@martinkim0
1
Implement conditional batch/layer normalization enhancement good first issue P1
#2349 opened Dec 6, 2023 by martinkim0 scvi-tools 1.3
@canergen
1
Separate out unit and integration tests CI/CD good first issue P2 tests
#2311 opened Oct 30, 2023 by martinkim0
@martinkim0
1
Make JAX an optional dependency enhancement P1
#2281 opened Oct 10, 2023 by martinkim0 scvi-tools 2.0
5
MultiVI with Poisson/NB likelihood for ATAC? enhancement P1
#2257 opened Sep 6, 2023 by vitkl
8
Add support for SpatialData enhancement P2 spatial
#2109 opened Jun 23, 2023 by martinkim0 scvi-tools 2.0
MultiVI changes enhancement multivi
#1935 opened Mar 1, 2023 by martinkim0
3 of 5 tasks
@martinkim0
1
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